CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054690	Rhodococcus sp. W8901 chromosome, complete genome	2 crisprs	WYL,cas3,csa3,DinG,cas4,DEDDh	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054690_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054690_1

3361085-3361159

Orphan

Consensus_repeat	Method
CCGGCAGTTCACCCAATGGGGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054690_1

>merge|NZ_CP054690|1|3361085-3361159|CRISPRCasFinder
CCGGCAGTTCACCCAATGGGGGCACACCGGCGGCCGCGCCCGGTCCACCGACCGGCAGTTCACCCGATGGGGGCA

>NZ_CP054690|1|1|3361085-3361159|CRISPRCasFinder
CCGGCAGTTCACCCAATGGGGGCA	CACCGGCGGCCGCGCCCGGTCCACCGA
CCGGCAGTTCACCCGATGGGGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054690.1\|WP_174914776.1\|3363437_3364862_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP054690.1\|WP_174910883.1\|3369726_3371853_+\|acetate--CoA-ligase-family-protein	unknown	unknown	gnl\|CDD\|223972
NZ_CP054690.1\|WP_174910864.1\|3357881_3359225_+\|SLC13-family-permease	unknown	unknown	gnl\|CDD\|115789
NZ_CP054690.1\|WP_174910859.1\|3354682_3354973_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054690.1\|WP_174910862.1\|3354980_3355286_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143492
NZ_CP054690.1\|WP_174910849.1\|3350628_3351885_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|234819
NZ_CP054690.1\|WP_174910880.1\|3368262_3368898_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
NZ_CP054690.1\|WP_174910840.1\|3345930_3346581_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054690.1\|WP_174910886.1\|3371834_3374225_+\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236204
NZ_CP054690.1\|WP_174910855.1\|3353835_3354291_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100006
NZ_CP054690.1\|WP_174910872.1\|3365718_3366027_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367559
NZ_CP054690.1\|WP_174910843.1\|3346577_3348452_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP054690.1\|WP_174910869.1\|3364870_3365572_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP054690.1\|WP_174910877.1\|3367016_3368150_-\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|379252
NZ_CP054690.1\|WP_174910846.1\|3348553_3350020_-\|D-serine/D-alanine/glycine-transporter	unknown	unknown	gnl\|CDD\|236830
NZ_CP054690.1\|WP_174910852.1\|3352045_3353689_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225306
NZ_CP054690.1\|WP_174910889.1\|3374261_3375389_+\|nitronate-monooxygenase	unknown	unknown	gnl\|CDD\|224981
NZ_CP054690.1\|WP_174914772.1\|3344444_3345890_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP054690.1\|WP_174910867.1\|3362041_3363277_-\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	unknown	unknown	gnl\|CDD\|133031
NZ_CP054690.1\|WP_174910874.1\|3366173_3366617_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054690.1\|WP_174914776.1\|3363437_3364862_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.68921e-63
NZ_CP054690.1\|WP_174910883.1\|3369726_3371853_+\|acetate--CoA-ligase-family-protein	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	2.53144e-107
NZ_CP054690.1\|WP_174910864.1\|3357881_3359225_+\|SLC13-family-permease	gnl\|CDD\|115789	pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus. This family represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier.	2.86326e-34
NZ_CP054690.1\|WP_174910872.1\|3365718_3366027_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.10712e-12
NZ_CP054690.1\|WP_174910862.1\|3354980_3355286_+\|hypothetical-protein	gnl\|CDD\|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	5.91794e-16
NZ_CP054690.1\|WP_174910846.1\|3348553_3350020_-\|D-serine/D-alanine/glycine-transporter	gnl\|CDD\|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_CP054690.1\|WP_174910880.1\|3368262_3368898_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	1.38879e-08
NZ_CP054690.1\|WP_174910886.1\|3371834_3374225_+\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236204	PRK08257, PRK08257, acetyl-CoA acetyltransferase; Validated.	0
NZ_CP054690.1\|WP_174910855.1\|3353835_3354291_+\|RidA-family-protein	gnl\|CDD\|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.29769e-64
NZ_CP054690.1\|WP_174910843.1\|3346577_3348452_-\|acetyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	8.85133e-62
NZ_CP054690.1\|WP_174910869.1\|3364870_3365572_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.25982e-79
NZ_CP054690.1\|WP_174910877.1\|3367016_3368150_-\|IS701-family-transposase	gnl\|CDD\|379252	pfam13546, DDE_5, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	2.09145e-55
NZ_CP054690.1\|WP_174910849.1\|3350628_3351885_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	2.10342e-55
NZ_CP054690.1\|WP_174910852.1\|3352045_3353689_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.34754e-15
NZ_CP054690.1\|WP_174910889.1\|3374261_3375389_+\|nitronate-monooxygenase	gnl\|CDD\|224981	COG2070, COG2070, Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only].	4.44471e-61
NZ_CP054690.1\|WP_174914772.1\|3344444_3345890_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.49273e-50
NZ_CP054690.1\|WP_174910867.1\|3362041_3363277_-\|bifunctional-glycosyltransferase-family-2/GtrA-family-protein	gnl\|CDD\|133031	cd04188, DPG_synthase, DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.	3.53986e-75

>NZ_CP054690.1|WP_174910864.1|3357881_3359225_+|SLC13-family-permease
MSIDVLGIVVLALIFALGTWRSVNLGALALIGAVAVGTLVAGVGLDEIYEGFPADIFVLLVGMTFLFGVATANGTVEWVVDRAAHRVGDHAKVLPWVLFAVAAVPTTAGALGPAGVAILAPLGLRLSQRYNINPVLTSLMIVHGSAVGNFSPVNVLGAIVNQTMEREGLSSNPLLLFAGNLAFNVMLGGVIYWIYGGALRRRGADRSDTTSGLPDPTGGDVAQVPDGSGAVAVQGAAATTIAPSRSLPTLTSPQIVTIGAVLVVVAGAMIFGLDIGVLALTAAVVLRLVTPKSSEGAEKSISWNVVLLMCGIITYVALLQHIGTIGRIGHAVAGLSLPLLAAFIICLIAATVSAFASSAGTLGALIPLSVPLLAQGEVPVLGLIIALAVSATAVDATPFSTVGALTVANAPVSQQQRIFSGILRWGLSMIIVAPVAAWLMFVLVPSL
>NZ_CP054690.1|WP_174910862.1|3354980_3355286_+|hypothetical-protein
MPSNGGAANPLRVLVDVGTPGGRTGVRDAPAALGLARECENAPGIALAGVAGYEGVRPNRRDADIVAQVDAHCRETVDAFRAVSPWIQTDSALRGELRIIA
>NZ_CP054690.1|WP_174910859.1|3354682_3354973_-|hypothetical-protein
MTNRGDRDAPRAGVQLSLDDGPGHRRLDARAQLDAAVAAPRRHEIDVVLDRGETQPQLRQGLRRVSVIRRVAVLVDVGWVMVSLRIRIGQGRVITF
>NZ_CP054690.1|WP_174910855.1|3353835_3354291_+|RidA-family-protein
MSWADILTELGYALPATTAPIGAYVPAVRTGNLVYTSGQLPVVDGVIERTGKVGRDVSVADASSAAEICTLNALAAIDALVGLDAVVRIVKVVGFVASANDFAGQPDVVNGASNLLANVFGNAGAHARSAVGVAELPLNAPVEVELVVEVA
>NZ_CP054690.1|WP_174910852.1|3352045_3353689_+|helix-turn-helix-domain-containing-protein
MINVSALIDSLGGALLRPIVSGQRDQIHDVTLADADDTSFDHPGSLVLGFGVDCAAAAVELIDRAVRAEACAVVLKAPLAEDPGVAGPAAELGVGLIELQPQASWTHLVWLTRSILDHSTTLARSEIQHDPSNYGELFAFADAAAATISAPVTIEDAHSRVLAYSELQDTADPARISTIVGRRVPEPIVRHFRSRGVFRRLQSSDEPIWVDAGPDGVLPRLIIPIRAGRELLGSIWAVDPGPLPDDQVHELTRTASVVALHLLRLRAQSGAARRMTVDRLRAGLLSPDNTTDLRLPPGPWRVVAFADAATEAQPEYRLHLWESVMTRYGWPQPLLTSIEGTPMAVVTDTGSARTAGSWAWLQALADDTYAYDNTVSILAGRPAHTTHDLSRSCAEATELISLARKGRAATPSTTYEESWHEVVIARTHAALLTEPPLGAGPIQPLVDHDAERATDYVTTLAAFLVHYGEPKRAAQSLHIHPNTLRYRIKQITDLIGLDLMDARLRLAIAVHLTSILDAADSAASVSPEEAAVEPLPDEQPTSDDRQC
>NZ_CP054690.1|WP_174910849.1|3350628_3351885_+|FAD-dependent-oxidoreductase
MRLCPTTPQRVCIVGAGMVGLSTAWFLQERGVEVTVLDRKGIAAGASWGNAGWITPGISTPLPEPAVLRYGVRAVLSPSSPVYVPPTLNPRLIRFLASFARHSTAARWRVAMEALVGINQGALSAFDELADGGVQARAHEAKSFLAAYRTPAERTVLLEEIEHIRAAGQGIEFDVLSGDDARGVEPSLSDEVGAAIRLHGQRFMNPGEFVHSLADAIRERGGTICEGVDVNGVFDDGSAVRISAPTGDVGQFDALVLATGTWLGDIARDFGVRIPVQAGRGYSFSVAIDHVPAGPVYFPAQRVACTPLGDRLRVAGMMEFKTPDAALDRRRIAAIVEAARPLLRGADLNARRDEWVGSRPCTPDGLPVIGATRSPRVFAAGGHGMWGITLGPATGRLLAETITTGRTATELAPFDPLR
>NZ_CP054690.1|WP_174910846.1|3348553_3350020_-|D-serine/D-alanine/glycine-transporter
MSEYTEPRVAATPVAVAADESHPPGLSRQLSNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSVIFVYTIIGTMLFFVMRAMGELLLSNTSYKSFADFASDLLGPWAGFFTGWTYWFCWIVTGIADVIAIAGYVSYWWGSLPLWIPALVSVALLIGLNLPSVKAFGETEFWFALIKIIAIVGLIVVGLAMVFTHFIAPGGAEASFANLWNDGGFFPTGIMGFVAGFQIATFAFVGIELVGTTAAEAKDPEKNLPKAINSIPVRMMLFYVVALTVIISVTPWREIVADRSPFVAMFSLAGLGIAASVINFVVLTSATSSANSGIYSTSRMVYGLAQEGDAPAAFGKLTRRRVPANALYLSGVFLLAGVVMVVVGGSIIAAFTLVTTIASLCFMFVWSIILISYLVYRKRRPHLHQASTYKMPGGVPMCYAVFAFFLFLIWAFTQKDDTLQALLITPVWFAVLGVAWAIVRRRPAQMARAAAFREETGEEG
>NZ_CP054690.1|WP_174910843.1|3346577_3348452_-|acetyltransferase
MDSSPPTLARRVDGRGGAEIPTARLDESGGRRYRRGMDGVRAWAVLAVLVYHLDETWLPGGFLGVDIFFVISGYLITDQLHGLFSERRTIPLRTFWVRRARRLIPAVSVVVVVATAAATVIRPTLVSDIGGELLAAATFTSNWWNIVSGMSYFAGFGEPSLFLHLWSLAVEEQFYLVWPVLFVVVMRVTCSRSLCAVLAGAGALASLAAMIVLYEPGVDASRVYYGTDTHAFGLLVGSALALSMPSAWVRTMVPVRRRALDTAGVVGAASLVVMVAVLDGASPFLYSGGFGLVTVAAGAVVVGAVADGGWFARTLAARPLRWIGLRSYGIYLWHMPVIVLLQAAVPAMSPLVFAATATSISFAAAALSYRWVEDPIRRHGFRGTLVRFTEYPRSLPSSSGRGVAVAVAATTVFTAAAGIVFAPPADDLQSQIAAGQSAARAPQTPSVTPTSPPAGIPLRAETAGPPGSGVTALGDSVMAAAGRELRERLPGADVDVEIGRQMWDLPDLVAQLRDTGRLGKVVVIGLGTNGAFDESALDAALRTIGSSRRVIIMNVSVPRPWQDAVNAALRAAQRRWPNTVIVDWKVATQGVPEVFWEDDTHPRSPTGTGLYVDLLTRAIEQQSR
>NZ_CP054690.1|WP_174910840.1|3345930_3346581_-|hypothetical-protein
MNGNHPAGRRRKDRTPARPNGVPQARGRIVDVRGVNRVPTAALRALLLVLTGLTLTVACSAILTGSGVTDVGEPPVGIATGPTLYYLDGTALRPVTAPQGTVWDEPWGKLGDLRRAIQMLGLGAGRELRDDTRELRNEVPRMGASLADIDVTVTETVITVSVPVYDLSPPAVDQVVCTALAVDAARGNPGQDKSVDILLHNGLSGDKVAGRKCPVL
>NZ_CP054690.1|WP_174914772.1|3344444_3345890_+|HAMP-domain-containing-histidine-kinase
MRLPGWRGGLRARLVIAFILVTLAAIASAATAGYVSARNSLLAADQDRAIRDLRQRVTALAPELQYPPDQETLNAFAAQLPGNATVTYRDLQSTTESAHVTINPELRDAVRDHTRVQVQYVSTPTGPELVIGMPVTIWQPGDASQPSGLEVYSGHDLAPTYQQVQVQSRTAWLVGAVAVPFAILVGLLSSNGVLRPVRDLRHATRRLSAGDLTARLRVRGTDELADLAHTFNETADELERTIAELQRLEEDARRFVADVSHELRTPLSAMLAVTDVLEADVPRMPDDAARSAGLLVRETRRLTRLVEDLMEVSRFDAGTASLILEEVDVGEAIRATLVARHWDDTVDLDLPRDVRAQVDRRRLDVIIANLVGNALRHGRPPVTVVLHADRDWIEVVVNDHGDGIPDDALPHVFDRFFKADTARGRSESSGLGLAIAQQNARIHGGDIEVGNVPGGGARFVVRLRRNADQNLNEVQHDPDDQ
>NZ_CP054690.1|WP_174910867.1|3362041_3363277_-|bifunctional-glycosyltransferase-family-2/GtrA-family-protein
MTTKSIFHQRDRPPPDRTDTVTLDLVIPVYNEERDLEPCVRRLRAYLDGSVPYPSRITVADNASTDATLAVANRLAEEFDSVRVVHLDEKGRGRALRTVWSASDSEVVAYMDVDLSTDLNALLPLVAPLVSGHSDVAIGSRLTRSSRVVRGPKREAISRCYNLILRGALRAKFSDAQCGFKAMRTDVARQLLPLVEDTGWFFDTELLVLAERVGLRIHEVPVDWVDDPDSTVDIVSTAVADLKGVLRVGRALATGALPVAALRTSLGREPLVPGVPHGMVGQLVRFAAVGAASTVAYAVLYLALHPVIGAQAANLVALLITAVLNTAANRAFTFGVRGRADAAKHQAQGLAVFAVGLALTSGSLFALHHWLPDASKHLELAVLVAANLIATLTRFVALRRVFRNHLEGAAR
>NZ_CP054690.1|WP_174914776.1|3363437_3364862_-|HAMP-domain-containing-histidine-kinase
MGRRVRQIPLRFMLMAALVLLAGLGLFASGVAVTSSLENSLIARTDATLRDAAHGWAKPEALSPLPPMTLPLPLPAPDRPPTPFFVLTQAPAGQTQLVINDDFKQPDLPQDLGPEPVTVGSVGDPGQRWRALANSSPMGKVTVAVSLSDVDDTVQRLVILQVVIGAVVLLVLGVLGYFVVRRSLRPLVEVEHTAAAIAAGDLDRRVPDHRGAGTEVGRLSAALNGMLAQIQTAFAATAASEDSARRSEEKMRRFVADASHELRTPLTTIRGFAELYRQGAMTDTAVVMARIEGQAARMGLLVEDLLMLARLDAERPIERAPVDLLAVASDAVHDARAVAPGRRIGLEVLGGPGLAEVLGDVARLRQVLGNLVGNALSHTPEDAEVMVRVGTEGPNAVLEVADTGPGLGPEAAERVFERFYRVDASRNRSSGGSGLGLSIVAALVSAHGGTVTLESAEGEGAVFRVLLPRIERQD
>NZ_CP054690.1|WP_174910869.1|3364870_3365572_-|response-regulator-transcription-factor
MSVTKPAARVLIVDDEPTIVELLSVSLRFQSFEVETAANGCEGLDRARAFRPDALIVDVTMPGMDGFGLLRRLRADGVDAPVLFLTARVTVDDKLAGLALGADDYVTKPFSLEEVVARLRVILRRASRDEQVDPARIRFADLELDDETHEVWKAGETASLSPTEFTLLRYFMVNAGVVLSKQRILDHVWHYDFGGEVGVVETYVSYLRRKIDTGEKRLIHTLRGVGYVMREQR
>NZ_CP054690.1|WP_174910872.1|3365718_3366027_+|helix-turn-helix-transcriptional-regulator
MSTRLRRTPATLAVLAELSSSAGPIWGLQIVRETGRPAGSVYPILARLEEAGWVESAWETDQAHSGPRRRYYTLTHDGRARATAMLAPATPAPAAIYRARLA
>NZ_CP054690.1|WP_174910874.1|3366173_3366617_+|hypothetical-protein
MTIQSQKARFHMTDSMNAVSTVKAIGLQIVCVALVLGGVQGSYAWWSYALWGVGLAGSVWIAVAAAHAAVRAPAASRARRAASAAITACIAVLIAAVVEINLHFEAVDAGSPNRPLVVIMVATGFAGVAALLTLAGASVAALQQRSR
>NZ_CP054690.1|WP_174910877.1|3367016_3368150_-|IS701-family-transposase
MVVDVVAAELDTLHERVSGRFARAEPRSRVREYVSGLVAGLERKNGWTLAERAGEVSPDGMQRLLRRADWDVDGVRDDVRDYVVERLGDRSGVLIVDDTGFLKKGTRSAGVQRQYSGTAGRVENCQIGVFLAYASDAGHALIDRELYLPESWTCDRARCRAAGIDDEVEFATKPTLAQHMIERALDAQVPFSWVTADEAYGQVKYLRAWLEERDVSYVLATRRNDDVFTTDGRTGRADHLIEEVPAKQWRRISAGNGAHGPREYSWARVPIRITRAPGRGHWLLARRSLSDPTQIAYYICAGPRRTTLTELAAVAGSRWRVEECFQQAKNEAGLDQYQVRTYRAWYAHTTLSMLALAWLAGTKTEAAKGEPEHTIRA
>NZ_CP054690.1|WP_174910880.1|3368262_3368898_-|TetR/AcrR-family-transcriptional-regulator
MTTTSRALTEPTGSGAGRPRDPNVDRRVFDAALEVFGEFGWKGFSVVAVAKKAGVARASIYLRWPNSTDLLIDAVHSRVRVVADRAFDDVRTELLSLANQLLRLHVADSGRSTVRLMLEAPLVPGLKEYWDEVNSSQTVAARAIVARAIERGELPQDTSATLLLDTLCGAAMMHVQAVPSHLRELQLANLDAYAERLVDFVLAAARSVTGE
>NZ_CP054690.1|WP_174910883.1|3369726_3371853_+|acetate--CoA-ligase-family-protein
MPTAITPERLTALFRPRNVALVGASNKSNFSLVAYHNLVQYGFGDRTYLVNKRGAETHGQQTYTSCTEIPVPVDLAYMMVPQAGTLDALTDAHAAGVRNAVILSSGYAEAGADGRKAEAELLAHAESLDMALLGPNMLGFTNFVDGVTATSIPVTQRSPGSIGLLSQSGASSSAMADFAAMIGADLSYMVTLGNEAMITVGHVLDFLVEDESTKAIAIFMETIRDPETFRRAALKAAARGKAIVILKAGSSELSARTAAAHTGALVGDDKVIDALFREFGVIRVDSIEDMMVTAQVAAHVGLLDRPGIGVASISGGACDIIADRAQDRGALLPELAPQTRSTIEEFFAAYGTIQNPLDVTGAAVIDPSIFTKSIVALSKDPSIGVVAVVSSIPWENDGPSPAEALISSIGNGIAQAEVPAVFVNQVLQPNTDYTRKIMTDGNVPVVVPGIQAGVVALQNVVTWSHRVQEITSSASHAPADVAVPDSSARRGKWSESTARGLLADAGVPVVPATLVTTADEAVVAAAAAGAAVVLKIASPDILHKSDIGGVRLNVSGADDVRAAFDAVHASAAAVPGARVEGVLISPMRPPATELLVGVVRDPQWGPILAVGLGGIFVEVLSDSVLTPLPVTPDRARQLLDQLRGSTVLDGVRGGAAANRDRLAEVISRVGDLAVALGPDLVSLEINPLRVNGSEIEALDAVVEWKDQA
>NZ_CP054690.1|WP_174910886.1|3371834_3374225_+|enoyl-CoA-hydratase/isomerase-family-protein
MEGPGVSTPHSLDPRTPVVVGVGQFTERVDAPEYRGLSAVDLAAGAVSAALTDTGADTNAVAAAIDTVAGIRQFETSTPGAPAPFGKSNNYPRSVAHRVAANPSRAILEVSGGQGPQHLVTELARAIVSGDSSVAVVFGSEAISTVRHLAKTENKPDFTETVDGGLEDRGYGLEGLMPMSAVNHGLTDAPSQYALFENARRARLGQTRDEYACGMGKLFAPFTRVAASNPHSAAPTERTAAELVTPTERNRPIADPYTRFVVARDQVNQGAAVVLMSVAAARELGVQEDRWVFLHGHADLRERDLFDRQDLSRSPAAVMASTHALEVAGIDVAELATIDLYSCFPIAVSNVADGLGLSSDDPRGLTLTGGLPFFGGAGNNYSMHAIAETVDRCRKEPGSFGFVGANGGLLSKYSVGIYSTHPTGWREDRSTELQAEIDAWPTVPLTNHADGWATIETCTVKYDRNGDHTGIAIGRLESTGERFIASGIDGDDGILALLNSPEPIGQRFYVRSFGYGNRVTTTEMRMNELHPPTVPVLREGYEHVLVHREGHRLEITINRPQARNALFPPAHEELSEIFDAYFADPDLWVAIITGAGDQAFSAGNDLIYSASGKPNYVPKSGFAGLTSRRGMNKPVIAAVNGFAMGGGLETALACHLVVVDESAQLALSEVKVGLFAGAGGAVRLPRMLPPKLANELILTGRRMGAQEALGHGLANRVAPEGKALDVARELAEAIIVNSPTSVRLSLEVMEQAQGIADVIDAVNARTTAVDDLMTSEDMREGLTAFAQKRPPEWRNR
>NZ_CP054690.1|WP_174910889.1|3374261_3375389_+|nitronate-monooxygenase
MKTPICELLDIEIPLLAFSHCRDVVAAVTNAGGFGVLGASSHTPEQLEEELAWIDDHVNGKPYGADIVVPEKFEGKGQHLEAADLLALVPDEHTDFVTKLLTDHGIEAAREQVVAMIFAPNQVEEGEKLLEVALRHPIKLIANALGVPPQYMIDRAKEAGIPVAALVGAKEHAIRQVKAGVDILIAQGTEAGGHCGEVTTMVLIPEVIEAIKPIREVPVLAAGGIVTGRQMAAAVALGAAGAWTGSVWLTTPEAETAPYTVEKMIAASSRDTVRSRARTGKPSRQLKSAWTEAWSAPGSPDPLPMPLQTLLSEGNLRRIDGLAEKGDKGAQDLATYWVGQGVGLMNKVKPTREVVLDFAEDYLEATERLANSLGD

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Crispr_ID: NZ_CP054690_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054690_2

5689764-5690019

Orphan

Consensus_repeat	Method
GAGCGGTCAGCGACCCGTGCCACCG	PILER-CR
CACCGGGCGGTCAGCGACCCGTTCAGGGCGGCCC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP054690_2

>merge|NZ_CP054690|2|5689764-5690019|PILER-CR,CRISPRCasFinder
GCGCTCCGCGGCCGATGCCGCCGCGTCCGGTACCCCCGAACGGTCAGCGTCCCGTGCCCCCGCAGGGACCGCGTCCGATGCCCCCGAACGGTCAGCGACCCGGGACACCGAGCGGTCAGCGACCCGGGACACCGGGCGGTCAGCGACCCGTTCAGGGCGGCCCACGGCCCACACCTCAGCGCGGTCCCGGTCCGATGCCCCCGAGCGGGCAGCGACCCATGTCACCGGGCGGTCAGCGACCCGTTCAGGGCGGCCC

>NZ_CP054690|2|1|5689764-5689897|PILER-CR
GCGCTCCGCGGCCGATGCCGCCGCG	TCCGGTACCCCCGA
ACGGTCAGCGTCCCGTGCCCCCGCA	GGGACCGCGTCCGATGCCCCCGAACGGTCAGCGACCCGGGACACCGA
GCGGTCAGCGACCCGGGACACCG

>NZ_CP054690|2|2|5689869-5690019|CRISPRCasFinder
CACCGAGCGGTCAGCGACCCGGGACACCGGGCGG	TCAGCGACCCGTTCAGGGCGGCCCACGGCCCACACCTCAGCGCGGTCCCGGTCCGATGCCCCCGAGCGGGCAGCGACCCATGT
CACCGGGCGGTCAGCGACCCGTTCAGGGCGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054690.1\|WP_174914232.1\|5680889_5681339_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP054690.1\|WP_114720246.1\|5695297_5695918_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP054690.1\|WP_174914240.1\|5687063_5689496_+\|glycoprotein	unknown	unknown	unknown
NZ_CP054690.1\|WP_174914238.1\|5684931_5686401_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|131739
NZ_CP054690.1\|WP_174915058.1\|5697026_5698205_+\|NADH:flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|239201
NZ_CP054690.1\|WP_114720255.1\|5702070_5702394_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP054690.1\|WP_114720249.1\|5699440_5700175_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP054690.1\|WP_174914242.1\|5694513_5695290_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054690.1\|WP_114720224.1\|5681395_5681770_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380433
NZ_CP054690.1\|WP_174914244.1\|5696010_5696985_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187539
NZ_CP054690.1\|WP_174915054.1\|5683689_5684451_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270256
NZ_CP054690.1\|WP_174914246.1\|5700202_5700796_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP054690.1\|WP_174914236.1\|5682886_5683693_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|130643
NZ_CP054690.1\|WP_174914248.1\|5701012_5702002_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP054690.1\|WP_174915056.1\|5690056_5693806_+\|peptidoglycan-biosynthesis-protein-MviN	unknown	unknown	gnl\|CDD\|223800
NZ_CP054690.1\|WP_114720242.1\|5693867_5694449_+\|RNA-polymerase-sigma-factor-SigM	unknown	unknown	gnl\|CDD\|236604
NZ_CP054690.1\|WP_114720232.1\|5684456_5684864_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133390
NZ_CP054690.1\|WP_174914230.1\|5680459_5680870_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376829
NZ_CP054690.1\|WP_114720236.1\|5686512_5687067_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239645
NZ_CP054690.1\|WP_174914234.1\|5681816_5682890_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224043

Protein	Function_ID	Function_description	E-value
NZ_CP054690.1\|WP_174914232.1\|5680889_5681339_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	2.77039e-11
NZ_CP054690.1\|WP_114720246.1\|5695297_5695918_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	7.03855e-09
NZ_CP054690.1\|WP_174914238.1\|5684931_5686401_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP054690.1\|WP_174915058.1\|5697026_5698205_+\|NADH:flavin-oxidoreductase	gnl\|CDD\|239201	cd02803, OYE_like_FMN_family, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	1.83404e-109
NZ_CP054690.1\|WP_114720255.1\|5702070_5702394_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	7.37187e-46
NZ_CP054690.1\|WP_114720249.1\|5699440_5700175_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.56305e-89
NZ_CP054690.1\|WP_114720224.1\|5681395_5681770_+\|cupin-domain-containing-protein	gnl\|CDD\|380433	cd20299, cupin_YP766765-like, Rhizobium leguminosarum YP_766765.1 and related proteins, cupin domain. This family includes mostly bacterial proteins homologous to Rhizobium leguminosarum YP_766765.1, a protein of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	5.89297e-16
NZ_CP054690.1\|WP_174914244.1\|5696010_5696985_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187539	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs. This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	7.56941e-51
NZ_CP054690.1\|WP_174915054.1\|5683689_5684451_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270256	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.22342e-92
NZ_CP054690.1\|WP_174914246.1\|5700202_5700796_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.26491e-07
NZ_CP054690.1\|WP_174914236.1\|5682886_5683693_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|130643	TIGR01581, Molybdenum_transport_system_permease_protein_modB., NifC-like ABC-type porter. This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.	5.38165e-71
NZ_CP054690.1\|WP_174914248.1\|5701012_5702002_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.04752e-153
NZ_CP054690.1\|WP_174915056.1\|5690056_5693806_+\|peptidoglycan-biosynthesis-protein-MviN	gnl\|CDD\|223800	COG0728, MviN, Uncharacterized membrane protein, putative virulence factor [General function prediction only].	1.97437e-102
NZ_CP054690.1\|WP_174914234.1\|5681816_5682890_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	7.16992e-84
NZ_CP054690.1\|WP_114720232.1\|5684456_5684864_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133390	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.	2.07446e-12
NZ_CP054690.1\|WP_174914230.1\|5680459_5680870_+\|hypothetical-protein	gnl\|CDD\|376829	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family. This is a family of DNA-binding proteins. Members of this family form homodimers which bind DNA via a tweezer-like structure. The conformation of the DNA is changed when bound to these proteins. In bacteria, these proteins may play a role in DNA replication-recovery following DNA damage.	0.00671851
NZ_CP054690.1\|WP_114720236.1\|5686512_5687067_+\|NUDIX-hydrolase	gnl\|CDD\|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	2.1199e-47
NZ_CP054690.1\|WP_114720242.1\|5693867_5694449_+\|RNA-polymerase-sigma-factor-SigM	gnl\|CDD\|236604	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed.	1.63306e-83

>NZ_CP054690.1|WP_174914240.1|5687063_5689496_+|glycoprotein
MTVASRPAWRRSGARVLTALTLVLMMIGAVVGAGAAAAQPTTQTQPESTTGAPVTKSRAQPKFLELHIDDVTPTAVTTTTDPVVTVRGTVANIGDRPVTDVGVRLQRAPAVGSSEELRTSLDLDQGEFDVVGPFVEVASSLEEGERKQFTLALPLRSISGWSLDITEPGVYPLLVNVNGTPAYGGQARLDDARFLLPVLGLPRATGTADSAPQGTDSGSVTAPVPPDTSDPLAVTMLWPLADQPRLAAGIPGSVNDKVRLVDDVLAGSLSQGGRLEQLLAAAEFATGPDVDKDKRLTDSVCLAVDPDLLITVSNMSGGYLVVDDPANPSGPAHEGAGRDAAAAWLDRLESLAHSMCVTAVPFAQVDLAALSRVDDPSLTASALQSPSDIVDSILGVTSLRNVTWPDSGVLDDSSAQMLHSRGPTTTLLAANAVESTQSSGKTVTIAGGGADAVTAALFDVSAAAALAAVGSSPQTPSYVPERARYNLDRDSRTARLQDALGAVTWSSLQSPGTASRTVDRSMLIAPPQLWSADGDEAAAVLSTVSTLLRTGLATPRPLAKLAEQRPATPEIASLAYPQRAIVDGTPESVERGVGAQAPRIDELMRTLVDDPQVPLTPTRFMAPLREDLVRAMSLSGRRDQNTATTTAADEAAHVRVSNVATAIDAMYAAVTVLAPGGVYSLASEQSPLLLVARNDLPVAINVKLRVDAPDEMHVTDIGPQQLPPRGSRSLQVPAEVSDSRTMVVDFSLTTESGQNLGEQTSVTVRSNAYGQALAIITACAGALLLFLAGRRLWHRFRGQPDRADEGYERP
>NZ_CP054690.1|WP_114720236.1|5686512_5687067_+|NUDIX-hydrolase
MSAAERANRNRRSSRRRGAGADSATPHMRTVRETSAGGLVVDGLGGPEDKLCAALIGRTDRRGRLLWSLPKGHIEQGETAEQTAMREVAEETGIRGSVVASLGSIDYWFVTEGRRVHKTVHHYLMRSLGGELSDADIEVTEVAWVPLSELDSRLAYADERKLAEIAGQLIAEMEPSRVRGTDAE
>NZ_CP054690.1|WP_174914238.1|5684931_5686401_-|CCA-tRNA-nucleotidyltransferase
MNAPTPDADRRARLLRGAHETLSALSDVLTPLGARFADAGHELYLVGGSVRDAVLGRLGTDLDLTTDAHPEQVQAILRGWADNQWDTGIAFGTISAAKGNDQIEITTYRTDTYDGVTRNPEVQYGTTLEEDLVRRDFTVNAMAVRIDAEGTFEFVDPLGGMDALLAGVLDTPAAPEISFNDDPLRMLRACRFVSQLGFTLAPRVHQAIVDMAGQIDRITAERVHTELDKLILGEYPIDGINVMCETGLADHVLPEVPQMKLEIDEHHQHKDVYWHSLTVLKQAIDLEDGNPDLVLRWAALLHDIGKPDTKRNEPGGGVSFHHHEVVGAKLVRKRMRALKYSKQMVDEVGQLVFLHLRFHGYGKGQWTDSAVRRYVTDAGDLLPRLHKLVRADCTTRNKRRAAALQATYDDLEQRIARIAEQEDLARVRPDLDGNAIMELLGIPAGPQVGKAWKFLKELRLDRGPLDRDEAEAELLKWWAEQSENQQPES
>NZ_CP054690.1|WP_114720232.1|5684456_5684864_-|helix-turn-helix-transcriptional-regulator
MPDIRIRDAAQLLGVSDDTVRRWVDAGTLAAHKDDSGRMVVDGKQLAEYARANAAPTPENPLGVGSSARNRFVGLVTRVVADGVMAQVEMQCGPFSVVSLMSAEAVRELKLEPGSIAVAVVKATTVIVETPGVPS
>NZ_CP054690.1|WP_174915054.1|5683689_5684451_-|molybdate-ABC-transporter-substrate-binding-protein
MRGAVVAVAAVLTTALAGCSGATDAGTEGGDSITVFAAASLKSTFTELGQRFEDQHPGTRVVFNFAGSSDLVAQLDQGAPGDVFASADTANMTKAVQAGLTASEPVNFATNILTIVVPPGNPANIASFADLARPDVKVVVCAPQVPCGTATQKIEDATGIRLTPVSEESSVTDVLGKVVTGQADAGLVYVTDAAAAGDKVAEIPFPEATKVVNTYPIVVLKDSGNPEVASEFTGYVTGPEGRAVLSAAGFGAP
>NZ_CP054690.1|WP_174914236.1|5682886_5683693_-|molybdate-ABC-transporter-permease-subunit
MTVRPRVRVPASLPVWIYVPAAVGALLVVLPLVAMLVGVDWPNFWELVTSESSLDALVLSLKTASISTLLCVLLGVPMAMVSARCSFPGLAALRALVLLPLVLPPVVGGLALLYTFGRRGLIGQHLEVAGIQIAFSTTAVVLAQTFVALPFLVISLEGALRTAGRRYEAVAATLGAPPTTVLRRVTLPLVLPGLISGAVLAFARALGEFGATLTFAGSLQGVTRTLPLEIYLQRETDPEAAVALSLVLVVVAVAIVLGARTRRAAGAL
>NZ_CP054690.1|WP_174914234.1|5681816_5682890_-|ATP-binding-cassette-domain-containing-protein
MNGLSVRARVDARGFDVELDVAPGEVLAVLGPNGAGKSTLLDVVAGLLRPDAGRVELGDRVLTDFSKNVAVQPHQRSVALLAQEALLFPHLTVRENVAFAPRSAGLGRRESYASAQRWLDEVDAAALAARRPRQLSGGQAQRVAVARALAADPQVLLLDEPMAALDVAAAPALRALLRRVLRTGDRTAILVTHDVLDALSLADRAVVLDGGRIVEQGSVDRVLTRPRSAFAARIAGINLLSGKIRDGVLDTAAGAVSGIGEDGCGDGEHAVAVFSPTAVAVHREHPEGSPRNIFRVRIAEIEGRGHAIRVRTDDHVDGSAGLVADVTATAVAELDLAPGDDVWFAVKATEVAVYPAR
>NZ_CP054690.1|WP_114720224.1|5681395_5681770_+|cupin-domain-containing-protein
MPVRKDGDHLTHRMHESRFHSYVAPSRGSRQLCAWRTDLAPGSDGAPHTVSHEEVFLVLHGSPTVTLDGRRTPLAAGDVVLVPEAATVQLDNHGDGTASLWVTTSVGLTATTADGGIITPPWTR
>NZ_CP054690.1|WP_174914232.1|5680889_5681339_-|MarR-family-transcriptional-regulator
MSRDEPRADLLMLLMRAASTLAEQINEAIVVQGNSