CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	0 crisprs	csa3,DEDDh,cas3	0	0	84
NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	1 crisprs	c2c9_V-U4	1	2	28
NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	3 crisprs	RT	0	4	11
NZ_CP054619	Azospirillum oryzae strain KACC 14407 chromosome, complete genome	5 crisprs	WYL,csa3,DEDDh,cas3,cas5,cas8c,cas7b	0	2	1
NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0	1
NZ_CP054617	Azospirillum oryzae strain KACC 14407 plasmid unnamed3, complete sequence	0 crisprs	c2c9_V-U4,DEDDh	0	0	0
NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	2 crisprs	DEDDh	0	8	0
NZ_CP054616	Azospirillum oryzae strain KACC 14407 plasmid unnamed2, complete sequence	0 crisprs	csa3,DinG	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054615_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054615_1

97027-97206

Orphan

Consensus_repeat	Method
ATCGGCGGCACGGGCACCGACGTCGTCACCATCGGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP054615_1

>merge|NZ_CP054615|1|97027-97206|PILER-CR
GGCACCGATGTCGTCACCATCGGCTCGGCCGGCACGACCCTGCTCGCCAATCTGCTCGAGACGGTCATCGGCGGCACGGGCTCCGAGCTGGTGTTCCTCGGCACGGCCGGTTCGACGGTCGCGGTGTCGGGCATCGACATCCTGATCGGCGGCACGGGCACCGACGTCGTCACCTTCGGC

>NZ_CP054615|1|1|97027-97206|PILER-CR
GGCACCGATGTCGTCACCATCGGCTCGGCCGGCACG	ACCCTGCTCGCCAATCTGCTCGAGACGGTCATCGGCGGCACG
GGCTCCGAGCTGGTGTTCCTCGGCACGGCCGGTTCG	ACGGTCGCGGTGTCGGGCATCGACATCCTGATCGGCGGCACGGGCACCGACGTCGTCA
CCTTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054615.1\|WP_149201799.1\|86243_87125_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
NZ_CP054615.1\|WP_149201800.1\|85327_86230_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|223528
NZ_CP054615.1\|WP_149201802.1\|82339_83404_+\|glycosyltransferase-family-4-protein	unknown	unknown	unknown
NZ_CP054615.1\|WP_149200283.1\|107887_108808_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP054615.1\|WP_149201805.1\|78912_80283_+\|lipopolysaccharide-biosynthesis-protein-RfbH	unknown	unknown	gnl\|CDD\|237960
NZ_CP054615.1\|WP_149201803.1\|81252_82275_+\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|187568
NZ_CP054615.1\|WP_174756940.1\|83433_85281_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP054615.1\|WP_149201797.1\|88206_91197_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP054615.1\|WP_149201804.1\|80296_81265_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
NZ_CP054615.1\|WP_149200281.1\|105132_107082_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP054615.1\|WP_149200284.1\|108834_110454_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP054615.1\|WP_149200285.1\|110666_112493_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP054615.1\|WP_149200286.1\|112587_113274_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|187712
NZ_CP054615.1\|WP_149200279.1\|102709_103705_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP054615.1\|WP_149200280.1\|103750_104806_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP054615.1\|WP_174756942.1\|87121_88090_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP054615.1\|WP_149200278.1\|102240_102669_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054615.1\|WP_149200282.1\|107136_107895_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP054615.1\|WP_149200287.1\|113299_114496_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP054615.1\|WP_149201822.1\|91241_93395_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|223533

Protein	Function_ID	Function_description	E-value
NZ_CP054615.1\|WP_149201799.1\|86243_87125_-\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.13516e-26
NZ_CP054615.1\|WP_149201800.1\|85327_86230_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	5.26568e-31
NZ_CP054615.1\|WP_174756940.1\|83433_85281_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.42089e-12
NZ_CP054615.1\|WP_149200283.1\|107887_108808_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.70745e-18
NZ_CP054615.1\|WP_149201805.1\|78912_80283_+\|lipopolysaccharide-biosynthesis-protein-RfbH	gnl\|CDD\|237960	PRK15407, PRK15407, lipopolysaccharide biosynthesis protein RfbH; Provisional.	0
NZ_CP054615.1\|WP_149201803.1\|81252_82275_+\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|187568	cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs. CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.81806e-153
NZ_CP054615.1\|WP_174756942.1\|87121_88090_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	2.65247e-24
NZ_CP054615.1\|WP_149201797.1\|88206_91197_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	9.55251e-22
NZ_CP054615.1\|WP_149201804.1\|80296_81265_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	3.67148e-59
NZ_CP054615.1\|WP_149200281.1\|105132_107082_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.91503e-15
NZ_CP054615.1\|WP_149200284.1\|108834_110454_-\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	8.10366e-10
NZ_CP054615.1\|WP_149200285.1\|110666_112493_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	5.79059e-16
NZ_CP054615.1\|WP_149200286.1\|112587_113274_-\|hypothetical-protein	gnl\|CDD\|187712	cd08369, FMT_core, Formyltransferase, catalytic core domain. Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis.	3.68921e-16
NZ_CP054615.1\|WP_149200279.1\|102709_103705_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	2.7965e-141
NZ_CP054615.1\|WP_149200280.1\|103750_104806_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP054615.1\|WP_149200282.1\|107136_107895_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.0668e-20
NZ_CP054615.1\|WP_149200287.1\|113299_114496_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.37365e-25
NZ_CP054615.1\|WP_149201822.1\|91241_93395_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|223533	COG0457, NrfG, FOG: TPR repeat [General function prediction only].	5.89957e-18

>NZ_CP054615.1|WP_149201822.1|91241_93395_-|tetratricopeptide-repeat-protein
MRHHQSGQIAVAARIYRRIIEIAPDQTDALHLMGLAVRRAGQGGAALRLLARALRLDPAMAEPRLNLGNMLRDFGSGQGAAAAYRSALALRPGLTAAYESLGALHRGQGRSAEAERAYRRAIRVDPMATEGHNGLANVLQERDALDDAVAAYRRGLAIDPAHAAACNNMGIALRGLGRADEAMACHRHAVALDPYFAAGHTSLGLALQEQGRLEEAARAHARAVAVDPGFAGGYANHGNARLNQNRVDEAVTGFRRAVTIDPAGPDARRNLGMALLVAGRFEEGWREYEWRLRCKDAPTHAAMPKPRWNGEPLEGRRILLHGEQGLGDALQFCRYVPLVAARGGRVLLGLPAPLQRVMAGLPGVERFVSGQLPTDAFDLHLPMLSLGEVFGTQMDTIPHRVPYLSAEPDLTARWGERLKGLAKDGDGLKVGIVWAGSPTHGNDKNRSIGLAPFARLAAIPGVSLVSIQKGPTEGQAANPPGGFPLLNLSPDIKDFADTAAIMAGLDLVVCVDTSVAHLAGALGVPVWVLVPFAPDWRWMLDRDDSPWYPTMRLFRQDRPGSWDGTMDRLEHALRERTTHVNHTRTGPSDMPILAPVSWGELLDKITILDIKAERIADADKLANVRREREALVAVAAQADTARPEVAALIDDLRAVNTTLWEVEDEIRDCERAKDFGPRFVELARQVYHTNDRRAALKRDLNQMLGSELVEEKSYQAY
>NZ_CP054615.1|WP_149201797.1|88206_91197_-|tetratricopeptide-repeat-protein
MTTDTAAGTAIGTTGLPPGQSTPEQQALERQVLELCRAGRPEEAEGPYRDLCGNPPRDAAGLLSLAEAARILSRPADAVAWAEAAVRSQPERAEGWSVLALAFIAAGRTDDGYAAAAEALRRTESGAAAIQAHRAQALARLRLGQLAEAAAACDAALRLADGAAQPAQSLRHAQAETLGTLALVRMLEGRAEEAEALFRRALSHRPVLPEILGNHASLLARLGRDEEALEQAEQAVALRPRLAGTLHLIGTLHHRAGQQESAIAVFHRVLAVDPGHLDARLRLADSLRVAGHWEEAATVCRDGLARIANPDDPNRTPLLANLGAALQSSGDTAGALDAYREALRLSPDLPEVHNNLARLHQETGNPDAAIEELRRATAGRPANQPLPLPLRRALLSLLVAAGRTAEAEAEAFGIARTAPEDAELCFGITALFLQGGWRDQALPYVRKAIRLAPDVPRNWIAFAEALRDATPPEPANGVDEGLRADLLAALGRPEVEGAGLARAIAGVLMAAPVIRTLAALPENDGPALDEASRTLLADGSLAGLAEDALLLAHLRAAPVCDPSLERALTRLRRVLLLALTGPGLPDRPSWRALCAAIAEQCFLNEYVFAETDGEFQVLAVLLRAAEAALDRKEQPPAVLVALLGAYRPLYRWERAAALQAMSWPEEIARLLNRQVAEPLAEAAIQAELPALTQISHPVSVGVRAQYEENPYPRWMTTGLLPEPVPLPRFLHALFPHAALPASPAWNAPGWEAPEVLVAGCGTGREAVWAATTLKNAKVLAVDLSRRSLAYATRQSRRLGLKSIEFAQADLLELGTLGRRFDVIHSVGVLHHMEDPVAGLRVLRGLMRPHGVMEVGFYSAAARRPILAARAFIAERGHPPTLDGIRRVRRDIQDLPDGHPARAVVHSPDFYGTSACRDLLMHVHELHVTLPWLAGALETLGLEFLGFRLADPAVAALYRKRFPEDPAMTSLARWDRLEAEHPMIFGGLYQAWVRARA
>NZ_CP054615.1|WP_174756942.1|87121_88090_-|glycosyltransferase-family-2-protein
MEQRAKDRVSICIPTRNRPNLLRELLDTVFAQTYGNYEVIITDNSDNDETRDLVAARYADPRVRYHKNETNLGMDGNARRAFSFITGEFFTFTADDDFWDADNLRRKVDLLRRVPEVNACFSNAHHILMDGRPHPQPFHTTLRPGMEAVIDGYYLNPVSLHFPPSPPLFVNTLTGLYRTAQFLAPMVESWECGSEEYAHWYLGLSGQRLGYLFDPLITIRDGEHNWEIQTGNGAVTNYRKSPEVRAAQLNRIYTTLRARRGAELTRIDRQVELAVFTFLVEQIGQAAVQYIGSFPLITVADFNAYIQERNRRQAAQAQAAQA
>NZ_CP054615.1|WP_149201799.1|86243_87125_-|glycosyltransferase
MNAATPLVSILIPAYNREREIEETVRSALAQTVQDIEVVVVDNASTDGTWAICQRLAAEDGRLRLFRNDANIGPVNNWRRCVAEARAPVSKILFSDDRLEPAYLERTLPRLQGRVAFVFTPAKLVDEAGASHGVIHQYFVDTFPSDTFVFEYLSNFGGLPVSPCAALFRTADLRDGIVSDLGPGPAGSSAADFEAHGAGPDCLIYLIAASRYPYVAYVGEPLVTFRRGGITSDLIANGRFFTCYHHALMWFMKSPMAPPPARLAAAALWRQEVRVARRVIPYEDHLRAYGVEP
>NZ_CP054615.1|WP_149201800.1|85327_86230_+|NAD-dependent-epimerase/dehydratase-family-protein
MAVLVTGGTGFVGSHLLKGLLADGHEVIVLKRSTSDLTRVRPLLGDPGLSFVDIDRDGIAGAFAGAPVEAAVHVATSYGRGGETLASILEANLIFPVELIELCVQHKVRAFVNTDSYFCKEKKSYSALPNYSLSKQNLLPWLKKFSDRIMLVNACLEHVYGAHDSPTKFCEDLIRKVALQRVDSHPLTHGHQKRDFVHVDDVVRAYVAIVRRAVGTESGYAEVNVGTGRSVEIRAFAETVKRLSGSPTDLRFGAIPYRDDEIMNSVADTRALSAMGIELGIGIEEGIADVLSRYGVGPAS
>NZ_CP054615.1|WP_174756940.1|83433_85281_+|glycosyltransferase-family-2-protein
MTSADDFVSQGMERYRGGDIAAAAAAYRLALCMDPASANAFHLLSICEIQLDRIEPALSCFRRLEAVGLRHEAIESNRRVAVQKASAVLASLPPGKALAEAASLAGAVLALDPGNPVLAFLFGGDDIDRGFVPRGLHRIAVVPADQRRRPPLLDAYNRIIVAAYDHGAGLLNGGKPVEALLTFAALAVLEPGHGQIASTLASAIRRTLREAVERHQSADLTGAVALYDAILAAVPGHPEASHLRRLADWRRGSWRPAGRTERPAPSTAHPPETSPPVLTICIPTYNRPDELVFQVENLMAQVLETGRRDIRILVSDNCSDERVERSVRIFERWNRAGAVLFEYHRNARNLGYDGNVMACFDRCVSGHIWILSDDDYVLPGTVARLCAVIDAHSPTLVFLNEPRDMGGVVGGMAFDGTLTTPAGTMVRLPLGRPLSLDAGDEQLRAAVVSHSFWLSRSVFRKSFRDYDAADLSGTSVAHIGLVNLSLVNDRQPTLYLTDQPMVMNMPHSVFSHNFIEVFVSGMHRLYGSPTMNFSPGVVRAVARENFRFLERFIDGTHPPHMTMRYRPRFFRLVRKKLEYGAGIGETLRFARDLLKYRASFRIRAGTGQPAKSTSI
>NZ_CP054615.1|WP_149201802.1|82339_83404_+|glycosyltransferase-family-4-protein
MLHFFWTPYIFRRDSYDKYEANNAEICKHARRVLGRFTDVHLDSFNASRVTRNPADILLGHTSFDSVGGLADDWVRDNALEPGQPAHPNTYLMLPLLPEPVEEHKSWSPFMDSQLRGARLIFGICGDHWYERIQALPADDMLGRVKDRIVRIDMGCEGHRFAPPRGYSQASMRGLLHMSDLAPHKGFDLLLNSVAGTGAVLHAGSSALRAHPYQRVRLNGHEFVSLGWVDNTSAQQDRFIKDNCAFYIHASSRDAQATAILENCARGLVPMVTPESGFRSPYAIELTQDAEANRAIIARALAMPQEEYERRSAGVVRQVLEQHSWDRIFTGIWERIQQDIAGRAAWAGRAGQAG
>NZ_CP054615.1|WP_149201803.1|81252_82275_+|GDP-mannose-4,6-dehydratase
MRYLITGGCGFLGSNLAAAVLERGEDLCVFDNLSRRGSTLNLDWLRGQGEFEFRHGDIRNPNDVQRAVAELRPDVVFHLAGQVAMTTSLADPRLDFEVNALGSFNLLDAVRRSAPDALVLYSSTNKVYGDLEWTPYEETETRYVAPAFPNGFDETAPLDFHSPYGTSKGAADQMMLDHHRVFGLRTVVFRHSSMYGGRQYATADQGWVGWFCGLAVQAGLGKLKDPFTISGTGKQVRDVLHAEDMKTLYFSAVERADAVAGQVFNIGGGMANSLSLLELFRLLEELHGVEMRFERLPPRISDQRIFVADIAKARRLLGWEPKVDARRGVSDMLAWIAGQG
>NZ_CP054615.1|WP_149201804.1|80296_81265_+|SDR-family-NAD(P)-dependent-oxidoreductase
MRVLVTGSAGFLGAHVAARFAHAGWTVLAAGREGSDSWRLARLGVAAEPVRLDLTASGDEIAAAVAGARPDLIVHCAAYGVDYRFQDVAASVRTNLEGTLHLVRAAAQGGVKRFIHVGTCYEYGPSDHPIAEDAPPAPRSLYGITKAAATLAALGTAASHGLALAVVRPFGMYGPLENDTKFVPMILRACRDGRRTELTAGGQLRDYVYVGDVAEACLRLAELPDFPAGEIVNLGSGAPITIRALGDAAARAVGHGGDALAWGALPYRPDEVMSIVADAGKAAARLGWRASTPLDEGMRQTLAFLDPPEKLPENTGVLPCAT
>NZ_CP054615.1|WP_149201805.1|78912_80283_+|lipopolysaccharide-biosynthesis-protein-RfbH
MTSSPSSPATSSPAGSADRREDLRRRILDLVAEYAEVAHADRPFDPARSPVPVSGKVYGGEEMALLVDSALDFWLTTGRFNDAFEKRLGEFLGARNVLTVNSGSSANLLALTALTSPLLGDRALNPGDEIITCATGFPTTVNPILQNGMVPVFLDVDIPTYNMDMRLLEEAVTPRTRGIMLAHTLGNPFDLAAVTRVAEKHGLWVVEDCCDALGARYDGKLVGSFGDVGTLSFYPAHHITMGEGGAVFTSNAKLKRSLESFRDWGRDCWCQPGQDNTCKQRFNWQLGDLPHGYDHKYIYSHLGYNLKITDMQAAVGLGQMDRLEGFIEARKVNFARLKAGMAELADMLILPEATPNSDPSWFGFPITVAADAPFSRDELTRELTRARIGTRQLFGGNLLRQPYMKGRPHRVVGELTNSDVVTARTLWIGVYPGLTAAHIDYMLDVIRGFVRARTAG
>NZ_CP054615.1|WP_149200278.1|102240_102669_-|hypothetical-protein
MSAKSRLVINVEVDDRTVLFPDGKFLSHIALTEEGSAQDGAVRMEGVFLFNESRLGPEIATLPEEDARELARSILDAVFQGRTQHVLSETAKVAVVFNPNGFVLRFGEGDALRELFIGSPAIIRLAQGILRLVDRLSAQPAH
>NZ_CP054615.1|WP_149200279.1|102709_103705_-|GDP-mannose-4,6-dehydratase
MIIGTTTRSEPKTALVFGVSGQDGAYLAQLLLDKGYTVHGTSRDREMASFANLRRLGIFGRVILHSAVLTDFRSVVEVIARVRPAEIYNLASQASVGLSFDQPVETLNSTINSTINILEAIRFLKLDARFYNASSSECFGNTGTPADESTPFHPRSPYGVGKAAAYWAVANYREAYGLFACSGILFNHESPLRPVRYVTQKIIRGAADIAEGKTDSLELGTLSIARDWGWAPEYVDAMARMLAHDQPEDFVIATGEAHRLEDFVEQAFSYFGLDWRRHVHGNAALLRPSDIAFSVGNPAKAERLLGWRAERRMAEVVIGLADAEMARRAAD
>NZ_CP054615.1|WP_149200280.1|103750_104806_-|GDP-mannose-4,6-dehydratase
MRKVALITGATGQDGAYLAELLLGKGYVVHGVKRRSSSFNTGRVEHLYRDPHEEDVSFFMHYGDLTDSTNLIRLVQQIQPTEIYNLAAQSHVHVSFETPEYTANADGIGTLRLLEAIRILGLEKTARFYQASTSELYGKVQETPQRETTPFYPRSPYAAAKLYAYWITVNYREAYGMHASNGILFNHEGPTRGETFVTRKITRAVAAIEHGRQDCLYLGNLDAKRDWGHARDYVEGMWRILQQDEADDYVLATGETHSVREFVELAFGHIGRGIEWRGEGVDEEGICQKTGKVVVRIDPRYFRPTEVDLLLGDPSKARAKLGWTHTTAFRDLVRDMVESDMRLAANGDDHH
>NZ_CP054615.1|WP_149200281.1|105132_107082_+|tetratricopeptide-repeat-protein
MATVAEALQIAVGLQRSDRLGEARALYLRILEVDPRNATALHLLGLIERREGRRDKALELIRSALEVAPQMADACCNLASTLSELGRIDEAAAAQRRALAIDPALEPAHHGLATLLCGRGGPRDWAVSAASFRRALRLTPQRPNLYHDLGIALRQGGASDAGALALAVDSQRNALALQPDFAAAHMNLGNLLVELGRLDEALVCFRRSLTIEPEQGGALYNHGNAQHAAGLADAAVDSYVRAARAGVNLSLTRLADVLTGLGREAEAEQVLRLALTRPGSDVAGAIDMLSALLVRQGRYEESRRFFADYRYPHIADPNAFRIECLTAIAESWLAAGEVDRAVEVLAGVHGHGSRFFTVKSIAGLQQVLARQGKRLERPANPDPSAPRICSSTLATHGRFAHNVLEYVLLRLYAEKFGYRLETPDWVGGYYFDLDDPKPSGGLKPMHFARRILNDLVTGRRDDPRPDVDILSPLFLFEHREEWRERVRSWLRPRPEWLPHVDPVMQALKARGNTVVALHIRRGDFVWFRYTITETAWYVDWLKALWPTLDRPVLYIATDDPATIADFAEFAPVSLDDLARDGAVQPWKGLEFLQDFHVLMNADVLGVSAQSGYSQLAALLNRNARLFVEPDAAARRIRPYSPWTSSSGTP
>NZ_CP054615.1|WP_149200282.1|107136_107895_+|methyltransferase-domain-containing-protein
MDLATKEFYDDFWPRFVPIYDETKKYMLETLTERQIGRALDAGCGHGICSVILSEMAEQVVSVDVSSDSLATARQQAQRFGRDNIEFHHQDLQELDTNLGPFDLVWCWGVAMMAPDPMKVMRNLMAVTKPGGTVYLGLYLKTWLSPVHEGVRHFCRAYMDTPARRKLVGGFFTGLTKVACVLKGQEINRRADNVSIQAQVEDWYYPPYKTFYSIEEIIALFERNGFKAECIQDRLGRMKSATIFVIRATKNA
>NZ_CP054615.1|WP_149200283.1|107887_108808_+|methyltransferase-domain-containing-protein
MPEAAAGRQDGTAPPDWEELGRLLSRGYIDSGFIGGVTRVPVKDVVRDMLSEARADEQVAELRRTAAAAGVDADKARILEVGSGCGMTVVRGRTAHGLDIHGIEPSMGEYSSTLDVCRRLIDHYGLPADAVQDATGEAIPFADASFDIVYSSNVLEHVGDPAAVLDEALRVLKPGGLLLIVVPNYGSWWEGHYGILWLPRMPAGMAKLYVRLFGRDPSYVDTLNLIDRPWFDRWLGRHPGRLEVLDWGWGVFEQRLRTLGFGDWAALSVAKRIVTFVHRSGLLEPAIWLARRLHWETPIIFAARKR
>NZ_CP054615.1|WP_149200284.1|108834_110454_-|hypothetical-protein
MIQPQPFLIPAVQAHQTDRLDEARQLYRKALAVDPAQYDGLQLLGLVEKRFARTGEAVALMRRSLRLAPGFTAVRQNLCRTLQGIGDHAGSLVLLRQLAAELPDDAETLYQLGGTLLRQERRQEAAGPLRRAAMLRPDHLETRIALSEALLLDPASQGAEFEESLRNARASVMLGPGNPVAHLQIALVQEEMAHATESLAACRRALRVQPTMTDARHIAGINRLRLGDFVGGMADFEARKNNVWFQADGSPIPIWDGRPLPDDTVALAAEGGWGDMIHFVRFVPQVARICGEVVVVCPPRLQRLLSTVPNPGNIRFNPERMPAIRARSMFLSLPHLLGSTADAVPNRPYLSADPERVRLWTDRLAGLGGLRVGLCWSNGDATRDADPKRSVPFEFVRPLAAIPGVTLVDLHKQDNAAKRLADADEALLHRLGPDFDAGPDAFLDTAAVMKTLDLVIAIDSSVLHVAGALGVPSWLPAPYRMDWRWMNDAEKSIWYPSLRIYRQDRQWDWSGSMARIARDLARAAEAKAAGLAPDLLPAG
>NZ_CP054615.1|WP_149200285.1|110666_112493_+|tetratricopeptide-repeat-protein
MDSRFMGQDIARAIEHYRAGRRDDALALAEQVLREGPGDSGALNLAGVILYELGRLDEAEERLSRLVALDPFFFQARVNLAVVLQAKGARMDAVAQFRMVAALLPDQLEVQDRLGSLLHGLGDHDGALRHLRRAVRLAPDDPNRRVLLAVSLMSNGAHAEAAAILSDVLAQQPGHADARGHLAAARLSSGRPDLAEAVLAEGGAVTGEAANTLARARLYRRIAEEAGRPQLPHGLLVRAPFSVLSGYGDFAQHFVRSLMERGQTLRLAGLMGEESWRPSFADPILQAAARRLDAPLRPRLALSVLTPPLVEPIPGVPTVNYTMFEGPRIPPVFAACSRAHDLVIVPTESSRLAWVASGHPEDRIRVCPPGIAPNPADAGARPLPIMGPRGRGVMDYRVRVLNISDFVARKNLDGLLRVWLRATRADDDAILILKVGKGGSSLIGEVRRLLEQGMHATGRRMEEAAPIALLTDRYNEQGIACLYAMATHYFSLSHGEGWDLPITRAGCLGAGLIAPRHSAYTAYLNDEVAHLIPCTTGPALMPYSSAYYPAFHGLDWWHPDEDAAAEILSRVVRNPEGERRDAARHLTETFTWDAAASRLLDVLDGVGG
>NZ_CP054615.1|WP_149200286.1|112587_113274_-|hypothetical-protein
MPATLALLCPQEDARHLGAILATANRDLVVVTAADAAGLERAVAETGGVDRIVAFRTNSIVPAALLQRIPGPSYNFHPGPPGYPGRHPFAFALYDGAAQYGVTAHEMTERVDAGPIVGALSFPLPELPDADWLIDRTYTALIQLFVMLAPQLALTGTPLPRTGLAWDQSRRCTRKALDALRALPPDIGSEEMERRIRALRSVRHEGIRPHLTLHGRRFALEDNYTNGF
>NZ_CP054615.1|WP_149200287.1|113299_114496_-|glycosyltransferase
MIPNLAFTWQLTEVHGWGLVGVHTALYLADMGRPPLLLEKPLMGTLRPENRAKLQSLEGPYQQVAAMADNAKGHMLLLKEFDVLHALGNGFTAGGPSGRFRGRRNIGVIAYEETRFTPEVMARARQYDRIVVHSTYNRQLLEIWGFDNVGLAFQGIDPTEMVETEPSGRFGDRFVIFSGGKLEFRKGQDIVLAAFRAFRQRHPDALLVTAWQNAWPEVGMTMAESPLAPKPPRVLPNNMVDVKTWALENGADEEGFVDLGFLGRHQIAGILADCHAAVFPNRCEGATNLVAMEAMACGVPVVLSNNTGHRDLLKSPTQGDDLCLTLDRQVPVADRDGSRFGWGESSVDELVEALERLYTDRAAAKARAARAKAFIRTERTWRAFAEAFVDATQDAAAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP054615_1	1.1\|97063\|42\|NZ_CP054615\|PILER-CR	97063-97104	42	NZ_CP054615.1	97990-98031	1	0.976

1. spacer 1.1|97063|42|NZ_CP054615|PILER-CR matches to position: 97990-98031, mismatch: 1, identity: 0.976

tcggccggcacgaccctgctcgccaatctgctcgagacggtc	CRISPR spacer
tcggccggcacgaccctgctcgccaacctgctcgagacggtc	Protospacer
**************************.***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054615_1	1.1\|97063\|42\|NZ_CP054615\|PILER-CR	97063-97104	42	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	97051-97092	0	1.0
NZ_CP054615_1	1.2\|97141\|58\|NZ_CP054615\|PILER-CR	97141-97198	58	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	97113-97170	0	1.0
NZ_CP054615_1	1.1\|97063\|42\|NZ_CP054615\|PILER-CR	97063-97104	42	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	97990-98031	1	0.976
NZ_CP054615_1	1.2\|97141\|58\|NZ_CP054615\|PILER-CR	97141-97198	58	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	98052-98109	1	0.983

1. spacer 1.1|97063|42|NZ_CP054615|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcggccggcacgaccctgctcgccaatctgctcgagacggtc	CRISPR spacer
tcggccggcacgaccctgctcgccaatctgctcgagacggtc	Protospacer
******************************************

2. spacer 1.2|97141|58|NZ_CP054615|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gctggtgttcctcggcacggccggttcgacggtcgcggtgtcgggcatcgacatcctg	CRISPR spacer
gctggtgttcctcggcacggccggttcgacggtcgcggtgtcgggcatcgacatcctg	Protospacer
**********************************************************

3. spacer 1.1|97063|42|NZ_CP054615|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.976

tcggccggcacgaccctgctcgccaatctgctcgagacggtc	CRISPR spacer
tcggccggcacgaccctgctcgccaacctgctcgagacggtc	Protospacer
**************************.***************

4. spacer 1.2|97141|58|NZ_CP054615|PILER-CR matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.983

gctggtgttcctcggcacggccggttcgacggtcgcggtgtcgggcatcgacatcctg	CRISPR spacer
actggtgttcctcggcacggccggttcgacggtcgcggtgtcgggcatcgacatcctg	Protospacer
.*********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 30222

Tupanvirus(13.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200428.1\|190_1147_-	GDP-mannose 4,6-dehydratase	A0A2K9KZK0	Tupanvirus	3.9e-84	46.9
WP_149200429.1\|1176_2040_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	4.8e-102	61.8
WP_149200479.1\|2051_2942_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	2.7e-39	39.1
WP_149200430.1\|2950_4018_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.7e-96	52.3
WP_149200431.1\|4091_4643_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A218MN57	uncultured_virus	2.9e-36	45.7
WP_149200432.1\|4646_8171_-	glycosyltransferase	A0A0N7G7L1	Chrysochromulina_ericina_virus	5.7e-08	23.9
WP_174756985.1\|8348_9710_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.9e-07	25.0
WP_149200434.1\|9765_10596_-	ABC transporter permease	NA	NA	NA	NA
WP_149200435.1\|11457_12294_+	sulfotransferase	NA	NA	NA	NA
WP_149200480.1\|12391_13306_+	sulfate adenylyltransferase subunit CysD	M4W6M9	Bacillus_phage	2.0e-05	24.2
WP_149200436.1\|13305_15249_+	sulfate adenylyltransferase subunit CysN	A0A142CJQ8	Brazilian_marseillevirus	5.3e-32	28.4
WP_149200437.1\|15319_16207_-	S-methyl-5'-thioadenosine phosphorylase	NA	NA	NA	NA
WP_149200438.1\|16359_17451_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_149200439.1\|17474_18899_-	UdgX family uracil-DNA binding protein	A0A127AW33	Bacillus_phage	1.4e-10	30.6
WP_149200440.1\|18914_20126_-	putative DNA modification/repair radical SAM protein	NA	NA	NA	NA
WP_149200441.1\|20229_22236_-	tetratricopeptide repeat protein	D6PFH9	uncultured_phage	7.3e-08	25.2
WP_149200442.1\|22658_23342_+	DUF2076 family protein	NA	NA	NA	NA
WP_149200443.1\|23400_24768_-	nucleotide sugar dehydrogenase	M1HKZ1	Paramecium_bursaria_Chlorella_virus	1.9e-36	30.1
WP_149200444.1\|24906_25842_-	neutral zinc metallopeptidase	A0A1I9SA48	Rhodococcus_phage	5.5e-35	35.7
WP_149200445.1\|26236_26449_+	hypothetical protein	NA	NA	NA	NA
WP_111070757.1\|26504_27038_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	2.8e-15	37.7
WP_149200446.1\|27258_28905_+	PAS domain S-box protein	NA	NA	NA	NA
WP_149200447.1\|29016_30222_+	serine hydrolase	B6DZZ7	Stx2-converting_phage	7.1e-27	34.7

DBSCAN-SWA_2

34642 : 36856

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200450.1\|34642_36856_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.8e-113	38.1

DBSCAN-SWA_3

52609 : 56095

Enterobacteria_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200466.1\|52609_53602_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.8e-31	48.3
WP_149200467.1\|53940_55173_+	hypothetical protein	NA	NA	NA	NA
WP_149201870.1\|55290_56095_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	2.0e-25	34.2

DBSCAN-SWA_4

61257 : 61935

Aurantimonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201818.1\|61257_61935_-	AAA family ATPase	A0A0A8IL09	Aurantimonas_phage	1.5e-18	30.1

DBSCAN-SWA_5

68811 : 82275

Tetraselmis_viridis_virus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201812.1\|68811_69582_+	methyltransferase domain-containing protein	M4R110	Tetraselmis_viridis_virus	1.5e-06	35.8
WP_149201811.1\|69720_70698_+	flippase-like domain-containing protein	NA	NA	NA	NA
WP_174756937.1\|70812_71835_+	glycosyltransferase family 2 protein	B9UDL7	Salmonella_phage	4.2e-28	29.8
WP_174756939.1\|71904_73902_-	hypothetical protein	NA	NA	NA	NA
WP_149201808.1\|73898_75836_-	asparagine synthase (glutamine-hydrolyzing)	A0A2P1ELF7	Moumouvirus	1.2e-23	25.1
WP_149201823.1\|76111_76879_+	FkbM family methyltransferase	A0A291AUV0	Sinorhizobium_phage	3.6e-08	25.5
WP_149201807.1\|77003_77774_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_149201806.1\|77782_78865_+	CDP-glucose 4,6-dehydratase	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	3.9e-16	27.1
WP_149201805.1\|78912_80283_+	lipopolysaccharide biosynthesis protein RfbH	A0A218MN59	uncultured_virus	8.6e-53	31.0
WP_149201804.1\|80296_81265_+	SDR family NAD(P)-dependent oxidoreductase	Q58M85	Prochlorococcus_phage	4.3e-14	27.3
WP_149201803.1\|81252_82275_+	GDP-mannose 4,6-dehydratase	J7Q7J8	Aeropyrum_coil-shaped_virus	4.2e-20	31.2

DBSCAN-SWA_6

85327 : 86230

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201800.1\|85327_86230_+	NAD-dependent epimerase/dehydratase family protein	A0A0E3FNQ3	Synechococcus_phage	2.1e-07	25.8

DBSCAN-SWA_7

91241 : 93395

Heterosigma_akashiwo_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201822.1\|91241_93395_-	tetratricopeptide repeat protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	8.9e-12	32.5

DBSCAN-SWA_8

102709 : 104806

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200279.1\|102709_103705_-	GDP-mannose 4,6-dehydratase	M1HVG7	Acanthocystis_turfacea_Chlorella_virus	5.1e-71	44.7
WP_149200280.1\|103750_104806_-	GDP-mannose 4,6-dehydratase	M1HKY0	Acanthocystis_turfacea_Chlorella_virus	1.7e-133	66.2

DBSCAN-SWA_9

116926 : 119083

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200289.1\|116926_119083_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	6.3e-42	28.1

DBSCAN-SWA_10

123927 : 124878

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174756986.1\|123927_124878_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	7.7e-93	51.8

DBSCAN-SWA_11

128557 : 131352

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200298.1\|128557_130039_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	8.4e-54	30.5
WP_149200299.1\|130110_131352_+	methyltransferase domain-containing protein	A0A2H4UUL2	Bodo_saltans_virus	2.1e-90	40.0

DBSCAN-SWA_12

139161 : 141284

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200304.1\|139161_140241_+	GDP-mannose 4,6-dehydratase	M1HKY0	Acanthocystis_turfacea_Chlorella_virus	2.3e-133	66.4
WP_149200305.1\|140237_141284_+	GDP-mannose 4,6-dehydratase	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	1.1e-71	42.7

DBSCAN-SWA_13

145950 : 148260

Ostreococcus_lucimarinus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200308.1\|145950_148260_-	glycosyltransferase	M4QN93	Ostreococcus_lucimarinus_virus	1.9e-07	24.9

DBSCAN-SWA_14

173840 : 174623

Sinorhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200470.1\|173840_174623_+	metallophosphoesterase	A0A0F6WBP4	Sinorhizobium_phage	7.9e-19	34.5

DBSCAN-SWA_15

179348 : 180269

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200327.1\|179348_180269_-	FkbM family methyltransferase	A0A0A0V284	uncultured_virus	1.9e-08	32.9

DBSCAN-SWA_16

187862 : 190464

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200333.1\|187862_189647_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	3.6e-19	26.0
WP_149200334.1\|189822_190464_+	hypothetical protein	M4QPH2	Synechococcus_phage	2.4e-13	40.6

DBSCAN-SWA_17

194230 : 195359

Arthrobacter_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200340.1\|194230_194797_-\|tail	tail fiber protein	A0A222ZG41	Arthrobacter_phage	2.3e-07	36.4
WP_149200341.1\|194813_195359_-\|tail	tail fiber protein	E3T4R8	Cafeteria_roenbergensis_virus	1.5e-16	37.7

DBSCAN-SWA_18

210336 : 223001

Bathycoccus_sp._RCC1105_virus(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200356.1\|210336_211470_-	aminotransferase class V-fold PLP-dependent enzyme	E5ES42	Bathycoccus_sp._RCC1105_virus	1.8e-27	31.8
WP_149200357.1\|211456_212560_-	aminotransferase class V-fold PLP-dependent enzyme	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	2.8e-17	26.3
WP_149200358.1\|212575_213658_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_149200359.1\|213650_214625_-	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_149200360.1\|214647_215649_-	NAD-dependent epimerase/dehydratase family protein	A0A0F7LC08	uncultured_marine_virus	1.6e-27	31.4
WP_149200361.1\|215645_216269_-	SIS domain-containing protein	A0A067XQR2	Caulobacter_phage	1.2e-17	36.5
WP_149200362.1\|216280_217816_-	adenylyltransferase/cytidyltransferase family protein	A0A2H4N7Y0	Lake_Baikal_phage	1.3e-09	39.6
WP_149200472.1\|217825_218827_-	GDP-mannose 4,6-dehydratase	A0A0E3FNQ3	Synechococcus_phage	2.0e-51	39.6
WP_174756966.1\|218832_219867_-	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_174756968.1\|220408_221077_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_149200365.1\|221066_223001_+	hypothetical protein	A0A1B1IVF2	uncultured_Mediterranean_phage	3.5e-60	32.4

DBSCAN-SWA_19

226131 : 227313

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200369.1\|226131_227313_+	radical SAM protein	A0A1B1IVD8	uncultured_Mediterranean_phage	4.4e-05	24.4

DBSCAN-SWA_20

235758 : 237465

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174756976.1\|235758_237465_-	carbamoyltransferase	E3SK81	Synechococcus_phage	3.0e-47	30.4

DBSCAN-SWA_21

248211 : 250452

Thermus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174756979.1\|248211_249186_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A068A1P5	Thermus_phage	1.5e-35	37.4
WP_149200383.1\|249687_250452_+	SDR family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	9.8e-06	23.8

DBSCAN-SWA_22

260578 : 262942

Tokyovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200394.1\|260578_262942_-	glycosyltransferase	A0A146JIR7	Tokyovirus	1.8e-26	30.4

DBSCAN-SWA_23

268012 : 268954

Thermus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200402.1\|268012_268954_+	LysM peptidoglycan-binding domain-containing protein	S6BFI4	Thermus_phage	1.4e-06	63.6

DBSCAN-SWA_24

275790 : 276855

Brevibacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200406.1\|275790_276855_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0K2CNY2	Brevibacillus_phage	1.1e-07	36.4

DBSCAN-SWA_25

281777 : 284033

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200475.1\|281777_284033_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	9.2e-52	29.8

DBSCAN-SWA_26

290233 : 290824

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200414.1\|290233_290824_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	7.1e-20	47.4

DBSCAN-SWA_27

295539 : 297779

Stenotrophomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200417.1\|295539_296787_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A2D2W2B8	Stenotrophomonas_phage	9.4e-14	29.2
WP_149200476.1\|296786_297779_-	UDP-N-acetylglucosamine 4,6-dehydratase (inverting)	L7Y3T9	Megavirus	2.7e-40	32.9

DBSCAN-SWA_28

308666 : 313060

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200422.1\|308666_310136_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.3e-51	30.4
WP_149200424.1\|310399_310822_+	hypothetical protein	NA	NA	NA	NA
WP_174756983.1\|310825_313060_+	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	5.0e-42	29.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054622

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054622_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054622_1

66496-66575

Orphan

Consensus_repeat	Method
CCATTTACCCGACGTCGGGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054622_1

>merge|NZ_CP054622|1|66496-66575|CRISPRCasFinder
CCATTTACCCGACGTCGGGTAAAAACGGGTGGACAAGGGCGGTGCGCCCGCTCCTCTCCTTTTACCCGACGTCGGGTAAA

>NZ_CP054622|1|1|66496-66575|CRISPRCasFinder
CCATTTACCCGACGTCGGGTAAA	AACGGGTGGACAAGGGCGGTGCGCCCGCTCCTCT
CCTTTTACCCGACGTCGGGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054622.1\|WP_136705928.1\|66774_68073_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP054622.1\|WP_109153167.1\|57384_58035_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP054622.1\|WP_109153172.1\|61615_62026_-\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP054622.1\|WP_109154434.1\|73331_74735_-\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|223989
NZ_CP054622.1\|WP_109153177.1\|65563_66448_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP054622.1\|WP_109154439.1\|70317_70791_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP054622.1\|WP_109154437.1\|71675_72317_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP054622.1\|WP_109153176.1\|64488_65571_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP054622.1\|WP_109153175.1\|62902_63751_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154438.1\|70992_71502_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109153171.1\|61271_61619_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP054622.1\|WP_109154436.1\|72358_72634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_146203841.1\|72792_73263_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_158282487.1\|68297_68492_+\|DUF1643-domain-containing-protein	unknown	unknown	gnl\|CDD\|377919
NZ_CP054622.1\|WP_109153169.1\|59071_59329_+\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|372613
NZ_CP054622.1\|WP_109154440.1\|69375_69621_-\|DUF4167-domain-containing-protein	unknown	unknown	gnl\|CDD\|372713
NZ_CP054622.1\|WP_109153168.1\|58441_59017_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368367
NZ_CP054622.1\|WP_109154433.1\|74762_74942_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109153170.1\|59548_61192_-\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP054622.1\|WP_109153174.1\|62672_62897_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054622.1\|WP_136705928.1\|66774_68073_+\|ATP-binding-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	1.49686e-09
NZ_CP054622.1\|WP_109153167.1\|57384_58035_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.18955e-47
NZ_CP054622.1\|WP_109153172.1\|61615_62026_-\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	5.89145e-11
NZ_CP054622.1\|WP_109154434.1\|73331_74735_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	8.26324e-54
NZ_CP054622.1\|WP_109153177.1\|65563_66448_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	3.23924e-45
NZ_CP054622.1\|WP_109154439.1\|70317_70791_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.04601e-12
NZ_CP054622.1\|WP_109154437.1\|71675_72317_-\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	1.6386e-09
NZ_CP054622.1\|WP_109153176.1\|64488_65571_+\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.16664e-57
NZ_CP054622.1\|WP_109154440.1\|69375_69621_-\|DUF4167-domain-containing-protein	gnl\|CDD\|372713	pfam13763, DUF4167, Domain of unknown function (DUF4167).	2.87622e-10
NZ_CP054622.1\|WP_109153171.1\|61271_61619_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.80786e-53
NZ_CP054622.1\|WP_158282487.1\|68297_68492_+\|DUF1643-domain-containing-protein	gnl\|CDD\|377919	pfam07799, DUF1643, Protein of unknown function (DUF1643). The members of this family are all sequences found within hypothetical proteins expressed by various bacterial species. The region concerned is approximately 150 residues long.	1.45224e-06
NZ_CP054622.1\|WP_109153169.1\|59071_59329_+\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|372613	pfam13467, RHH_4, Ribbon-helix-helix domain. This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.	6.88219e-12
NZ_CP054622.1\|WP_109153170.1\|59548_61192_-\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.69835e-101
NZ_CP054622.1\|WP_109153168.1\|58441_59017_+\|hypothetical-protein	gnl\|CDD\|368367	pfam05280, FlhC, Flagellar transcriptional activator (FlhC). This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.	9.0732e-05

>NZ_CP054622.1|WP_109153177.1|65563_66448_+|ParB/RepB/Spo0J-family-partition-protein
MAKKFANTNPAFGLAAASIDLDRVTNPDFPEINKVPLADIHPNPNQPRKTFDEAELAGLAASIDGHGLKQPVLIRRRAEGGYMLVAGERRFRAHQLLGRDNILAIIVSDREDVEVTALVENLQRVDLTPVESGRGLVRLQERALAKGEKLTQEDLARFIGKSQSEVTRLLNIVKLPAAVLVEYEAIQKEVSKSALSELLGIDDEAVTMRLWDMVKNGASVAELRKAKAASRGDDNPAPEAATAPRAAPIERARKQWRTMATSLSKQEIRSEDLSTDDVDDLRRLRDVITGIIGE
>NZ_CP054622.1|WP_109153176.1|64488_65571_+|AAA-family-ATPase
MEGLTLKAVREQRGASQAEFADWLNDGIGRSYDRARISRWESGGEKIPAAVANFVRANSNAAEGKLVPGLREALLASSDKLFGVTSNPPAHQTACVVLALANQKGGVTKSTSSCNLAFLLAEMGKRVLLIDADPQASSTQSLAVNPMQLEAEQRSLTHFLLNEGADPVHFPVKVCDGAFDLIGCSITLAQAEGQLKFGQTQGDKVLGERLAPLKPSYDVIIIDCPPHLGGLTESALISADQVLIPTICEPMAVLGVPHLIKTIQDVKRRGNPKIEILGILPAIFERRSTIDVQTLGDLQAAFGAHIKVWDPIPKRKDFAKAVQTGKPLFAIVPKADGIETYRSIAHALLAKAPALETTNG
>NZ_CP054622.1|WP_109153175.1|62902_63751_+|hypothetical-protein
MKSRLRKVLCITGAVILAVPVAVAGVGVATFTALPLIASALPLELSRIMLTDGTRQVEMQGMIHIASPEFYRDVADLVARRRGEGWLVFYEGVRDDVGRGNGAFSDVLNSLGGAPNLLEDTEAHPYETLAPALGEGLVLQDNDAIVGRPGPGVRNVDVTLSELLAELPPTPPSAHDRQPDAPFTLAEAREVFDTLPGWVQNRVRAAFQILLSTTTSGRYAHAVLPPAITTLREQRVAREIEDARDRSILVLYGQLHINAISSHLIAADPAWRIVSTATVKPF
>NZ_CP054622.1|WP_109153174.1|62672_62897_+|hypothetical-protein
MQTISDHDFRPPRLTIQYALTALHLWFTDRISLATLLLALRHHPAAVAGKGGSHIIDQQAAGAYFGSEPARSSE
>NZ_CP054622.1|WP_109153172.1|61615_62026_-|transposase
MAYQRVEVLTGTERRRNYTLAEKVRMVEEAFRPGVVVTEAARRLGVHESLLYRWRGLMKASGTAVAEPSSFVAVTITPEPTVTEPLVGEPPGALPPPARPAISPAVLEVILPSGARLRLEGPVDPALAAAVVGALA
>NZ_CP054622.1|WP_109153171.1|61271_61619_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MIPMPSGVRVWLATGHTDMRKGWASLALLVQERFAQDPHSGHLFIFRGRRGDLVKIIWYDGQGSCLFMKRLERGRFIWPTPADGAVSISVGQMGYLLEGIDWRNPQKTWRPEAAG
>NZ_CP054622.1|WP_109153170.1|59548_61192_-|IS66-family-transposase
MTAASPPAALTDDIASLRAALAQAEARADAAEAEAARARAMASNTEALIASLKLEIEKLRRELYGTRSERKARLLDQLEFQLEELEATASEDELAAEQAAAKTTAVAAFTRKRPSRQPFPDHLPRERVVVPAPASCPCCGSDKLCKLGETITETLEVIPRQWKVIQTVRERFSCRACETISQPPAPFHATPRGWAGPNLLATLLFEKFGQHQPLNRQAERFAREGVPLSLSTLADQVGTAAAVLKPLHDLIAAHVMAAGRLHSDDTPVPVLAKGKTDTGRLWVYVRDDRPFAGQAPPAALFHYSRDRRGEHPERHLAGFSGWLQADAFAGYNRLYEPDRQPGPIHAALCWAHARRGFFKLADIAANTKRGKDAPPISPLALEAVRRIDAIFELERALNGKPTAERLAARQERGVALVAALEAWMRTERARLSRHAPVAKAMDYMLTRWDGFTRFLGDGRLCLTNNAAERGLRGIALGRKAWLFCGSDRGGQRAAIMYGLIITAKLNDVDPQAWLADVLARINDIPQTRLHELLPWNWKAIREQTKAA
>NZ_CP054622.1|WP_109153169.1|59071_59329_+|ribbon-helix-helix-domain-containing-protein
MKTNTSAVVFALDGRRITVELEEEFWEALRDVAARQNTDLATLVEQLNRRRGADSLTTALRMFAIAYYRSAVEAQEAGAILLRAN
>NZ_CP054622.1|WP_109153168.1|58441_59017_+|hypothetical-protein
MSAASLQRPAAAPLDTDLAARMILRWFPLPIIRLHTGLSDEAIRELYRQHHDVPPPASALPDVADLLGTTATARQASNFLSHYVRLTQSTAYRRVDVNALIVSHDLHLASRDPHTTEPTTIAAAWVLARELRSRAISFVSCECGRDHVVHKEVAAASSCPHCGASLAKGRSSVHDHTWRDNTAVDRAVRVS
>NZ_CP054622.1|WP_109153167.1|57384_58035_-|response-regulator-transcription-factor
MRILLADDHWFLYESMARLLNEEIPGSEVVGVATLDDAFKEVDRDKAFDLILLDLNMPGMAPGGQDRFSCIDRIKEMRPDTPVAIISAEEDEDIVQEALSRGAAGYIPKSLARNSLVAAMQLLVSGMTFSPRPAIQRISSNADSRGERGPQRGGQKGASLSARESEVLSLMVQGLSNKAIAERLGVKEVTVKEHVSAILKKRGAKSRLEIIAAAVR
>NZ_CP054622.1|WP_136705928.1|66774_68073_+|ATP-binding-protein
MRIKFGTYKPAEGPEEIPVFWDSEKVMNSHFTVIGPSGSGKTTRLRRLMAGMSLVNSRIRFVVLDPHGDMGVSGEDSFRFSATSDLGLNPLTVREDPDYGGVTRAIETFLKTISRTSRPLGSKQEHTLHNILLDLYAYLGFHADRPETWNLRYDDRRNPEMPKRHPTVKTLKWFMERKMTQVFLGTSSETVAALDDLSRKLRSMDRAIKKEIRGEETSVDIDKLKDRCRELFERFLEGMSDGQEVSALFRYGNKEVLQSCYERICNLERSGLFRADTYEFDPAAAIWRYDLSALSSDGQRMAVDFILDDIFAAARGEGQKPETVMFVLLDESHKFVSPEADHIISVWAREARKFGLGLILSSQNLTDFPDEILAQMGTKFVLGVDPIFLDRAAKKLKVEPRRLEGIQTHKSSIIAIKNKGDSGTRWLDMTLV
>NZ_CP054622.1|WP_158282487.1|68297_68492_+|DUF1643-domain-containing-protein
MQMIDPEPSTANEDTRDRTVTHTEKWGRAVSFGALCMTKLSAIQSARAGVIRQAADPIRPDKNC
>NZ_CP054622.1|WP_109154440.1|69375_69621_-|DUF4167-domain-containing-protein
MSVSKPMGKQFSRPAFGKARSQSSLSQGGVRPASRVNGTAQQKQAQWLARAADAERSGDAVEAELCRQYAEHFFRVSRGQE
>NZ_CP054622.1|WP_109154439.1|70317_70791_+|helix-turn-helix-transcriptional-regulator
MSNNTKPKQTRGRKKQGANPIDAHVGARIRLRRTLLGMSQQKLGEAIGLTFQQVQKYERGANRISASRLFYLTRVLDVPLSFFFDDMPSHVAAAPVDEDGAAVIGEHSGSAYEPDPMVKRETLELVRAYYTISDLSVRRSLIDLAKALTRLSSSDPG
>NZ_CP054622.1|WP_109154438.1|70992_71502_-|hypothetical-protein
MTSTSDTTMPRAVNAAIMTSEAFVWWLHTMQWTHSKAAQELGLSMSRIDEMLRGAKRGTNTPTTIPAYMSLACAALAEGLPPFAWDEEKGVMPPEDFERWRAEMGQELELGKPVPFRQIAAMLGLSSVETPAYWARGVRRDGKPAPIYRDRALALNALLHGVMPWTAER
>NZ_CP054622.1|WP_109154437.1|71675_72317_-|HNH-endonuclease
MPRFAILIAAAMVASAAAQPVAAQQLPPAAAEMRKGYDRKAWGDWEPVEGCLTTRHAVLAATSLVQPRLRNCKVVAGLWRDAWTGAEITDPKNTDIDHVVPVQEAHDSGGYRWETAVRHRFFNDMENLVVTGREINQRKGAYGPEAWLPEGEAERCFFVRRWIYIKHKWQLTADERELQALQTVLHTCPVEQPVSRGGSPNPTAPITGSELYR
>NZ_CP054622.1|WP_109154436.1|72358_72634_-|hypothetical-protein
MSTLSRDAQVVAYRLFGMGAVTTITFEPPHFISSRALAAFDELARAGMIQPFDPKKLPDGSKGWQATPRIGRPWSEIPEPTEAELFPILSA
>NZ_CP054622.1|WP_146203841.1|72792_73263_-|hypothetical-protein
MDAMTMRNSKVPFPSLAEIEQNVIHCPAEWVRDHTPVTVATIDGPAHPRVVFGHGPMGVCLHEIAGETWWLVFWRDNGRLLSCWEDIHQAQTFADTLMRVPYIDEMLAGIDSPSGNLHPWLIGLKTAVIQLSLNGAAALDPTTNRPAQHFENRHCT
>NZ_CP054622.1|WP_109154434.1|73331_74735_-|DEAD/DEAH-box-helicase-family-protein
MSRRQLRPYQVEDREKILRVLRQRRHPLYVLPTGGGKTTTFVEVAEIVSGAGWPTLILTHRWELLSQASQTLHRLRLPHGLIYPGRMLAQEDVYVASIDTLASRLDNYAPFLTKIRLVIVDEAHHAVCGKYMRVFDALDRALRLGVTATPFRADGTGLGLVFDTAVEGPSMSWLTEQAYLVPVDIYAPPLHLDLRSVRISCGDYSTSELERILNNPDVTEPAVQQYARLASGRPTIFFCVSRAHCVHVAEQLTKAGYAAAPVDGKMPEEVRIARLKGLADGTLQALTSCELVSEGTDVPNVEVGVMLRPTKSTGLFQQQGGRFTRPSVGKVRGILIDMVGNTLEHGMLDEERAWSLDGGHEHRDVTPVHRCRSCFRVTRVDDRRQHCQECGEALPARKLAALSVPGDGKVNRRRVIASMSDDQLKTGGYRTLMRLASSVDDLERIARAKNYHRGWVRHQAKEKGLAA
>NZ_CP054622.1|WP_109154433.1|74762_74942_-|hypothetical-protein
MIPIVIQTDRFPVGNIEVYGRKSNADLICTMGGDATMNAINCITQAHATGKRGRHLAAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP054622_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054622_2

136640-136765

Orphan

Consensus_repeat	Method
CGACCAATCCGGTGACGGAGAGGGCGACGATGGTGGCGATAGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054622_2

>merge|NZ_CP054622|2|136640-136765|CRISPRCasFinder
CGACCAATCCGGTGACGGAGAGGGCGACGATGGTGGCGATAGCTCGGGGTCCGGCTCGGACACCGATGACAGCGCCGACGACGACCAATCCGGTGACGGAGAAGGCGACGATGGTGGCGATAGCTC

>NZ_CP054622|2|2|136640-136765|CRISPRCasFinder
CGACCAATCCGGTGACGGAGAGGGCGACGATGGTGGCGATAGCTC	GGGGTCCGGCTCGGACACCGATGACAGCGCCGACGA
CGACCAATCCGGTGACGGAGAAGGCGACGATGGTGGCGATAGCTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054622.1\|WP_136705942.1\|128079_128304_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154771.1\|134134_135577_+\|DUF3150-domain-containing-protein	unknown	unknown	gnl\|CDD\|378645
NZ_CP054622.1\|WP_109154763.1\|144235_144502_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_158282502.1\|129014_129158_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_158282501.1\|138683_138992_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154762.1\|144560_145091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154769.1\|137887_138583_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154761.1\|145096_146038_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|239321
NZ_CP054622.1\|WP_109154766.1\|140969_141272_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154774.1\|131175_132183_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|200235
NZ_CP054622.1\|WP_136705943.1\|130876_131095_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154760.1\|146195_146765_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154773.1\|132273_133224_+\|CbbQ/NirQ/NorQ-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|130711
NZ_CP054622.1\|WP_109154772.1\|133223_134021_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_158282500.1\|143035_143974_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320694
NZ_CP054622.1\|WP_109154776.1\|129627_130782_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP054622.1\|WP_109154765.1\|141349_142708_+\|toprim-domain-containing-protein	unknown	unknown	gnl\|CDD\|372578
NZ_CP054622.1\|WP_109154767.1\|140199_140595_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154777.1\|129252_129516_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154790.1\|128389_128935_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942

Protein	Function_ID	Function_description	E-value
NZ_CP054622.1\|WP_109154774.1\|131175_132183_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|200235	TIGR03033, hypothetical_protein, putative phage-type endonuclease. Members of this protein family are found often in phage genomes and in prokaryotic genomes in uncharacterized regions that resemble integrated prophage regions.	2.77424e-43
NZ_CP054622.1\|WP_109154761.1\|145096_146038_-\|DsbA-family-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.63601e-43
NZ_CP054622.1\|WP_109154773.1\|132273_133224_+\|CbbQ/NirQ/NorQ-C-terminal-domain-containing-protein	gnl\|CDD\|130711	TIGR01650, PD_CobS, cobaltochelatase, CobS subunit. This model describes Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit that functions in cobalamin biosynthesis. Cobalamin (vitamin B12) can be synthesized via several pathways, including an aerobic pathway (found in Pseudomonas denitrificans) and an anaerobic pathway (found in P. shermanii and Salmonella typhimurium). These pathways differ in the point of cobalt insertion during corrin ring formation. There are apparently a number of variations on these two pathways, where the major differences seem to be concerned with the process of ring contraction. Confusion regarding the functions of enzymes found in the aerobic vs. anaerobic pathways has arisen because nonhomologous genes in these different pathways were given the same gene symbols. Thus, cobS in the aerobic pathway (P. denitrificans) is not a homolog of cobS in the anaerobic pathway (S. typhimurium). It should be noted that E. coli synthesizes cobalamin only when it is supplied with the precursor cobinamide, which is a complex intermediate. Additionally, all E. coli cobalamin synthesis genes (cobU, cobS and cobT) were named after their Salmonella typhimurium homologs which function in the anaerobic cobalamin synthesis pathway. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	7.36057e-35
NZ_CP054622.1\|WP_158282500.1\|143035_143974_-\|M48-family-metalloprotease	gnl\|CDD\|320694	cd07335, M48B_HtpX_like, Peptidase M48 subfamily B HtpX-like membrane-bound metallopeptidase. This family contains peptidase M48 subfamily B, also known as HtpX, which consists of proteins smaller than Ste24p, with homology restricted to the C-terminal half of Ste24p. HtpX, an integral membrane (IM) metallopeptidase, is widespread in bacteria and archaea, and plays a central role in protein quality control by preventing the accumulation of misfolded proteins in the membrane. Its expression is controlled by the Cpx stress response system, which senses abnormal membrane proteins. HtpX participates in the proteolytic quality control of these misfolded proteins by undergoing self-degradation and eliminating them by collaborating with FtsH, a membrane-bound and ATP-dependent protease. HtpX contains the zinc binding motif (HEXXH), has an FtsH-like topology, and is capable of introducing endoproteolytic cleavages into SecY (also an FtsH substrate). However, HtpX does not have an ATPase activity and will only act against cytoplasmic regions of a target membrane protein. Thus, HtpX and FtsH have overlapping and/or complementary functions, which are especially important at high temperature; in E. coli and Xylella fastidiosa, HtpX is heat-inducible, while in Streptococcus gordonii it is not. Mutation studies of HtpX-like M48 metalloprotease from Leptospira interrogans (LA4131) has been shown to result in altered expression of a subset of metal toxicity and stress response genes.	1.77146e-38
NZ_CP054622.1\|WP_109154776.1\|129627_130782_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.67472e-21
NZ_CP054622.1\|WP_109154765.1\|141349_142708_+\|toprim-domain-containing-protein	gnl\|CDD\|372578	pfam13362, Toprim_3, Toprim domain. The toprim domain is found in a wide variety of enzymes involved in nucleic acid manipulation.	3.62385e-14
NZ_CP054622.1\|WP_109154771.1\|134134_135577_+\|DUF3150-domain-containing-protein	gnl\|CDD\|378645	pfam11348, DUF3150, Protein of unknown function (DUF3150). This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.	2.58677e-97
NZ_CP054622.1\|WP_109154790.1\|128389_128935_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	1.0862e-21

>NZ_CP054622.1|WP_109154771.1|134134_135577_+|DUF3150-domain-containing-protein
MKTLDKVDILSLGVTIWTGRKKLRAEDLNLGVGGELPSEDVASLGSKKVMDPDRLNVFHKLKKQMERLLESVGIRFLSGYAIPREKTEAVTEALDKIVREFLGEKSTFLAEYDKEVEEWIAKHPNFEDALRRAIEPASAVSHRLWADYSTFRISPADKSGSLDREVARMGNQLLAEVAQEANELYEKSVASRTEKSLSRRIAGPLKRMRDKLDGLSFLDGAVAPMVAGIDELIASFPEKGNIENGVYHEVVAKILILSDPDKIRSYAASRPATGGFGDLFASVEDGDIVDPDAAFPEEEDADEPEAVVHVTPAQVEATMAEGPSDLSIFDGLFGDGDDAASPATDGVVVEESNSDTATPAQAEDAGQVTPVAAEAVPTAPVEAVTETVELAQEADQKPVEQDARPGAEPASLGAEAASPASATPEEPEIAPNAEPAAVEAAVETEVDDTDDLDEAEDDGKLPDMIPPTAAPVEVVESFFF
>NZ_CP054622.1|WP_109154772.1|133223_134021_+|hypothetical-protein
MAGERWLLARYNRSDGTSKDWAVAVIGGDLFVRFGKTGQAMQKKPIAKSSWKSSGAAAEGRRRLWEQTEQGYEILGTCTFGADGKATDLQSNPAAEIPAAEEVTSRPATMKDADIFFEITAVSWQRLFEVMEVAVGRLSDHYECRWSTREGIPTGVPVIEGWTPAFDGHTGIGRVRHAGSLRRANGVGALLFLLTMRMVASADVTVNVVKADGGTIDKDLRKEAALLATFESSVDLITPAAEDAGLIPKRIKLSQIDTGQADYWF
>NZ_CP054622.1|WP_109154773.1|132273_133224_+|CbbQ/NirQ/NorQ-C-terminal-domain-containing-protein
MFKNFSVRDTFDQPKAPPQFTVEGFADDTNPLIPKRDDLYVFDRIKLRDILAFAADPMGDAMWIGGPYGAGKTSIVTQTLSRLNWPTMCFSWHKRREFADLVGHQAIVGGQTKFVHGPLPVCMTHGYALVINEADRGDAGELVGLNDILEGSPLVIPETNEVIHAHPKFRLFVTANSMGSGDASGLYATSIQVLDPAFLDRFRFISVGYLEPDIEESILERVAPKVPQAIRENMIKVANDIRRLFLGGEDGGSELSLTMSTRSLVRWARLTVAFKGAPNAVGFALERAFSNRAEPEQRQAIHQIAADVFGDLWEAN
>NZ_CP054622.1|WP_109154774.1|131175_132183_+|YqaJ-viral-recombinase-family-protein
MKIVNLRQGSAEWLAWRDQGVSASDIAVVLGISPYKTPWRLWAEKAGKVPPEDLSGNMFVAHGKRCEPAVRAWFEAKHDTMLFPACAEADHPIIRASFDGLTDDGIPVELKAPSDSVFDEVVALREDATAFRLYSCQVQAQIFVSGTDHGYLVFGRVIEKEDGSLVVDEAVEFRVDRDEAFIADMLQRAEAFMGAVNAGKEPKKDPSRDTYSPASDEEKQEWEVAAMEYRDAAAKIDALKAEIATLTLKQDNAKERLIKQMGQFAQAEASGILITRYISKGRVDYTALLEHHKVAVSDADLDKFRSASSESVKVSVKKAKPTGTQSVGPVVAAAA
>NZ_CP054622.1|WP_136705943.1|130876_131095_+|hypothetical-protein
MLSKIRKPEAVKGRALGWKATTQVFTFEDITAMATAALRSAGVTAIRSLPDEHLARYSPPFRNRDMGPDRLA
>NZ_CP054622.1|WP_109154776.1|129627_130782_+|phage-recombination-protein-Bet
MGEVISLQPRIAYPVEAKSYGVNEQTWRVLVESTFPSAKTAEGILLAVAYCQARKLDIMKRPVSIVPMWSSALRKYVETVWPGINEVQTTAARTGEFAGVDAPIYGPEITETFTAEVNDEDGPRGSKKTVTVTLKFPEWCTVTVYRLVGGVRCPFTGKVYWMETYSRKGARGVLPTDMWVKRPKGQLAKCAKADALRAAFPEECGGYSAEEMDGKVIEADEADIPRRSKRGVPQSATVMDIDPKTGEVLGGQPVPEPKPDLLQVGVEVKELIGKLVRRALPNGAWETAIGYAAERLKDNDLAYAKYVLRQAERSQSVSDKVRASTTELIQRAGAAGAWTGAKDYLSKLRNDGKLSDLDFEYAQAEVDLAQAEAVATAAAMKEAV
>NZ_CP054622.1|WP_109154777.1|129252_129516_+|hypothetical-protein
MTEIFKPVLKAFVLAMIALYAIYLVAGFLFALGEADTLRKAQENLLLRTKCDAEAMGVGYVARKPGEPDPCEPFRPKPAAEAPSSSN
>NZ_CP054622.1|WP_158282502.1|129014_129158_+|hypothetical-protein
MRVLQNIVFGVIVAAMAGVTVHQGLYAIIKTAEQEQMTMTARLSDNR
>NZ_CP054622.1|WP_109154790.1|128389_128935_+|single-stranded-DNA-binding-protein
MNIWHFNGRLGRDAELRTTQGGEKVLSFPVANDIGYGENKTTQWVDCSMWGTRAEKLAALLKKGREVSIAGEVTLREFERRDGSKDKALTVRVSELDLHGGQGQGRESDNSAGNSRSNGSVNGARAAGEPDHQGGSDRQGAAGRPGGSDRKGRQDRSRSQSSANRSQGSAAGDDGWDQIPF
>NZ_CP054622.1|WP_136705942.1|128079_128304_+|hypothetical-protein
MSLDLCAFEGVQSSELKLSLAADVYAGYRAGRYPWRTAHSALRRLAVPSDAINTGLHTETVHAVPAVIRPYLEA
>NZ_CP054622.1|WP_109154769.1|137887_138583_+|hypothetical-protein
MEIIEKMLISAVAFVCVTVLRLFFKEFRDHKDPTRAMEEVFRRLFQRRNKDVVPQPPTEPHLDRRAKRGRLVTVFGEAAFDATHQLGAWSVYARDNTKTLQKRGVWDKHIHTRDHASVEALALGIHLTVDEFDLKRGDMIVAQSASEHAVDVLSGHKTLRDNRKDEAATLAGVKAMLIGRGVSLTAKHVHDPGGDITKRFRASTLAEHHAQRALTAHLAERERGESNAKRA
>NZ_CP054622.1|WP_158282501.1|138683_138992_+|hypothetical-protein
MKISTQDVVPAEQLATPAYGHLAPVDLTGPVDEVWTQRETDVSKMGFQEYVEAVDGAMLRHWRVDTFDAQVDPDALSDALDQGVSPTEFALRWGSANAVSGH
>NZ_CP054622.1|WP_109154767.1|140199_140595_+|hypothetical-protein
MSKWFYEILDDQENRLSLSEVLSSDAPRISLIRRFDKGSVVSSRVVTYFDVDDYPETGLRNVECFHLCVRVMGHDGAIQTAQSLLTILRTLRETSVKDPASALATLREGDVNTILSASEARLRSSRIAAAA
>NZ_CP054622.1|WP_109154766.1|140969_141272_+|hypothetical-protein
MLTNERAPPVAPADWLLDTAWTDQDLVALCETILLETMAAAVDGRSCQRTRAEAWEWIDSDGENAFGFRICAKALGADPDELRAMFREQATRLGLIASHN
>NZ_CP054622.1|WP_109154765.1|141349_142708_+|toprim-domain-containing-protein
MNTLKADDVRNAAQKHGWMDIHERLIGNRLDGRIFQKAPGRGRSVCPIHGTSKSNGRGDGFRFFKDAETSGGGVCNTCGKFADGFRLLMAIEGWTFPQTLEEVAKVVGLDVGSGRVRKDAPPPRVRPKVEAKPPNDTFIRNLLRRAWAEAVPVTDPLAAPLMRYLMRRKLSIEPIAGLKNFRFHPSLDYVDDDGVVVGQFPALLMGVSDALGRPATIHRTYLTENGEKAPVEEPKKVFPLPNDRSLVMPVEHPRFDGMMVDGGGFIRMGEPQAGVLGVAEGFETALAVHLATGMTVWPCVCADLMERFIPPEGVEQIVVWGDLDRSGRGREAAQRLKASAWDMGRKALVFMPSLSIPDNAKGIDWHDVWVMHGQAGFPRFRTEQRAVMPMAVGDAGPRYTDRVERNLQPIHVQGPCSTPQSEGIRGLIAEPSMRSAAPRTGLLGRLRNFVKF
>NZ_CP054622.1|WP_158282500.1|143035_143974_-|M48-family-metalloprotease
MTINSACIIVEEGAATPFAWVALVLIGLPFAGWCQRFLRCLLFARQRAANALGAKVITLRMVERNKSVSPAEVALYHLVRSIAEQAGLRAAPMVGVVPSNAINAFAIGRRGKYFIAVNVGTVNRLSVDELAAVLGHEVGHVAHGDSFVKTLALAVQDSIATFLISPLAFAHSLVRASPALLLLLGAGLLFGIWHGQRDLAMACAVALFLPQLAWLVLLACRALIAQLDRWREFHADAAGAALTSPRSMAAALAKIAEDGYGKRVVTNPLHSPALASFGIKDTILFTGLAGKLFATHPPVQDRVDALISGRFL
>NZ_CP054622.1|WP_109154763.1|144235_144502_+|hypothetical-protein
MVNMILRTFLFAFFLQVVRSPLVMMVIGVGVGMYIEHTRPGTTAVALHWATGELGGALDAVNPLAGWLGTAPQPVQASGWDTGAYKLR
>NZ_CP054622.1|WP_109154762.1|144560_145091_-|hypothetical-protein
MPFPRMLAIGLLLMAAAGSATAAPQQNIWKNTEAATQAVAVAKRDLTIILRVLASSVSSTEFAVAMSPLTSEVRSRYRGQECLFYEEVTNSPFADNPYFAPIAGQIVQAALPAEFHNNKVVGKLASYLAYMAATNDPPACVCEPMPVEEVIDLCRKRFYPASPQDQARYDKAMLPP
>NZ_CP054622.1|WP_109154761.1|145096_146038_-|DsbA-family-protein
MKRPLLTLPVLLALSVATPAAAADVDSIVDALMNRVERLTQQNAKLTIENEQLRQTTQVRDRSDAMPENMGQALRKAAEAVTISPPAAVSPNTALDAKQLDEVLRQWVKDNAGYVFESVNKHLAEQQQARAPKSENFAARASDLFEKDAIKAGAVSSPKVRLVMFADYNCTYCKKAQPVVEELLANNPDLQVVYRELPILSPTSRLAAQAARAAAMQGKHDAFHRELYKLTEISEASILQLAARPDVGLDVDQLRKDMTSERVASLVTNDFNLGQSLGIQGTPFFYLDGGATMPGYAPTSQMQVMIDQARKKS
>NZ_CP054622.1|WP_109154760.1|146195_146765_+|hypothetical-protein
MIRTLAVAAVALLATLHFAEAAGTAPLNGSLSSRCGEESGGGIQDYASDPAASLVVEVTLFDSANRLIEQVPFVTRPNAEVSAHSIEKVKLALAGKDGAPPAIICTGHVTAVRVTPHTSQEVSVELVVEAAALRRSDLLAEQRKLNKVPEPDQVRVEETLHMQEGQRVVLKVGGNGPVRRIAVAFGRTR

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Crispr_ID: NZ_CP054622_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054622_3

167731-167972

Orphan

Consensus_repeat	Method
ATCTGCGCAGCCCCCCCGGTCTGCGCAAATCATGATCTGCGCAGACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP054622_3

>merge|NZ_CP054622|3|167731-167972|CRISPRCasFinder
CATCTGCGCAGCCCCCCGGTCTGCGCAGATCATAATCTGCGCAGACCATGGTCGTTCTTGTGCAGATGACCGGAAGAACAACCATACTTCAGATACATTGGTGGTTTTCATCTGCGCAGCCCCCCCGGTCTGCGCAAATCATGATCTGCGCAGACCGCCCTTGAATGTGCTCGGGGGTAGTGATAGCGTGGCTTTATCTGCGCAGCCCCCCCGGTCTGCGCAGATCATGATCTGCGCAGACC

>NZ_CP054622|3|3|167731-167972|CRISPRCasFinder
CATCTGCGCAGCCCCCCGGTCTGCGCAGATCATAATCTGCGCAGACC	ATGGTCGTTCTTGTGCAGATGACCGGAAGAACAACCATACTTCAGATACATTGGTGGTTTTC
ATCTGCGCAGCCCCCCCGGTCTGCGCAAATCATGATCTGCGCAGACC	GCCCTTGAATGTGCTCGGGGGTAGTGATAGCGTGGCTTT
ATCTGCGCAGCCCCCCCGGTCTGCGCAGATCATGATCTGCGCAGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054622.1\|WP_109155261.1\|174995_176894_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226699
NZ_CP054622.1\|WP_109155266.1\|172893_173157_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_158282521.1\|173518_174196_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226696
NZ_CP054622.1\|WP_109155271.1\|169024_169495_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154745.1\|160918_161962_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176237
NZ_CP054622.1\|WP_109155296.1\|163001_163946_-\|transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP054622.1\|WP_109155272.1\|168689_168986_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_149201616.1\|157827_158520_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP054622.1\|WP_109155383.1\|165114_165846_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP054622.1\|WP_109155382.1\|164129_165128_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP054622.1\|WP_109155267.1\|172085_172814_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109155273.1\|168072_168582_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109155268.1\|170879_171653_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|372608
NZ_CP054622.1\|WP_109154748.1\|158523_158811_+\|flagellar-transcriptional-regulator-FlhD	unknown	unknown	gnl\|CDD\|368356
NZ_CP054622.1\|WP_169055100.1\|162327_162852_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|259851
NZ_CP054622.1\|WP_136705951.1\|170158_170707_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054622.1\|WP_109154747.1\|158823_159468_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|368367
NZ_CP054622.1\|WP_149201615.1\|174201_174996_+\|protein-phosphatase-2C-domain-containing-protein	unknown	unknown	gnl\|CDD\|379325
NZ_CP054622.1\|WP_109154746.1\|159944_160886_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP054622.1\|WP_109155274.1\|166422_167418_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669

Protein	Function_ID	Function_description	E-value
NZ_CP054622.1\|WP_158282521.1\|173518_174196_+\|VWA-domain-containing-protein	gnl\|CDD\|226696	COG4245, TerY, Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only].	2.19706e-45
NZ_CP054622.1\|WP_109154745.1\|160918_161962_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176237	cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_CP054622.1\|WP_109155296.1\|163001_163946_-\|transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.19673e-18
NZ_CP054622.1\|WP_149201616.1\|157827_158520_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.57412e-11
NZ_CP054622.1\|WP_109155383.1\|165114_165846_+\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	7.40763e-56
NZ_CP054622.1\|WP_109155382.1\|164129_165128_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.27774e-10
NZ_CP054622.1\|WP_109155261.1\|174995_176894_+\|hypothetical-protein	gnl\|CDD\|226699	COG4248, COG4248, Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only].	2.50612e-36
NZ_CP054622.1\|WP_149201615.1\|174201_174996_+\|protein-phosphatase-2C-domain-containing-protein	gnl\|CDD\|379325	pfam13672, PP2C_2, Protein phosphatase 2C. Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase.	1.74011e-39
NZ_CP054622.1\|WP_109155268.1\|170879_171653_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|372608	pfam13455, MUG113, Meiotically up-regulated gene 113. This is a family of fungal proteins found to be up-regulated in meiosis.	3.08089e-11
NZ_CP054622.1\|WP_109154748.1\|158523_158811_+\|flagellar-transcriptional-regulator-FlhD	gnl\|CDD\|368356	pfam05247, FlhD, Flagellar transcriptional activator (FlhD). This family consists of several bacterial flagellar transcriptional activator (FlhD) proteins. FlhD combines with FlhC to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.	0.000679908
NZ_CP054622.1\|WP_169055100.1\|162327_162852_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|259851	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins. This domain model summarizes a family of DNA-binding domains unique to bacteria and represented by the Hin protein of Salmonella. The basic HTH domain is a simple fold comprised of three core helices that form a right-handed helical bundle. The principal DNA-protein interface is formed by the third helix, the recognition helix, inserting itself into the major groove of the DNA. A diverse array of HTH domains participate in a variety of functions that depend on their DNA-binding properties. HTH_Hin represents one of the simplest versions of the HTH domains; the characterization of homologous relationships between various sequence-diverse HTH domain families remains difficult. The Hin recombinase induces the site-specific inversion of a chromosomal DNA segment containing a promoter, which controls the alternate expression of two genes by reversibly switching orientation. The Hin recombinase consists of a single polypeptide chain containing a C-terminal DNA-binding domain (HTH_Hin) and a catalytic domain.	1.54481e-06
NZ_CP054622.1\|WP_109154747.1\|158823_159468_+\|transcriptional-regulator	gnl\|CDD\|368367	pfam05280, FlhC, Flagellar transcriptional activator (FlhC). This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.	5.42247e-14
NZ_CP054622.1\|WP_109154746.1\|159944_160886_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.63611e-32
NZ_CP054622.1\|WP_109155274.1\|166422_167418_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	9.23497e-62

>NZ_CP054622.1|WP_109155274.1|166422_167418_-|ParM/StbA-family-protein
MFAIGLDIGYSNLKLAFGKVSDDGLAKPAVTRVLPAGAGRLSDLPLRMGKADGDTDALVVNVNGEKWAAGVDQARLETSVRELHADYPASDAYRALFHAALLMGEHDTVDQLITGLPVSQFLDKDLRARLSDRLTGQHQVTAGRAITVKNTLVVPQPFGAYLDLLNTVEDAAELEESRIMVIDPGFFSVDWIAIEEGEIRKASSGTSKRAMSVLIETVNSLIQEDHGGSAGIERLEQAVRQGKTSVPVFGTPVELAPYMDKAAQRVAVEALKEMKQQLRANDRAVDIVLIVGGGAKAYEAAARDLFPKSRPVLPQEPVLANARGFWSAAVQ
>NZ_CP054622.1|WP_109155383.1|165114_165846_+|ATP-binding-protein
MERHELMALMAELSLAGMRAAYDEVMSDGLKRQRTVQQILGDLLAAERAEKQARSIRYQLGAAKLPLAKTLAEFDFTASPLNEGLVRELHDGGFLETQRNAVFIGGTGTGKTHMCIAITANCVRRGARARFFNVIDLVNRLEAEARTGQAGKLADQLTRVDLVVLDELGYLPFSQSGGQLLFHALSQLYSRTSVLITTNLSFAEWPTVFAGDAKMTTALLDRLTHHCDILETGNESWRFKNRS
>NZ_CP054622.1|WP_109155382.1|164129_165128_+|DDE-type-integrase/transposase/recombinase
MVFDAHARAAAFYGGLCERGIYDNMKTAVDAVFVGKERRFNRRFAQMCSHYLVEPVACTPASGWEKGQVENQVGTLRQRLFTPRLRAKTLEEVNERLHDEVIVWAQQTSHPEDKSRTVWEVFQAEQPALITVSDPFDGFHEATLSVSKTCLIHFDRNRYSVAAIAAGKPVQVRAYATRIVVWFNGAIVAEHPRAFGHGHTRYNPLHYLPVLVRKPGALRNGAPFRDWDLPPALATVRTRLGRGDDADRQFVGVLAAILTDGLEAVEVACREALASGTHSRDVILNILARRHDVTPAPAMAVPTALTLSIEPAADCGRYDRLRAVREGCHGTA
>NZ_CP054622.1|WP_109155296.1|163001_163946_-|transposase
MLESTRAVGIDCGKDFLDVAVFPGADRLRVTNTPEGHRNLVAWVAERSISVVGLEASGGYERPSRDALRAAGVSVRVFDPARVRFFAKARGQRAKNDRLDASVIAEFTATQTTVPSLPTDPVREELAGLIKARHLLVDKRADLNKSISQAPVAAQEALTRAVEHLAREIAGLDAAIARATGAQPTLARTARDLQTAPGIGPVTAVTLAVLLPELGRTSGQKIAALAGVAPFDHDSGKRGGQRHISGGRAGVRHALYMAALSAATRTGGVLADFYTGLIRRGKPPKVALTACMRKLIVRLNAMLAKGATWEAKPA
>NZ_CP054622.1|WP_169055100.1|162327_162852_+|helix-turn-helix-domain-containing-protein
METIARIRREHAKGKSIRAIARSLKVSRETVTKYLRSGETAPRYERQHQPLPKLAGFQEELERLITENERRPARDRLDYLGLFGRLKDAGFQGGYDTVRRYIKRFKQRQPPSGPVNAYVPLTFAPAEAYQFDWAEEWIILDGVTTKVQVAHARLCHSRMPFVAVYPRQTQEQPC
>NZ_CP054622.1|WP_109154745.1|160918_161962_+|NAD(P)-dependent-alcohol-dehydrogenase
MPKAIVLNDKPGFDNLILVERPLPQLRRQELLIRVRATSLNYRDVEIVRGSYHTRFALPLVPLSDGVGEVVATGDEVTRFKVGDRVCSTFWQRWVAGPFEMAEPSYQRGGPRDGLLSEYALLDEQAAVLAPRNLSDVEAATLPCAGVTAWHALISEGGIKAGETVLVQGTGGVSLFALQFAAVSGARVIVTSSSDAKIDRAKTLGAFSGVNYKTNPNWSDTVLELTEGRGVDHVIEVGGPGSFTQSLKAVCRGGQINVIGYLGGTEGAINPLDIFRRQVRVRGIPVGSRASFEAMVRAIEANNLKPVVDRAFPWTDVAEAMRYLESGAHFGKVVLEHGCPSSAAKSI
>NZ_CP054622.1|WP_109154746.1|159944_160886_-|LysR-family-transcriptional-regulator
MTLSNLTLKFIICKKIMLETIMLNEMRTFILFAEEGSVQKVARRLPLTQPAVSRQIQRLEEAVGTSLLDRRQKPPVLTPTGREVLTRCREILASYASMKELAVAPEPAGVLRLGLANGLAHDSLAEAICEAIAAFPKVTLRLKSGWSASLAEEHRLGVLDAAIVLSDGPPVYAAEVLGTERLAVISGTAIRHTSAAIMTAPWVLSPEPCDARRLLTQVLSRDGRIPVVAAEIENGGLQLALVRKGLGLGLMPERLLRQAKPTGIVPIATPGISLCLDVALLRSPHLGALATVVDALARVTRQALDHRSDIQAA
>NZ_CP054622.1|WP_109154747.1|158823_159468_+|transcriptional-regulator
MNRLSQHAQMALAIKLIVFGVRTSIVQLHTGISAPILRALYREINNGEAPVSGQMAESDGVVSTRQDVIEASLFLNLYVHVGTETVFRTINIDALIRAYGLFLEFRAEAGLVAVPKIGPTEAWILVRDLRIRDLSLRSCECGCTYAVVHKHRLLPRCPACGADNEPAINSSEGATRVGRPTSIVSSARAFFADEADRSSKPLSFRSVSTIANPS
>NZ_CP054622.1|WP_109154748.1|158523_158811_+|flagellar-transcriptional-regulator-FlhD
MTNKFAEDFRDLNRHMLLLLQRVAQEDLGEATARFGVTRAFAEDIRDVSISKLQEMASESLCLFQPRPMMPDALEKGEAPSKQLALLRSVSVRQG
>NZ_CP054622.1|WP_149201616.1|157827_158520_+|transglycosylase-SLT-domain-containing-protein
MIKQSFEVSRASKGRRHTMWPVKHYDKGASKPGSPQQKRRLMSAVAAIGTAMMAAISSPVSAFSLSGTAWEVAAAEEGIDPYLLFSVALVESARHENRFARPWPWALNGPKGNFYGDDRSEAERHLRSMPSADLQRTAIGMMQVYVGAHGKHVTDPADLLDPVLNLRMGATILRESIASKPGDLALGIGRYNAWQNEPAARAYGQRVLAVYQRLKQLTGSGLSVSSLWND
>NZ_CP054622.1|WP_109155273.1|168072_168582_+|hypothetical-protein
MTLEDEIKALRERTGASFTDLLRALLLSEGDVLETEARGLSSGFYGECERVRQERPSSEHNRYLARVERRNVAISIRWAKVRFFGGKGSRRRMDENVPRGDTAQYPMTSFPDAQDWERVLISDLEEKFGPLRSRSSMVAKMAVLGAAYRQVEEGARQRQAALEADTAKF
>NZ_CP054622.1|WP_109155272.1|168689_168986_+|hypothetical-protein
MLDAELELYGDLFVACRFHEVGLTFEEFLRHPMKAIATLENGPAVQRWGRMRAVSATKLAKSACGGPPPALTNEARRQAGIAEHERFDAEVRRFLAVG
>NZ_CP054622.1|WP_109155271.1|169024_169495_+|hypothetical-protein
MERLVIGKIRNRVREREDADRLLWLRRENMPAELARGRLVLSEEEVRTNLPVPLLGRPDQVFMSDAGLLVPVDTKTRRLPRVFLSDIVQLSVYGTILNFTTDPRFAGRDVAAHGYVRMPTLYGVAWARVALLKPAAVVELWADHWRRTEAQATQAA
>NZ_CP054622.1|WP_136705951.1|170158_170707_+|hypothetical-protein
MLKEFRKATGGDASEGVKEILDLVKMDWPGAAKAMERLGKFLGDTVTVPGLEGHKPLAFAAYEKALAAYQEAMGQEDPVRLAALIETLLTEAADGLTKVEIVDAVGRVWNPADGKSVSEWNKDRNKIEVREGSQPMSKEDLYDILMTVTTDGTTRQIIAEAKTYYPEGTVPDPFPKPTTSLH
>NZ_CP054622.1|WP_109155268.1|170879_171653_+|GIY-YIG-nuclease-family-protein
MFVYVIGPSAVGPVKIGHSVDPTGRCADLQTGNPERLAVLLQVECGDHAPAIEAAVHVALSDHATDLTRVTEWFCVSAAEAERVILEQWEEVKANPPDMVDDVDLRTAPAPGCDRSPPSAIPFYEWLLWRPSYRDLADDLLSDPDRPKGGRSFWVLRDRLVAAGAPLDALLMLRHAWKEHVACRRLTGEELRHIAPGNVGLRVVNEPGFALLLRHGPEGEFAGAVLTRARWETAGELQAARVVRDRSLAAWLPSVIA
>NZ_CP054622.1|WP_109155267.1|172085_172814_+|hypothetical-protein
MADLKTYTAECSASSEYSTIPAVVVFSIDEAKAREIIRLAGLVKEHDLLRVKKFDYDAVWLNTEPAPSDEDAEDCDEEPSEIDDDDVSTECDCLNVSEDSFWFSCILKHTDTEVCGAHQSVWELAEHFGLEFGQRSQASRVEELWHNHAMVAGFVNRYCCGPTPAGIVLTANKALIIASEDRRTFYRVSEVNGGVCATKTCDLINLADPEAESDLVGTYSGDNAAILAFSAVCRLQGWTAVL
>NZ_CP054622.1|WP_109155266.1|172893_173157_+|hypothetical-protein
MTNLVLVASSDLQVGDFVDLEGDLYADPRHNHPAFDCLYMEVVEVERESDACVAIGFEGFDIVGFPPDHVLKVLRPATSASSNDPTS
>NZ_CP054622.1|WP_158282521.1|173518_174196_+|VWA-domain-containing-protein
MNGIPGLEAQLEENTSQRTPCILVLDASSSMDGKRIQSLNDGLMAFEEALKADPVARNRVAVSIVCIGRDNLAQVMTPWTDAMHFQAPTIYANGSTPLGAGARLALSELESYKASLRNMGIPYTRPWVLIVSDGEPTDADWEDAAEEMRTAAVDKKAIVFPLAVEGASTEKLAAFNAPGKGVLRLHGLAFRELFVWLSASVSSASQAAAGTKMQIEAPRMITIET
>NZ_CP054622.1|WP_149201615.1|174201_174996_+|protein-phosphatase-2C-domain-containing-protein
MTSPARADRVSGADIAPWRVVGASVVGPSHVRAGLPNQDAYAFDVVDGALIVVVCDGAGSAASAEVGAGLMVRALLDNLRGVSSTASVPLVVWATAAVRHARQCLEEEAVRAGLPLSDYHTTVVAAVLLPQGDGFVLHIGDGAAAASVSLAEDGAANWKGASVSAPENGEYANETFFVTQRCWADHLRITPLRGVTSILLMTDGAAGFALHADGSPKAGFCEAVDRHLRRVNHADGAKALAASLASEKATHNPDDKTLVWARRY
>NZ_CP054622.1|WP_109155261.1|174995_176894_+|hypothetical-protein
MQLFLHDGSGAQRKPITVESGQIGAGGAGSVRRVVGDDRHVVKLYHKPDDGLAGKVAAMLAAPPQQAVVQHNGTDVVELAWPNALVRDGSGRFLGYRMRRVDLSSATTLEEILTRAARSQAGHRDDLGFRLFVARNLASVAADVHAAGHSIIDLKPPNVLVYRDSGFIGLIDCDGFSIRSRADVYPAEMFTIEYLAPEGHSSTPGRLGIEQDAFAFAVIAFQLLNEGIHPFQGRPGPASRESDPTDIAGAIVAGIYPYRNDRPEPRKVPTVQSIHRGFPPALRSAFDRAFTKRPADRPNMVEWRDLLDALTGQVKTCSTNPEHQFIGDSCAYCAREQERAAEKSRQRAAPPPPLTKPSTPRRAQPAAQPQPASVFGAPRAGNARTRSGTNTGPFVVVNNTASPAAGGARASLIPGVIAAGVLVILGLGYFLVSGSDSSPSSDTHVRRTRQVMTAAGGATVRSLDGSEEMAKLAGGKLVPLADGQFCGLPADKPVGIRLSDGRVGLVSLTSLSSRDRQRLTDYCLDSPGGTPGTPTNVQSVDAPTNGDAPAKPAQSQRRGLQVMVVLGGAPVFEADRQTVIARLPGDTLVDLAGNKACGDGWAAKVRLADGREGYLPYDAMSSRDRSRLPACS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054622_1	1.1\|66519\|34\|NZ_CP054622\|CRISPRCasFinder	66519-66552	34	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	66519-66552	0	1.0
NZ_CP054622_1	1.1\|66519\|34\|NZ_CP054622\|CRISPRCasFinder	66519-66552	34	NZ_CP039651	Azospirillum sp. TSA2s plasmid p1	45596-45629	0	1.0
NZ_CP054622_2	2.1\|136685\|36\|NZ_CP054622\|CRISPRCasFinder	136685-136720	36	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	136685-136720	0	1.0
NZ_CP054622_2	2.1\|136685\|36\|NZ_CP054622\|CRISPRCasFinder	136685-136720	36	NZ_CP039651	Azospirillum sp. TSA2s plasmid p1	117501-117536	0	1.0
NZ_CP054622_3	3.2\|167887\|39\|NZ_CP054622\|CRISPRCasFinder	167887-167925	39	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	167887-167925	0	1.0
NZ_CP054622_3	3.2\|167887\|39\|NZ_CP054622\|CRISPRCasFinder	167887-167925	39	NZ_CP039651	Azospirillum sp. TSA2s plasmid p1	148703-148741	0	1.0
NZ_CP054622_3	3.1\|167778\|62\|NZ_CP054622\|CRISPRCasFinder	167778-167839	62	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	167778-167839	2	0.968
NZ_CP054622_3	3.1\|167778\|62\|NZ_CP054622\|CRISPRCasFinder	167778-167839	62	NZ_CP039651	Azospirillum sp. TSA2s plasmid p1	148594-148655	2	0.968

1. spacer 1.1|66519|34|NZ_CP054622|CRISPRCasFinder matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 0, identity: 1.0

aacgggtggacaagggcggtgcgcccgctcctct	CRISPR spacer
aacgggtggacaagggcggtgcgcccgctcctct	Protospacer
**********************************

2. spacer 1.1|66519|34|NZ_CP054622|CRISPRCasFinder matches to NZ_CP039651 (Azospirillum sp. TSA2s plasmid p1) position: , mismatch: 0, identity: 1.0

aacgggtggacaagggcggtgcgcccgctcctct	CRISPR spacer
aacgggtggacaagggcggtgcgcccgctcctct	Protospacer
**********************************

3. spacer 2.1|136685|36|NZ_CP054622|CRISPRCasFinder matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 0, identity: 1.0

ggggtccggctcggacaccgatgacagcgccgacga	CRISPR spacer
ggggtccggctcggacaccgatgacagcgccgacga	Protospacer
************************************

4. spacer 2.1|136685|36|NZ_CP054622|CRISPRCasFinder matches to NZ_CP039651 (Azospirillum sp. TSA2s plasmid p1) position: , mismatch: 0, identity: 1.0

ggggtccggctcggacaccgatgacagcgccgacga	CRISPR spacer
ggggtccggctcggacaccgatgacagcgccgacga	Protospacer
************************************

5. spacer 3.2|167887|39|NZ_CP054622|CRISPRCasFinder matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 0, identity: 1.0

gcccttgaatgtgctcgggggtagtgatagcgtggcttt	CRISPR spacer
gcccttgaatgtgctcgggggtagtgatagcgtggcttt	Protospacer
***************************************

6. spacer 3.2|167887|39|NZ_CP054622|CRISPRCasFinder matches to NZ_CP039651 (Azospirillum sp. TSA2s plasmid p1) position: , mismatch: 0, identity: 1.0

gcccttgaatgtgctcgggggtagtgatagcgtggcttt	CRISPR spacer
gcccttgaatgtgctcgggggtagtgatagcgtggcttt	Protospacer
***************************************

7. spacer 3.1|167778|62|NZ_CP054622|CRISPRCasFinder matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 2, identity: 0.968

atggtcgttcttgtgcagatgaccggaagaacaaccatacttcagatacattggtggttt	CRISPR spacer
atggtcgttcttgtgcagatgaccggaagaacaaccatacttcagatacattggtggttt	Protospacer
************************************************************

8. spacer 3.1|167778|62|NZ_CP054622|CRISPRCasFinder matches to NZ_CP039651 (Azospirillum sp. TSA2s plasmid p1) position: , mismatch: 2, identity: 0.968

atggtcgttcttgtgcagatgaccggaagaacaaccatacttcagatacattggtggttt	CRISPR spacer
atggtcgttcttgtgcagatgaccggaagaacaaccatacttcagatacattggtggttt	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 66448

Enterobacteria_phage(14.29%)

transposase,integrase

attL 27712:27729|attR 45866:45883

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158282460.1\|2061_2397_+	copper-binding protein	NA	NA	NA	NA
WP_109153229.1\|2541_3009_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_136706029.1\|3037_3424_+	hypothetical protein	NA	NA	NA	NA
WP_109153193.1\|3548_4793_+	hypothetical protein	NA	NA	NA	NA
WP_109153194.1\|5251_6049_-	hypothetical protein	NA	NA	NA	NA
WP_109153195.1\|6062_6749_-	hypothetical protein	NA	NA	NA	NA
WP_098736704.1\|7156_7714_+	recombinase family protein	E5FFF9	Burkholderia_phage	3.2e-30	38.3
WP_098736705.1\|7713_10716_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	7.7e-264	49.1
WP_174757563.1\|10919_11072_-	hypothetical protein	NA	NA	NA	NA
WP_149201211.1\|11201_12020_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	7.2e-23	34.9
WP_149201212.1\|13323_14481_-	porin	NA	NA	NA	NA
WP_149201213.1\|14818_15880_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_149201214.1\|15934_16231_-	Dabb family protein	NA	NA	NA	NA
WP_149201215.1\|16244_17438_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_149201234.1\|17451_19002_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.2e-14	27.3
WP_149201216.1\|19263_20334_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_149201235.1\|20531_21623_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_149201217.1\|21675_22668_-	inositol 2-dehydrogenase	NA	NA	NA	NA
WP_149201218.1\|22750_23629_-	TIM barrel protein	NA	NA	NA	NA
WP_149201219.1\|23699_24614_-	intradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_149201220.1\|25183_25681_+\|transposase	transposase	NA	NA	NA	NA
WP_149201221.1\|26646_28314_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.8e-111	42.5
27712:27729	attL	NA	NA	NA	NA
WP_149201222.1\|29728_29962_-	hypothetical protein	NA	NA	NA	NA
WP_149201223.1\|30756_31671_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149201224.1\|32262_34413_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	6.6e-07	72.7
WP_149201236.1\|34758_35439_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_149201225.1\|35452_36091_+	3-oxoacid CoA-transferase subunit B	NA	NA	NA	NA
WP_149201226.1\|36104_37313_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_149201227.1\|37440_38862_+\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	3.7e-67	34.6
WP_149201221.1\|40298_41966_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.8e-111	42.5
WP_149201228.1\|43704_45387_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_149201229.1\|45379_46255_+	TniB family NTP-binding protein	NA	NA	NA	NA
45866:45883	attR	NA	NA	NA	NA
WP_149201230.1\|46260_47757_+	TniQ family protein	NA	NA	NA	NA
WP_149201231.1\|49465_50404_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.1e-30	43.4
WP_109153162.1\|50978_52049_+	hypothetical protein	NA	NA	NA	NA
WP_136705919.1\|52327_53446_+	response regulator	NA	NA	NA	NA
WP_109153164.1\|53584_54535_-	glycosyltransferase	NA	NA	NA	NA
WP_174757564.1\|54586_56770_-	response regulator	A0A1V0SGX0	Hokovirus	4.4e-43	29.2
WP_109153166.1\|56799_57330_-	oxidoreductase	NA	NA	NA	NA
WP_109153167.1\|57384_58035_-	response regulator transcription factor	NA	NA	NA	NA
WP_109153168.1\|58441_59017_+	hypothetical protein	NA	NA	NA	NA
WP_109153169.1\|59071_59329_+	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
WP_109153170.1\|59548_61192_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.3e-99	46.5
WP_109153171.1\|61271_61619_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.6e-32	56.1
WP_109153172.1\|61615_62026_-\|transposase	transposase	NA	NA	NA	NA
WP_109153174.1\|62672_62897_+	hypothetical protein	NA	NA	NA	NA
WP_109153175.1\|62902_63751_+	hypothetical protein	NA	NA	NA	NA
WP_109153176.1\|64488_65571_+	AAA family ATPase	A0A240F4U1	Ochrobactrum_phage	8.1e-14	29.1
WP_109153177.1\|65563_66448_+	ParB/RepB/Spo0J family partition protein	S5VTK0	Leptospira_phage	6.2e-12	34.6

DBSCAN-SWA_2

70317 : 81193

Agrobacterium_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109154439.1\|70317_70791_+	helix-turn-helix transcriptional regulator	A0A223W054	Agrobacterium_phage	8.2e-19	38.7
WP_109154438.1\|70992_71502_-	hypothetical protein	NA	NA	NA	NA
WP_109154437.1\|71675_72317_-	HNH endonuclease	A0A1S6L216	Vibrio_phage	6.5e-19	36.3
WP_109154436.1\|72358_72634_-	hypothetical protein	NA	NA	NA	NA
WP_146203841.1\|72792_73263_-	hypothetical protein	NA	NA	NA	NA
WP_109154434.1\|73331_74735_-	DEAD/DEAH box helicase family protein	A0A2I5ARD8	Synechococcus_phage	5.9e-65	36.8
WP_109154433.1\|74762_74942_-	hypothetical protein	NA	NA	NA	NA
WP_136705929.1\|75114_75600_-	hypothetical protein	NA	NA	NA	NA
WP_109154431.1\|75709_76162_-	hypothetical protein	NA	NA	NA	NA
WP_158282486.1\|76229_78341_-	ParB N-terminal domain-containing protein	A0A160DCL1	Gordonia_phage	1.0e-12	28.4
WP_109154429.1\|78751_79381_-	hypothetical protein	NA	NA	NA	NA
WP_109154428.1\|79404_79878_-	hypothetical protein	NA	NA	NA	NA
WP_109154427.1\|80050_81193_-	hypothetical protein	H9YRR5	environmental_Halophage	1.1e-08	28.2

DBSCAN-SWA_3

99468 : 103197

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201617.1\|99468_100752_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.3e-46	36.1
WP_109154411.1\|101136_103197_-	recombinase family protein	A0A1B2LRQ3	Wolbachia_phage	5.5e-11	25.4

DBSCAN-SWA_4

128389 : 132183

Pseudoalteromonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109154790.1\|128389_128935_+	single-stranded DNA-binding protein	A0A1J0GVQ0	Pseudoalteromonas_phage	2.7e-18	46.3
WP_158282502.1\|129014_129158_+	hypothetical protein	NA	NA	NA	NA
WP_109154777.1\|129252_129516_+	hypothetical protein	NA	NA	NA	NA
WP_109154776.1\|129627_130782_+	phage recombination protein Bet	A0A2H4JAQ4	uncultured_Caudovirales_phage	2.6e-34	40.1
WP_136705943.1\|130876_131095_+	hypothetical protein	NA	NA	NA	NA
WP_109154774.1\|131175_132183_+	YqaJ viral recombinase family protein	A0A0P0YN86	Yellowstone_lake_phycodnavirus	2.5e-09	28.1

DBSCAN-SWA_5

135650 : 137795

Rhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109154770.1\|135650_137795_+	VWA domain-containing protein	L7TNG1	Rhizobium_phage	2.4e-09	25.8

DBSCAN-SWA_6

141349 : 142708

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109154765.1\|141349_142708_+	toprim domain-containing protein	A0A2R2Z336	Escherichia_phage	1.9e-07	26.7

DBSCAN-SWA_7

159944 : 204190

Wolbachia_phage(16.67%)

transposase,integrase

attL 150834:150851|attR 182850:182867

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
150834:150851	attL	NA	NA	NA	NA
WP_109154746.1\|159944_160886_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.2e-05	31.4
WP_109154745.1\|160918_161962_+	NAD(P)-dependent alcohol dehydrogenase	K7Z7U2	Megavirus	7.9e-06	25.3
WP_169055100.1\|162327_162852_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_109155296.1\|163001_163946_-\|transposase	transposase	Q75QL1	Wolbachia_phage	5.2e-25	35.5
WP_109155382.1\|164129_165128_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_109155383.1\|165114_165846_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	4.0e-33	34.9
WP_109155274.1\|166422_167418_-	ParM/StbA family protein	NA	NA	NA	NA
WP_109155273.1\|168072_168582_+	hypothetical protein	NA	NA	NA	NA
WP_109155272.1\|168689_168986_+	hypothetical protein	NA	NA	NA	NA
WP_109155271.1\|169024_169495_+	hypothetical protein	NA	NA	NA	NA
WP_136705951.1\|170158_170707_+	hypothetical protein	NA	NA	NA	NA
WP_109155268.1\|170879_171653_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_109155267.1\|172085_172814_+	hypothetical protein	NA	NA	NA	NA
WP_109155266.1\|172893_173157_+	hypothetical protein	NA	NA	NA	NA
WP_158282521.1\|173518_174196_+	VWA domain-containing protein	NA	NA	NA	NA
WP_149201615.1\|174201_174996_+	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_109155261.1\|174995_176894_+	hypothetical protein	NA	NA	NA	NA
WP_109155259.1\|176900_177371_-	hypothetical protein	NA	NA	NA	NA
WP_109155258.1\|177420_177603_-	hypothetical protein	NA	NA	NA	NA
WP_109155256.1\|177713_178643_-	hypothetical protein	NA	NA	NA	NA
WP_109155255.1\|178799_180401_+	DNA cytosine methyltransferase	Q56BS1	Escherichia_virus	1.9e-14	28.6
WP_136705954.1\|180619_180922_+	hypothetical protein	NA	NA	NA	NA
WP_109155252.1\|180933_182133_+	site-specific DNA-methyltransferase	S4VR68	Pandoravirus	6.9e-14	28.8
WP_109155250.1\|182363_182783_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_136705955.1\|182917_183553_+	HD domain-containing protein	NA	NA	NA	NA
182850:182867	attR	NA	NA	NA	NA
WP_136705956.1\|183750_184071_-	hypothetical protein	NA	NA	NA	NA
WP_109155247.1\|184054_184369_+	hypothetical protein	NA	NA	NA	NA
WP_109155354.1\|184720_185464_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.9e-60	48.3
WP_109155353.1\|185475_187020_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	8.9e-115	43.4
WP_109155067.1\|187535_187976_+	hypothetical protein	NA	NA	NA	NA
WP_109155066.1\|188084_188897_+	hypothetical protein	NA	NA	NA	NA
WP_109155065.1\|189007_189508_+	hypothetical protein	NA	NA	NA	NA
WP_136705957.1\|189629_189896_+	hypothetical protein	NA	NA	NA	NA
WP_109155063.1\|189973_190522_+	hypothetical protein	NA	NA	NA	NA
WP_109155062.1\|190619_190886_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_109155061.1\|190937_191225_-	hypothetical protein	NA	NA	NA	NA
WP_158282512.1\|191283_193272_-	DNA cytosine methyltransferase	H6WBP2	Rhodobacter_phage	5.2e-75	32.9
WP_136705958.1\|193420_194287_+	hypothetical protein	NA	NA	NA	NA
WP_109155058.1\|194593_196576_+	hypothetical protein	NA	NA	NA	NA
WP_136705959.1\|196706_197351_+	hypothetical protein	NA	NA	NA	NA
WP_109155056.1\|197404_197662_+	hypothetical protein	NA	NA	NA	NA
WP_174757566.1\|197964_198930_+	hypothetical protein	A0A076GD02	Sinorhizobium_phage	2.5e-46	46.9
WP_174757567.1\|199252_200312_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_149201614.1\|200638_201049_+\|transposase	transposase	NA	NA	NA	NA
WP_103041599.1\|201045_201393_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.8e-32	56.1
WP_149201861.1\|203005_204190_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	3.4e-05	27.4

DBSCAN-SWA_8

214030 : 268274

Stx2-converting_phage(14.29%)

transposase,integrase

attL 232016:232033|attR 260211:260228

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201614.1\|214030_214441_+\|transposase	transposase	NA	NA	NA	NA
WP_103041599.1\|214437_214785_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.8e-32	56.1
WP_174757572.1\|214864_216493_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.9e-99	47.0
WP_109154162.1\|216932_219116_-	ATP-dependent RecD-like DNA helicase	A0A1P8DII4	Virus_Rctr197k	7.8e-64	34.0
WP_109154126.1\|219289_219775_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	2.3e-16	44.2
WP_109154127.1\|219966_221022_+	phosphoadenosine phosphosulfate reductase family protein	H7BVI4	unidentified_phage	1.8e-37	28.5
WP_109154128.1\|221113_221401_+	hypothetical protein	NA	NA	NA	NA
WP_109154129.1\|221455_221923_-	hypothetical protein	NA	NA	NA	NA
WP_109154131.1\|222820_224005_-	ATP-binding protein	NA	NA	NA	NA
WP_109154132.1\|224125_224734_-	hypothetical protein	NA	NA	NA	NA
WP_109154163.1\|225408_226635_+	AAA family ATPase	A0A291LA07	Bordetella_phage	4.5e-69	41.6
WP_109154133.1\|226801_227170_+	hypothetical protein	NA	NA	NA	NA
WP_109154134.1\|227279_228020_+	hypothetical protein	NA	NA	NA	NA
WP_109154135.1\|228019_228436_+	hypothetical protein	NA	NA	NA	NA
WP_109154136.1\|228432_229017_+	hypothetical protein	NA	NA	NA	NA
WP_109154137.1\|229297_230263_+	hypothetical protein	NA	NA	NA	NA
WP_158282479.1\|230259_230490_+	DUF4314 domain-containing protein	NA	NA	NA	NA
WP_109154139.1\|230638_231322_+	hypothetical protein	NA	NA	NA	NA
WP_109154140.1\|231568_232351_+	hypothetical protein	Q6JIG5	Burkholderia_virus	2.8e-16	40.1
232016:232033	attL	NA	NA	NA	NA
WP_109154141.1\|232451_232988_-	hypothetical protein	NA	NA	NA	NA
WP_109154142.1\|233474_238007_+	strawberry notch family protein	A0A076FMQ0	Aureococcus_anophage	8.1e-15	23.0
WP_109154143.1\|238451_238682_-	hypothetical protein	NA	NA	NA	NA
WP_109154144.1\|238737_239214_+	hypothetical protein	NA	NA	NA	NA
WP_136706010.1\|239231_239648_+	hypothetical protein	NA	NA	NA	NA
WP_109154146.1\|239750_240131_+	hypothetical protein	NA	NA	NA	NA
WP_136706011.1\|240242_240824_+	hypothetical protein	NA	NA	NA	NA
WP_109154148.1\|241156_244312_-	error-prone DNA polymerase	A0A1C9LWZ5	Streptomyces_phage	9.7e-92	28.2
WP_109154149.1\|244308_245883_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_109154150.1\|245770_246568_-	damage-inducible protein	NA	NA	NA	NA
WP_136706012.1\|247013_247310_+	hypothetical protein	NA	NA	NA	NA
WP_149201208.1\|247422_248667_-\|integrase	tyrosine-type recombinase/integrase	A0A2I7QY74	Vibrio_phage	3.2e-06	22.7
WP_136706014.1\|248686_248974_-	hypothetical protein	NA	NA	NA	NA
WP_109154152.1\|249013_250684_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_109154153.1\|250674_251607_+	TniB family NTP-binding protein	NA	NA	NA	NA
WP_109154154.1\|251610_252942_+	TniQ family protein	NA	NA	NA	NA
WP_109154155.1\|253495_254911_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_109154156.1\|254865_255699_-	FTR1 family protein	NA	NA	NA	NA
WP_109154157.1\|255728_256118_-	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_109154158.1\|256086_256626_-	iron transporter	NA	NA	NA	NA
WP_136706015.1\|256926_257145_+\|transposase	transposase	NA	NA	NA	NA
WP_136706038.1\|257939_258695_+	hypothetical protein	NA	NA	NA	NA
WP_136706016.1\|258729_259131_+	hypothetical protein	NA	NA	NA	NA
WP_136706017.1\|259373_259727_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_109155387.1\|259946_260504_-	DedA family protein	NA	NA	NA	NA
260211:260228	attR	NA	NA	NA	NA
WP_136706018.1\|260586_261195_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_136706019.1\|261279_261951_-	DedA family protein	NA	NA	NA	NA
WP_136706020.1\|261955_263371_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	9.6e-15	26.1
WP_098736711.1\|263354_264035_-	response regulator transcription factor	W8CYM9	Bacillus_phage	4.3e-29	35.0
WP_109154871.1\|264307_265021_-\|transposase	IS6 family transposase	NA	NA	NA	NA
WP_109154872.1\|265019_266522_+	DEAD/DEAH box helicase	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	3.3e-37	27.4
WP_109154873.1\|266599_267508_+	hypothetical protein	NA	NA	NA	NA
WP_109154879.1\|267977_268274_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	2.6e-07	38.2

DBSCAN-SWA_9

277920 : 281838

uncultured_virus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_136706024.1\|277920_278415_+	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	6.5e-11	46.1
WP_109155162.1\|279057_280149_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_109155163.1\|280751_281120_+	hypothetical protein	NA	NA	NA	NA
WP_109155171.1\|281307_281838_+	DUF305 domain-containing protein	A0A0G2Y9T4	Acanthamoeba_polyphaga_mimivirus	7.5e-05	36.9

DBSCAN-SWA_10

286202 : 288602

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109155170.1\|286202_288602_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	5.2e-77	35.0

DBSCAN-SWA_11

298099 : 299964

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109153186.1\|298099_298819_-	response regulator	W8CYM9	Bacillus_phage	1.3e-31	34.5
WP_109153187.1\|299250_299964_-	response regulator	W8CYM9	Bacillus_phage	6.5e-28	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP054618

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

300721 : 360633

Anomala_cuprea_entomopoxvirus(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199872.1\|300721_301489_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.9e-90	66.4
WP_149200001.1\|301648_302689_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_149199871.1\|302870_303803_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_149200000.1\|304048_305374_+	MFS transporter	NA	NA	NA	NA
WP_149199870.1\|305826_307056_+	porin	NA	NA	NA	NA
WP_174757144.1\|307313_308999_+	cache domain-containing protein	NA	NA	NA	NA
WP_149199868.1\|309571_309784_+\|transposase	transposase	NA	NA	NA	NA
WP_174757146.1\|309798_309906_+	hypothetical protein	NA	NA	NA	NA
WP_149199866.1\|309927_310455_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_149199865.1\|311342_313922_-	magnesium-translocating P-type ATPase	M1HX51	Paramecium_bursaria_Chlorella_virus	3.6e-36	26.5
WP_149199864.1\|314163_314658_+	DUF2147 domain-containing protein	NA	NA	NA	NA
WP_149199999.1\|314751_315768_+	fatty acid desaturase	A0A1V0S9E0	Catovirus	5.6e-25	29.6
WP_149199863.1\|316334_317363_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_174757147.1\|317852_318731_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_149199861.1\|318820_319705_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149199860.1\|319899_320910_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_149199859.1\|320943_322557_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149199858.1\|322627_323563_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_149199857.1\|323615_324509_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_149199856.1\|324518_325583_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.0e-09	22.2
WP_149199855.1\|325579_326590_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	8.4e-13	29.9
WP_149199854.1\|326720_328184_+	amidohydrolase family protein	NA	NA	NA	NA
WP_174757149.1\|328161_328326_-	hypothetical protein	NA	NA	NA	NA
WP_149199853.1\|328732_329647_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA
WP_149199852.1\|329743_331033_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_149199851.1\|331066_332728_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_149199998.1\|332746_334270_-	amidohydrolase family protein	NA	NA	NA	NA
WP_149199850.1\|334285_335140_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_149199849.1\|335136_336018_-	ABC transporter permease subunit	Q6GZ02	Mycoplasma_phage	1.7e-06	25.4
WP_149199848.1\|336029_337154_-	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-31	43.0
WP_149199847.1\|337245_338625_-	amidase	NA	NA	NA	NA
WP_174757150.1\|338726_339770_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149199845.1\|339947_340811_+	SIS domain-containing protein	NA	NA	NA	NA
WP_149199844.1\|341039_341750_-\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	4.5e-29	39.6
WP_149199843.1\|342214_342700_-	RES domain-containing protein	NA	NA	NA	NA
WP_149199842.1\|342703_343141_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_149199841.1\|343477_343945_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_149199840.1\|344163_345201_+	cupin domain-containing protein	NA	NA	NA	NA
WP_149199839.1\|345222_345933_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_149199838.1\|345972_347166_+	3-hydroxybenzoate 6-monooxygenase	NA	NA	NA	NA
WP_174757160.1\|347182_347833_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_149199836.1\|347884_349069_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149199835.1\|349173_350031_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_149199834.1\|350042_351038_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_149199833.1\|351037_351790_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	5.8e-11	24.8
WP_149199832.1\|351782_352490_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.6e-10	27.4
WP_149199831.1\|352507_353092_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_149199830.1\|353271_354213_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_149199829.1\|354272_355136_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.1e-27	33.7
WP_149199828.1\|355158_355968_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_149199827.1\|355964_356846_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_149199826.1\|356874_357957_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149199825.1\|358707_360252_+	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_149199824.1\|360318_360633_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP054621

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6839

uncultured_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201306.1\|774_4827_-	tetratricopeptide repeat protein	D6PFH9	uncultured_phage	3.5e-17	27.0
WP_149201305.1\|4823_6839_-	tetratricopeptide repeat protein	D6PFH9	uncultured_phage	1.4e-19	30.9

DBSCAN-SWA_2

26418 : 27863

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201295.1\|26418_27141_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	6.0e-13	28.2
WP_085083614.1\|27137_27863_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-09	24.5

DBSCAN-SWA_3

30994 : 32563

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201292.1\|30994_32563_-	AMP-binding protein	A0A1V0SBX8	Catovirus	2.3e-17	25.8

DBSCAN-SWA_4

39969 : 42420

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201351.1\|39969_42420_+	PAS domain S-box protein	W8CYF6	Bacillus_phage	8.6e-11	26.3

DBSCAN-SWA_5

67535 : 73517

uncultured_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201268.1\|67535_73517_-	tetratricopeptide repeat protein	D6PFH9	uncultured_phage	5.5e-11	24.8

DBSCAN-SWA_6

77279 : 82421

Trichoplusia_ni_ascovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201264.1\|77279_78035_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.1e-08	29.2
WP_149201263.1\|78031_79222_-	AMP-binding protein	NA	NA	NA	NA
WP_085083545.1\|79218_79467_-	acyl carrier protein	NA	NA	NA	NA
WP_149201262.1\|79463_80354_-	alpha/beta fold hydrolase	A0A023W6C9	Mycobacterium_phage	5.3e-11	33.6
WP_149201261.1\|80357_80591_-	acyl carrier protein	NA	NA	NA	NA
WP_149201260.1\|80623_81370_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_149201259.1\|81362_82421_-	pseudaminic acid synthase	A0A1B1IVE2	uncultured_Mediterranean_phage	4.5e-33	34.6

DBSCAN-SWA_7

85922 : 92929

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201255.1\|85922_88214_-	response regulator	A0A1V0SGX0	Hokovirus	8.9e-10	21.5
WP_109152634.1\|88802_89147_-	hypothetical protein	NA	NA	NA	NA
WP_149201254.1\|89167_89569_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_149201253.1\|89847_90609_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_149201252.1\|90640_92929_-	helicase	A0A248SJQ0	Salicola_phage	3.5e-59	33.6

DBSCAN-SWA_8

99320 : 101825

Klebsiella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201248.1\|99320_101825_+	cellulase family glycosylhydrolase	A0A248SL44	Klebsiella_phage	3.1e-72	37.6

DBSCAN-SWA_9

113471 : 118243

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201240.1\|113471_115064_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.3e-31	26.6
WP_149201239.1\|115131_117183_+	asparagine synthase (glutamine-hydrolyzing)	A0A1X9VNR2	Mimivirus	3.1e-30	30.5
WP_149201238.1\|117238_118243_+	NAD(+) synthase	E3SLH5	Synechococcus_phage	4.1e-12	29.6

DBSCAN-SWA_10

126368 : 127406

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199396.1\|126368_127406_-	sulfate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-30	38.4

DBSCAN-SWA_11

150610 : 153895

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199413.1\|150610_152335_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.1e-32	36.4
WP_149199414.1\|152881_153895_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	9.8e-54	36.2

DBSCAN-SWA_12

161477 : 162530

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199421.1\|161477_162530_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.8e-27	33.3

DBSCAN-SWA_13

165668 : 169076

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199424.1\|165668_166334_+	response regulator	W8CYM9	Bacillus_phage	3.8e-30	33.3
WP_149199425.1\|166347_167853_+	sensor histidine kinase N-terminal domain-containing protein	W8CYF6	Bacillus_phage	1.4e-11	25.0
WP_174757460.1\|168157_168304_+	hypothetical protein	NA	NA	NA	NA
WP_149199426.1\|168440_169076_+	bifunctional nicotinamidase/pyrazinamidase	A0A1V0SL12	Klosneuvirus	3.1e-13	27.6

DBSCAN-SWA_14

172198 : 173974

Mimivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199430.1\|172198_173974_+	N-acetylglutaminylglutamine amidotransferase	A0A1X9VNR2	Mimivirus	4.9e-32	25.7

DBSCAN-SWA_15

177815 : 185649

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199434.1\|177815_179474_-	response regulator	A0A1V0SGX0	Hokovirus	3.0e-15	25.1
WP_149199435.1\|179569_180337_-	response regulator	NA	NA	NA	NA
WP_174757463.1\|180333_181410_-	response regulator	NA	NA	NA	NA
WP_149199436.1\|181460_183710_-	response regulator	Q56AR1	Bacillus_thuringiensis_phage	4.6e-11	38.6
WP_149199437.1\|183960_185649_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	5.0e-10	31.1

DBSCAN-SWA_16

189111 : 193529

Feldmannia_irregularis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199441.1\|189111_190044_-	response regulator	Q6XM27	Feldmannia_irregularis_virus	6.8e-09	33.1
WP_149199685.1\|190040_193529_-	response regulator	A0A1V0SGX0	Hokovirus	1.4e-35	29.7

DBSCAN-SWA_17

197510 : 200865

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199446.1\|197510_199637_+	response regulator	A0A1V0SGX0	Hokovirus	2.8e-50	33.6
WP_149199447.1\|199707_200316_+	transcriptional regulator	A0A192Y8M4	Salmonella_phage	2.5e-20	36.9
WP_149199448.1\|200361_200865_-	helix-turn-helix domain-containing protein	K4K6E9	Caulobacter_phage	4.5e-15	60.3

DBSCAN-SWA_18

224975 : 227834

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199470.1\|224975_227834_+	EAL domain-containing protein	I6XM43	Pseudomonas_phage	1.7e-05	42.1

DBSCAN-SWA_19

232662 : 233712

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199474.1\|232662_233712_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	5.8e-25	39.8

DBSCAN-SWA_20

241536 : 249818

Acinetobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199482.1\|241536_242646_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	Q6GZ03	Mycoplasma_phage	1.1e-18	45.2
WP_149199483.1\|242814_243360_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A0P0IVM8	Acinetobacter_phage	6.1e-18	36.6
WP_149199484.1\|243356_244346_+	FAD binding domain-containing protein	NA	NA	NA	NA
WP_149199485.1\|244342_246628_+	molybdopterin-dependent oxidoreductase	A0A0P0I429	Acinetobacter_phage	1.5e-33	24.2
WP_149199486.1\|246768_247593_+	aldo/keto reductase	A0A1V0SDE7	Indivirus	8.6e-32	32.2
WP_149199487.1\|247606_249067_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	4.0e-16	24.7
WP_149199488.1\|249056_249818_-	response regulator	W8CYM9	Bacillus_phage	2.3e-31	34.2

DBSCAN-SWA_21

257231 : 259194

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199491.1\|257231_257549_+	co-chaperone GroES	A0A221S4G8	uncultured_virus	2.6e-21	54.3
WP_149199492.1\|257568_259194_+	chaperonin GroEL	A0A219YK78	uncultured_virus	5.8e-173	61.6

DBSCAN-SWA_22

265061 : 265580

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199499.1\|265061_265580_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.2e-28	44.7

DBSCAN-SWA_23

279182 : 282305

Burkholderia_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199508.1\|279182_280094_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	6.8e-22	30.2
WP_149199509.1\|280279_281575_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_149199510.1\|281603_282305_-	CBS domain-containing protein	A0A2I6B2H4	Macacine_betaherpesvirus	2.6e-05	24.1

DBSCAN-SWA_24

287014 : 287965

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199516.1\|287014_287965_-	zinc-binding dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	2.1e-05	28.4

DBSCAN-SWA_25

294490 : 296404

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199523.1\|294490_296404_-	dipeptide ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-16	29.7

DBSCAN-SWA_26

307145 : 316137

Bacillus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199531.1\|307145_308288_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.6e-21	44.8
WP_174757475.1\|308549_311096_-	EAL domain-containing protein	A0A2D0W9B6	Bordetella_phage	1.0e-06	37.6
WP_149199533.1\|311700_312039_+	hypothetical protein	NA	NA	NA	NA
WP_149199534.1\|312424_312715_+	hypothetical protein	NA	NA	NA	NA
WP_149199535.1\|312905_314258_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0G2Y8M0	Acanthamoeba_polyphaga_mimivirus	6.4e-24	29.4
WP_149199536.1\|314310_316137_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	2.9e-112	40.7

DBSCAN-SWA_27

320026 : 331247

Hepacivirus(25.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199538.1\|320026_321748_-	AMP-binding protein	Q75ZG1	Hepacivirus	2.0e-43	28.1
WP_149199539.1\|321880_323815_-\|protease	ATP-dependent zinc metalloprotease FtsH	E5EQ50	Micromonas_sp._RCC1109_virus	4.1e-93	44.7
WP_149199540.1\|324005_324476_+	DUF3775 domain-containing protein	NA	NA	NA	NA
WP_149199541.1\|324565_325144_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_149199542.1\|325140_327564_-	phosphoenolpyruvate synthase	A0A1V0SGR7	Hokovirus	9.9e-161	34.6
WP_149199543.1\|327650_328244_-	HPF/RaiA family ribosome-associated protein	NA	NA	NA	NA
WP_149199544.1\|328626_329148_-	ATPase	NA	NA	NA	NA
WP_149199545.1\|329340_330228_+	universal stress protein	NA	NA	NA	NA
WP_149199546.1\|330266_331247_+	ribose-phosphate diphosphokinase	A0A1V0SKK7	Klosneuvirus	1.3e-23	28.0

DBSCAN-SWA_28

335161 : 338432

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199552.1\|335161_336538_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	5.4e-63	36.6
WP_149199553.1\|336674_338432_+	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	7.5e-134	49.5

DBSCAN-SWA_29

353077 : 354760

Bodo_saltans_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199557.1\|353077_354760_+	ATP-binding cassette domain-containing protein	A0A2H4UU96	Bodo_saltans_virus	2.2e-13	27.2

DBSCAN-SWA_30

366073 : 367786

Brazilian_cedratvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199564.1\|366073_367786_+	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	6.0e-11	27.0

DBSCAN-SWA_31

390067 : 391654

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199577.1\|390067_391654_+	nickel ABC transporter ATP-binding protein NikE	G9BWD6	Planktothrix_phage	9.8e-16	35.6

DBSCAN-SWA_32

401523 : 403071

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199586.1\|401523_403071_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-11	26.2

DBSCAN-SWA_33

408248 : 413546

Ralstonia_phage(50.0%)

integrase,transposase

attL 405311:405326|attR 429635:429650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
405311:405326	attL	NA	NA	NA	NA
WP_149199589.1\|408248_409544_+\|integrase	tyrosine-type recombinase/integrase	A0A221SAN4	Ralstonia_phage	5.1e-39	33.3
WP_149199590.1\|411205_411445_+	hypothetical protein	NA	NA	NA	NA
WP_149199705.1\|412361_413546_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	2.3e-09	29.3
429635:429650	attR	NA	NA	NA	NA

DBSCAN-SWA_34

433878 : 438116

Acanthocystis_turfacea_Chlorella_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199599.1\|433878_434610_-	nitroreductase family protein	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	7.4e-27	32.4
WP_149199600.1\|434731_435607_-	transcriptional regulator GcvA	Q6JIH3	Burkholderia_virus	1.8e-19	27.4
WP_174757492.1\|435933_436170_+	OB-fold domain-containing protein	NA	NA	NA	NA
WP_149199602.1\|436177_437344_+	thiolase family protein	NA	NA	NA	NA
WP_149199603.1\|437369_438116_+	3-oxoacyl-ACP reductase FabG	A0A0M4JSW6	Mollivirus	2.9e-10	26.5

DBSCAN-SWA_35

448788 : 451417

Cedratvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199614.1\|448788_449772_-	D-2-hydroxyacid dehydrogenase	A0A1M7XU89	Cedratvirus	9.3e-25	28.6
WP_149199615.1\|449821_451417_-	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0S9J5	Catovirus	4.4e-48	27.7

DBSCAN-SWA_36

461922 : 466221

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199625.1\|461922_463698_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.5e-09	28.0
WP_149199626.1\|463684_464410_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	9.6e-11	24.6
WP_149199627.1\|464704_465496_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.4e-09	23.6
WP_098735550.1\|465495_466221_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.5e-13	29.5

DBSCAN-SWA_37

474233 : 475685

Cedratvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199708.1\|474233_475685_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	6.9e-08	26.7

DBSCAN-SWA_38

490468 : 492124

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199644.1\|490468_492124_+	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.9e-30	25.1

DBSCAN-SWA_39

507514 : 509060

Burkholderia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199660.1\|507514_508168_-	chromosome partitioning protein	E5FFJ3	Burkholderia_phage	1.2e-12	32.8
WP_149199661.1\|508164_508410_-	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_149199662.1\|508406_509060_-	AAA family ATPase	A0A2H4JGZ2	uncultured_Caudovirales_phage	1.4e-32	42.2

DBSCAN-SWA_40

518363 : 519044

Bacillus_phage(100.0%)

integrase

attL 514957:514971|attR 520070:520084

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
514957:514971	attL	NA	NA	NA	NA
WP_149199673.1\|518363_519044_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	4.5e-10	27.0
WP_149199673.1\|518363_519044_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	4.5e-10	27.0
520070:520084	attR	NA	NA	NA	NA

DBSCAN-SWA_41

523116 : 524892

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199677.1\|523116_524892_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	3.5e-22	25.6

DBSCAN-SWA_42

529864 : 547379

Acidithiobacillus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_136702604.1\|529864_531391_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.0e-123	47.1
WP_098735029.1\|531400_532153_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.9e-63	48.6
WP_174757503.1\|533176_534643_+	hypothetical protein	NA	NA	NA	NA
WP_149200276.1\|535028_535958_-	DUF2493 domain-containing protein	A0A291L9X7	Bordetella_phage	1.8e-17	40.9
WP_149200251.1\|537297_541665_-	strawberry notch family protein	A0A076FMQ0	Aureococcus_anophage	3.5e-23	27.3
WP_149200250.1\|541756_541960_-	hypothetical protein	NA	NA	NA	NA
WP_149200249.1\|542004_542394_-	hypothetical protein	NA	NA	NA	NA
WP_149200248.1\|542455_544579_-	ParB N-terminal domain-containing protein	G8DH78	Emiliania_huxleyi_virus	4.2e-30	31.7
WP_174757504.1\|545247_546108_+	hypothetical protein	NA	NA	NA	NA
WP_149200246.1\|546434_547379_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.1e-50	38.1

DBSCAN-SWA_43

566905 : 568414

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200236.1\|566905_568414_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A1X9I5H2	Streptococcus_phage	5.1e-14	27.6

DBSCAN-SWA_44

575467 : 576418

Microcystis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200273.1\|575467_576418_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.4e-33	38.0

DBSCAN-SWA_45

580845 : 582302

Anomala_cuprea_entomopoxvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109152351.1\|580845_581541_-	urea ABC transporter ATP-binding subunit UrtE	W6JKT0	Anomala_cuprea_entomopoxvirus	3.7e-12	28.8
WP_149200225.1\|581555_582302_-	urea ABC transporter ATP-binding protein UrtD	A0A2H4PQG7	Staphylococcus_phage	5.2e-12	25.5

DBSCAN-SWA_46

590748 : 593604

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200216.1\|590748_593604_-	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	9.6e-22	24.1

DBSCAN-SWA_47

598954 : 607101

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200210.1\|598954_600538_+	AAA family ATPase	K7PHD1	Enterobacteria_phage	3.8e-84	38.0
WP_149200209.1\|600541_601387_+	hypothetical protein	K7PK19	Enterobacteria_phage	2.3e-24	27.7
WP_149200208.1\|601729_604861_-	response regulator	A0A1V0SGX0	Hokovirus	1.2e-22	28.0
WP_149200207.1\|605118_607101_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	2.5e-13	26.5

DBSCAN-SWA_48

611297 : 614217

Gordonia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200203.1\|611297_612152_-	ParB/RepB/Spo0J family partition protein	A0A1C9EHY8	Gordonia_phage	1.1e-10	31.8
WP_109075141.1\|612141_613164_-	AAA family ATPase	A0A2I6B2X3	Macacine_betaherpesvirus	3.6e-19	34.8
WP_109153386.1\|613269_614217_-	replication initiator protein A	A0A0K1Y6J9	Rhodobacter_phage	4.4e-24	27.7

DBSCAN-SWA_49

626260 : 631656

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200198.1\|626260_626806_-	GNAT family N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	7.2e-27	44.2
WP_149200197.1\|626811_628053_-	MFS transporter	NA	NA	NA	NA
WP_149200196.1\|628128_629028_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149200272.1\|629193_631656_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	9.2e-13	19.4

DBSCAN-SWA_50

640098 : 645426

Pike_perch_iridovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200189.1\|640098_641706_+	methylcrotonoyl-CoA carboxylase	A0A1B2ITV7	Pike_perch_iridovirus	3.9e-20	68.1
WP_149200188.1\|641717_642500_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_149200187.1\|642505_644524_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_149200186.1\|644526_645426_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	4.8e-44	37.4

DBSCAN-SWA_51

650433 : 653412

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200182.1\|650433_653412_+	MCP four helix bundle domain-containing protein	A0A1B0V854	Salmonella_phage	1.0e-37	53.2

DBSCAN-SWA_52

657915 : 662712

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200271.1\|657915_659682_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	1.6e-43	31.2
WP_149200270.1\|659941_660754_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	8.8e-13	23.1
WP_149200178.1\|660753_662712_+	AMP-binding protein	Q75ZG1	Hepacivirus	3.7e-17	25.9

DBSCAN-SWA_53

666454 : 667240

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200269.1\|666454_667240_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.5e-12	29.4

DBSCAN-SWA_54

672588 : 677667

Leptospira_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200170.1\|672588_675867_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	4.6e-36	21.2
WP_149200169.1\|675909_676263_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_149200168.1\|676361_676598_-	hypothetical protein	NA	NA	NA	NA
WP_149200167.1\|676761_677667_+	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	5.1e-70	50.9

DBSCAN-SWA_55

688285 : 694618

Organic_Lake_phycodnavirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200160.1\|688285_689923_-	ATP-binding cassette domain-containing protein	F2Y2R6	Organic_Lake_phycodnavirus	5.9e-08	23.8
WP_149200266.1\|690351_690879_+	redoxin family protein	M1I839	Pelagibacter_phage	2.4e-51	56.6
WP_149200159.1\|691278_692343_+	plasmid partitioning protein	NA	NA	NA	NA
WP_149200158.1\|692410_693688_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.8e-145	62.1
WP_149200157.1\|693835_694618_-	alpha/beta fold hydrolase	G9VYU4	Mycobacterium_phage	3.0e-10	36.5

DBSCAN-SWA_56

715342 : 718009

Vibrio_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200140.1\|715342_717058_+	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	1.0e-74	37.3
WP_149200139.1\|717079_718009_-	histone deacetylase family protein	A0A2K9KZC4	Tupanvirus	1.0e-41	33.1

DBSCAN-SWA_57

729791 : 738095

Ostreococcus_tauri_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200126.1\|729791_731561_+	glyoxylate carboligase	E4WLQ6	Ostreococcus_tauri_virus	1.7e-45	27.9
WP_149200125.1\|731723_732644_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149200124.1\|732757_733501_+	SDR family NAD(P)-dependent oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	5.6e-06	25.7
WP_149200123.1\|733381_734470_-	cupin domain-containing protein	NA	NA	NA	NA
WP_149200122.1\|734471_735305_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_108547871.1\|735599_736289_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_149200264.1\|736352_738095_+	oxalyl-CoA decarboxylase	E4WLQ6	Ostreococcus_tauri_virus	1.6e-27	26.4

DBSCAN-SWA_58

746560 : 753783

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200115.1\|746560_747397_-	N-acetylmuramoyl-L-alanine amidase	U5PTK7	Bacillus_virus	2.6e-15	30.5
WP_167393191.1\|747666_747834_+	hypothetical protein	NA	NA	NA	NA
WP_109074646.1\|748099_748486_-	hypothetical protein	NA	NA	NA	NA
WP_149200113.1\|748708_749575_+	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	5.2e-11	38.9
WP_149200112.1\|749599_750403_-	response regulator	NA	NA	NA	NA
WP_149200111.1\|751289_751793_+	hypothetical protein	NA	NA	NA	NA
WP_149200110.1\|752148_753783_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	8.1e-58	32.9

DBSCAN-SWA_59

759870 : 761885

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200106.1\|759870_760860_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	5.9e-11	26.2
WP_174757555.1\|760925_761885_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.7e-21	33.2

DBSCAN-SWA_60

766020 : 766911

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200099.1\|766020_766911_-	S49 family peptidase	A0A1C9LW82	Vibrio_phage	1.1e-13	33.5

DBSCAN-SWA_61

770170 : 777882

Caulobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200096.1\|770170_770971_-	metallophosphoesterase	A0A1V0EF12	Caulobacter_phage	6.0e-30	41.6
WP_149200095.1\|771070_772513_-	tetratricopeptide repeat protein	A0A0K0KVL2	Prochlorococcus_phage	2.2e-22	29.4
WP_149200094.1\|772637_773900_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149200093.1\|773986_774631_-	TRIC cation channel family protein	NA	NA	NA	NA
WP_149200092.1\|774705_775266_-	hypothetical protein	NA	NA	NA	NA
WP_149200261.1\|775479_777882_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	6.9e-122	38.5

DBSCAN-SWA_62

784585 : 785677

Faustovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200086.1\|784585_785677_+	histidinol-phosphate transaminase	A0A1X7QHI1	Faustovirus	2.2e-14	25.4

DBSCAN-SWA_63

789083 : 794315

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200082.1\|789083_790652_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	5.7e-16	31.1
WP_149200258.1\|790669_791665_-	BMP family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149200081.1\|791971_792151_-	DUF2256 domain-containing protein	NA	NA	NA	NA
WP_174757518.1\|792147_793032_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_149200080.1\|793220_794315_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	6.1e-33	37.1

DBSCAN-SWA_64

804921 : 811530

Erysipelothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200070.1\|804921_806289_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	1.6e-43	28.3
WP_149200069.1\|806380_806875_-	flagellar basal body-associated FliL family protein	NA	NA	NA	NA
WP_149200255.1\|807340_808489_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_149200068.1\|808543_809863_-	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	4.8e-69	38.6
WP_149200067.1\|809866_810700_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_149200066.1\|810696_811530_-	purine-nucleoside phosphorylase	Q5YBA4	Grouper_iridovirus	9.9e-52	42.1

DBSCAN-SWA_65

817888 : 820302

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200058.1\|817888_819604_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	5.6e-09	24.3
WP_149200057.1\|819600_820302_+	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	4.6e-10	28.8

DBSCAN-SWA_66

835536 : 894219

uncultured_Mediterranean_phage(29.41%)

tRNA,transposase,integrase,protease

attL 841282:841301|attR 899046:899065

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149200041.1\|835536_836163_-\|protease	ATP-dependent Clp protease proteolytic subunit	G3M9Z8	Bacillus_virus	1.1e-26	37.6
WP_149200040.1\|836554_837421_+	glycosyltransferase	NA	NA	NA	NA
WP_149200039.1\|837515_837863_+	hypothetical protein	NA	NA	NA	NA
WP_149200038.1\|837966_839121_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_149200037.1\|839125_842239_+	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.0e-77	24.7
841282:841301	attL	NA	NA	NA	NA
WP_149200036.1\|842255_842636_+	response regulator	Q56AR1	Bacillus_thuringiensis_phage	1.8e-05	32.5
WP_167393189.1\|842757_842916_-	hypothetical protein	NA	NA	NA	NA
WP_149200254.1\|843212_843593_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_149200035.1\|843719_844253_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	8.6e-25	51.4
WP_149200034.1\|844455_844914_+	hypothetical protein	NA	NA	NA	NA
WP_149200033.1\|845057_845777_+	SRPBCC family protein	NA	NA	NA	NA
WP_149200032.1\|845907_846288_+	c-type cytochrome	NA	NA	NA	NA
WP_149200031.1\|846405_849063_-	aminopeptidase N	NA	NA	NA	NA
WP_149200030.1\|849201_849819_-	hypothetical protein	NA	NA	NA	NA
WP_149200029.1\|849844_850285_-	hypothetical protein	NA	NA	NA	NA
WP_149200028.1\|850436_850703_-	hypothetical protein	NA	NA	NA	NA
WP_149200027.1\|850711_851071_-	hypothetical protein	NA	NA	NA	NA
WP_149200026.1\|851067_851685_-	hypothetical protein	NA	NA	NA	NA
WP_149200025.1\|851928_852498_+	hypothetical protein	NA	NA	NA	NA
WP_149200024.1\|852739_853312_-	hypothetical protein	NA	NA	NA	NA
WP_149200023.1\|853431_854205_-	exodeoxyribonuclease III	NA	NA	NA	NA
WP_149200022.1\|854267_854624_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.5e-22	45.7
WP_149200021.1\|854816_856028_+	deoxyguanosinetriphosphate triphosphohydrolase	NA	NA	NA	NA
WP_149200020.1\|856071_857832_+\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
WP_174757519.1\|857828_858902_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_149200019.1\|858873_859968_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	3.2e-18	38.1
WP_149200018.1\|859984_860662_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_149200017.1\|860672_861503_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.1e-38	34.3
WP_149200016.1\|861495_862113_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.6e-41	46.0
WP_149200015.1\|862298_862553_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	3.6e-05	48.0
WP_149200014.1\|862628_863153_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_149200013.1\|863168_863960_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	2.9e-53	47.1
WP_149200012.1\|864090_866775_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	8.3e-76	38.0
WP_149200011.1\|866849_867182_+	DHCW motif cupin fold protein	NA	NA	NA	NA
WP_109153035.1\|867210_868053_+	MoxR family ATPase	NA	NA	NA	NA
WP_149200010.1\|868190_871952_-	AAA family ATPase	M4SNF6	Cyanophage	2.6e-06	27.6
WP_149200009.1\|871951_873196_-	exonuclease SbcCD subunit D C-terminal domain-containing protein	A0A0K2D090	Bacillus_phage	9.4e-06	25.4
WP_149201858.1\|878912_880583_-	recombinase family protein	R9TP69	Rhizobium_phage	4.5e-72	34.7
WP_149201857.1\|880589_881675_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_149201859.1\|882208_883030_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	2.7e-09	28.4
WP_149201856.1\|883192_883486_-	hypothetical protein	NA	NA	NA	NA
WP_149201855.1\|883499_883742_-	DUF4167 domain-containing protein	NA	NA	NA	NA
WP_174757521.1\|883985_884246_-\|transposase	transposase	NA	NA	NA	NA
WP_149201853.1\|884599_886555_+	AAA family ATPase	NA	NA	NA	NA
WP_149201852.1\|886563_888282_+	UvrD-helicase domain-containing protein	S5MMD7	Bacillus_phage	3.1e-15	24.5
WP_149201851.1\|888394_890617_-	ATP-dependent RecD-like DNA helicase	A0A0H3UZA5	Geobacillus_virus	2.2e-61	28.8
WP_149201850.1\|891072_891567_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_149201849.1\|892264_892618_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149201848.1\|892769_893030_+	hypothetical protein	NA	NA	NA	NA
WP_174757523.1\|893226_894219_-\|transposase	IS481 family transposase	NA	NA	NA	NA
899046:899065	attR	NA	NA	NA	NA

DBSCAN-SWA_67

906413 : 913635

Mycobacterium_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201496.1\|906413_906974_-	hypothetical protein	G1D3R9	Mycobacterium_virus	3.4e-32	41.4
WP_149201497.1\|907327_907807_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174757528.1\|908098_910408_+	AAA family ATPase	Q9JMN6	Wolbachia_phage	2.2e-101	40.1
WP_174757529.1\|910719_913635_-	DEAD/DEAH box helicase	A0A0K0N6W5	Gordonia_phage	6.4e-21	26.1

DBSCAN-SWA_68

951116 : 952031

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201602.1\|951116_952031_-	transketolase	A0A2K9L6P9	Tupanvirus	4.9e-28	31.7

DBSCAN-SWA_69

955103 : 956204

Mycoplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174757534.1\|955103_956204_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.1e-21	33.7

DBSCAN-SWA_70

959624 : 962116

Trichoplusia_ni_ascovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201524.1\|959624_960410_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	4.2e-12	28.4
WP_149201525.1\|960441_960723_+	N-acetyltransferase	NA	NA	NA	NA
WP_149201526.1\|960821_961508_-	cupin domain-containing protein	NA	NA	NA	NA
WP_149201527.1\|961504_962116_-	sigma-70 family RNA polymerase sigma factor	A0A0F6TH34	Sinorhizobium_phage	4.6e-06	27.2

DBSCAN-SWA_71

965995 : 967090

Planktothrix_phage(100.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201606.1\|965995_967090_+\|holin	betaine/proline/choline family ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-28	39.7

DBSCAN-SWA_72

974278 : 977089

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201534.1\|974278_975715_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.3e-11	28.3
WP_149201535.1\|976096_977089_+	pyridoxal-phosphate dependent enzyme	C3U2M1	Lactococcus_phage	4.7e-08	27.4

DBSCAN-SWA_73

981008 : 982523

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201541.1\|981008_982523_-	5'-nucleotidase C-terminal domain-containing protein	S4VPC4	Pandoravirus	1.0e-54	30.7

DBSCAN-SWA_74

992305 : 992806

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201551.1\|992305_992806_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	A0A0P0IVM8	Acinetobacter_phage	3.9e-19	39.6

DBSCAN-SWA_75

998508 : 999663

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201556.1\|998508_999663_+	acyltransferase family protein	A0A2H4JA46	uncultured_Caudovirales_phage	2.5e-05	24.4

DBSCAN-SWA_76

1015158 : 1015995

Halovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174757540.1\|1015158_1015995_+	CbbQ/NirQ/NorQ/GpvN family protein	R4TG24	Halovirus	4.4e-15	32.6

DBSCAN-SWA_77

1020421 : 1026138

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174757558.1\|1020421_1022518_-	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	4.9e-31	26.3
WP_149201574.1\|1022532_1024242_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_063828251.1\|1024255_1024345_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_149201575.1\|1024749_1025136_+	response regulator	W8CYM9	Bacillus_phage	1.7e-06	31.9
WP_149201576.1\|1025211_1026138_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	2.4e-46	36.1

DBSCAN-SWA_78

1043980 : 1045429

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201590.1\|1043980_1045429_-	type IV pili methyl-accepting chemotaxis transducer N-terminal domain-containing protein	W8CYF6	Bacillus_phage	1.6e-17	27.5

DBSCAN-SWA_79

1048800 : 1054407

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201595.1\|1048800_1052919_-	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	1.3e-64	30.8
WP_149201612.1\|1053660_1054407_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.2e-18	32.9

DBSCAN-SWA_80

1065400 : 1068759

Acanthamoeba_polyphaga_mimivirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201359.1\|1065400_1066480_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	1.1e-18	55.6
WP_149201348.1\|1066482_1067175_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
WP_149201347.1\|1067179_1067998_-	ABC transporter permease	NA	NA	NA	NA
WP_149201346.1\|1067994_1068759_-	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	9.8e-14	24.1

DBSCAN-SWA_81

1082243 : 1086482

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201335.1\|1082243_1082972_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-15	27.2
WP_149201334.1\|1082982_1083798_-	family 16 glycosylhydrolase	NA	NA	NA	NA
WP_149201333.1\|1083945_1085112_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_149201332.1\|1085288_1086482_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.4e-20	32.5

DBSCAN-SWA_82

1092337 : 1095590

Rhodobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_109086333.1\|1092337_1092658_-	heavy metal-binding domain-containing protein	M4STD1	Rhodobacter_phage	2.8e-15	42.9
WP_085083693.1\|1092819_1093455_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_149201327.1\|1093743_1094718_+	YqaJ viral recombinase family protein	A0A0F7L4Y1	uncultured_marine_virus	4.0e-12	25.6
WP_149201356.1\|1094714_1095590_+	hypothetical protein	B0VK85	Azospirillum_phage	1.1e-32	38.9

DBSCAN-SWA_83

1103010 : 1105230

Feldmannia_species_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201319.1\|1103010_1105230_+	GAF domain-containing protein	B5LWN8	Feldmannia_species_virus	3.3e-30	24.3

DBSCAN-SWA_84

1110256 : 1115976

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149201354.1\|1110256_1110979_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	4.4e-16	34.1
WP_149201355.1\|1110968_1111709_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_149201313.1\|1111751_1112747_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149201312.1\|1112870_1113575_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-10	25.6
WP_149201311.1\|1113617_1114355_-	TSUP family transporter	NA	NA	NA	NA
WP_149201310.1\|1114359_1115976_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	5.0e-76	37.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP054620

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054620_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054620_1

39405-39493

Orphan

Consensus_repeat	Method
TCGGGATCGTTCTTGAAGTTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054620_1

>merge|NZ_CP054620|1|39405-39493|CRISPRCasFinder
TCGGGATCGTTCTTGAAGTTGCCACCCGACGCCTGGCCGCCCTTGTGGCCAGCTTCGGCTGCGCGCTCCGGATCGTTCTTGAAGTTGCC

>NZ_CP054620|1|1|39405-39493|CRISPRCasFinder
TCGGGATCGTTCTTGAAGTTGCC	ACCCGACGCCTGGCCGCCCTTGTGGCCAGCTTCGGCTGCGCGC
TCCGGATCGTTCTTGAAGTTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054620.1\|WP_149200528.1\|41248_42445_-\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
NZ_CP054620.1\|WP_149200536.1\|32230_33406_-\|NO-inducible-flavohemoprotein	unknown	unknown	gnl\|CDD\|237337
NZ_CP054620.1\|WP_149200535.1\|33539_35132_+\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP054620.1\|WP_149200531.1\|37290_39138_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|379902
NZ_CP054620.1\|WP_149200537.1\|28460_29387_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|183082
NZ_CP054620.1\|WP_149200533.1\|35391_36675_-\|TRAP-transporter-large-permease-subunit	unknown	unknown	gnl\|CDD\|224509
NZ_CP054620.1\|WP_149200520.1\|52362_52563_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054620.1\|WP_174757439.1\|42490_43768_-\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_CP054620.1\|WP_149200523.1\|46511_48026_-\|mannitol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223324
NZ_CP054620.1\|WP_149200521.1\|49308_52080_+\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP054620.1\|WP_149200522.1\|48209_48968_-\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224715
NZ_CP054620.1\|WP_149200524.1\|45443_46472_-\|Zn-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176222
NZ_CP054620.1\|WP_149200698.1\|29565_31722_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP054620.1\|WP_149200532.1\|36671_37211_-\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|377284
NZ_CP054620.1\|WP_149200538.1\|27807_28461_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|223871
NZ_CP054620.1\|WP_149200539.1\|24273_27771_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP054620.1\|WP_149200534.1\|35128_35395_+\|DUF1488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377825
NZ_CP054620.1\|WP_149200525.1\|44346_45372_-\|DctP-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270321
NZ_CP054620.1\|WP_149200529.1\|39756_41232_+\|sigma-54-interacting-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226350
NZ_CP054620.1\|WP_149200526.1\|43764_44268_-\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|225632

Protein	Function_ID	Function_description	E-value
NZ_CP054620.1\|WP_149200528.1\|41248_42445_-\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
NZ_CP054620.1\|WP_149200536.1\|32230_33406_-\|NO-inducible-flavohemoprotein	gnl\|CDD\|237337	PRK13289, PRK13289, NO-inducible flavohemoprotein.	0
NZ_CP054620.1\|WP_149200535.1\|33539_35132_+\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP054620.1\|WP_149200531.1\|37290_39138_-\|PAS-domain-containing-protein	gnl\|CDD\|379902	pfam16927, HisKA_7TM, N-terminal 7TM region of histidine kinase. HisKA_7TM is an N-terminal region consisting of seven transmembrane domains found in Archaea and some bacteria. It is always found associated with histidine kinase.	2.23462e-54
NZ_CP054620.1\|WP_149200537.1\|28460_29387_-\|SIS-domain-containing-protein	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	2.81211e-76
NZ_CP054620.1\|WP_149200533.1\|35391_36675_-\|TRAP-transporter-large-permease-subunit	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	1.28938e-89
NZ_CP054620.1\|WP_174757439.1\|42490_43768_-\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	9.34345e-128
NZ_CP054620.1\|WP_149200523.1\|46511_48026_-\|mannitol-dehydrogenase-family-protein	gnl\|CDD\|223324	COG0246, MtlD, Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism].	0
NZ_CP054620.1\|WP_149200521.1\|49308_52080_+\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP054620.1\|WP_149200522.1\|48209_48968_-\|FCD-domain-containing-protein	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	8.46438e-54
NZ_CP054620.1\|WP_149200524.1\|45443_46472_-\|Zn-dependent-oxidoreductase	gnl\|CDD\|176222	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	3.33001e-159
NZ_CP054620.1\|WP_149200698.1\|29565_31722_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.26155e-36
NZ_CP054620.1\|WP_149200532.1\|36671_37211_-\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	1.99916e-25
NZ_CP054620.1\|WP_149200538.1\|27807_28461_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|223871	COG0800, Eda, 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism].	6.5782e-61
NZ_CP054620.1\|WP_149200539.1\|24273_27771_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.13501e-98
NZ_CP054620.1\|WP_149200534.1\|35128_35395_+\|DUF1488-domain-containing-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	0.000643863
NZ_CP054620.1\|WP_149200525.1\|44346_45372_-\|DctP-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270321	cd13603, PBP2_TRAP_Siap_TeaA_like, Substrate-binding domain of a sialic acid binding Tripartite ATP-independent Periplasmic transport system (SiaP) and related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic-binding component of TRAP transport systems such as SiaP (a sialic acid binding virulence factor), TeaA (an ectoine binding protein), and an uncharacterized TM0322 from hyperthermophilic bacterium Thermotoga maritima. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process and a smaller membrane of unknown function. The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.61595e-121
NZ_CP054620.1\|WP_149200529.1\|39756_41232_+\|sigma-54-interacting-transcriptional-regulator	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	1.15711e-149
NZ_CP054620.1\|WP_149200526.1\|43764_44268_-\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.05016e-16

>NZ_CP054620.1|WP_149200531.1|37290_39138_-|PAS-domain-containing-protein
MTLPSALLLAAVVATLWIAARSWTLPAFPGRTDFVLMQLSAAWWSTAVAIESIVPDPADKLLWAEMAWLGIVCTPSLWAFFLWSYTRGELPERWRLALVTIGLATWAVALTNDAHHLFYTAVRPVNAEPGAALVYSHGLLFYVVTIYIYAFMVMSIVVTASGIHRATPAYRTHYLGFLVVMAVPWAANAGYVFGNLTLFDLDPTAFSFLMMDGIFYWLITRRRLFDLLPVARDALLDAVPDPVLVLDGDGTVVEANPAAQALAGDHAAIGRRLADLPGLSALSTMVAAKPATVSGPLTLDCGGSPRCFEVTWVPLTAGGGGREVGCLLMLRDVTHRHRAEMRLEDTVRRLDLARLEAEERLVAEQEAKRALNGFLSMAAHEFKTPLAIIDGAAQLLLMDAEVKAPGMLPRLEKIRRAVRRQINILETCLADDRLSDPAFALRRDRLELPVLLRAAASAQGDAAPGRRIELELDGCPARMTGDGPMLELCVHNLLNNALKYSPAGTPVRLHAWSERGPDGQSHLAQSHLALSVADQGIGIPDSERERVFDRFFRASNTGTAAGSGVGLNMVRRIAALHGGTVTVDSRLGGGSVFTLRIPLCEEAPCEDRMAGMPAD
>NZ_CP054620.1|WP_149200532.1|36671_37211_-|TRAP-transporter-small-permease-subunit
MSDHDPTVVRPVPKPRVPLGIEEVLVAITMGVVALITFANVVVRYLTDVSFAFTEEYSIALMVILTFLGASAAVVKDRHIRITFITDKLSPGNRRRAEQFAMACVALMYGLLVVYGTWTTWDDYRFEVTSPALGLPQWIYTIWLPVLSLVVLARTIGRMIRIHRGTEPLETGHIPEGEP
>NZ_CP054620.1|WP_149200533.1|35391_36675_-|TRAP-transporter-large-permease-subunit
MITTLLFGSFLVMMLAGVPIAAALGLAGTAAIAFAHLGVISVPTSVYTGIAKYPLLTIPMFVLAGTIFDRSGVAQKLVRFATAIVGQGKGALAIIAVVVAMMMGGISGSGPAIAAAVCGVMAPSMIRAGYPRPYIASVIAAAAATDILIPPSVALIIYSVLVPAAPTTSMFAAGIIPGTLAGLALIVPVFWLARKHNLGAKLSHEPRPPFWRSLWDASLGLFAKVIILGGLRLGIFTPTEAAVIAVAYGLLLGMVVYRTIRFRDLYSMLVEAAEISAIILTVIALASVFGWALSTLSVIDPIADAIIHSGLGEYGVMALLVVMLTIIGTFLDGISIFIILLPLLIPIATAYKWDLTWFGVILTLMIAVGQFTPPMAVNLMVACRMTGCSMESTLRWVMWPLVTMLLVVVAVIIWPDLALWMPRQMGF
>NZ_CP054620.1|WP_149200534.1|35128_35395_+|DUF1488-domain-containing-protein
MSAEGLSWRAEIDALVFRPTGHGGWCAVHRLAFRALLGRREPTPEDCLAYAAAHRGAFEAAAAGKISGRGYGAAASLHLTSRDIARFL
>NZ_CP054620.1|WP_149200535.1|33539_35132_+|nitric-oxide-reductase-transcriptional-regulator-NorR
MDNDAVNSTTSLPLEQVGALLLALDDPARLWPLLLDLMSRHLPCDACALLRHDGRSGEGLLVPLATRGLSPDTLGRRFELGEHPRLRAIAEADGGPLRFPAGCELPDPYDGLIPDLSQRLHVHDCVGAPLNVDGRPWGVLTLDALNEGRFDGWDGAIAAWAQLTADLATAVERRAAQDAAMAADGGTALRILDDPPQGLDFAPVGSSPAMAALLAEVDSVAASDLVVLVLGETGVGKELVARRLHSRSPRAAGPLVHVNCAALPDALVESELFGHVRGAFSGAVADRRGKFELADGGTLFLDEVGELPLAAQAKMLRALQNGEIQRVGSDRHITVDVRVIAATNRDLAAEVREGRFRADVYHRLSVYPLRVPPLRDRGTDILRLAGLFLERNRARLGLRNLRLSAAAERRMLAYPWPGNVRELEHAIGRGAIRARVARPPDGGVLTLTPADLGLEVGEGSAVATTVQRPRLPEPPDLPELPLRDAVEDLERRMILEHLARHDGNWAQAARSLGLDRSNLFRLARRLGLRE
>NZ_CP054620.1|WP_149200536.1|32230_33406_-|NO-inducible-flavohemoprotein
MLTPAQIAVIKATAPVVAANANKITGTFYPLMFERYPEVRAVFNQSHQRSSAQPEALANAIIAYASNIDRLEVLGPAVEAIVQKHVSLNITPDQYKIVGTCLMEAIGKVLGDAVTAEVADAWGAAYWQLADLLIAAEETEYARKAALTGGWRGARRFRIVEKTPESAVITSFRLAPVDGGRVMDFHPGQYLGLRLTVDGDTVHRNYSLSASPNGRDYRISVKREPQGLVSGFLHDRVQVGDEIDVYPPAGEFVLREGAGPLLLITGGVGQTPALPLAEQALAAGRKVIYVHAALNGSVHAFRQQIDELGAMHEALKPVYCYAEPQPGDKPHMVGLLDQERLASLLPKEPGVAAYVVGPKPFMAAVVKALTALGLPESSIVHEFFGPREALA
>NZ_CP054620.1|WP_149200698.1|29565_31722_-|HAMP-domain-containing-protein
MMLQGTPAKGGAWYSGLRAKLMIAIGVVLSGTLVAAAVALIGYANVRTTIDAIVGEAVPAMTEGMAVAQQAERLVALAPALTSAADASAREAVSARIAAAKEEFNARLSRLRATGSAGDQLAAIEEASQGLLNNLVQLDQAAAERVALAAERTAMLPKVLAAEAEIQKFAAPWTSVLNNDEEQARSTLAEPDTDAAAMREAAATLSKITTQKKPLMAVTTEAANIRNMLMEAATTDDDQRLAIIETRVGVSLAGLSNGAQGLPERLAAVASKQADLLNGYSIGENSLVTIRQKELAIQGYFIQLLESNHALTTTLSKGIATLVDGQKHSIAEASGATTRMLDNSRLMQIAVAVASILVSILVVWLYIGRIVIRRMMDLKTGMGRIAAGDLDAEIKLSGHDEIAEMGAALLVFRDTAREVETTRAAAEAERQRAAGERRQTMLSLADQFENGVKTVVETVSAAATQMHQTAAGMVATADDTSRQAGSAAEAAETASVNVDGAASAAHELSQSISEIARQVTESATIAAKAANEADRTDSTMRELNEAASRIGAVLDLISDIAGQTNLLALNATIEAARAGEAGKGFAVVAQEVKQLASQTAKATDQIAGQIGAMQQATGEAVNAIRSIGLTIGRLNDIAASIAAAVEEQGAATSEIARNVQQAAGGTAQASQNIGQVRTAAGQTGQSAQEVLSVAQEVSTQTGRLQQQIDRFLSQVRSA
>NZ_CP054620.1|WP_149200537.1|28460_29387_-|SIS-domain-containing-protein
MLDTIASSLDSLRRAEAAVARTVLADPEAAVRDSLAQLAGKAGVSEPSVLRFCRSAGFGGFQEFKISLAQHLAASAVREEVGDRPTPLVRDLTPGDSVASAAEKVLNRSIDALVRLRGRLDSIALEKAAGVLARARRVQIVGVGASGAVALDAHHKLFRLLPQVTASTDAHLQAMAAATLGPGDALLAISKTGTSDEIFDVAAIARDGGATVIAITASATPLAERADIRLTVDVDEDTAVHTPMASRLAQLALIDVLTVAVGLQAPPGLDRRLARIKAVLAGHHRVPERPASPSNPASPIIQKKSEES
>NZ_CP054620.1|WP_149200538.1|27807_28461_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MSTTQSPVEILDQLVAYGVVPVIRNSSADLARTAVTWLREAGYGTFEITMTTPGAVGLIEELSAEGGALIGAGTVLTPAAVADVVKAGAKYVVSPCVVPKVAAACRDHGVACLMGALTPTEVHAAISAGADAIKIFPASTVGPAHIKALKSVFPGVRFVPTGGIDATTVASYVAAGVACVGAGGKLVDETLVKNGDREGILAAGRQLMEAYRAAKGA
>NZ_CP054620.1|WP_149200539.1|24273_27771_+|response-regulator
MADGSGSGSGGSEPGTAGMVRIGVGARLFGALAFNGLVAFLIGLGAYIAFDGLHAGITKVTSEQFPAVVASAKLERQHQRIMRTLEQLALSEENFGRETIKQGLADQLDGYDRLLAELDSADGRQAQRIAGLKLQRDEILRLRDAIDRGVAARITARRALADRTRDVRRMADALAEPALREVEDAGVQRWLAMAERLLFLIASVHQAENSFALARLADSAAAQLAALDGSVPAGGVSERLARLAEGMRSVVEGDRSVFRQRQAELQASEMLNGLVDRANQVSLVNTGLNTGIFVEQTKAAEESRQQIIEVSTTYTRLFFASVGVVVLGMVLSVLYVRRKVLARLWAVSEAIRDRTGGGRAEVPVTGADEIGQLARALRFYIQETEDKSAALRRNEQWLRTVLEAAPVPLVISGRADGQIRFVNRRAADLFEVDEAGDLLGRPAASVWYVPQVRDEFVRDVFSSGLALDVETELVTQSGRRLWGLLSGIAFEFQGEEVLLSSVVDITRRREAEELLRRTQAFLDAVIDNVPSVLYVLDGDSGRVLLWNRAAEDCFGTRRADIENRTLAEVLGPETGRALAGGDPGSMRSLGVEELVLPRNGENAVFALQRHPFEWSGDGRCRIICVANDITASRRAREELRQAKERAERADAAKTEFLATVSHEMRTPLNGILGLCRLLLTGQLHAGERRYAMSIMRCGHGLLDQVNDILDLRKIEDGKLDLDPAPCALLPVLEEVVATVEGLANEKGIDLDLDIAPEVPELVVVDRQRLRQILVNLVGNAVKFTERGGVDLRVDIEPAPERSGSEEMLRLAVRDTGIGVPADRRAAIFEKLEQADPTIARRFGGSGLGLAIVRHLLDAMQGRIRVDSAEGLGSVFTVTIPLHRVIEPAPPARPGRLLPISRVRSLALLLVEDDAINREVALGLLSDAGHRITVAETGEKALELATRRRFDAILLDIRLPDIDGPEVARRIRALEDADRAAVPIVAVTANVFAADRARYIAAGIDAVIEKPIFPERLMHLLSNAVAARSDDDEETAVGTLPVDPPARPPVVEDDVNEEILGRYIRSLGPARFATIRGLLLESAQDGLPRLTAADSSDDEIEDIAHRLAGAASHFGLTAFVGLMRAVEDGMREGRRVEAQELAATAESAFSRGLAAMDAVRGVLEGV
>NZ_CP054620.1|WP_149200529.1|39756_41232_+|sigma-54-interacting-transcriptional-regulator
MNDRERFSEVRQGDAALLRSRAIPSLFEALETQSEGTVAVDRHARVVWINEKYARMLGISDPAEAIGREVEEIIPHSQMRQILATGQPILLDLMLFGTQRLVVSRFPLTDDAGTVIGAVGFVLYDSLHRLKPLLAELSRLEAELAATKRRLDEGRQPRYTLQSYVGDSPVCLEVKRKARLAARTDAPILLLGETGTGKELIAQAIHGLSARSGRSFVGVNVAAIPETLLEAEFFGAVPGAYTGLDRRGREGRFKTADGGTLFLDEIGDMPLGLQAKLLRALQEQEIEPLGSDRPVKVDVRVIAATNVDLERRIRDGRFRSDLYYRLNVLPIRLPALAEMGGGLEAIAESILQEIAARSGLPLRGLTPEAVEALGRHRWPGNVRELRNVLERTCLLTDNRRLTAADLAEALPDLGDVQTAEAARPAPVQALVHAAPQPVPGYDEAFDEFERGLLGRALAASGGRATEAARALGISRAAFYKKLARLGMRAGG
>NZ_CP054620.1|WP_149200528.1|41248_42445_-|mannonate-dehydratase
MEQSWRWFGPEDAIKLNHIRQAGATGVVTALHHIPYGVVWSVEEIQKRKAMIESDKELGLSWTVTESLPVHEAIKIGEGDLTELFDNYRQSMRNLAACGVTTICYNFMPVLDWTRTELAAALPGGGTSLRFNAHEHAAFDVYMLERPGAEEDHAPEVLAKAKEWFDRSSESDRAKLLTNIMAGLPGAYDRYDIPGLRKMIARFNGMSADGLRETLARFLREVIPTAEEVGIRMAIHPDDPPRPLFGLPRVVSTEDDLAHLINAVKSPNNGLTFCTGSLGAGQTNNVPAMAKRFVEDIHFVHLRNVAKEPDGSFEEADHLGGDVDMVSVVTTLLEEQKRRQDAGNDNWRLPFRPDHGHELLDDVGKPTHPGYPMIGRLRGLAEIRGVMTAVAAVKQLPM
>NZ_CP054620.1|WP_174757439.1|42490_43768_-|TRAP-transporter-large-permease
MMVTALFVTFAVLLILGAPVGIALGGASAVYLVGSDIDLAVVPQFMYAGMDSFVLLCIPGFVLAGNLMNGGGITDQIVLFSNRLVGHIRGGLGLANVTGSMVFAGISGTAVAETASIGAVMIPAMRKSGYDAPFAAAVTAAASTVGPIIPPSVPMIIVGTLTGLSVGKMFMAGAVPGVLLGIGMMLTVWILARARNYPKEPWQGFGALLRASRGAFWALLMTAIILFGIVGGYFTPTEASIVAALYAFVIGLFVYKGFKLRQLPAILLESAIGAGGLILLVGLANVFGWILTSEQIPQAIAASMLALTTNKYLIILLINILLLIVGTFMETIAALIILFPPLLAVATQVGIDPIHFATFAVLNLMIGLTTPPVGVCLFVAANIAKISLGAITKAIWPFLLCNILILFLVSYIPALSLWLPSLLFR
>NZ_CP054620.1|WP_149200526.1|43764_44268_-|TRAP-transporter-small-permease-subunit
MRKAFSAAVAAVSALCRWGTLAAIGVLIVVVTIQVLGRVPGFPSPPWTEEVARFALVHLVAFSCGLALLRGELVNVDMFILLLPKPLQWAVARTVDLAILVFAVAIIPGAWDYVVGSVGERARSINVPMIWVYVVTLIIPVSLAFFSIARLAGLGRDSAPPSHGETV
>NZ_CP054620.1|WP_149200525.1|44346_45372_-|DctP-family-TRAP-transporter-solute-binding-subunit
MNSKTPISRRTLAKTIGLGAGIAAGATLLGGIAAPAIVRAQAKTTLKLGHLANEDNVWHKASLIFAEEVAKRTNGAVEVKVFPNEQLGKETDLIKGIQLGTIDFTITGESLQNWAPAAALLAVPYAIRDLDHLDKVVSGEPGKKIADAIEQKTQLVPLTYFARGPRNLTSKRPIKSPDELNGLKMRVPNVPLFVSFWQGLGAKPTPMAFSEVFTGLQNDTIEAQENPLALIKSASFYEVQKYVNLTEHVISWIYLVGGSKKLNKLPAEQRAAIMEAAKAAQAAERKLFIEDETKLAADLKAKGMEFITVDKAAFAEKGRPTVVAALSPEIKPIYEEILAVK
>NZ_CP054620.1|WP_149200524.1|45443_46472_-|Zn-dependent-oxidoreductase
MVALTVEKPHVLALRPENAPASGSVKAGEVLVRVQRAGICGSDLHIYHGSNPFAVYPRVIGHEFAGTVEAVGDGVGNVAVGDHVVVDPVVSCGRCYACRAGRTNVCANLEVFGVHRDGGFRNHVVVPAANAIKVRSDLPISLAALAEPLSIAANVLSRTGIGPEDTVLVYGAGTVGLTVVQVAKLHGARCIVADLDDKRLERAKEFGADVVLNSARVSVPDAVRDENDGLGPTVVIDGAGVPALLEEACRLASPAARIGLLGFSPGPCNISQQEIVKKELTLVGSRLNRRLLPQVIDWLESGKLNPAAMITQVFPIADAASAFALIENDPSSTIKVQLDFEG
>NZ_CP054620.1|WP_149200523.1|46511_48026_-|mannitol-dehydrogenase-family-protein
MQTPASSSSPSGTPSRRLGDSVLSTLPAAVARPGYDRRDLEIGIVHLGVGAFQRAHQAAYTDALLETQFGAWGIAGVSLRSPDTRDALEPQDGLYTVAVRDAEGERLRVIGCLLELLVAHEDPEAVLERMCRPSVRIVTLTVTEKGYCHDPATGALNEDHPDIRHDLDNPAKPRTAIGFLIEALARRRATGLPPFTVLSCDNLPSNGDTVARILRRFAELRGADFGAWVAETVACPNSIVDRIVPATTEADRTRVSQSLGVQDAWPVVTEPFTQWVVEDRFPAGRPAWETVGVELVADVHPYETMKLRLLNGSHSTIAYLGYLAGYETVSDTMADPAFATLVRNLMDRETGPTLHMPPGADMEQYKDALIARFRNPALRHRTWQIAMDGTQKLPQRLLNPIRDRLAAGETIDRLVLAVAAWMRYVAGTDETGKPIDVRDPMAAKLAEIAASTAGNPDRLAEALFGLTAVFGEDLPRDPRFTGPVTAALKRLFADGARAVVAATA
>NZ_CP054620.1|WP_149200522.1|48209_48968_-|FCD-domain-containing-protein
MLSKIDVDSSEPIARRVYRVLRQAIVTMQFRPGQALSEQEIADQLGVSRQPVREAFIKLSESGLLTIRPQRGTFVVKISVKQVLDARFVREAVETAVVRKACETITPAGIAELRDNLKAQWDIADEAVPVRFLELDEAFHRTIAIGAECDYAWRIVEETKAQMDRVRYLSVPYATPIRRLISQHQAVVEAIVARDPVKAEAAMGLHLREILTSLPELESKFPDLFTLDDAAPPPPQKATSRNAVRARVAGAR
>NZ_CP054620.1|WP_149200521.1|49308_52080_+|phosphoenolpyruvate-carboxylase
MSAILLQESSETKDQPLREDIRLLGRILGDTVRSQEGEAVFDIVERIRQTSIRFHREEDQGARKELEAILNSLSPPQTARVVRAYSFFSHLANIAEDQHHIRRTRAHALAGSAPREGTMAHALDEATKAGVTTQQLKEFFDGALVSPVLTAHPTEVQRKSILTVQMAVAKLLAERDHGPMTPEEEETNLESLQRAVLTLWQTAILRATKLAVTDEVANGLTFYDYTFLREMPRFYAQLEDHLRKTDPSWATTELPSFLRMGSWIGGDRDGNPFVTAPVLRQAMRMQSTRALQFYLDELHTLGSELSLSTRVIDVSEPLRQLAERSPDPSPHRKMEPYRRAISGLYARVAATLRTLDGLEAPRHAVGEAPPYLSPAEFGADLDIIDRSLTVNGSATLAKGRLRHLRRAVDLFGFHLASIDLRQNSDVHERTVAELLSFADADVDYKALSEDERIELLVRELETNRPLASRYADYSEETNSELDILRTAADARARFGADAVVNCVISKTDGVSDILEVAVLLKEAGLLRPKEKALDLNIAPLFETIGDLRNCAATMDRLLSIPTYRRFLESRGNLQEVMLGYSDSNKDGGFLTSGWELYKAEIALVEVFAKHGVRLRLFHGRGGSVGRGGGPSYQAILAQPAGAVQGAIRITEQGEVIAGKYSNPEVGRRNLETLAAATLEATLLHPESAAPCTDLFLQTMEELSEHAFKAYRGLVYDTEGFEKYFWESTVIGEIANLNIGSRPASRKKSTSIEDLRAIPWVFSWAQCRLMLPGWYGFGSAVKAYLAQHPDGMERLRAMHRDWGFFSTLLSNMDMVLSKSNIAIASRYAGLVSDPALRDAIFSRIRAEWQDSIDALLAITEQSALLENNPLLARSIRNRFPYLDPLNHVQVELLKRHRTSDSGEQIARGIHLTINGIAAGLRNSG
>NZ_CP054620.1|WP_149200520.1|52362_52563_+|hypothetical-protein
MTTQSQQQQMAQQQQARATTGTQGGTPAGTQGGTADTYEEFCGGACGAGAGAAVIWRPVTVEPRRR

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Crispr_ID: NZ_CP054620_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054620_2

248665-248862

Orphan

Consensus_repeat	Method
NTGAACTTTGGTGACGCC	CRT
GGCGTCACCAAAGTTCA	PILER-CR

4 spacers

The CRISPR arrays of NZ_CP054620_2

>merge|NZ_CP054620|2|248665-248862|CRT,PILER-CR
CTGAACCTTGGTGACGCCCCGACGGCGATATGGGCCGCCCGGATTTGAACTTTGGTGACGCCCCCGGCCGAACCGACTCGGCAAGACTCCTGAACTTTGGTGACGCCGGGCAGTTCAGCGGCGGTTCTGGGGTTTGAACTTTGGTGACGCCACCGGCCCCGAATCGACTCGACCGGCCGTTTGAACTTTGGTGACGCC

>NZ_CP054620|2|1|248665-248862|CRT
CTGAACCTTGGTGACGCC	CCGACGGCGATATGGGCCGCCCGGAT
TTGAACTTTGGTGACGCC	CCCGGCCGAACCGACTCGGCAAGACTC
CTGAACTTTGGTGACGCC	GGGCAGTTCAGCGGCGGTTCTGGGGT
TTGAACTTTGGTGACGCC	ACCGGCCCCGAATCGACTCGACCGGCCGT
TTGAACTTTGGTGACGCC

>NZ_CP054620|2|1|248666-248815|PILER-CR
TGAACCTTGGTGACGCC	CCGACGGCGATATGGGCCGCCCGGATT
TGAACTTTGGTGACGCC	CCCGGCCGAACCGACTCGGCAAGACTCC
TGAACTTTGGTGACGCC	GGGCAGTTCAGCGGCGGTTCTGGGGTT
TGAACTTTGGTGACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054620.1\|WP_149201454.1\|254132_254588_+\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|133385
NZ_CP054620.1\|WP_149201456.1\|255937_256675_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226480
NZ_CP054620.1\|WP_149201485.1\|246475_247501_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP054620.1\|WP_174757430.1\|254726_255890_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP054620.1\|WP_149201453.1\|252778_253969_-\|HPP-family-protein	unknown	unknown	gnl\|CDD\|225979
NZ_CP054620.1\|WP_149201443.1\|234857_235655_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP054620.1\|WP_149201452.1\|251417_252425_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176233
NZ_CP054620.1\|WP_109074722.1\|249435_250365_+\|pirin	unknown	unknown	gnl\|CDD\|309782
NZ_CP054620.1\|WP_174757446.1\|256671_257724_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380512
NZ_CP054620.1\|WP_149201451.1\|250454_251303_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP054620.1\|WP_149201458.1\|257823_258762_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240633
NZ_CP054620.1\|WP_149201447.1\|243129_244029_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176163
NZ_CP054620.1\|WP_109074740.1\|258792_259536_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP054620.1\|WP_149201448.1\|244132_245566_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143456
NZ_CP054620.1\|WP_149201444.1\|235789_237310_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|181011
NZ_CP054620.1\|WP_149201446.1\|240649_241786_+\|tryptophan-7-halogenase	unknown	unknown	gnl\|CDD\|223717
NZ_CP054620.1\|WP_149201449.1\|245562_246486_-\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP054620.1\|WP_149201484.1\|241876_243052_+\|transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP054620.1\|WP_149201450.1\|247576_248587_-\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP054620.1\|WP_149201445.1\|237650_240653_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|269831

Protein	Function_ID	Function_description	E-value
NZ_CP054620.1\|WP_149201454.1\|254132_254588_+\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|133385	cd01110, HTH_SoxR, Helix-Turn-Helix DNA binding domain of the SoxR transcription regulator. Helix-turn-helix (HTH) transcriptional regulator SoxR. The global regulator, SoxR, up-regulates gene expression of another transcription activator, SoxS, which directly stimulates the oxidative stress regulon genes in E. coli. The soxRS response renders the bacterial cell resistant to superoxide-generating agents, macrophage-generated nitric oxide, organic solvents, and antibiotics. The SoxR proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the unusually long spacer between the -35 and -10 promoter elements. They also harbor a regulatory C-terminal domain containing an iron-sulfur center.	7.00971e-86
NZ_CP054620.1\|WP_149201456.1\|255937_256675_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|226480	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism].	4.98379e-30
NZ_CP054620.1\|WP_149201485.1\|246475_247501_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	9.9686e-66
NZ_CP054620.1\|WP_174757430.1\|254726_255890_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	6.70331e-132
NZ_CP054620.1\|WP_149201453.1\|252778_253969_-\|HPP-family-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	3.61644e-122
NZ_CP054620.1\|WP_149201443.1\|234857_235655_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	6.13682e-63
NZ_CP054620.1\|WP_149201452.1\|251417_252425_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.13998e-180
NZ_CP054620.1\|WP_109074722.1\|249435_250365_+\|pirin	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	3.444e-47
NZ_CP054620.1\|WP_174757446.1\|256671_257724_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380512	cd06289, PBP1_MalI-like, ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	3.17919e-124
NZ_CP054620.1\|WP_149201451.1\|250454_251303_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.61436e-40
NZ_CP054620.1\|WP_149201458.1\|257823_258762_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	1.44728e-173
NZ_CP054620.1\|WP_149201447.1\|243129_244029_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176163	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 5. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.97943e-99
NZ_CP054620.1\|WP_109074740.1\|258792_259536_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.09054e-161
NZ_CP054620.1\|WP_149201448.1\|244132_245566_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143456	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.	0
NZ_CP054620.1\|WP_149201444.1\|235789_237310_-\|AMP-binding-protein	gnl\|CDD\|181011	PRK07514, PRK07514, malonyl-CoA synthase; Validated.	0
NZ_CP054620.1\|WP_149201446.1\|240649_241786_+\|tryptophan-7-halogenase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	5.04492e-28
NZ_CP054620.1\|WP_149201449.1\|245562_246486_-\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.14711e-33
NZ_CP054620.1\|WP_149201484.1\|241876_243052_+\|transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	2.32182e-16
NZ_CP054620.1\|WP_149201450.1\|247576_248587_-\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	7.58664e-45
NZ_CP054620.1\|WP_149201445.1\|237650_240653_+\|hypothetical-protein	gnl\|CDD\|269831	cd14731, LodA_like_1, Uncharacterized proteins similar to L-lysine epsilon-oxidase from Marinomonas mediterranea. L-lysine epsilon-oxidase is responsible for oxidative deamination of L-lysine, producing L-2-aminoadipate-6-semialdehyde. Hydrogen peroxide is a side-product of this enzymatic reaction, which requires the cofactor CTQ (cysteine tryptophylquinone). CTQ most likely forms a Schiff base with the free amino acid substrate. The protein is known for its broad-spectrum antibacterial activity; the latter is most likely caused by hydrogen peroxide synthesis. Although members of this related family share features of the active site, their functions are not known. Homologs of LodA have been detected in various gram-negative bacteria, and they appear to be associated with the formation of biofilms.	0

>NZ_CP054620.1|WP_149201450.1|247576_248587_-|cation-diffusion-facilitator-family-transporter
MARNAMTASAGGAEEGESGKVVFAAIASNLAITVTKFVAAVVTGSSSMLSEAVHSLVDTGNEALMLVGLKRSKKAPDERHPFGYARELYFWTFVVALVIFAGGAVVSIYEGVEKILHPQPVESPWINFVVLGVALVMEGISWMVALRAFNASRGEAGVFETVHASKDPTVFIVLFEDSAALVGLLIAAACLSADLALDQPVWDGIGSVLIGLVLAITAAFLAYETKSLLIGESARPDLVRGVRALLMEDAAVDRVNEVLTIHLGPQVVIVTVSLDVRDEVSGGEVERALARAERRVKERFPEIRRVFTEVRAADGNRDHDPTEGGRVVVATPRGLH
>NZ_CP054620.1|WP_149201485.1|246475_247501_-|AAA-family-ATPase
MLSTRGGGGGDDMRQLRERRGENQTQFAEWLNAQLGRSYTKARISRWESGAERIPQQLVDFLTRHKADERPRSATYLAVANQKGGVGKTATAVNLAYALTEGGARVLLIDCDSQSNATVHVGIGNAAIVALEQQRKTLYYVLRSEEPLTSVIMPTAERGLDLVPAGLSLADADVELAADSTGGLILREKLDEVRHVYDFVVMDCAPNLGLVTANALSAAELVVVPVQTEALALLGVKRLVDTIGRIRRRVNPSLRIAGIIPTMYNDRLTQDRATLQELMESYAGQVPVFAPIPRATVYGKAAAAGMITLAGDPKAPGAETFREVARQIRAYAQNREMPHVA
>NZ_CP054620.1|WP_149201449.1|245562_246486_-|ParB/RepB/Spo0J-family-partition-protein
MSRKFERKTRELLGTAAEPAGAMAGGLTVGSDRLFGTSAGFPHVVELDLARVHRNPDQPRRHFDEAELRSLASSIERHGLQNPILVRPLPQGEYLLIGGERRVRAHEMLGRKTVFAILTSGDPDEIGLIDNVQRVDLNAVEYAAALARLIDKHGYTHDELAAVVGRDRTDVTKLLAIMGLPAEMREEYATRFAHVSRSVMIEIAAAPAELHARLWERAKEGASVKAVRQAKREHANGGAAEDASPPEPPQEPDAKEAMRTLQASVKRILRDVAVVRERCRYLDPDNRDRLMRLRAEIDAILEGEAGA
>NZ_CP054620.1|WP_149201448.1|244132_245566_+|aldehyde-dehydrogenase-family-protein
MHTIDTIYIDGRFVTPHGTELFDLHDPATGAVTGRVRLADEEDVRAAIAAAKRALPAFSRTGKAERIAMLHRLADAVAARRDDLLDAVIGEYGAPASRAAFMVDHPVNAFRETAALLADYPFLRRMGTAEVSMEPLGVAGLITPWNSNAGFICGKLATAIAAGCTTVIKPSEMSARQTQIVTEALHAAGLAPGLFNIVTGRGDRVGATISSHPDVAKISFTGFTATGKAILRSAADTLKRVTLELGGKSPTIILDDADLSQAIPLAINAAFMNSGQACIAGTRLLAPRSRLAEIEARARSAVEAVRAGDPRDPATIVGPMVSRTQWERVQRYIRIGVEEGAVLLAGGEGRPDGQPEFSGGWFVRPTLFTAVRNDMTIAREEIFGPVLSILPYEDEEEAIAIANDTVYGLQAYVLSGDTARARRVADRIVAGRVLINSLTHDPKAPFGGFKQSGIGREYGSFGLDAFLEPKALLGEGV
>NZ_CP054620.1|WP_149201447.1|243129_244029_-|LysR-family-transcriptional-regulator
MVLTGLAELEAVQAVARHRGFRAAAAELGMSRSALSHAIAALEERLGVRLFHRTTRSVALTQAGEQFVADTAPALRDIRAAFDRLGDHRAVPTGTLRINSSAGAARMIMKPVILEYLRRYPAMTVDIVTEGKLVDIVLEGFDAGVRLAEQVPQDMIAIPLGPELRFAVVGTPEYFAGRSLPVTPADLAAHRCIRSRLPSGALYRWEFERHGETVAIDGSGPLILDDPDLMLDAVRAGMGVGYLAEWHVAEDIAAGRLLRVLDAWTQPFPGLCLYYSGRRHLPPGLRALVDLVREIGGGR
>NZ_CP054620.1|WP_149201484.1|241876_243052_+|transposase
MPWEETCTMDERLKFVSACLSGEQPMSWLCERFGISRKTGYKWLDRYRTSGPAGLVDQSRARIEPSQMAAEVREAILALRVEKPHWGPLKLRAKLCEREPGTMWPAASSIGALLRRTGLSQPRRGRRRTPPYQQPLAHAQAANDVWCADYKGWVRSRDGQRCDPLTVSDAYSRFLLAADLVPRLDSASARPIFERLFGEYGLPAAIRSDNGVPFASTGVAGLSELSVWWLKLGIRPERITPGKPQQNGRHERMHRTLHAEAMASPSADAREQQQRLDAFRAEFNHERPHEALGQRQPARFYSASNRHYDGCLAEPVYSQEQACRRVRTNGDIKWAGGFVFIGEVLIGEPVAVSETDQGYMAVYYFDLLLGYIDKGARTIRSPERWHATAQG
>NZ_CP054620.1|WP_149201446.1|240649_241786_+|tryptophan-7-halogenase
MTTPVEADAVVVGAGPAGTAFALNLAPLHRVLVLDRRAGPAVRIGESLAPAARRLLADMGLWDAFLAEGHSPCHGGRSVWGGPLPVEADSLRDLDGPGWHLDRGRFDGWLRRVAASRGAALLVPAQPLSVDRAGQGWLLEVETAGRRIPVHARLLVDAGGRGSPLAKRFGARRAVSDRLVCGWVHGIDAPGRQSGLTWIEAEPDGWWYSAPLPEGRRVVAFHTDADLPAAADARDTASLLRRLSTCSVLSDSLRACGFEADGQGEGRGGFCAAHSSSLSPASGEGWLAVGDAALGFDPLSSQGIFNALYTGLAAAEAADRHLSGDPTALSNYAAGLTPIREAYRAHLRAWYGLERRWQDRPFWSRRLSNPLSPLGRGT
>NZ_CP054620.1|WP_149201445.1|237650_240653_+|hypothetical-protein
MTAEDPNKSPPCFDCATNATQRLDEMFIAMGQMKRIALGQKPAERAVFRKLHGAAHGRLVMHPDRPEALRKVGVFAKDQLPAWVRFSSDTGPTSPDLGSTLGIGLKVWGVDGVNALGETGDVADFIMQNFPIFFVDNAEEMCEFTYAGTVLKDYPGYLAKHPKTNGILDAMSAQVNGSVLTTQYWAILPFAFGPDHYAKYSLVPETPPPGHPAVNVPTDDKNYLATDLANRLLEDEYRFTFMVQVVPKSAGYPLDKATEEWPTDQYPYQPVATLVLPKQDVCARGQGDYGQELAFNIWRTPVEQAPQGSIAAVRKVVYNHGADVRHQANGQPLQQPTQPRTQAPPLPKDDCIVKAVIYPPIGVARIGNAPEGYVVGPEVPNPKPLMAGDDPARNPYRDAEGRLLPQAARFRIYGVNAMGRIVRELTAADSGADITWKVHLANKKSAWYGFQLALDIPEAASADPTTLRNPTVADRQALVLDAGEEKIHAGHGKQSRKLVAGKFMHQGEPVYLGRMWCEEGDHRLLVTGGRGFSSSYNGTKAITFGNNEGWHDDTSDGPVDAVVKLNGMELPVTPAWIVVAPPNYGPQRKSVRTMWDLMRDVAIQAGTLPKPARPSFTHDIYPVFERMTGLQWVNAGFAAGFGWNSANDFTKPEWIARLSDRSLANQETRRVLKNSFRHDAVDSWSPTPWPWVYGDAMNIPPAQTPRQYTSLTQTQLEFLDQWVAGDFDDDWGKVPVYTDFDQVPLEEQGDVLTRAAMDFCLADAFHPGCEMTWPVRAATMYMEPFRFAHAPKGWVEPGLGAILSSDTVTIPNGPLYGQLPGGITRWMAVPWQTDTGSCRSGYDPTYDPNVPTFWPARVPNEVLTRENYRIVMDAAQPAQVRLAAFANRAAWVAPLGTTSYTDQINNMIHHFDHLGVVEVNPGPTDPEGTRLFPPLIEVEDQHIPIPDVDDTVDTKAVRAAHRTMSGKAPAPSGGGAGLRATQPVDLSRIDKVRRFPRGLR
>NZ_CP054620.1|WP_149201444.1|235789_237310_-|AMP-binding-protein
MSDNFFDIAAACFPADADSSFIELESGRRYSYRDLMEISGRYARLLAELGVAKGDRVAVQVEKSAEAVFLYLACLRAGAAYLPLNTAYTKAEVGYFLGDAEPKVFVCPPGNEAALADTAKGAGVGNLLTLGTGGDGSLADRAAGLDPEFDTVACAADDLAAILYTSGTTGRSKGAMMSHRNLSSNAATLHRIWGFRPDDVLLHALPIFHTHGLFVATNCVLMNGTGMLFLGKFDPDAVFRLLPRATVMMGVPTFYTRLLADPRLTPEAAAHMRLFISGSAPLLADTHREFRERTGHAILERYGMTETGMLTSNPLDGDRIPGTVGFPLPEVSVRVADEKTGEPVAEGGIGVLEVKGPNVFSGYWRMPEKTAQEIRPGGWFITGDVGRIDERGYVHIIGRAKDLVISGGFNVYPKEVETVIDGIDGVVESAVIGIPHPDFGEAVMAVVLRRPGAAVDEAAVVGACREQLANFKVPKAVAFVDELPRNAMGKVQKNLLREANKGRFGA
>NZ_CP054620.1|WP_149201443.1|234857_235655_-|polysaccharide-deacetylase-family-protein
MMTLFRRAVLPLAAALLALPVSAMAGQRSYAATHGAAPFVTEHLIPGSDLDLDQVDRTLPQARVVALTIDDGPDANDPRILDILRAHGAKATFFYIGAKIPAHHDIARLVAASGNEVGSHTETHPMTTDLPPVQREWNLAQAEKALASVGVTATWFRPPFGDVDEALAALARRHGMATVLWTADSQDWKDSGPDVIRHRVTERLVPGAVVLMHSTKASTVAALPAILEEGKRRGLRFVTMSEWDAAMRQSVTPEMALLHPAPRRR
>NZ_CP054620.1|WP_109074722.1|249435_250365_+|pirin
MGSIHRLIETHGRDGALALVSDEERPLIDIAAAVQAAENGKLGITYAGFCQTALPHRQLPDDQHWERPGHKVKLVIQPGVIEDRNGVTRRIGVPYGSRARMILLYLQTRAIQTGNPEVELGGSMHDWLKRMDIPICGKAYRDVEDQAARLSACHLTFFTDADGGRRQSKESIVADAIQLRRPDDRQGTLFTETVRLSDSFFKALREHPVPVAEEALKAISGKSMALDVYIWLAYRLHSLDKPTPITWAALHGQFGAGYALVRQFKTKFIPNLKYAMAAYPDARVEEAAEGLILYPSRPPINERVMARIA
>NZ_CP054620.1|WP_149201451.1|250454_251303_-|LysR-family-transcriptional-regulator
MEWSDLRIFLAIAREGTLGAAARRIGQTQPTMGRRLRALEEAVGHTLFQRTSDGFVLTDEGAAVLRHAERMEEESLALERELAGKGGRLEGSLRLSSSDWFGLHMLTPVLHEFTRRHTGVTVELLTEARLLSLSRREADLVFRIRPFDEPEVVQRKLTRIDYALYGIVGSPPPKVGDGTGCALVTMDTAFGGMPDVEWLRRMLPNARIAFRSNNRDVQAAMAAFGVGLAVLPRPIGDALDRLQVIDLGEPPPGRDVWVGYHQDLRRLARLRALLDLVIERFS
>NZ_CP054620.1|WP_149201452.1|251417_252425_+|zinc-binding-dehydrogenase
MSQDPNNTMRALVLDAYDAPFRLTEVARPVAGPGQVLVRIAASGVNPLDTKIRAGAAAHAKHPLPAILGIDLAGEVVAVGPGVTAFRPGDQVYGMTGGVGGRQGSLAEYAAVQADLLAHKPANLTMREAAALPLITITAWEGLVDRANVQPGQTVLVQGGAGGVGHVAVQIARAFGAAVWATESAGKLALVERLGATAIDYRAETVEAYVARHTGGHGFDLVYDTAGGPVLDASFQAVRRFGHVVSCLGWGTHALAPLSFRAATYSGVFTLLPMLTGEGMANHGEILRRAAALVEAGKLLPRLDPRRFPLEQADEAHTAVTDGSAGGKIVVDIAF
>NZ_CP054620.1|WP_149201453.1|252778_253969_-|HPP-family-protein
MTRGKLAALRNRLAGLGELVFRPILPGATLRDRMIACCGALLGIAATGLLCRNMLTFMSSAPVLVAPMGASAVLLFAVPASPLAQPWSIIGGNTLSAIVGVLVASVIPDPMLAGAAAVALAIATMSLTRCLHPPGGAAALTAVLGGPAVTEMGIKFAFFPVAVNSILLLTAGLMFHRLSGHRYPHKAVNTHRTNDPPAQLRPGLTQGDVDVALRTLAETLDVSRDDLGALLVNAELHALERLHADITCREIMSRDVVTVTPDTHPQVARARLLEHGFRTLPVVDGQNMVVGIVGHEQLSHGDAVHHGSRVAAVMAPAATELPDTPVFRLLGRLSDGRTHDVVIVDQNRRVLGMITQTDLLVVLARTALARAVQTGVDGLNDALPRGYLRDVAAGRA
>NZ_CP054620.1|WP_149201454.1|254132_254588_+|redox-sensitive-transcriptional-activator-SoxR
MLSPEEYDKELTVGEVARRSGVAVSTIHFYEAQGLIRSWRNPGNQRRFSRDVLRRVAVIKVAQRLGISLASIADALNALPQDRSPTTADWRRMSERWRTELDDRIAKLTKLRDNLDGCIGCGCLSIRECPLRNPWDELGDGGAGPRLLDPA
>NZ_CP054620.1|WP_174757430.1|254726_255890_+|D-alanyl-D-alanine-carboxypeptidase
MIVANPPRSAAPLRRLAACLSLAAAFLASAPAAALTPPDTAARQAYLVDLTSGEVLLDKDGETRMAPSSMTKMMTAYLTYDALVHGRTTLDTGFPVSQTAWKMGGSRMFLKLGSQVRVEDLLRGLLVDSGNDAAVALAEGLAGSESAFAALMNAKARELGMTDTHFMNASGWPDPGHYTTARDLATLATHLIRDFPQFYHYESERTFTWNGIRQGNRNPLLYHPVSVDGIKTGHTEVGGYGLTASGERNGRRLVLVVNGLTSAQARNDEPTRLLDWAWNSFKLYPLLHKGELVEQAPVWMGAEDSVPVTVADDVTVTMAPADRNSLHVVATLAEPLPSPVHRGDVVGKLRIDYDGAVRRTVDLVAGADVPASSGLTALGQRLGHLLP
>NZ_CP054620.1|WP_149201456.1|255937_256675_-|fumarylacetoacetate-hydrolase-family-protein
MTDTVEALIAARETRQWLTGLDNRPATEAEAYEIQDAVARRLGPVTAWKVGAATPDAEPFRAPINAATVFEGTDHLPANLFQVIGVEAEIAYRFARDLPVREQPYSREEVLDAVASVHPAWEIVDTRFAGFGSQDRLSHMADQFNHGALIVGPAIADWRSLDPLKETVTLEVDGETKVDVVGGNSAGDPVRLLVWMANVGTRSFGGLHAGEVVTTGSCTGTVFVEPGSRSVARYGTMGTITLKVD
>NZ_CP054620.1|WP_174757446.1|256671_257724_-|LacI-family-DNA-binding-transcriptional-regulator
MTEVAGHAGVSRSTVSLVLRGSPLVAAETRERVQAAMVALGYIYNRGAANLRAARTHTVGLLVCELNNPFYAELTAGVDDVLDTEGFVAFIANTAEQPERQDRFLQRMREHNVDGVILCPAAGTQPELLDRLDRWRLPCVQALRFVSDQERDYAGVDYQAGMETVTEHLISLGHRRIAFVGGTLDHSAYAARHAGFTAAMRRHGLADDLVLRCPLTRRSGAEMADHLLNRPQAQTAAPTAALCYNDVVALGLMLGLEARGLRAGRDLAVTGFDDVPEAALSRPALTTVATSARQIGQEAARLLLRRIADPQGPPERIILPSRLVVRQSCGAPSDSLGGAPSPSLHHRDLS
>NZ_CP054620.1|WP_149201458.1|257823_258762_-|2-hydroxyacid-dehydrogenase
MKPEILLVEPMMPAIEQALDAAYTVHRLSAAPDRDRLIAEVADRVRAVVTGGGTGVKKAVVEALPNVGIIAINGVGTDAVDLEHARGRGVRVTNTPDVLTDDVADLAIGLMIAASRRMMVGDRFVRAGQWPKGKLPLARKVSGKRLGVLGLGRIGEAIARRAEAFGMTIAYTNRKPRDGVSYRFVASPVELARESDILIVAASAGADARNMVGRAVLDALGPDGLLVNVARGSVVDEPELLAALTEGRIGGAALDVFADEPNVPEGFYGLDNVVLQPHQASATVETRMAMGQLVLDNLEAFFAGRPLPTAVV
>NZ_CP054620.1|WP_109074740.1|258792_259536_-|amino-acid-ABC-transporter-ATP-binding-protein
MSADVVIRMEGVQKWYDHFQVLKDIDLEVHRGERIVICGPSGSGKSTLIRCINQLERHQKGRITVNGVELGPHHRQLDTVRREVGMVFQSFNLFPHLTVLENCMLAPMKVRGTTKAEAKATAIRYLERVRIPEQADKYPGQLSGGQQQRVAIARSLCMNPKVMLFDEPTSALDPEMVKEVLDTMIGLAEDGMTMLCVTHEMGFAKSVAHRVIFMDRGEIVEQNTPEAFFTDPKSERTRSFLGQILAH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054620_1	1.1\|39428\|43\|NZ_CP054620\|CRISPRCasFinder	39428-39470	43	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	39428-39470	0	1.0
NZ_CP054620_2	2.1\|248683\|26\|NZ_CP054620\|CRT	248683-248708	26	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	248683-248708	0	1.0
NZ_CP054620_2	2.2\|248727\|27\|NZ_CP054620\|CRT	248727-248753	27	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	248727-248753	0	1.0
NZ_CP054620_2	2.3\|248772\|26\|NZ_CP054620\|CRT	248772-248797	26	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	248772-248797	0	1.0
NZ_CP054620_2	2.4\|248816\|29\|NZ_CP054620\|CRT	248816-248844	29	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	248816-248844	0	1.0
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	248683-248709	0	1.0
NZ_CP054620_2	2.6\|248727\|28\|NZ_CP054620\|PILER-CR	248727-248754	28	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	248727-248754	0	1.0
NZ_CP054620_2	2.7\|248772\|27\|NZ_CP054620\|PILER-CR	248772-248798	27	NZ_CP054620	Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence	248772-248798	0	1.0
NZ_CP054620_2	2.1\|248683\|26\|NZ_CP054620\|CRT	248683-248708	26	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	3536-3561	4	0.846
NZ_CP054620_2	2.1\|248683\|26\|NZ_CP054620\|CRT	248683-248708	26	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	693311-693336	4	0.846
NZ_CP054620_2	2.7\|248772\|27\|NZ_CP054620\|PILER-CR	248772-248798	27	MN657113	Psychrobacter sp. strain ANT_P52 plasmid pA52P5, complete sequence	7837-7863	4	0.852
NZ_CP054620_2	2.1\|248683\|26\|NZ_CP054620\|CRT	248683-248708	26	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	72316-72341	5	0.808
NZ_CP054620_2	2.4\|248816\|29\|NZ_CP054620\|CRT	248816-248844	29	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	382278-382306	5	0.828
NZ_CP054620_2	2.4\|248816\|29\|NZ_CP054620\|CRT	248816-248844	29	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	436866-436894	5	0.828
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	3535-3561	5	0.815
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	NZ_CP032324	Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence	693310-693336	5	0.815
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	NZ_CP014767	Pontibacter akesuensis strain AKS 1T plasmid Paks1, complete sequence	112629-112655	5	0.815
NZ_CP054620_2	2.1\|248683\|26\|NZ_CP054620\|CRT	248683-248708	26	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1511821-1511846	6	0.769
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	NZ_CP041349	Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence	72316-72342	6	0.778
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	NC_020062	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence	757493-757519	6	0.778
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	KY622015	Shewanella phage SppYZU01, complete genome	36250-36276	6	0.778
NZ_CP054620_2	2.5\|248683\|27\|NZ_CP054620\|PILER-CR	248683-248709	27	NC_009620	Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence	1511820-1511846	7	0.741

1. spacer 1.1|39428|43|NZ_CP054620|CRISPRCasFinder matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

acccgacgcctggccgcccttgtggccagcttcggctgcgcgc	CRISPR spacer
acccgacgcctggccgcccttgtggccagcttcggctgcgcgc	Protospacer
*******************************************

2. spacer 2.1|248683|26|NZ_CP054620|CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccgacggcgatatgggccgcccggat	CRISPR spacer
ccgacggcgatatgggccgcccggat	Protospacer
**************************

3. spacer 2.2|248727|27|NZ_CP054620|CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cccggccgaaccgactcggcaagactc	CRISPR spacer
cccggccgaaccgactcggcaagactc	Protospacer
***************************

4. spacer 2.3|248772|26|NZ_CP054620|CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gggcagttcagcggcggttctggggt	CRISPR spacer
gggcagttcagcggcggttctggggt	Protospacer
**************************

5. spacer 2.4|248816|29|NZ_CP054620|CRT matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

accggccccgaatcgactcgaccggccgt	CRISPR spacer
accggccccgaatcgactcgaccggccgt	Protospacer
*****************************

6. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

ccgacggcgatatgggccgcccggatt	CRISPR spacer
ccgacggcgatatgggccgcccggatt	Protospacer
***************************

7. spacer 2.6|248727|28|NZ_CP054620|PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

cccggccgaaccgactcggcaagactcc	CRISPR spacer
cccggccgaaccgactcggcaagactcc	Protospacer
****************************

8. spacer 2.7|248772|27|NZ_CP054620|PILER-CR matches to NZ_CP054620 (Azospirillum oryzae strain KACC 14407 plasmid unnamed5, complete sequence) position: , mismatch: 0, identity: 1.0

gggcagttcagcggcggttctggggtt	CRISPR spacer
gggcagttcagcggcggttctggggtt	Protospacer
***************************

9. spacer 2.1|248683|26|NZ_CP054620|CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.846

ccgacggcgatatgggccgcccggat	CRISPR spacer
gccagggcgatctgggccgcccggat	Protospacer
 * * ****** **************

10. spacer 2.1|248683|26|NZ_CP054620|CRT matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.846

ccgacggcgatatgggccgcccggat	CRISPR spacer
gccagggcgatctgggccgcccggat	Protospacer
 * * ****** **************

11. spacer 2.7|248772|27|NZ_CP054620|PILER-CR matches to MN657113 (Psychrobacter sp. strain ANT_P52 plasmid pA52P5, complete sequence) position: , mismatch: 4, identity: 0.852

gggcagttcagcggcggttctggggtt	CRISPR spacer
gtgtagttcagcgggggttttggggtt	Protospacer
* *.********** ****.*******

12. spacer 2.1|248683|26|NZ_CP054620|CRT matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 5, identity: 0.808

ccgacggcgatatgggccgcccggat	CRISPR spacer
cgagaggcgatatgggccgcgcggat	Protospacer
* .. *************** *****

13. spacer 2.4|248816|29|NZ_CP054620|CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.828

accggccccgaatcgactcgaccggccgt	CRISPR spacer
gagggcccggaatcgactcgaccggccat	Protospacer
.  ***** ******************.*

14. spacer 2.4|248816|29|NZ_CP054620|CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 5, identity: 0.828

accggccccgaatcgactcgaccggccgt	CRISPR spacer
gagggtccggaatcgactcgaccggccgt	Protospacer
.  **.** ********************

15. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.815

ccgacggcgatatgggccgcccggatt	CRISPR spacer
gccagggcgatctgggccgcccggatc	Protospacer
 * * ****** **************.

16. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to NZ_CP032324 (Azospirillum brasilense strain MTCC4035 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.815

ccgacggcgatatgggccgcccggatt	CRISPR spacer
gccagggcgatctgggccgcccggatc	Protospacer
 * * ****** **************.

17. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to NZ_CP014767 (Pontibacter akesuensis strain AKS 1T plasmid Paks1, complete sequence) position: , mismatch: 5, identity: 0.815

ccgacggcgatatgggccgcccggatt	CRISPR spacer
tcatcggtgatgtgggccgcccggatt	Protospacer
.*. ***.***.***************

18. spacer 2.1|248683|26|NZ_CP054620|CRT matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 6, identity: 0.769

ccgacggcgatatgggccgcccggat	CRISPR spacer
ccgacggcgatatgcgccgccacatg	Protospacer
************** ******  .

19. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 6, identity: 0.778

ccgacggcgatatgggccgcccggatt	CRISPR spacer
cgagaggcgatatgggccgcgcggatc	Protospacer
* .. *************** *****.

20. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 6, identity: 0.778

ccgacggcgatatgggccgcccggatt	CRISPR spacer
agcgcggcgagatggcccgcccggatt	Protospacer
   .****** **** ***********

21. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to KY622015 (Shewanella phage SppYZU01, complete genome) position: , mismatch: 6, identity: 0.778

ccgacggcgatatgggccgcccggatt	CRISPR spacer
atcagcgcgctatgggccgcccggatt	Protospacer
 . *  *** *****************

22. spacer 2.5|248683|27|NZ_CP054620|PILER-CR matches to NC_009620 (Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequence) position: , mismatch: 7, identity: 0.741

ccgacggcgatatgggccgcccggatt	CRISPR spacer
ccgacggcgatatgcgccgccacatga	Protospacer
************** ******  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

6. NZ_CP054616

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

565215 : 574440

Tetraselmis_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149199075.1\|565215_567501_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	5.6e-182	43.6
WP_149199076.1\|567708_568470_+	pyruvate formate lyase-activating protein	A0A2P0VNQ0	Tetraselmis_virus	4.1e-20	28.6
WP_149199077.1\|568492_570031_-	FAD-binding protein	S4VXI2	Pandoravirus	2.2e-33	26.8
WP_149199358.1\|570252_571305_-	serine hydrolase	A0A088FA76	Mycobacterium_phage	5.0e-16	26.7
WP_149199078.1\|571474_572539_-	substrate-binding domain-containing protein	C6ZCU4	Enterobacteria_phage	1.1e-15	25.4
WP_149199079.1\|572572_572869_-	hypothetical protein	NA	NA	NA	NA
WP_149199080.1\|572934_574440_-	tagaturonate reductase	H8ZJP8	Ostreococcus_tauri_virus	2.6e-18	27.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

7. NZ_CP054619

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054619_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054619_1

1273713-1274603

TypeI

I-C

Consensus_repeat	Method
TTGCCCCCACCCGGGGGCGTGGATTGAAAC	PILER-CR
TTGCCCCCACCCGGGGGCGTGGATTGAAACA	CRISPRCasFinder
NCCCCNCNCGGGGGCGTGGATTGAAAN	CRT

13 spacers

cas7b,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP054619_1

>merge|NZ_CP054619|1|1273713-1274603|PILER-CR,CRISPRCasFinder,CRT
TTGCCCCCACCCGGGGGCGTGGATTGAAACGTCGGGAGTGCGGCAGATGATGGTCATGGGTCAGCGATTGCCCCCACCCGGGGGCGTGGATTGAAACATCGCCGACGCAGCGTCGATGCTGCCCTAAGGCTTGTTTGCCCCCACCGGGGGCGTGGATTGAAACACGATGCTGGTCAGGTGGTACGGCGGATCGCTGGTTTGCCCCCACCCAGGGGCGTGGATTGAAACTCGGCGTTGGCGATGCGGGACTCCATCAGGTCCAGGTTTGCCCCCACCCGGGGGCGTGGATTGAAACATGTGCCGGCGGGCCGCCGTGTTGCCTTCCATCAAGTTCGCCCTCGCCCGGGGGGCGTGGATTGAAACCGGGCCATGCGGCGAGCACCCTGCGGCGAGGATGGTTTGCCCCCACACGGGGGCGTGGATTGAAACCGCCGAGCCTGGGAAATCGTTCGAGTTACCCGCCGTTCGTCCCCACACGGGGGCGTGAATTAAAACAAGCCCAACGTGTTGGTGCTTCAGGAGAAGGTCTGGTTCGCCCCCACACCTGGTCGTGGATTGAAAGCTGCGGGCTTATACCGGCTGGCGGCAGAGGGGAGCGTTCGCCTTCACGCGGAGCCGTGGATTGAAACGCCGACAAGAAGGCCCGTATGGAGACCGACGCCGGTTCGCCCCCACGTGAGGGCGTGGATTGAAACTCCTCTGGTGACATCTCGTCATCAGCCCGAATGTGTCTCGCCCCCCTTGGGGGCGTGGATTGAAAGATCTGTGCCTCAAAGACGATATTCGGGTTGTCGATGATCTCGCCCCACAGGGGTGTGGATTGAAACTCGCTGATCTGAAGAACTTGTTGCTCGATGCGGTAGTCTTGCCCCACGGGAAGCCTGGATGGAA

>NZ_CP054619|1|1|1273713-1274007|PILER-CR
TTGCCCCCACCCGGGGGCGTGGATTGAAAC	GTCGGGAGTGCGGCAGATGATGGTCATGGGTCAGCGA
TTGCCCCCACCCGGGGGCGTGGATTGAAAC	ATCGCCGACGCAGCGTCGATGCTGCCCTAAGGCTTGT
TTGCCCCCACCGGGGGCGTGGATTGAAACA	CGATGCTGGTCAGGTGGTACGGCGGATCGCTGGTT
TGCCCCCACCCAGGGGCGTGGATTGAAACT	CGGCGTTGGCGATGCGGGACTCCATCAGGTCCAGGTT
TGCCCCCACCCGGGGGCGTGGATTGAAAC

>NZ_CP054619|1|1|1273713-1274408|CRISPRCasFinder
TTGCCCCCACCCGGGGGCGTGGATTGAAACG	TCGGGAGTGCGGCAGATGATGGTCATGGGTCAGCGA
TTGCCCCCACCCGGGGGCGTGGATTGAAACA	TCGCCGACGCAGCGTCGATGCTGCCCTAAGGCTTG
TTTGCCCCCACCGGGGGCGTGGATTGAAACA	CGATGCTGGTCAGGTGGTACGGCGGATCGCTGGT
TTGCCCCCACCCAGGGGCGTGGATTGAAACT	CGGCGTTGGCGATGCGGGACTCCATCAGGTCCAGGT
TTGCCCCCACCCGGGGGCGTGGATTGAAACA	TGTGCCGGCGGGCCGCCGTGTTGCCTTCCATCAAGTT
CGCCCTCGCCCGGGGGGCGTGGATTGAAACC	GGGCCATGCGGCGAGCACCCTGCGGCGAGGATGGT
TTGCCCCCACACGGGGGCGTGGATTGAAACC	GCCGAGCCTGGGAAATCGTTCGAGTTACCCGCCGT
TCGTCCCCACACGGGGGCGTGAATTAAAACA	AGCCCAACGTGTTGGTGCTTCAGGAGAAGGTCTGGT
TCGCCCCCACACCTGGTCGTGGATTGAAAGC	TGCGGGCTTATACCGGCTGGCGGCAGAGGGGAGCGT
TCGCCTTCACGCGGAGCCGTGGATTGAAACG	CCGACAAGAAGGCCCGTATGGAGACCGACGCCGGT
TCGCCCCCACGTGAGGGCGTGGATTGAAACT

>NZ_CP054619|1|1|1273717-1274603|CRT
CCCCACCCGGGGGCGTGGATTGAAA	CGTCGGGAGTGCGGCAGATGATGGTCATGGGTCAGCGATTGC
CCCCACCCGGGGGCGTGGATTGAAA	CATCGCCGACGCAGCGTCGATGCTGCCCTAAGGCTTGTTTGC
CCCCACCGGGGGCGTGGATTGAAAC	ACGATGCTGGTCAGGTGGTACGGCGGATCGCTGGTTTGC
CCCCACCCAGGGGCGTGGATTGAAA	CTCGGCGTTGGCGATGCGGGACTCCATCAGGTCCAGGTTTGC
CCCCACCCGGGGGCGTGGATTGAAA	CATGTGCCGGCGGGCCGCCGTGTTGCCTTCCATCAAGTTCGCC
CTCGCCCGGGGGGCGTGGATTGAAA	CCGGGCCATGCGGCGAGCACCCTGCGGCGAGGATGGTTTGC
CCCCACACGGGGGCGTGGATTGAAA	CCGCCGAGCCTGGGAAATCGTTCGAGTTACCCGCCGTTCGT
CCCCACACGGGGGCGTGAATTAAAA	CAAGCCCAACGTGTTGGTGCTTCAGGAGAAGGTCTGGTTCGC
CCCCACACCTGGTCGTGGATTGAAA	GCTGCGGGCTTATACCGGCTGGCGGCAGAGGGGAGCGTTCGC
CTTCACGCGGAGCCGTGGATTGAAA	CGCCGACAAGAAGGCCCGTATGGAGACCGACGCCGGTTCGC
CCCCACGTGAGGGCGTGGATTGAAA	CTCCTCTGGTGACATCTCGTCATCAGCCCGAATGTGTCTCG
CCCCCCTTGGGGGCGTGGATTGAAA	GATCTGTGCCTCAAAGACGATATTCGGGTTGTCGATGATCT
CGCCCCACAGGGGTGTGGATTGAAA	CTCGCTGATCTGAAGAACTTGTTGCTCGATGCGGTAGTCT
TGCCCCACGGGAAGCCTGGATGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054619.1\|WP_149198359.1\|1263747_1264044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198387
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP054619.1\|WP_149198372.1\|1279729_1280659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283041
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP054619.1\|WP_149198362.1\|1265997_1266285_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP054619.1\|WP_149198373.1\|1281381_1281831_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198360.1\|1264087_1264423_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP054619.1\|WP_149198370.1\|1279067_1279256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP054619.1\|WP_149198374.1\|1282008_1282431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521
NZ_CP054619.1\|WP_149198368.1\|1277724_1277982_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.4405e-47
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	1.78767e-09
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.53382e-63
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	gnl\|CDD\|198387	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs. This family includes a group of functionally uncharacterized proteins from bacteria and their eukaryotic homologs which are present only in metazoa. These proteins might have nuclease activities and possibly be engaged in DNA repair or recombination, since they share sequence homology with the catalytic GIY-YIG domain of bacterial UvrC DNA repair proteins. Distinct from their prokaryotic relatives, the eukaryotic homologs contain an N-terminal extension that includes the region of approximately 3-4 ankyrin repeats, unique motifs mediating protein-protein interactions. Some of eukaryotic homologs do have an additional LEM domain located between ankyrin repeats region and GIY-YIG domain. The LEM domain, found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The different domain composition of the eukaryotic homologs suggests that they might participate in interactions with multiple partners and implies important cellular function.	3.13554e-10
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	2.0826e-12
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	9.48585e-27
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.05467e-37
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.64404e-23
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	4.09409e-56
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.74778e-51
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	5.38834e-09
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	2.27179e-24

>NZ_CP054619.1|WP_174757264.1|1272352_1273519_+|type-I-CRISPR-associated-protein-Cas7
MTTDVLTEPVRLADIAYTEIPEVLLDPARRHDCLFLFDVENGNPNGDPDAENSPRTEGIHGHGIVTDGCLKSKLRNLIREYGGAETFIQPAIPLNNHIRDAVVAAGGNLAEVTLDEQDGDHDGLTDILNHIDSLDDFVVDGNKVTYTGAQAKKSHIDKALKGELPTDSPIWKAISSQKLGSRLESALKGKKSGVTDEVRQAAEVEMVRRFADVRYFGAVMSTGLNAGQRRGPVQIVPATSIDPIYPMEMAITRQAKTTAERLAKSRTEIGRRSMVTYALYRGHMFYNAPLGIQNGMTADDMRLLWESMMRMFTLDHAAGRAMMRMRGLYVWSHKSRYGDAPFDRLFDMVKVAKIVKSETEIPRSFEDYQINVGELEPNDRIVFTRLIG
>NZ_CP054619.1|WP_149198366.1|1270403_1272317_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MLPDLLSIASSGTGIFAAGRPGFSLRAADARVTVRSLGGLFIEPWPEIDARRKARVLAPDLRRSGKQVEGREGAIPFFDRADYTFGLTGEDGPVKADLLHRGYLRVLSEAAEETGSQRLRQALEALSDARAVSLAVAEAKSRFDLGQRSVVAVYDDEGPLFDDTDFTIFWQDRVSLEIVDAKASRQQCSVCGTADQPVVSKFPSEVVLTGQKCQITSFNAASFQSYGKEQTRQASICVRCASALPAAMQAMLQPGSGYSRVVYRHTPKSGASDPMKSLTAIFWVEPPPASALDGLDWEAAFADFDMEGTLSASIGLVETQDLQEGERTATPEPEQILSLLQGIADGADPRRAKAIDAAAFHVVLLAPNTGRLIVREHLRRNITPMLQSAGRFLRAARGFRFDEKDRVLVRRPLGVASLGRLLHQRGTESPTLVRSLLRTAMTEETPPVALRQIAVSRLVGMLVKGQRDDAVQDAATAALLLHLSYTNSRYRTMAESNEITEDQVDHMTSAAFHSGRLLAVMDAIQRTTDPKIPKTSAEKIVATAAAFPARAMVPLQKRTIAVYVPKVADKYPGLARLYGAALDATVRRAVECGGIPDHLDASQQSEFLAGFSLQRELMRREQEARRLRRENPTNDAK
>NZ_CP054619.1|WP_174757262.1|1269700_1270414_+|type-I-C-CRISPR-associated-protein-Cas5
MRDDDRWDFEVRVKGQRACFTMPMFGVERRTYPFPTPSAMRGLLEAVFWRPEFRYEISRVGIVKPGQEQAITRTELQARQSLRSLGTPAKRTLRTTSYLLDVEYLVQARILLHRHAEPGNTHRKYLEQLTRRLTRGAHFQTPYLGLREFAAEVSLSDGTGDRPSRYLNAEVGPVFFDQAFIPDGSEMSFKRKDADGVREVVGRTRPLFFDMRLVEGWVEVPRDLYDDIQALEARHAA
>NZ_CP054619.1|WP_149198364.1|1267308_1269636_-|DEAD/DEAH-box-helicase
MVDDPITLARGHSRNHRGGEHYLADHLSSVQLTAAEFAKWLHFRRSDGRGAEIASLVAGLIAIFHDAAKASEAFQRYLAAIDAGTTPVRTIHAGPSAVASWEWVLLAMMGARQGVSKAVASLHAERAFSLYEVLLPVEGHHAGLGAASTCVQRLEGLRTSPEAAEAAVAALRFLKATGLLPTRLPFFPPLEGTRRDMFIRMVSSAAFDADRLDTENHFRPHAKGLRSNWMSIREVAERFGQNQQELLARVEPMVQEGRVSRVVADARVELHRNAVDAAGEAGLYRMEAPTGSGKTRAYMAFASQCVLDHGFRRIIIALPFTSIIDQTAQTLKEILEAGGSPLAVLEHHSTADLGDDEWQGRTAYRLAEENWDAPVVITTFVQLFESLLANRPGRMRKLHNMARSVIVLDEVQALPVGLLDTTMDVLHSLVEDCGCIVLFSTATQPPYEAKMPSLRGMPVREITKRPHHLTKELRRVRYDLLGTPSVPLTVGDIAGMTLQRPQSLVVTNTRRDATAIFDIMADQPGKVESLYYLSSSLCPAHRKQVIATVAACLDAKAPIHLVSTQVIEAGVDLDFPWGARAFGPLGSIVQTAGRVNRNGMLKEAGNPVLGTLAVFHLEGGKLPPGEYTQAANILLRLLPNAPRLVGRDGEDMGLDLSDPDFMRRYYGALIEFGTDARGIQDLRRKLDFSEVAERYRLIPDDQVAVCIDWEGRGHAALAKLLKESSRVAFRQCQQYIVQIPLSKKQDVLDAGLADDTACGIMRWAGGYDGRLGILL
>NZ_CP054619.1|WP_149198363.1|1266309_1266693_-|hypothetical-protein
MVRKKSSLGVKPAAPKCPFSYITGPFYVYWLVDPRTNDTIYVGRGRGRRARSYYNMASNEKYLLPSHNGQLNQWISEIRSTGMEVGIFAKDCFSNKKMMQKLEKDLIKQHGRFDKGTGTLANRNNGG
>NZ_CP054619.1|WP_149198362.1|1265997_1266285_-|hypothetical-protein
MVALSKEWFDYHLTPAGWHHGTERLDGGTINEEPVPDGCVLTVRVHEEIGSIGGKLHNWVAVHWQHADTALVKELLIRHGQLPPHSGIETATVDW
>NZ_CP054619.1|WP_149198361.1|1264820_1265519_+|hypothetical-protein
MSGKLSFRERPEQQESSGVRSPAPSGSTVRVVLRLGGAVDHPVTLIQTLARCGLVLRKAHGVVTRLVAGEKLPVLLADAPEPAEVISTLERLGVAVGFPHPPVSIDVKAIRAKLGLIQRKFAARFRFNVDSVQNWEQSRYVPDPPTRILLKVIEQHPEAVEDVLGSRVADDMVVAGRPRLELAAEPMGWYGRPGVGEDTGRFNSGRVPREPAALPQLHWRRRATSGRSQRLR
>NZ_CP054619.1|WP_149198360.1|1264087_1264423_-|hypothetical-protein
MNRVVIVWAALVALLSGPAQAQLGPPQSKVQRPVCEVIQDASNLMDLQPKLSDALEQCGSESWVSVNLGIFSAADVAGLICRPGLPVVVDGGKLGCMGGVWSVNRRVVKTK
>NZ_CP054619.1|WP_149198359.1|1263747_1264044_+|hypothetical-protein
MNTQTAIVVSAAILGGSVLYGLAGRPPSNVGQFQMVKAGDTSVWVLDSATGSLQVCGYSTHTPTAERPAIKRCFMVERDRYLTDAEVGITPPEPPRGK
>NZ_CP054619.1|WP_174757260.1|1261446_1263069_+|hypothetical-protein
MEDKTENKNDVVAVLDDFRGRMTARDRKDPGMAQVILGSFTMARLTTDELDAVMKFLVDELGLTRSEVGVKIKRARVVEALGTYPRDLEGYVDAYSRRHDVRPTLGNWVRVSPRAGTKLDMHGSRFDIMTAEKLAQYPEDSEVLAFHATLAPTIIDERRLVDRLKMFAEDFGLGYSEAGIDRAWAEWVANYRTQTLYWLGHKLGVDLRGTEEEAQIQLEWDRFLAAILPEQPAAIADGGDNADQSPEVVRAVLGHFIWQVRRKVCGIPVDHHMMPVFIGPQGGGKSEMVKRLLSPLAEVRAWVDSDFAKLTDDRNTELLGNIPVHFLDEMSYASKSDIEVTKRKISAEDVTYRPLYGNTQRTIRNIATFIGCSNQELGHSVVDTTGNRRFFPIRVKARLDWNAVNSVNWLLLWWSVDIAAQSPIKAVLDRVRGVQEANRTRSQVEEWLDAEWADLMTTDHVTAWTPASKLYPLFRDFAQIAFRNPLELKDFRNEMRRLAGLPNGRVYHAIWTGGNHVFRLGQADMASGKPKLGLVQGCKP
>NZ_CP054619.1|WP_149198368.1|1277724_1277982_-|hypothetical-protein
MISEWNRHDLLVTRDRSEPLGSRYFAKVTRSAPSRRQTQADEYAGRVMPITAEIDRTGVTIVQGLADALNARRRSHPSTVRDVIL
>NZ_CP054619.1|WP_149198369.1|1278049_1278754_-|recombinase-family-protein
MRYVAYFRVSTRDQGRSGLGLDAQRAAVQRFLRDGDVVVGEYQDIETGKRDDREGLGQALRACRIYNAKLLIARLDRLSRNIAFITRLMSDGVQFVSVDNPAINELTAHILAAVAEAERKAISDRTRLALAAAKARGTKLGNPANLRGQDEGRRRGAATVAVQAAKRAADLQDVIAAIQADGVTSRRGIARELNRRGIRTARDREWSAGQVHVLLARLLENFPKLSTTEAVTAT
>NZ_CP054619.1|WP_149198370.1|1279067_1279256_-|hypothetical-protein
MVEVGQRFVLHAGRKTVWEVVGVTTTPDGLRHVQMVSVEPPGERKTLAETELERGRSFRHLG
>NZ_CP054619.1|WP_149198371.1|1279286_1279682_-|hypothetical-protein
MGLLGYDEFLPVLVAGLDCEFEPAQEAAEAALECYGDQAIAALDAGFDTLEGFQRLMAFGLASRLGGDAGVGLIAKHFTAFVDDDPNAISMAATVLDAEPLNALFKTKLGRNDPCPLGTGKKVKKCCCGGN
>NZ_CP054619.1|WP_149198372.1|1279729_1280659_-|hypothetical-protein
MASLLRHLPAERWAAHADALAERWPRWAGEPARFAAPLIAQYRPDTAAVLFEGFAASLVDAIEPDADKLLGVLDAVRHLGRDQAHAVLTAVVRVVEDSQRLADWQTAALADAALATRHPDRLEIVRQWLDRTAAEERTFHEALVRLGEWLFGDASRVGFVRDYALDYTQQAVAPRASPVFRPAIPPVEIDDALRGLRLDDARSATRLLQQHLEHPPGDEAPDRWDDFLALVQGGLPRPEGRPAKRVWPEVFLGGLLTTLRQPRLDLSPADQETIWMVVTADIDLPPGLEAALPRLQEVPREVMVAEAEP
>NZ_CP054619.1|WP_149198373.1|1281381_1281831_+|hypothetical-protein
MIAAAKNMAGHEDQALNLIRQVRPKVCLNRLIVGLADDPLEASGTLLRGMVGMKIKGDPKSAVVGIAFVVFELQIQRATMQSPVVRVGHAGTNKPSIPIDCETDFEFSEHPPLKRYCPVRDLFQGYRPRLVPADGCVQRAGLNPKGCWP
>NZ_CP054619.1|WP_149198374.1|1282008_1282431_-|hypothetical-protein
MTSSGPLDWLIDRYASRPAAIRKLIDLAIRQPVRWNADQEIRYRSGIIARLTAMMELAEDASVADKAVAFREMFTHADSLEVQRFLTYLIFLIIPDGGWPEPVVWDSAAGRPRSFHLDSQLEYAEKLVVTLLARRLRSES
>NZ_CP054619.1|WP_149198375.1|1282518_1284357_-|recombinase-family-protein
MTLAFSYIRMSTPEQLKGDSLRRQLERSRRLAEARGWTLDETFRDLGKSAYRGTHIESGAFGEFLERVRAGKVPTGSVLIVESLDRLSRETVPVALQTFLGIINAGLVLVTLDSEPPREFRADSANVTFDLMLSILELSRAHAESRRKSDLLKPAWENKRRQAREDKKPLTRRLPMWIRIVDGQFEIIPERAEVVREIFELSVAGIGREKLVKLLNGRGIPAPGGGEWGKSGISHILDTPAVIGRFQPSETYYENGRKLRRPVGDIIEGYFPPVIPVDLYNRAHAARQSRSLGYGGRTGWTFSNIFRGLCYCGACGGKMEYFNKGNNLEKGGRYFMCASVKRGSGCQERVTYRYVHFERAFLDNCHHFDFSRLNAAAASDLQHVRERIAELALEQTDLNKRYATILELAETNGLSDRIRTRVAELETALDLNAAEQDKLRVKEATLAHSGQSDTIRQLLEVRGRMETATGEDLYRIRAQLSAMIREFTVGIVFWNGIATVAVGNSGMATPFMALYMFNKAGKLLIRTGLEFGPSTDQHAVPVGDIGTGTPEELQERLRAVDATLKAVSALKARMEPTIPEAERETGMERFKARWGDMDPLPASASLVLEAPG
>NZ_CP054619.1|WP_174757266.1|1284355_1284745_+|aminoacyl-tRNA-hydrolase
MAATTVQVTLEQWGGIGQHVNKTETAVQLRFDVRRSPNLPDPVRYRLERLAGSRLTQDGVLILVADRYRSQMRNREDARERLIDLIREAAAPPPPPRRPTKPTKGSKERRLEGKAKRSEVKKMRGNVHD
>NZ_CP054619.1|WP_149198376.1|1284878_1286114_+|MFS-transporter
MSHPSAALPSPTSARLSVGFAWVGHSLMHIVSALFLTIVLALETEWKLSYDELIRLWTLGAFMIGLGAPLAGWLGDRWSSAGMIAVFYLMTGGGAVLAGLSDGPEMLMWSLALLGLGASIYHPVGMAWMMANAENRGKAMGWLGLFGTFGVATAAVVAGSLTQWLNWRMAFIIPGAICLVLGVVLALLMMSGVVQDRHADVKPQPKPSRGDVVRAFFVLSLTMVCAGLIFNAMQVVLPKLFEARLGGWLGTGTLGVGGLVTAVYLISALPQMVGGVLADRHSLKRVYMLCLLAQIPLMAAVAVLADVPLVAAAAFVVIASQTQIPAENMLLARYTPDKHRGLAFGAKYILSFGAGPLAVQLVAWVYERTGEFTMLYLTLSALAAIAFAAALLLPDDRRKAEPVAEPLPAAE

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Crispr_ID: NZ_CP054619_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054619_3

1276511-1276724

TypeI

Consensus_repeat	Method
GGGGCGTGGATTGAAAC	PILER-CR

3 spacers

cas7b,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP054619_3

>merge|NZ_CP054619|3|1276511-1276724|PILER-CR
GGCGTGGATTGAAACAATTGAGGCGATCAGGCGTTCCGTGCCGACCCCAAGTTCGCCCCCACGCGGGGGCGTGAATTGAAACACGCTGTCCGCCACCGGTAAGAGCCTTGCCGTTGGTCTCGCCGCCATGGGGGCGTGGATTGAAACACCGAACGCGGACAGGCGGCCTCGTGATCTGGACCGTCTCGCTCCCCTCAGGGGCGTGGATCGAAAC

>NZ_CP054619|3|3|1276511-1276724|PILER-CR
GGCGTGGATTGAAACAA	TTGAGGCGATCAGGCGTTCCGTGCCGACCCCAAGTTCGCCCCCACGCGGG
GGCGTGAATTGAAACAC	GCTGTCCGCCACCGGTAAGAGCCTTGCCGTTGGTCTCGCCGCCATGGG
GGCGTGGATTGAAACAC	CGAACGCGGACAGGCGGCCTCGTGATCTGGACCGTCTCGCTCCCCTCAGG
GGCGTGGATCGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054619.1\|WP_149198359.1\|1263747_1264044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198387
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP054619.1\|WP_149198372.1\|1279729_1280659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283041
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP054619.1\|WP_149198362.1\|1265997_1266285_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP054619.1\|WP_149198373.1\|1281381_1281831_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198360.1\|1264087_1264423_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP054619.1\|WP_149198370.1\|1279067_1279256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP054619.1\|WP_149198374.1\|1282008_1282431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521
NZ_CP054619.1\|WP_149198368.1\|1277724_1277982_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.4405e-47
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	1.78767e-09
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.53382e-63
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	gnl\|CDD\|198387	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs. This family includes a group of functionally uncharacterized proteins from bacteria and their eukaryotic homologs which are present only in metazoa. These proteins might have nuclease activities and possibly be engaged in DNA repair or recombination, since they share sequence homology with the catalytic GIY-YIG domain of bacterial UvrC DNA repair proteins. Distinct from their prokaryotic relatives, the eukaryotic homologs contain an N-terminal extension that includes the region of approximately 3-4 ankyrin repeats, unique motifs mediating protein-protein interactions. Some of eukaryotic homologs do have an additional LEM domain located between ankyrin repeats region and GIY-YIG domain. The LEM domain, found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The different domain composition of the eukaryotic homologs suggests that they might participate in interactions with multiple partners and implies important cellular function.	3.13554e-10
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	2.0826e-12
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	9.48585e-27
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.05467e-37
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.64404e-23
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	4.09409e-56
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.74778e-51
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	5.38834e-09
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	2.27179e-24

>NZ_CP054619.1|WP_174757264.1|1272352_1273519_+|type-I-CRISPR-associated-protein-Cas7
MTTDVLTEPVRLADIAYTEIPEVLLDPARRHDCLFLFDVENGNPNGDPDAENSPRTEGIHGHGIVTDGCLKSKLRNLIREYGGAETFIQPAIPLNNHIRDAVVAAGGNLAEVTLDEQDGDHDGLTDILNHIDSLDDFVVDGNKVTYTGAQAKKSHIDKALKGELPTDSPIWKAISSQKLGSRLESALKGKKSGVTDEVRQAAEVEMVRRFADVRYFGAVMSTGLNAGQRRGPVQIVPATSIDPIYPMEMAITRQAKTTAERLAKSRTEIGRRSMVTYALYRGHMFYNAPLGIQNGMTADDMRLLWESMMRMFTLDHAAGRAMMRMRGLYVWSHKSRYGDAPFDRLFDMVKVAKIVKSETEIPRSFEDYQINVGELEPNDRIVFTRLIG
>NZ_CP054619.1|WP_149198366.1|1270403_1272317_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MLPDLLSIASSGTGIFAAGRPGFSLRAADARVTVRSLGGLFIEPWPEIDARRKARVLAPDLRRSGKQVEGREGAIPFFDRADYTFGLTGEDGPVKADLLHRGYLRVLSEAAEETGSQRLRQALEALSDARAVSLAVAEAKSRFDLGQRSVVAVYDDEGPLFDDTDFTIFWQDRVSLEIVDAKASRQQCSVCGTADQPVVSKFPSEVVLTGQKCQITSFNAASFQSYGKEQTRQASICVRCASALPAAMQAMLQPGSGYSRVVYRHTPKSGASDPMKSLTAIFWVEPPPASALDGLDWEAAFADFDMEGTLSASIGLVETQDLQEGERTATPEPEQILSLLQGIADGADPRRAKAIDAAAFHVVLLAPNTGRLIVREHLRRNITPMLQSAGRFLRAARGFRFDEKDRVLVRRPLGVASLGRLLHQRGTESPTLVRSLLRTAMTEETPPVALRQIAVSRLVGMLVKGQRDDAVQDAATAALLLHLSYTNSRYRTMAESNEITEDQVDHMTSAAFHSGRLLAVMDAIQRTTDPKIPKTSAEKIVATAAAFPARAMVPLQKRTIAVYVPKVADKYPGLARLYGAALDATVRRAVECGGIPDHLDASQQSEFLAGFSLQRELMRREQEARRLRRENPTNDAK
>NZ_CP054619.1|WP_174757262.1|1269700_1270414_+|type-I-C-CRISPR-associated-protein-Cas5
MRDDDRWDFEVRVKGQRACFTMPMFGVERRTYPFPTPSAMRGLLEAVFWRPEFRYEISRVGIVKPGQEQAITRTELQARQSLRSLGTPAKRTLRTTSYLLDVEYLVQARILLHRHAEPGNTHRKYLEQLTRRLTRGAHFQTPYLGLREFAAEVSLSDGTGDRPSRYLNAEVGPVFFDQAFIPDGSEMSFKRKDADGVREVVGRTRPLFFDMRLVEGWVEVPRDLYDDIQALEARHAA
>NZ_CP054619.1|WP_149198364.1|1267308_1269636_-|DEAD/DEAH-box-helicase
MVDDPITLARGHSRNHRGGEHYLADHLSSVQLTAAEFAKWLHFRRSDGRGAEIASLVAGLIAIFHDAAKASEAFQRYLAAIDAGTTPVRTIHAGPSAVASWEWVLLAMMGARQGVSKAVASLHAERAFSLYEVLLPVEGHHAGLGAASTCVQRLEGLRTSPEAAEAAVAALRFLKATGLLPTRLPFFPPLEGTRRDMFIRMVSSAAFDADRLDTENHFRPHAKGLRSNWMSIREVAERFGQNQQELLARVEPMVQEGRVSRVVADARVELHRNAVDAAGEAGLYRMEAPTGSGKTRAYMAFASQCVLDHGFRRIIIALPFTSIIDQTAQTLKEILEAGGSPLAVLEHHSTADLGDDEWQGRTAYRLAEENWDAPVVITTFVQLFESLLANRPGRMRKLHNMARSVIVLDEVQALPVGLLDTTMDVLHSLVEDCGCIVLFSTATQPPYEAKMPSLRGMPVREITKRPHHLTKELRRVRYDLLGTPSVPLTVGDIAGMTLQRPQSLVVTNTRRDATAIFDIMADQPGKVESLYYLSSSLCPAHRKQVIATVAACLDAKAPIHLVSTQVIEAGVDLDFPWGARAFGPLGSIVQTAGRVNRNGMLKEAGNPVLGTLAVFHLEGGKLPPGEYTQAANILLRLLPNAPRLVGRDGEDMGLDLSDPDFMRRYYGALIEFGTDARGIQDLRRKLDFSEVAERYRLIPDDQVAVCIDWEGRGHAALAKLLKESSRVAFRQCQQYIVQIPLSKKQDVLDAGLADDTACGIMRWAGGYDGRLGILL
>NZ_CP054619.1|WP_149198363.1|1266309_1266693_-|hypothetical-protein
MVRKKSSLGVKPAAPKCPFSYITGPFYVYWLVDPRTNDTIYVGRGRGRRARSYYNMASNEKYLLPSHNGQLNQWISEIRSTGMEVGIFAKDCFSNKKMMQKLEKDLIKQHGRFDKGTGTLANRNNGG
>NZ_CP054619.1|WP_149198362.1|1265997_1266285_-|hypothetical-protein
MVALSKEWFDYHLTPAGWHHGTERLDGGTINEEPVPDGCVLTVRVHEEIGSIGGKLHNWVAVHWQHADTALVKELLIRHGQLPPHSGIETATVDW
>NZ_CP054619.1|WP_149198361.1|1264820_1265519_+|hypothetical-protein
MSGKLSFRERPEQQESSGVRSPAPSGSTVRVVLRLGGAVDHPVTLIQTLARCGLVLRKAHGVVTRLVAGEKLPVLLADAPEPAEVISTLERLGVAVGFPHPPVSIDVKAIRAKLGLIQRKFAARFRFNVDSVQNWEQSRYVPDPPTRILLKVIEQHPEAVEDVLGSRVADDMVVAGRPRLELAAEPMGWYGRPGVGEDTGRFNSGRVPREPAALPQLHWRRRATSGRSQRLR
>NZ_CP054619.1|WP_149198360.1|1264087_1264423_-|hypothetical-protein
MNRVVIVWAALVALLSGPAQAQLGPPQSKVQRPVCEVIQDASNLMDLQPKLSDALEQCGSESWVSVNLGIFSAADVAGLICRPGLPVVVDGGKLGCMGGVWSVNRRVVKTK
>NZ_CP054619.1|WP_149198359.1|1263747_1264044_+|hypothetical-protein
MNTQTAIVVSAAILGGSVLYGLAGRPPSNVGQFQMVKAGDTSVWVLDSATGSLQVCGYSTHTPTAERPAIKRCFMVERDRYLTDAEVGITPPEPPRGK
>NZ_CP054619.1|WP_174757260.1|1261446_1263069_+|hypothetical-protein
MEDKTENKNDVVAVLDDFRGRMTARDRKDPGMAQVILGSFTMARLTTDELDAVMKFLVDELGLTRSEVGVKIKRARVVEALGTYPRDLEGYVDAYSRRHDVRPTLGNWVRVSPRAGTKLDMHGSRFDIMTAEKLAQYPEDSEVLAFHATLAPTIIDERRLVDRLKMFAEDFGLGYSEAGIDRAWAEWVANYRTQTLYWLGHKLGVDLRGTEEEAQIQLEWDRFLAAILPEQPAAIADGGDNADQSPEVVRAVLGHFIWQVRRKVCGIPVDHHMMPVFIGPQGGGKSEMVKRLLSPLAEVRAWVDSDFAKLTDDRNTELLGNIPVHFLDEMSYASKSDIEVTKRKISAEDVTYRPLYGNTQRTIRNIATFIGCSNQELGHSVVDTTGNRRFFPIRVKARLDWNAVNSVNWLLLWWSVDIAAQSPIKAVLDRVRGVQEANRTRSQVEEWLDAEWADLMTTDHVTAWTPASKLYPLFRDFAQIAFRNPLELKDFRNEMRRLAGLPNGRVYHAIWTGGNHVFRLGQADMASGKPKLGLVQGCKP
>NZ_CP054619.1|WP_149198368.1|1277724_1277982_-|hypothetical-protein
MISEWNRHDLLVTRDRSEPLGSRYFAKVTRSAPSRRQTQADEYAGRVMPITAEIDRTGVTIVQGLADALNARRRSHPSTVRDVIL
>NZ_CP054619.1|WP_149198369.1|1278049_1278754_-|recombinase-family-protein
MRYVAYFRVSTRDQGRSGLGLDAQRAAVQRFLRDGDVVVGEYQDIETGKRDDREGLGQALRACRIYNAKLLIARLDRLSRNIAFITRLMSDGVQFVSVDNPAINELTAHILAAVAEAERKAISDRTRLALAAAKARGTKLGNPANLRGQDEGRRRGAATVAVQAAKRAADLQDVIAAIQADGVTSRRGIARELNRRGIRTARDREWSAGQVHVLLARLLENFPKLSTTEAVTAT
>NZ_CP054619.1|WP_149198370.1|1279067_1279256_-|hypothetical-protein
MVEVGQRFVLHAGRKTVWEVVGVTTTPDGLRHVQMVSVEPPGERKTLAETELERGRSFRHLG
>NZ_CP054619.1|WP_149198371.1|1279286_1279682_-|hypothetical-protein
MGLLGYDEFLPVLVAGLDCEFEPAQEAAEAALECYGDQAIAALDAGFDTLEGFQRLMAFGLASRLGGDAGVGLIAKHFTAFVDDDPNAISMAATVLDAEPLNALFKTKLGRNDPCPLGTGKKVKKCCCGGN
>NZ_CP054619.1|WP_149198372.1|1279729_1280659_-|hypothetical-protein
MASLLRHLPAERWAAHADALAERWPRWAGEPARFAAPLIAQYRPDTAAVLFEGFAASLVDAIEPDADKLLGVLDAVRHLGRDQAHAVLTAVVRVVEDSQRLADWQTAALADAALATRHPDRLEIVRQWLDRTAAEERTFHEALVRLGEWLFGDASRVGFVRDYALDYTQQAVAPRASPVFRPAIPPVEIDDALRGLRLDDARSATRLLQQHLEHPPGDEAPDRWDDFLALVQGGLPRPEGRPAKRVWPEVFLGGLLTTLRQPRLDLSPADQETIWMVVTADIDLPPGLEAALPRLQEVPREVMVAEAEP
>NZ_CP054619.1|WP_149198373.1|1281381_1281831_+|hypothetical-protein
MIAAAKNMAGHEDQALNLIRQVRPKVCLNRLIVGLADDPLEASGTLLRGMVGMKIKGDPKSAVVGIAFVVFELQIQRATMQSPVVRVGHAGTNKPSIPIDCETDFEFSEHPPLKRYCPVRDLFQGYRPRLVPADGCVQRAGLNPKGCWP
>NZ_CP054619.1|WP_149198374.1|1282008_1282431_-|hypothetical-protein
MTSSGPLDWLIDRYASRPAAIRKLIDLAIRQPVRWNADQEIRYRSGIIARLTAMMELAEDASVADKAVAFREMFTHADSLEVQRFLTYLIFLIIPDGGWPEPVVWDSAAGRPRSFHLDSQLEYAEKLVVTLLARRLRSES
>NZ_CP054619.1|WP_149198375.1|1282518_1284357_-|recombinase-family-protein
MTLAFSYIRMSTPEQLKGDSLRRQLERSRRLAEARGWTLDETFRDLGKSAYRGTHIESGAFGEFLERVRAGKVPTGSVLIVESLDRLSRETVPVALQTFLGIINAGLVLVTLDSEPPREFRADSANVTFDLMLSILELSRAHAESRRKSDLLKPAWENKRRQAREDKKPLTRRLPMWIRIVDGQFEIIPERAEVVREIFELSVAGIGREKLVKLLNGRGIPAPGGGEWGKSGISHILDTPAVIGRFQPSETYYENGRKLRRPVGDIIEGYFPPVIPVDLYNRAHAARQSRSLGYGGRTGWTFSNIFRGLCYCGACGGKMEYFNKGNNLEKGGRYFMCASVKRGSGCQERVTYRYVHFERAFLDNCHHFDFSRLNAAAASDLQHVRERIAELALEQTDLNKRYATILELAETNGLSDRIRTRVAELETALDLNAAEQDKLRVKEATLAHSGQSDTIRQLLEVRGRMETATGEDLYRIRAQLSAMIREFTVGIVFWNGIATVAVGNSGMATPFMALYMFNKAGKLLIRTGLEFGPSTDQHAVPVGDIGTGTPEELQERLRAVDATLKAVSALKARMEPTIPEAERETGMERFKARWGDMDPLPASASLVLEAPG
>NZ_CP054619.1|WP_174757266.1|1284355_1284745_+|aminoacyl-tRNA-hydrolase
MAATTVQVTLEQWGGIGQHVNKTETAVQLRFDVRRSPNLPDPVRYRLERLAGSRLTQDGVLILVADRYRSQMRNREDARERLIDLIREAAAPPPPPRRPTKPTKGSKERRLEGKAKRSEVKKMRGNVHD
>NZ_CP054619.1|WP_149198376.1|1284878_1286114_+|MFS-transporter
MSHPSAALPSPTSARLSVGFAWVGHSLMHIVSALFLTIVLALETEWKLSYDELIRLWTLGAFMIGLGAPLAGWLGDRWSSAGMIAVFYLMTGGGAVLAGLSDGPEMLMWSLALLGLGASIYHPVGMAWMMANAENRGKAMGWLGLFGTFGVATAAVVAGSLTQWLNWRMAFIIPGAICLVLGVVLALLMMSGVVQDRHADVKPQPKPSRGDVVRAFFVLSLTMVCAGLIFNAMQVVLPKLFEARLGGWLGTGTLGVGGLVTAVYLISALPQMVGGVLADRHSLKRVYMLCLLAQIPLMAAVAVLADVPLVAAAAFVVIASQTQIPAENMLLARYTPDKHRGLAFGAKYILSFGAGPLAVQLVAWVYERTGEFTMLYLTLSALAAIAFAAALLLPDDRRKAEPVAEPLPAAE

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Crispr_ID: NZ_CP054619_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054619_2

1275914-1276460

TypeI

I-C:NA

Consensus_repeat	Method
NGGGGCGTGGATTGAAAC	CRT
GAGTTCGCCTCCACGCGGGGGCGTGGATTGAAACG	PILER-CR

8 spacers

cas7b,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP054619_2

>merge|NZ_CP054619|2|1275914-1276460|CRT,PILER-CR
TGGGGCGTGGATTGAAACAAGGCGGTGATTACGTCAGAATCCTTCTGGGACCGTTGGTCCTACACAGGGTCGTGGATTGAAACTGCTGCGTCGTGGCTTGCGTCTGAGCCTCGCTGGGTTCGCTCCCACGCAGAGGCGTGGATTGAAACGACCTTGAGGTCGACAACATGGACCTGCTCGAGGCGTTCGCCCCCACACGGGGGTGGATTGAAACCAACTAGGCAATTTCGACGTTTGGACGTTGGAGAAGGTCACCCCCACGCGGGGGCGTGGATTGAAACTACGACCTGAAGCACAAGGCCGACGAGACCTGGAGTTCGCCTCCACATGGAGGCGTGGATTGAAACGTTGAACGGGTCGAGAAGCTTGAAGACCTGTGCGGGTTCGCCTCCACGCGGGGGCGTGGATTGAAACGGCATCGGCCAGACCGCTGCCAAGGGCCTCTATGTGTTCGCCCCCACACGGGGGCGTGGATTGAAACCCGCTCTACCCTACGCACGCCGCGGTGATCCCGTGCTCTCGCCCCCATGGGAATGTGAATTGAAAC

>NZ_CP054619|2|2|1275914-1276460|CRT
TGGGGCGTGGATTGAAAC	AAGGCGGTGATTACGTCAGAATCCTTCTGGGACCGTTGGTCCTACAC
AGGGTCGTGGATTGAAAC	TGCTGCGTCGTGGCTTGCGTCTGAGCCTCGCTGGGTTCGCTCCCACGC
AGAGGCGTGGATTGAAAC	GACCTTGAGGTCGACAACATGGACCTGCTCGAGGCGTTCGCCCCCAC
ACGGGGGTGGATTGAAAC	CAACTAGGCAATTTCGACGTTTGGACGTTGGAGAAGGTCACCCCCACGC
GGGGGCGTGGATTGAAAC	TACGACCTGAAGCACAAGGCCGACGAGACCTGGAGTTCGCCTCCACAT
GGAGGCGTGGATTGAAAC	GTTGAACGGGTCGAGAAGCTTGAAGACCTGTGCGGGTTCGCCTCCACGC
GGGGGCGTGGATTGAAAC	GGCATCGGCCAGACCGCTGCCAAGGGCCTCTATGTGTTCGCCCCCACAC
GGGGGCGTGGATTGAAAC	CCGCTCTACCCTACGCACGCCGCGGTGATCCCGTGCTCTCGCCCCCAT
GGGAATGTGAATTGAAAC

>NZ_CP054619|2|2|1276162-1276328|PILER-CR
AGGTCACCCCCACGCGGGGGCGTGGATTGAAACTA	CGACCTGAAGCACAAGGCCGACGAGACCTGG
AGTTCGCCTCCACATGGAGGCGTGGATTGAAACGT	TGAACGGGTCGAGAAGCTTGAAGACCTGTGCG
GGTTCGCCTCCACGCGGGGGCGTGGATTGAAACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054619.1\|WP_149198359.1\|1263747_1264044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198387
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP054619.1\|WP_149198372.1\|1279729_1280659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283041
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP054619.1\|WP_149198362.1\|1265997_1266285_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP054619.1\|WP_149198373.1\|1281381_1281831_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198360.1\|1264087_1264423_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP054619.1\|WP_149198370.1\|1279067_1279256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP054619.1\|WP_149198374.1\|1282008_1282431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521
NZ_CP054619.1\|WP_149198368.1\|1277724_1277982_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.4405e-47
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	1.78767e-09
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.53382e-63
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	gnl\|CDD\|198387	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs. This family includes a group of functionally uncharacterized proteins from bacteria and their eukaryotic homologs which are present only in metazoa. These proteins might have nuclease activities and possibly be engaged in DNA repair or recombination, since they share sequence homology with the catalytic GIY-YIG domain of bacterial UvrC DNA repair proteins. Distinct from their prokaryotic relatives, the eukaryotic homologs contain an N-terminal extension that includes the region of approximately 3-4 ankyrin repeats, unique motifs mediating protein-protein interactions. Some of eukaryotic homologs do have an additional LEM domain located between ankyrin repeats region and GIY-YIG domain. The LEM domain, found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The different domain composition of the eukaryotic homologs suggests that they might participate in interactions with multiple partners and implies important cellular function.	3.13554e-10
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	2.0826e-12
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	9.48585e-27
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.05467e-37
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.64404e-23
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	4.09409e-56
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.74778e-51
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	5.38834e-09
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	2.27179e-24

>NZ_CP054619.1|WP_174757264.1|1272352_1273519_+|type-I-CRISPR-associated-protein-Cas7
MTTDVLTEPVRLADIAYTEIPEVLLDPARRHDCLFLFDVENGNPNGDPDAENSPRTEGIHGHGIVTDGCLKSKLRNLIREYGGAETFIQPAIPLNNHIRDAVVAAGGNLAEVTLDEQDGDHDGLTDILNHIDSLDDFVVDGNKVTYTGAQAKKSHIDKALKGELPTDSPIWKAISSQKLGSRLESALKGKKSGVTDEVRQAAEVEMVRRFADVRYFGAVMSTGLNAGQRRGPVQIVPATSIDPIYPMEMAITRQAKTTAERLAKSRTEIGRRSMVTYALYRGHMFYNAPLGIQNGMTADDMRLLWESMMRMFTLDHAAGRAMMRMRGLYVWSHKSRYGDAPFDRLFDMVKVAKIVKSETEIPRSFEDYQINVGELEPNDRIVFTRLIG
>NZ_CP054619.1|WP_149198366.1|1270403_1272317_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MLPDLLSIASSGTGIFAAGRPGFSLRAADARVTVRSLGGLFIEPWPEIDARRKARVLAPDLRRSGKQVEGREGAIPFFDRADYTFGLTGEDGPVKADLLHRGYLRVLSEAAEETGSQRLRQALEALSDARAVSLAVAEAKSRFDLGQRSVVAVYDDEGPLFDDTDFTIFWQDRVSLEIVDAKASRQQCSVCGTADQPVVSKFPSEVVLTGQKCQITSFNAASFQSYGKEQTRQASICVRCASALPAAMQAMLQPGSGYSRVVYRHTPKSGASDPMKSLTAIFWVEPPPASALDGLDWEAAFADFDMEGTLSASIGLVETQDLQEGERTATPEPEQILSLLQGIADGADPRRAKAIDAAAFHVVLLAPNTGRLIVREHLRRNITPMLQSAGRFLRAARGFRFDEKDRVLVRRPLGVASLGRLLHQRGTESPTLVRSLLRTAMTEETPPVALRQIAVSRLVGMLVKGQRDDAVQDAATAALLLHLSYTNSRYRTMAESNEITEDQVDHMTSAAFHSGRLLAVMDAIQRTTDPKIPKTSAEKIVATAAAFPARAMVPLQKRTIAVYVPKVADKYPGLARLYGAALDATVRRAVECGGIPDHLDASQQSEFLAGFSLQRELMRREQEARRLRRENPTNDAK
>NZ_CP054619.1|WP_174757262.1|1269700_1270414_+|type-I-C-CRISPR-associated-protein-Cas5
MRDDDRWDFEVRVKGQRACFTMPMFGVERRTYPFPTPSAMRGLLEAVFWRPEFRYEISRVGIVKPGQEQAITRTELQARQSLRSLGTPAKRTLRTTSYLLDVEYLVQARILLHRHAEPGNTHRKYLEQLTRRLTRGAHFQTPYLGLREFAAEVSLSDGTGDRPSRYLNAEVGPVFFDQAFIPDGSEMSFKRKDADGVREVVGRTRPLFFDMRLVEGWVEVPRDLYDDIQALEARHAA
>NZ_CP054619.1|WP_149198364.1|1267308_1269636_-|DEAD/DEAH-box-helicase
MVDDPITLARGHSRNHRGGEHYLADHLSSVQLTAAEFAKWLHFRRSDGRGAEIASLVAGLIAIFHDAAKASEAFQRYLAAIDAGTTPVRTIHAGPSAVASWEWVLLAMMGARQGVSKAVASLHAERAFSLYEVLLPVEGHHAGLGAASTCVQRLEGLRTSPEAAEAAVAALRFLKATGLLPTRLPFFPPLEGTRRDMFIRMVSSAAFDADRLDTENHFRPHAKGLRSNWMSIREVAERFGQNQQELLARVEPMVQEGRVSRVVADARVELHRNAVDAAGEAGLYRMEAPTGSGKTRAYMAFASQCVLDHGFRRIIIALPFTSIIDQTAQTLKEILEAGGSPLAVLEHHSTADLGDDEWQGRTAYRLAEENWDAPVVITTFVQLFESLLANRPGRMRKLHNMARSVIVLDEVQALPVGLLDTTMDVLHSLVEDCGCIVLFSTATQPPYEAKMPSLRGMPVREITKRPHHLTKELRRVRYDLLGTPSVPLTVGDIAGMTLQRPQSLVVTNTRRDATAIFDIMADQPGKVESLYYLSSSLCPAHRKQVIATVAACLDAKAPIHLVSTQVIEAGVDLDFPWGARAFGPLGSIVQTAGRVNRNGMLKEAGNPVLGTLAVFHLEGGKLPPGEYTQAANILLRLLPNAPRLVGRDGEDMGLDLSDPDFMRRYYGALIEFGTDARGIQDLRRKLDFSEVAERYRLIPDDQVAVCIDWEGRGHAALAKLLKESSRVAFRQCQQYIVQIPLSKKQDVLDAGLADDTACGIMRWAGGYDGRLGILL
>NZ_CP054619.1|WP_149198363.1|1266309_1266693_-|hypothetical-protein
MVRKKSSLGVKPAAPKCPFSYITGPFYVYWLVDPRTNDTIYVGRGRGRRARSYYNMASNEKYLLPSHNGQLNQWISEIRSTGMEVGIFAKDCFSNKKMMQKLEKDLIKQHGRFDKGTGTLANRNNGG
>NZ_CP054619.1|WP_149198362.1|1265997_1266285_-|hypothetical-protein
MVALSKEWFDYHLTPAGWHHGTERLDGGTINEEPVPDGCVLTVRVHEEIGSIGGKLHNWVAVHWQHADTALVKELLIRHGQLPPHSGIETATVDW
>NZ_CP054619.1|WP_149198361.1|1264820_1265519_+|hypothetical-protein
MSGKLSFRERPEQQESSGVRSPAPSGSTVRVVLRLGGAVDHPVTLIQTLARCGLVLRKAHGVVTRLVAGEKLPVLLADAPEPAEVISTLERLGVAVGFPHPPVSIDVKAIRAKLGLIQRKFAARFRFNVDSVQNWEQSRYVPDPPTRILLKVIEQHPEAVEDVLGSRVADDMVVAGRPRLELAAEPMGWYGRPGVGEDTGRFNSGRVPREPAALPQLHWRRRATSGRSQRLR
>NZ_CP054619.1|WP_149198360.1|1264087_1264423_-|hypothetical-protein
MNRVVIVWAALVALLSGPAQAQLGPPQSKVQRPVCEVIQDASNLMDLQPKLSDALEQCGSESWVSVNLGIFSAADVAGLICRPGLPVVVDGGKLGCMGGVWSVNRRVVKTK
>NZ_CP054619.1|WP_149198359.1|1263747_1264044_+|hypothetical-protein
MNTQTAIVVSAAILGGSVLYGLAGRPPSNVGQFQMVKAGDTSVWVLDSATGSLQVCGYSTHTPTAERPAIKRCFMVERDRYLTDAEVGITPPEPPRGK
>NZ_CP054619.1|WP_174757260.1|1261446_1263069_+|hypothetical-protein
MEDKTENKNDVVAVLDDFRGRMTARDRKDPGMAQVILGSFTMARLTTDELDAVMKFLVDELGLTRSEVGVKIKRARVVEALGTYPRDLEGYVDAYSRRHDVRPTLGNWVRVSPRAGTKLDMHGSRFDIMTAEKLAQYPEDSEVLAFHATLAPTIIDERRLVDRLKMFAEDFGLGYSEAGIDRAWAEWVANYRTQTLYWLGHKLGVDLRGTEEEAQIQLEWDRFLAAILPEQPAAIADGGDNADQSPEVVRAVLGHFIWQVRRKVCGIPVDHHMMPVFIGPQGGGKSEMVKRLLSPLAEVRAWVDSDFAKLTDDRNTELLGNIPVHFLDEMSYASKSDIEVTKRKISAEDVTYRPLYGNTQRTIRNIATFIGCSNQELGHSVVDTTGNRRFFPIRVKARLDWNAVNSVNWLLLWWSVDIAAQSPIKAVLDRVRGVQEANRTRSQVEEWLDAEWADLMTTDHVTAWTPASKLYPLFRDFAQIAFRNPLELKDFRNEMRRLAGLPNGRVYHAIWTGGNHVFRLGQADMASGKPKLGLVQGCKP
>NZ_CP054619.1|WP_149198368.1|1277724_1277982_-|hypothetical-protein
MISEWNRHDLLVTRDRSEPLGSRYFAKVTRSAPSRRQTQADEYAGRVMPITAEIDRTGVTIVQGLADALNARRRSHPSTVRDVIL
>NZ_CP054619.1|WP_149198369.1|1278049_1278754_-|recombinase-family-protein
MRYVAYFRVSTRDQGRSGLGLDAQRAAVQRFLRDGDVVVGEYQDIETGKRDDREGLGQALRACRIYNAKLLIARLDRLSRNIAFITRLMSDGVQFVSVDNPAINELTAHILAAVAEAERKAISDRTRLALAAAKARGTKLGNPANLRGQDEGRRRGAATVAVQAAKRAADLQDVIAAIQADGVTSRRGIARELNRRGIRTARDREWSAGQVHVLLARLLENFPKLSTTEAVTAT
>NZ_CP054619.1|WP_149198370.1|1279067_1279256_-|hypothetical-protein
MVEVGQRFVLHAGRKTVWEVVGVTTTPDGLRHVQMVSVEPPGERKTLAETELERGRSFRHLG
>NZ_CP054619.1|WP_149198371.1|1279286_1279682_-|hypothetical-protein
MGLLGYDEFLPVLVAGLDCEFEPAQEAAEAALECYGDQAIAALDAGFDTLEGFQRLMAFGLASRLGGDAGVGLIAKHFTAFVDDDPNAISMAATVLDAEPLNALFKTKLGRNDPCPLGTGKKVKKCCCGGN
>NZ_CP054619.1|WP_149198372.1|1279729_1280659_-|hypothetical-protein
MASLLRHLPAERWAAHADALAERWPRWAGEPARFAAPLIAQYRPDTAAVLFEGFAASLVDAIEPDADKLLGVLDAVRHLGRDQAHAVLTAVVRVVEDSQRLADWQTAALADAALATRHPDRLEIVRQWLDRTAAEERTFHEALVRLGEWLFGDASRVGFVRDYALDYTQQAVAPRASPVFRPAIPPVEIDDALRGLRLDDARSATRLLQQHLEHPPGDEAPDRWDDFLALVQGGLPRPEGRPAKRVWPEVFLGGLLTTLRQPRLDLSPADQETIWMVVTADIDLPPGLEAALPRLQEVPREVMVAEAEP
>NZ_CP054619.1|WP_149198373.1|1281381_1281831_+|hypothetical-protein
MIAAAKNMAGHEDQALNLIRQVRPKVCLNRLIVGLADDPLEASGTLLRGMVGMKIKGDPKSAVVGIAFVVFELQIQRATMQSPVVRVGHAGTNKPSIPIDCETDFEFSEHPPLKRYCPVRDLFQGYRPRLVPADGCVQRAGLNPKGCWP
>NZ_CP054619.1|WP_149198374.1|1282008_1282431_-|hypothetical-protein
MTSSGPLDWLIDRYASRPAAIRKLIDLAIRQPVRWNADQEIRYRSGIIARLTAMMELAEDASVADKAVAFREMFTHADSLEVQRFLTYLIFLIIPDGGWPEPVVWDSAAGRPRSFHLDSQLEYAEKLVVTLLARRLRSES
>NZ_CP054619.1|WP_149198375.1|1282518_1284357_-|recombinase-family-protein
MTLAFSYIRMSTPEQLKGDSLRRQLERSRRLAEARGWTLDETFRDLGKSAYRGTHIESGAFGEFLERVRAGKVPTGSVLIVESLDRLSRETVPVALQTFLGIINAGLVLVTLDSEPPREFRADSANVTFDLMLSILELSRAHAESRRKSDLLKPAWENKRRQAREDKKPLTRRLPMWIRIVDGQFEIIPERAEVVREIFELSVAGIGREKLVKLLNGRGIPAPGGGEWGKSGISHILDTPAVIGRFQPSETYYENGRKLRRPVGDIIEGYFPPVIPVDLYNRAHAARQSRSLGYGGRTGWTFSNIFRGLCYCGACGGKMEYFNKGNNLEKGGRYFMCASVKRGSGCQERVTYRYVHFERAFLDNCHHFDFSRLNAAAASDLQHVRERIAELALEQTDLNKRYATILELAETNGLSDRIRTRVAELETALDLNAAEQDKLRVKEATLAHSGQSDTIRQLLEVRGRMETATGEDLYRIRAQLSAMIREFTVGIVFWNGIATVAVGNSGMATPFMALYMFNKAGKLLIRTGLEFGPSTDQHAVPVGDIGTGTPEELQERLRAVDATLKAVSALKARMEPTIPEAERETGMERFKARWGDMDPLPASASLVLEAPG
>NZ_CP054619.1|WP_174757266.1|1284355_1284745_+|aminoacyl-tRNA-hydrolase
MAATTVQVTLEQWGGIGQHVNKTETAVQLRFDVRRSPNLPDPVRYRLERLAGSRLTQDGVLILVADRYRSQMRNREDARERLIDLIREAAAPPPPPRRPTKPTKGSKERRLEGKAKRSEVKKMRGNVHD
>NZ_CP054619.1|WP_149198376.1|1284878_1286114_+|MFS-transporter
MSHPSAALPSPTSARLSVGFAWVGHSLMHIVSALFLTIVLALETEWKLSYDELIRLWTLGAFMIGLGAPLAGWLGDRWSSAGMIAVFYLMTGGGAVLAGLSDGPEMLMWSLALLGLGASIYHPVGMAWMMANAENRGKAMGWLGLFGTFGVATAAVVAGSLTQWLNWRMAFIIPGAICLVLGVVLALLMMSGVVQDRHADVKPQPKPSRGDVVRAFFVLSLTMVCAGLIFNAMQVVLPKLFEARLGGWLGTGTLGVGGLVTAVYLISALPQMVGGVLADRHSLKRVYMLCLLAQIPLMAAVAVLADVPLVAAAAFVVIASQTQIPAENMLLARYTPDKHRGLAFGAKYILSFGAGPLAVQLVAWVYERTGEFTMLYLTLSALAAIAFAAALLLPDDRRKAEPVAEPLPAAE

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Crispr_ID: NZ_CP054619_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054619_4

1277222-1277573

TypeI

Consensus_repeat	Method
GTTCGCCCCCACGCGGGGG	CRT

5 spacers

cas7b,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP054619_4

>merge|NZ_CP054619|4|1277222-1277573|CRT
GTTCGCCCCCACCAGGGGGTGTGGATTGAAACGACGGGTTCGCAGGGACCGGGACGACCGGCGTCGGTTCGCCCCCACGCGGGGGCATGGATTGAAACTCGTAGCGGCCCGGCTTGACCCGCCCGACCTTGCGGTTCGCCCCCACGCGGGGCGTGGATTGAAACATGCCCCGCTGGTGGGCGATGTCCGAGCGTGTGATGTTCGCCCCCACGCGAGGGCGTGGATTGAAACAAGGTCATCCTGGGCGATGACCCCGGCGGCACAGGTTCGCCCCAACGCGGGGGCGTGGATTGAAACGGCAACTGGGTCGCGGGCGACGAACGCCAGAAGGCCGTTCGCCTCCTCGCGGGGG

>NZ_CP054619|4|3|1277222-1277573|CRT
GTTCGCCCCCACCAGGGGG	TGTGGATTGAAACGACGGGTTCGCAGGGACCGGGACGACCGGCGTCG
GTTCGCCCCCACGCGGGGG	CATGGATTGAAACTCGTAGCGGCCCGGCTTGACCCGCCCGACCTTGCG
GTTCGCCCCCACGCGGGGC	GTGGATTGAAACATGCCCCGCTGGTGGGCGATGTCCGAGCGTGTGAT
GTTCGCCCCCACGCGAGGG	CGTGGATTGAAACAAGGTCATCCTGGGCGATGACCCCGGCGGCACAG
GTTCGCCCCAACGCGGGGG	CGTGGATTGAAACGGCAACTGGGTCGCGGGCGACGAACGCCAGAAGGCC
GTTCGCCTCCTCGCGGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054619.1\|WP_149198359.1\|1263747_1264044_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198387
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP054619.1\|WP_149198372.1\|1279729_1280659_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283041
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP054619.1\|WP_149198362.1\|1265997_1266285_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225495
NZ_CP054619.1\|WP_149198373.1\|1281381_1281831_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198360.1\|1264087_1264423_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341031
NZ_CP054619.1\|WP_149198370.1\|1279067_1279256_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP054619.1\|WP_149198374.1\|1282008_1282431_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|181730
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235521
NZ_CP054619.1\|WP_149198368.1\|1277724_1277982_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054619.1\|WP_149198364.1\|1267308_1269636_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.4405e-47
NZ_CP054619.1\|WP_174757260.1\|1261446_1263069_+\|hypothetical-protein	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	1.78767e-09
NZ_CP054619.1\|WP_174757264.1\|1272352_1273519_+\|type-I-CRISPR-associated-protein-Cas7	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	7.53382e-63
NZ_CP054619.1\|WP_149198363.1\|1266309_1266693_-\|hypothetical-protein	gnl\|CDD\|198387	cd10440, GIY-YIG_COG3680, GIY-YIG domain of uncharacterized proteins from bacteria and their eukaryotic homologs. This family includes a group of functionally uncharacterized proteins from bacteria and their eukaryotic homologs which are present only in metazoa. These proteins might have nuclease activities and possibly be engaged in DNA repair or recombination, since they share sequence homology with the catalytic GIY-YIG domain of bacterial UvrC DNA repair proteins. Distinct from their prokaryotic relatives, the eukaryotic homologs contain an N-terminal extension that includes the region of approximately 3-4 ankyrin repeats, unique motifs mediating protein-protein interactions. Some of eukaryotic homologs do have an additional LEM domain located between ankyrin repeats region and GIY-YIG domain. The LEM domain, found in inner nuclear membrane proteins, may be involved in protein- or DNA-binding. The different domain composition of the eukaryotic homologs suggests that they might participate in interactions with multiple partners and implies important cellular function.	3.13554e-10
NZ_CP054619.1\|WP_149198361.1\|1264820_1265519_+\|hypothetical-protein	gnl\|CDD\|225495	COG2944, COG2944, Predicted transcriptional regulator [Transcription].	2.0826e-12
NZ_CP054619.1\|WP_149198375.1\|1282518_1284357_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	9.48585e-27
NZ_CP054619.1\|WP_149198366.1\|1270403_1272317_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	5.05467e-37
NZ_CP054619.1\|WP_149198376.1\|1284878_1286114_+\|MFS-transporter	gnl\|CDD\|341031	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters. Fosmidomycin resistance protein (FsR) confers resistance against fosmidomycin. It shows sequence similarity with the bacterial drug-export proteins that mediate resistance to tetracycline and chloramphenicol. This FsR family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.64404e-23
NZ_CP054619.1\|WP_174757266.1\|1284355_1284745_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|181730	PRK09256, PRK09256, aminoacyl-tRNA hydrolase.	4.09409e-56
NZ_CP054619.1\|WP_174757262.1\|1269700_1270414_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.74778e-51
NZ_CP054619.1\|WP_149198371.1\|1279286_1279682_-\|hypothetical-protein	gnl\|CDD\|235521	PRK05590, PRK05590, hypothetical protein; Provisional.	5.38834e-09
NZ_CP054619.1\|WP_149198369.1\|1278049_1278754_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	2.27179e-24

>NZ_CP054619.1|WP_174757264.1|1272352_1273519_+|type-I-CRISPR-associated-protein-Cas7
MTTDVLTEPVRLADIAYTEIPEVLLDPARRHDCLFLFDVENGNPNGDPDAENSPRTEGIHGHGIVTDGCLKSKLRNLIREYGGAETFIQPAIPLNNHIRDAVVAAGGNLAEVTLDEQDGDHDGLTDILNHIDSLDDFVVDGNKVTYTGAQAKKSHIDKALKGELPTDSPIWKAISSQKLGSRLESALKGKKSGVTDEVRQAAEVEMVRRFADVRYFGAVMSTGLNAGQRRGPVQIVPATSIDPIYPMEMAITRQAKTTAERLAKSRTEIGRRSMVTYALYRGHMFYNAPLGIQNGMTADDMRLLWESMMRMFTLDHAAGRAMMRMRGLYVWSHKSRYGDAPFDRLFDMVKVAKIVKSETEIPRSFEDYQINVGELEPNDRIVFTRLIG
>NZ_CP054619.1|WP_149198366.1|1270403_1272317_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MLPDLLSIASSGTGIFAAGRPGFSLRAADARVTVRSLGGLFIEPWPEIDARRKARVLAPDLRRSGKQVEGREGAIPFFDRADYTFGLTGEDGPVKADLLHRGYLRVLSEAAEETGSQRLRQALEALSDARAVSLAVAEAKSRFDLGQRSVVAVYDDEGPLFDDTDFTIFWQDRVSLEIVDAKASRQQCSVCGTADQPVVSKFPSEVVLTGQKCQITSFNAASFQSYGKEQTRQASICVRCASALPAAMQAMLQPGSGYSRVVYRHTPKSGASDPMKSLTAIFWVEPPPASALDGLDWEAAFADFDMEGTLSASIGLVETQDLQEGERTATPEPEQILSLLQGIADGADPRRAKAIDAAAFHVVLLAPNTGRLIVREHLRRNITPMLQSAGRFLRAARGFRFDEKDRVLVRRPLGVASLGRLLHQRGTESPTLVRSLLRTAMTEETPPVALRQIAVSRLVGMLVKGQRDDAVQDAATAALLLHLSYTNSRYRTMAESNEITEDQVDHMTSAAFHSGRLLAVMDAIQRTTDPKIPKTSAEKIVATAAAFPARAMVPLQKRTIAVYVPKVADKYPGLARLYGAALDATVRRAVECGGIPDHLDASQQSEFLAGFSLQRELMRREQEARRLRRENPTNDAK
>NZ_CP054619.1|WP_174757262.1|1269700_1270414_+|type-I-C-CRISPR-associated-protein-Cas5
MRDDDRWDFEVRVKGQRACFTMPMFGVERRTYPFPTPSAMRGLLEAVFWRPEFRYEISRVGIVKPGQEQAITRTELQARQSLRSLGTPAKRTLRTTSYLLDVEYLVQARILLHRHAEPGNTHRKYLEQLTRRLTRGAHFQTPYLGLREFAAEVSLSDGTGDRPSRYLNAEVGPVFFDQAFIPDGSEMSFKRKDADGVREVVGRTRPLFFDMRLVEGWVEVPRDLYDDIQALEARHAA
>NZ_CP054619.1|WP_149198364.1|1267308_1269636_-|DEAD/DEAH-box-helicase
MVDDPITLARGHSRNHRGGEHYLADHLSSVQLTAAEFAKWLHFRRSDGRGAEIASLVAGLIAIFHDAAKASEAFQRYLAAIDAGTTPVRTIHAGPSAVASWEWVLLAMMGARQGVSKAVASLHAERAFSLYEVLLPVEGHHAGLGAASTCVQRLEGLRTSPEAAEAAVAALRFLKATGLLPTRLPFFPPLEGTRRDMFIRMVSSAAFDADRLDTENHFRPHAKGLRSNWMSIREVAERFGQNQQELLARVEPMVQEGRVSRVVADARVELHRNAVDAAGEAGLYRMEAPTGSGKTRAYMAFASQCVLDHGFRRIIIALPFTSIIDQTAQTLKEILEAGGSPLAVLEHHSTADLGDDEWQGRTAYRLAEENWDAPVVITTFVQLFESLLANRPGRMRKLHNMARSVIVLDEVQALPVGLLDTTMDVLHSLVEDCGCIVLFSTATQPPYEAKMPSLRGMPVREITKRPHHLTKELRRVRYDLLGTPSVPLTVGDIAGMTLQRPQSLVVTNTRRDATAIFDIMADQPGKVESLYYLSSSLCPAHRKQVIATVAACLDAKAPIHLVSTQVIEAGVDLDFPWGARAFGPLGSIVQTAGRVNRNGMLKEAGNPVLGTLAVFHLEGGKLPPGEYTQAANILLRLLPNAPRLVGRDGEDMGLDLSDPDFMRRYYGALIEFGTDARGIQDLRRKLDFSEVAERYRLIPDDQVAVCIDWEGRGHAALAKLLKESSRVAFRQCQQYIVQIPLSKKQDVLDAGLADDTACGIMRWAGGYDGRLGILL
>NZ_CP054619.1|WP_149198363.1|1266309_1266693_-|hypothetical-protein
MVRKKSSLGVKPAAPKCPFSYITGPFYVYWLVDPRTNDTIYVGRGRGRRARSYYNMASNEKYLLPSHNGQLNQWISEIRSTGMEVGIFAKDCFSNKKMMQKLEKDLIKQHGRFDKGTGTLANRNNGG
>NZ_CP054619.1|WP_149198362.1|1265997_1266285_-|hypothetical-protein
MVALSKEWFDYHLTPAGWHHGTERLDGGTINEEPVPDGCVLTVRVHEEIGSIGGKLHNWVAVHWQHADTALVKELLIRHGQLPPHSGIETATVDW
>NZ_CP054619.1|WP_149198361.1|1264820_1265519_+|hypothetical-protein
MSGKLSFRERPEQQESSGVRSPAPSGSTVRVVLRLGGAVDHPVTLIQTLARCGLVLRKAHGVVTRLVAGEKLPVLLADAPEPAEVISTLERLGVAVGFPHPPVSIDVKAIRAKLGLIQRKFAARFRFNVDSVQNWEQSRYVPDPPTRILLKVIEQHPEAVEDVLGSRVADDMVVAGRPRLELAAEPMGWYGRPGVGEDTGRFNSGRVPREPAALPQLHWRRRATSGRSQRLR
>NZ_CP054619.1|WP_149198360.1|1264087_1264423_-|hypothetical-protein
MNRVVIVWAALVALLSGPAQAQLGPPQSKVQRPVCEVIQDASNLMDLQPKLSDALEQCGSESWVSVNLGIFSAADVAGLICRPGLPVVVDGGKLGCMGGVWSVNRRVVKTK
>NZ_CP054619.1|WP_149198359.1|1263747_1264044_+|hypothetical-protein
MNTQTAIVVSAAILGGSVLYGLAGRPPSNVGQFQMVKAGDTSVWVLDSATGSLQVCGYSTHTPTAERPAIKRCFMVERDRYLTDAEVGITPPEPPRGK
>NZ_CP054619.1|WP_174757260.1|1261446_1263069_+|hypothetical-protein
MEDKTENKNDVVAVLDDFRGRMTARDRKDPGMAQVILGSFTMARLTTDELDAVMKFLVDELGLTRSEVGVKIKRARVVEALGTYPRDLEGYVDAYSRRHDVRPTLGNWVRVSPRAGTKLDMHGSRFDIMTAEKLAQYPEDSEVLAFHATLAPTIIDERRLVDRLKMFAEDFGLGYSEAGIDRAWAEWVANYRTQTLYWLGHKLGVDLRGTEEEAQIQLEWDRFLAAILPEQPAAIADGGDNADQSPEVVRAVLGHFIWQVRRKVCGIPVDHHMMPVFIGPQGGGKSEMVKRLLSPLAEVRAWVDSDFAKLTDDRNTELLGNIPVHFLDEMSYASKSDIEVTKRKISAEDVTYRPLYGNTQRTIRNIATFIGCSNQELGHSVVDTTGNRRFFPIRVKARLDWNAVNSVNWLLLWWSVDIAAQSPIKAVLDRVRGVQEANRTRSQVEEWLDAEWADLMTTDHVTAWTPASKLYPLFRDFAQIAFRNPLELKDFRNEMRRLAGLPNGRVYHAIWTGGNHVFRLGQADMASGKPKLGLVQGCKP
>NZ_CP054619.1|WP_149198368.1|1277724_1277982_-|hypothetical-protein
MISEWNRHDLLVTRDRSEPLGSRYFAKVTRSAPSRRQTQADEYAGRVMPITAEIDRTGVTIVQGLADALNARRRSHPSTVRDVIL
>NZ_CP054619.1|WP_149198369.1|1278049_1278754_-|recombinase-family-protein
MRYVAYFRVSTRDQGRSGLGLDAQRAAVQRFLRDGDVVVGEYQDIETGKRDDREGLGQALRACRIYNAKLLIARLDRLSRNIAFITRLMSDGVQFVSVDNPAINELTAHILAAVAEAERKAISDRTRLALAAAKARGTKLGNPANLRGQDEGRRRGAATVAVQAAKRAADLQDVIAAIQADGVTSRRGIARELNRRGIRTARDREWSAGQVHVLLARLLENFPKLSTTEAVTAT
>NZ_CP054619.1|WP_149198370.1|1279067_1279256_-|hypothetical-protein
MVEVGQRFVLHAGRKTVWEVVGVTTTPDGLRHVQMVSVEPPGERKTLAETELERGRSFRHLG
>NZ_CP054619.1|WP_149198371.1|1279286_1279682_-|hypothetical-protein
MGLLGYDEFLPVLVAGLDCEFEPAQEAAEAALECYGDQAIAALDAGFDTLEGFQRLMAFGLASRLGGDAGVGLIAKHFTAFVDDDPNAISMAATVLDAEPLNALFKTKLGRNDPCPLGTGKKVKKCCCGGN
>NZ_CP054619.1|WP_149198372.1|1279729_1280659_-|hypothetical-protein
MASLLRHLPAERWAAHADALAERWPRWAGEPARFAAPLIAQYRPDTAAVLFEGFAASLVDAIEPDADKLLGVLDAVRHLGRDQAHAVLTAVVRVVEDSQRLADWQTAALADAALATRHPDRLEIVRQWLDRTAAEERTFHEALVRLGEWLFGDASRVGFVRDYALDYTQQAVAPRASPVFRPAIPPVEIDDALRGLRLDDARSATRLLQQHLEHPPGDEAPDRWDDFLALVQGGLPRPEGRPAKRVWPEVFLGGLLTTLRQPRLDLSPADQETIWMVVTADIDLPPGLEAALPRLQEVPREVMVAEAEP
>NZ_CP054619.1|WP_149198373.1|1281381_1281831_+|hypothetical-protein
MIAAAKNMAGHEDQALNLIRQVRPKVCLNRLIVGLADDPLEASGTLLRGMVGMKIKGDPKSAVVGIAFVVFELQIQRATMQSPVVRVGHAGTNKPSIPIDCETDFEFSEHPPLKRYCPVRDLFQGYRPRLVPADGCVQRAGLNPKGCWP
>NZ_CP054619.1|WP_149198374.1|1282008_1282431_-|hypothetical-protein
MTSSGPLDWLIDRYASRPAAIRKLIDLAIRQPVRWNADQEIRYRSGIIARLTAMMELAEDASVADKAVAFREMFTHADSLEVQRFLTYLIFLIIPDGGWPEPVVWDSAAGRPRSFHLDSQLEYAEKLVVTLLARRLRSES
>NZ_CP054619.1|WP_149198375.1|1282518_1284357_-|recombinase-family-protein
MTLAFSYIRMSTPEQLKGDSLRRQLERSRRLAEARGWTLDETFRDLGKSAYRGTHIESGAFGEFLERVRAGKVPTGSVLIVESLDRLSRETVPVALQTFLGIINAGLVLVTLDSEPPREFRADSANVTFDLMLSILELSRAHAESRRKSDLLKPAWENKRRQAREDKKPLTRRLPMWIRIVDGQFEIIPERAEVVREIFELSVAGIGREKLVKLLNGRGIPAPGGGEWGKSGISHILDTPAVIGRFQPSETYYENGRKLRRPVGDIIEGYFPPVIPVDLYNRAHAARQSRSLGYGGRTGWTFSNIFRGLCYCGACGGKMEYFNKGNNLEKGGRYFMCASVKRGSGCQERVTYRYVHFERAFLDNCHHFDFSRLNAAAASDLQHVRERIAELALEQTDLNKRYATILELAETNGLSDRIRTRVAELETALDLNAAEQDKLRVKEATLAHSGQSDTIRQLLEVRGRMETATGEDLYRIRAQLSAMIREFTVGIVFWNGIATVAVGNSGMATPFMALYMFNKAGKLLIRTGLEFGPSTDQHAVPVGDIGTGTPEELQERLRAVDATLKAVSALKARMEPTIPEAERETGMERFKARWGDMDPLPASASLVLEAPG
>NZ_CP054619.1|WP_174757266.1|1284355_1284745_+|aminoacyl-tRNA-hydrolase
MAATTVQVTLEQWGGIGQHVNKTETAVQLRFDVRRSPNLPDPVRYRLERLAGSRLTQDGVLILVADRYRSQMRNREDARERLIDLIREAAAPPPPPRRPTKPTKGSKERRLEGKAKRSEVKKMRGNVHD
>NZ_CP054619.1|WP_149198376.1|1284878_1286114_+|MFS-transporter
MSHPSAALPSPTSARLSVGFAWVGHSLMHIVSALFLTIVLALETEWKLSYDELIRLWTLGAFMIGLGAPLAGWLGDRWSSAGMIAVFYLMTGGGAVLAGLSDGPEMLMWSLALLGLGASIYHPVGMAWMMANAENRGKAMGWLGLFGTFGVATAAVVAGSLTQWLNWRMAFIIPGAICLVLGVVLALLMMSGVVQDRHADVKPQPKPSRGDVVRAFFVLSLTMVCAGLIFNAMQVVLPKLFEARLGGWLGTGTLGVGGLVTAVYLISALPQMVGGVLADRHSLKRVYMLCLLAQIPLMAAVAVLADVPLVAAAAFVVIASQTQIPAENMLLARYTPDKHRGLAFGAKYILSFGAGPLAVQLVAWVYERTGEFTMLYLTLSALAAIAFAAALLLPDDRRKAEPVAEPLPAAE

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Crispr_ID: NZ_CP054619_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054619_5

2269490-2269587

Orphan

Consensus_repeat	Method
GCGGCGGAAGCCGGGCGCAAGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054619_5

>merge|NZ_CP054619|5|2269490-2269587|CRISPRCasFinder
GCGGCGGAAGCCGGGCGCAAGGGCGGGCGTAGCGTGCCCGCCTCCTCGCGCAGCTTCTCCAAGAACCCCTCGCTGGCGGCGGAAGCCGGCCGCAAGGG

>NZ_CP054619|5|2|2269490-2269587|CRISPRCasFinder
GCGGCGGAAGCCGGGCGCAAGGG	CGGGCGTAGCGTGCCCGCCTCCTCGCGCAGCTTCTCCAAGAACCCCTCGCTG
GCGGCGGAAGCCGGCCGCAAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054619.1\|WP_149197399.1\|2268317_2269199_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP054619.1\|WP_149197694.1\|2254727_2255759_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|226612
NZ_CP054619.1\|WP_149197695.1\|2259797_2263343_-\|type-I-restriction-modification-system-endonuclease	unknown	unknown	gnl\|CDD\|236912
NZ_CP054619.1\|WP_174757326.1\|2255834_2257292_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341135
NZ_CP054619.1\|WP_149197398.1\|2267253_2268114_-\|pyridoxal-kinase-PdxY	unknown	unknown	gnl\|CDD\|235592
NZ_CP054619.1\|WP_149197397.1\|2264989_2267197_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP054619.1\|WP_174757328.1\|2258778_2259783_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_109075248.1\|2270934_2271546_-\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP054619.1\|WP_149197402.1\|2275121_2275325_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149197405.1\|2276908_2278180_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
NZ_CP054619.1\|WP_149197400.1\|2269747_2270863_-\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_CP054619.1\|WP_149197406.1\|2278202_2279519_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP054619.1\|WP_149197401.1\|2274640_2275069_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_CP054619.1\|WP_149197697.1\|2273666_2274641_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|275035
NZ_CP054619.1\|WP_149197403.1\|2275340_2275943_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149197696.1\|2271847_2273512_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054619.1\|WP_149197404.1\|2276060_2276912_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP054619.1\|WP_149197396.1\|2263537_2264710_-\|cell-division-protein-ZapE	unknown	unknown	gnl\|CDD\|224402
NZ_CP054619.1\|WP_149197394.1\|2257330_2258782_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NZ_CP054619.1\|WP_149197392.1\|2253905_2254613_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054619.1\|WP_149197399.1\|2268317_2269199_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	4.42429e-84
NZ_CP054619.1\|WP_149197694.1\|2254727_2255759_-\|restriction-endonuclease	gnl\|CDD\|226612	COG4127, COG4127, Uncharacterized conserved protein [Function unknown].	9.57227e-66
NZ_CP054619.1\|WP_149197695.1\|2259797_2263343_-\|type-I-restriction-modification-system-endonuclease	gnl\|CDD\|236912	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional.	0
NZ_CP054619.1\|WP_174757326.1\|2255834_2257292_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341135	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2. This model contains Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2 and similar TRD-CR's. S.SonII recognizes 5'... GTCANNNNNNRTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. S.SonII TRD1-CR1 does not belong to this subfamily.	3.69944e-56
NZ_CP054619.1\|WP_149197398.1\|2267253_2268114_-\|pyridoxal-kinase-PdxY	gnl\|CDD\|235592	PRK05756, PRK05756, pyridoxal kinase PdxY.	2.13166e-163
NZ_CP054619.1\|WP_149197397.1\|2264989_2267197_+\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	2.35701e-52
NZ_CP054619.1\|WP_109075248.1\|2270934_2271546_-\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.47571e-142
NZ_CP054619.1\|WP_149197400.1\|2269747_2270863_-\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_CP054619.1\|WP_149197406.1\|2278202_2279519_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_CP054619.1\|WP_149197401.1\|2274640_2275069_+\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.00697e-15
NZ_CP054619.1\|WP_149197697.1\|2273666_2274641_+\|glycosyltransferase	gnl\|CDD\|275035	TIGR04182, glyco_TIGR04182, glycosyltransferase, TIGR04182 family. Members of this family are glycosyltransferases restricted to the archaea. All but two members are from species with the PGF-CTERM/archaeosortase A system, a proposed maturation system for exported, glycosylated proteins as are found often in S-layers.	3.63121e-60
NZ_CP054619.1\|WP_149197405.1\|2276908_2278180_+\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	1.68142e-176
NZ_CP054619.1\|WP_149197396.1\|2263537_2264710_-\|cell-division-protein-ZapE	gnl\|CDD\|224402	COG1485, COG1485, Predicted ATPase [General function prediction only].	5.52718e-155
NZ_CP054619.1\|WP_149197394.1\|2257330_2258782_-\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	2.8897e-83
NZ_CP054619.1\|WP_149197404.1\|2276060_2276912_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	3.25555e-137

>NZ_CP054619.1|WP_149197399.1|2268317_2269199_+|CoA-ester-lyase
MATTVRPRRSVLYMPGSNARALEKGRSLPADGLILDLEDAVAPDAKAMARDTIATALSAGGYGGRELIVRVNGLNTPWGYDDLCMAAASGADAVLLPKVESADAVRQAEAVLRAAGAPAGQTIWCMMETPLGILNAKEIAGASPAVGALVLGTSDLAKDLHAAHTAQRLPMITSLGLCLLAARAYGLAVLDGVHLDLNDDEGFAASCRQGRELGFDGKTLIHPKTIAACNAAFAPDAEEIAQAHRIIAAHAEAAAAGKGVVLVDGKLVENLHVENARRLVTLAEAIAKLQAPG
>NZ_CP054619.1|WP_149197398.1|2267253_2268114_-|pyridoxal-kinase-PdxY
MKSVLTIQSHVAYGYVGNRAAVFPLQRLGIDATAVNTVQFSNHTGYGAWTGQVFTAEHIADIVDGIAARGVLPAQDAVLSGYMGAVELGQVIVETAARVKGANPNAIYCCDPVMGDVGRGFFVRPGLPEFIRDHAVPAADLMTPNQFELEYLTDRKVETLDDALGATAALRARGPRLVLVTSLTRSDADPDSIEMLADGADGSWLVSTPRLTFDPPPNGSGDAVAALFLAHYLTAFDPADALEKAAAAIFAIFETTKRMGTRELQLIAAQDDFVNPPRRFTATRIR
>NZ_CP054619.1|WP_149197397.1|2264989_2267197_+|PAS-domain-S-box-protein
MPVPGSASPPLPRSTAGLAQALRGRLGSVRFLMTASGLAFILVVNALIGYGMLLGRREALDAGERATRDLARMLESQTLRTAFSVDQLLRDLAFALDTLPDGTRRGSPAIHDHLRERRDSFAELADLVVVGADGLALHHSAEAPLPTVTLSDRAYFAGPRDGAGQGLHVGAPIASRVRTGTRIIPFSRRWTDRNGGFRGALVAMVDPNRLAATLESRDIDRKGSVILALADGTVLLDRPPGHDAPARVTDWPAVWQALAAHDEATIRDVMPGSDAAGPQPGVDSLVSVRRVQGYPFVIVATLPVGAALAEWRRDTAAWTAIGTVMTIAIALLTAFVVRQHARREEDQARLARASRRIRGILDSMLDAVVTFDSAGRIVTFNRAAEMMFGVPEREMIGQPIEALIPDARGGANDRDLTALRRDGHAFPVGFTVSDLRLGGSPCAAASYPASVGALRPDEPRIYVGVIRDMTRRKQQEAELIASKTQAELGNRAKSEFLANMSHELRTPLNAIIGFAEVLDSEFFGAVNERQKSCIADIHDSGRHLLDIVNAVLDMSKLESGQFELCEEAVEAHEAVGQCLMMVRDRAAAGGVAIHNEVTAAVATLWVDRRAFKQVILNLLSNAVKFTPGGGSITITAGLDGDGGFALTVADTGIGIPHDFMADLFQPFRQAENAANRRYEGTGLGLSISKNFIDLHGGTLTCRSAPGAGTAMTVWLPAERVIDRAIKMDSHAAPAA
>NZ_CP054619.1|WP_149197396.1|2263537_2264710_-|cell-division-protein-ZapE
MTDGPLSLYRARRGSGTLRPDPDQELAAEKFQSLYQALKGYQPQSAGDDKPAGGGWLERFGLGRRRATPPPPDIASTAPQGLYIYGSVGRGKSMLMDLFYETAPVDKKRRVHFHEFMLEIHQRIHDHRQSGKGKGDGPDEALPELARALADEAWLLCFDEFHVTNIVDAMILGRLFTNLFDLGVVVVATSNWPPDMLYKDGLQRELFLPFIALLKEKLDILSLDGPTDYRLDRLKGVPIYHHPLGAASDAALAKAFSDLTGGAAGEPCHLTVQGRRVEIARAAKCVAWVDFWDLCGKPLGAADYLAIATHFHTVLIGHVPTMKDELRNEAKRFMTLIDALYEHKVNVVIAAEGPPERLYPEGTHAFEFERTVSRLMEMQSEDYLQRQHLT
>NZ_CP054619.1|WP_149197695.1|2259797_2263343_-|type-I-restriction-modification-system-endonuclease
MSRSANFSFLAKHSVQLERLGALGERFFADDANTAILKMRQFAELLAQLTAAKLGMWTSPEETQDQLLRRLRDRGALPREVGDLFHYIRKTGNAANHDLGGDQATALSCLKHGRTLGVWFHRTVTGDRAFNPGPFVPPRDPRAESAAMKAELDRLRGELQAQQSAHERMAAEAQAEAERRLTAEERAAKAEADRLEWERLAQQVEADRARLEAELLTSVQALAAAMPAHAIQQTVELAQEVGQGIDLDERETRRLIDAQLREAGWEADSETLSYAAGTRPQKGRNLAIAEWPTADGRADYALFVGLTIVGMVEAKRRNTNASEYIERAARYSRGYVRRADEVPPAEGPWGEGDALFPVPFLFSTNGRPFLRQFEELSGVWFRDARHPHNHAKALDGWYTPAGLLEALRNDPRAAQDRLARDPFGYNFPLRDYQERAIRAVEAAIGAGRRDILVAMATGTGKTKTCIALVYRLLKAQRFRRILFLVDRTALGEQAGNAFKETRMEQQQVFADIFQVKELGDIVPDAETKLHIATVQSLVKRILGSDAPPPIDEYDCIVVDECHRGYLLDREMGDEELSFRDQGDYISKYRRVLDRFDAVRIGLTATPALHTVDIFGEPVIHYTYQEAVIDGWLVDHEPPIRAHTALSQEGIHWDAGAAVDVLDTRTGQLDLIHLPDEVRYDVQDFNRRVLTRDFNRVIAEWLAGHIDPSLPGKTLVFCATDLHAETVVGALRAAFADRYGGIDNDAVAKITGRSDDPMRQIRRFKNEELPKVAVTVDLLTTGIDVPEIVNLVFIRRVNSRILYEQMIGRGTRLCEDLFGPGRHKTAFRIFDAVGIYAAMEVMSQMRPVVTNPNITFATLMEELAEATRTPLPTQEPPPPALPLTGFAEEGQAPFLGPDDVPAPAPEDPQAAERRRQQARWLVGQIVAKLHRKRRRLTEAGKRRFRDLAGTDSETFVRRLRDAAPEEAARILIDHRALMDLLDTRIGDDPIHVPLYDGTDEFRHEETGYGANITRPEDYIASFRRYLDENMNRVPALNAVANAPRELTRAQLREVRLLLERDGFGEAELRAAFRDMDNADIAASVIGYIRRAALGDALVPYDERVDRAMRRVLSSRPWTKAQRDWLERIARHLKKEIVIDRDTLDQGEFRQQGGGFSRLDRVFEGNLGELIQVIRSEIWDSAA
>NZ_CP054619.1|WP_174757328.1|2258778_2259783_-|hypothetical-protein
MMSSESNALLGILTSKPSKQIIFMILVLLGFYGVVNGGAFSRSDNHFIVISVLSLVSAGFGLAGIFSSLIKESTLSRSNNSSIYIENNYAELSRDLEEIKVAIKEIEANNVTIQAGDGENLLEIIKKSFESTFSAESRDNVENAKKKEMVDVCVLPLQNASRRLAFEVNRSAGRTSTNLIFGSLVAIIGIFIIGSAVFGGPDMTDLVSRDSTKITPEITIIIAFLPKTVLGIFVEVVAFFFLKLYRRGFDEIRYFQNEISNLDALASALSASLMSGNSDLVKSVAEKIASIERNFVIEKGQSTIDLRREEMHVEGDRQMVESIKGIINSIRNGK
>NZ_CP054619.1|WP_149197394.1|2257330_2258782_-|N-6-DNA-methylase
MNATNDIVSKLWGLCHILRDDGITYHQYVTELTYLIFLKMAEETGAEEQLPPGYRWGDVRGRQGVEQLTFYKEMLIHLGTYGSAQVQSIFQNAQTSLRQPRILKALVEAIEGMDWYSARQEGLGDMYESLLERNATEKKSGAGQYFTPRPLIDSMVALVKPQPGEYVQDPAAGTGGFLIAADRWVKAHTNDLWDLSESEQYFQRHHAFVGMELVPDAHRLGLMNLMLHDVTGDLQLGDALSEQGARLPKVNVMLTNPPFGTKKGGGLPSRDDFTYPTSNKQLAFLQHIYRGLKPGGRAVVVLPDNVLFEDNAGRDIRRDLMDKCDLHTILRLPTGIFYSQGVKTNVLFFTRGRSDKGNTGEVWVYDMRSNMPQFGKTRPLTREHFAAFETAYGADPLGKAPRVDEGEQGRFRRFTRDQIAARGDNLDLTWLRDESAEAELPEPDVIAADIIDTLRVALEEMEALADLLGGDEEADGAVAEAAE
>NZ_CP054619.1|WP_174757326.1|2255834_2257292_-|restriction-endonuclease-subunit-S
MSTICDKITDGTHQSPKFEADGIPFLVISNIIRGKIEWQAVKKWISHDTYAALTARVRPERGDVLYSAVGSYGTAVAVDDDRPFAFQRHIAHIKPNSKIVDAEFLARWLNSPEARKRADAVARGVAQKTVTLGNLAEFEVPLAPLPEQRRIVEKIEALVTRSRRAREALDTLPTLIDRYRQSILAAAFRGDLTADWRAETIGTDVEGELRHLAEKRSARWPEFGRGPCRAPLAVEDPLPVPSGWAVTTLDALLVGIQSGKNFRCEERPPADDEAGVIKISAVTWGKFDQDESKTVTDRALLDPDARIAEGDFLFSRANTIELVGACVIVDEFNKELYLTDKVLRFIFASDDVKRWVLWFLRSPEGRRQIEARSSGNQMSMRNIGQDSIRRLSIPLPSKAEIAAILAVLERRLAAIESLKRMAGEQRGRLATLDQSILAKAFRGELVPQDPNDEPASVLLERIRAERAAAGPAPRRGRRPKVGGGG
>NZ_CP054619.1|WP_149197694.1|2254727_2255759_-|restriction-endonuclease
MVRAGKRGALIDRFRTAGRVAIGWAELGSLAAVADRPAMVALVRTRWPDWNVYEVGNNAGQLHRFRSDIQVGDRVISYDPDGRVYHVGTVTGPYAHEPTFDPDYPNVRPVTWGGSVPRDVLGVSAKNSLGSVTTVFQVPAETAAEIDTALAGPDAPAAKQAGGAVQDGADLDVVTIADPTAEAAAEQDLFEDLEAKALEFIKDRLVKLSPRDMELFVAGLLRAMGYKTRVSPVGPDRGRDIFASPDGLGLEDPRIFVEVKHRSGPIGAPSVRSFLGGRRPGDRGLYVSTGGFARDAKYEADRAPIPLSLLDLDDLVALALEHYDGLDVDSKRLLPLKRLYWPA
>NZ_CP054619.1|WP_149197392.1|2253905_2254613_-|hypothetical-protein
MATRPDDQAAGGGSHDQQGRAWDKVIAGCEAVVAAAKGESLTAVEKDMMAKGVGEAINAYRTSQEDRSAHDRKRLTEVAELIKKLLPLLCEMQNSMALHRVELAERSQAEDDDSAADDVSAPSRSASYLRTAIEALSDLQAPMAGAIDVLAQEAAQKGRKPDHRFLMLVHCMAETWAQLLPGQKAGTSSIPDSNDRDGPFVRFIAETVPLLAGYDGVQLGGKVKNALEDLAKSAR
>NZ_CP054619.1|WP_149197400.1|2269747_2270863_-|3-isopropylmalate-dehydrogenase
MAANKKLLFLPGDGIGPEVMRQVRRVIDWMDRKRKITFDVSEGLVGGAAIEAHGVPLSDATLAEALAVDAVMLGAVGGPKWDNPSDYTKRPEAGLLTLRKELGLFANLRPAVVFDALVDASTLKADVIRGLDILIVRELTGGVYFGEPRGITDIGNGERRGVNTQVYTTSEIRRVARVAFELARKRGNKLCSMEKANVMESGLLWRQEVTKLHGEEFQDVELSHMYADNGAMQLLKNPKQFDVIVTDNLFGDILSDEAAMMTGSLGMLPSASLGAPDANGHRKALYEPVHGSAPDIAGRDLANPCATLLSFAMCLRYSFNLDEDAKLIERSIQNVLGGGMRTADIMAPGMARCSTTVMGDSILRELDKLAS
>NZ_CP054619.1|WP_109075248.1|2270934_2271546_-|3-isopropylmalate-dehydratase-small-subunit
MEKFTVLTGVAAPLPMINVDTDMIIPKQFLKTIKRTGLGKHLFDEMRYTPDGQEIPDFVLNKPAYRKASILVSGDNFGCGSSREHAPWALADFGIRCIIAPSFADIFYNNCFKNGILPIKLPKEQVDLLLDDASRGSNAVISVDLEKQTITGPDGGTISFELDPFRKHCLLNGLDDIGLTLQQAAHIDGYEGKQRAGQPWMWG
>NZ_CP054619.1|WP_149197696.1|2271847_2273512_+|hypothetical-protein
MAASREVRPSDRPSDGPPDRRSRLIGIAFLLLAPPAYGLLTLAFGMDANWDLRNYHWYNGYAMLTGRIGRDLLVAQMPSFYSPFLDVPFYWLATHMPARAAGFLWGTLQGINLSLLYLLASFCLRNVPAMKRTLVAVALAVMGGLGGGTLGLIGTTFQDNVVSLGVLGAAAVVAGSLPGILDGRPLPSFARVAAAGLLAGAAMGLKNPTVIYAVGLCLGFLVLPARPWRRLWLAFFFGIGVLVGLALGGGLWMAHLWHDYGNPVFPHMNHIFKSPFAAISDYVNVSFFPPGLWQRLFFPFVFTVHPLTVGEVPWFDLRVLALFVLVPVGFVCAVAGRSMGKRNDWLTEAPATRFLLTALSVTYALWVVMFCIYRYLVPLEMLAPLGLVMAVGLLPLARRLRIGLTVALLAVVQLTVQPADWGRVAWADQWVKAEVPPIEDADDTMVLMAGYWAISHVIPSFPPRVTFVRIQSNFLQPDSVGNGYLAILKDKVASHRGPFLMLSTIPDTAGAAKAAELLGLRLDPQRCRPIPNNLGETLNLCAVDRADGNRETVE
>NZ_CP054619.1|WP_149197697.1|2273666_2274641_+|glycosyltransferase
MQAGPAPTVAVLIPCYNEEAAIGKVVQDFRAALPDAIVYVYDNNSKDRTVEVARAAGAVVRREPLQGKGNVMRRMFADIEADVYVLVDGDDTYHAPSAPELVRRLWDEQLDMVNGARVTEIVAAYRPGHRFGNLVLTGMVAKIFGSRIGDMLSGYRVFSRRFVKSFPALASGFETETELTVHALELRMPIAEVKTPYKDRPPGSHSKLNTIRDGIRILRTIIILVKEERPLPFFSAAFGLLALLSMILGVPVIATYFETGLVPRFPTALLATGLMLLAFLSLTCGLILDTVTHGRREAKRMSYLSLRAPGNHPPLAGVRGDERR
>NZ_CP054619.1|WP_149197401.1|2274640_2275069_+|GtrA-family-protein
MASVASLLDSRFGRLGVQFAKFGVVGVIGLVVDTIVLYAGLALGLQFFAARVPSFFAAATATWALNRAFTFRGAASEPLHRQWAKFIAANAIGGVVNYGVSVGLESTVQMVAEHPFLAVAAGSIAGMFFNFAASKHLVFKGA
>NZ_CP054619.1|WP_149197402.1|2275121_2275325_-|hypothetical-protein
MIEEPNPFADAQEWLYFREALVRLPADDPDVAAALRHADEALAALGFDRTADPNRHRDLSAFVQMAG
>NZ_CP054619.1|WP_149197403.1|2275340_2275943_-|hypothetical-protein
MLHIALLNKMDRAMCAQVLSYGGRDGCEHLRAYDLRSNWDCYSGGQSPVTVAIPADLQNRLRDPLAELYIHHNHPASVSFSPVDLAVALDVNNRARGKLYAHGHDGSTYGVTLANRETIASLYKKAEAGAAQHLRFLISMSHVPFQVAKAHFSHIVCQALDMAGVMHYEFAMSQTRIDDWQRCANYLNDVVAAATDAVGR
>NZ_CP054619.1|WP_149197404.1|2276060_2276912_+|diaminopimelate-epimerase
MTREFLKMHGLGNDFVVIDARSEPYRPSGAEVRAIADRRMGVGCDQFIVLEQTDAPGADAFMRIRNADGSEAAACGNASRCVGWLLMEESGRDRASFQTAAGLLHAYRADNGRITVDMGAPRLDWAAIPLAAPGDTLRVETVEHGGFAAPVAVNMGNPHAVFFVDDAEAVPLDEVGPVFENHPSFPERANIEFAQVLSPTAIRMRVWERGAGITQACGSGSCATLVAAVRRGLTDRKADIILDGGTLTIEWTEDDRVLMTGPVALSFSGRLSAELVSAQLVSE
>NZ_CP054619.1|WP_149197405.1|2276908_2278180_+|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MSDSTDSTTQTGPEIVTFGCRLNTYESEVMRNHARSAGLDDVVIVNTCAVTSEAERQARQTIRKLRRERPDARIVVTGCAAQIDPQRFAAMPEVDQVLGNQEKLQPESWGLPPAEKVLVNDIMSVKETAGHLIGGFEDRARAFVQVQQGCDHRCTFCIIPYGRGPSRSVPIGGIVEQVQALVKAGYNEVVLSGVDITSYGPDLPGSPSLGQMVRRLLALVPELPRLRLSSIDCIEMDDDLWRLIENEPRLMPHLHLSLQAGDDMVLKRMKRRHGRADSIAFCERVRSIRPDVVFGADFIAGFPTETEEMFQNTMRLVEECGLTWLHVFPYSPRPGTPAARMPQVDGAVRKERAARLRAVGEAAEARTLASLVGRTATVLVEKDDLGRTEHFAAIRLGQIFSPGSLVPAAITGIKDGVLTGTPL
>NZ_CP054619.1|WP_149197406.1|2278202_2279519_+|signal-recognition-particle-docking-protein-FtsY
MIFRWFGRKKPEETAPKDEAAKDQSITLESATPAPEPEPEKTPEPSAAQPAPKQETEPVPELAPAPPSAEPQRPVPPAPVAQTPITPPPAAAPVEPPPAPAPMPEPEPVPELPPAPAPAPVAAAAEEAPPTKKGWFAKLKEGLSKSSSKLTDGITSIFTKRKLDDEALEELEELLITADLGPATAAKVTAELARTRFGKEVSPEEVKSTLAAEVSKIVTPVAKPLVLDPALKPHVILVVGVNGTGKTTTIGKLARQFKAEGKSVMLAAGDTFRAAAVSQLKIWGERTGCPVVARDTGADAAGLAYDALERARAEKVDVLLIDTAGRLQNKTGLMEELRKIVRVIKKLDETAPHTTLLTLDATTGQNAHSQVEIFRDMVNVNGLILTKLDGSARGGVLVSLAEKFKIPVHAIGVGEGVYDLRPFDADAFAKSLMGLSAD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	EU399241	Halomonas phage phiHAP-1, complete genome	35466-35497	6	0.812
NZ_CP054619_2	2.9\|1276197\|31\|NZ_CP054619\|PILER-CR	1276197-1276227	31	MN855970	Bacteriophage sp. isolate 515, complete genome	4380-4410	7	0.774
NZ_CP054619_2	2.9\|1276197\|31\|NZ_CP054619\|PILER-CR	1276197-1276227	31	NC_011984	Agrobacterium vitis S4 plasmid pAtS4c, complete sequence	49457-49487	7	0.774
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	NC_013284	Cronobacter turicensis z3032 plasmid pCTU2, complete sequence	18614-18645	8	0.75
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	CP032292	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0073 plasmid unnamed1, complete sequence	31554-31585	8	0.75
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	NC_009779	Cronobacter sakazakii ATCC BAA-894 plasmid pESA2, complete sequence	27480-27511	8	0.75
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	NC_011887	Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence	185050-185081	8	0.75
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	NZ_CP026388	Leclercia sp. LSNIH3 plasmid pLEC-2975, complete sequence	26097-26128	9	0.719
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	MN823994	Leclercia adecarboxylata strain 150707804 plasmid p707804-2FII, complete sequence	14254-14285	9	0.719
NZ_CP054619_2	2.10\|1276263\|32\|NZ_CP054619\|PILER-CR	1276263-1276294	32	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	190715-190746	9	0.719

1. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to EU399241 (Halomonas phage phiHAP-1, complete genome) position: , mismatch: 6, identity: 0.812

ttgaacgggtcgagaagctt---gaagacctgtgc	CRISPR spacer
tagaacggatcgagaagcttgaggaagagctg---	Protospacer
* ******.***********   ***** ***

2. spacer 2.9|1276197|31|NZ_CP054619|PILER-CR matches to MN855970 (Bacteriophage sp. isolate 515, complete genome) position: , mismatch: 7, identity: 0.774

acgacctgaagcacaaggccgacgagacctg	CRISPR spacer
tcgacctgaagaagaaggccgacgacctcag	Protospacer
 ********** * ***********  .* *

3. spacer 2.9|1276197|31|NZ_CP054619|PILER-CR matches to NC_011984 (Agrobacterium vitis S4 plasmid pAtS4c, complete sequence) position: , mismatch: 7, identity: 0.774

acgacctgaagcacaaggccga---cgagacctg	CRISPR spacer
acgaccagaagaacaaggccgacttcaaggc---	Protospacer
****** **** **********   *.**.*

4. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to NC_013284 (Cronobacter turicensis z3032 plasmid pCTU2, complete sequence) position: , mismatch: 8, identity: 0.75

ttgaacgggtcgagaagcttgaagacctgtgc	CRISPR spacer
ttgaacgggtcgagaagcctgaaagcaattaa	Protospacer
******************.****..*   *.

5. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to CP032292 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0073 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgaacgggtcgagaagcttgaagacctgtgc	CRISPR spacer
ttgaacgggtcgagaagcctgaaagcaattaa	Protospacer
******************.****..*   *.

6. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to NC_009779 (Cronobacter sakazakii ATCC BAA-894 plasmid pESA2, complete sequence) position: , mismatch: 8, identity: 0.75

ttgaacgggtcgagaagcttgaagacctgtgc	CRISPR spacer
ttgaacgggtcgagaagcctgaaagcaattaa	Protospacer
******************.****..*   *.

7. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to NC_011887 (Methylobacterium nodulans ORS 2060 plasmid pMNOD02, complete sequence) position: , mismatch: 8, identity: 0.75

ttgaacgggtcgagaagcttgaagacctgtgc	CRISPR spacer
tcgagcgggtcgagaagctcgaagaggagatc	Protospacer
*.**.**************.*****   *  *

8. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to NZ_CP026388 (Leclercia sp. LSNIH3 plasmid pLEC-2975, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaacgggtcgagaagcttgaagacctgtgc	CRISPR spacer
ttgaacgggtcgagaagcctgaaagtaattaa	Protospacer
******************.****...   *.

9. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to MN823994 (Leclercia adecarboxylata strain 150707804 plasmid p707804-2FII, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaacgggtcgagaagcttgaagacctgtgc	CRISPR spacer
ttgaacgggtcgagaagcctgaaagtaattaa	Protospacer
******************.****...   *.

10. spacer 2.10|1276263|32|NZ_CP054619|PILER-CR matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaacgggtcgagaagcttgaagacctgtgc	CRISPR spacer
cggaactgctcgagaagcttgaagagtgcggc	Protospacer
. **** * **************** .   **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

665845 : 675599

Choristoneura_biennis_entomopoxvirus(16.67%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_136704581.1\|665845_666400_-	superoxide dismutase family protein	R4ZFG3	Choristoneura_biennis_entomopoxvirus	1.4e-14	37.1
WP_149197905.1\|666541_666988_+	transcriptional repressor	NA	NA	NA	NA
WP_149197906.1\|666984_667209_+	hypothetical protein	NA	NA	NA	NA
WP_149197907.1\|667498_668317_+	hypothetical protein	A0A1B1IVM8	uncultured_Mediterranean_phage	1.5e-73	51.5
WP_149197908.1\|668376_668649_+	hypothetical protein	NA	NA	NA	NA
WP_149197909.1\|668727_669297_+	hypothetical protein	Q6J1R6	Burkholderia_virus	1.5e-11	30.2
WP_149197910.1\|669310_671206_+	hypothetical protein	A0A0F7L404	uncultured_marine_virus	7.9e-81	30.8
WP_149197911.1\|671205_672012_+	hypothetical protein	NA	NA	NA	NA
WP_149197912.1\|672045_674076_+	hypothetical protein	E5AGC7	Erwinia_phage	1.7e-12	43.2
WP_149197913.1\|674072_675599_+\|terminase	phage terminase large subunit	A0A0S2MVQ4	Pseudomonas_phage	1.0e-25	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage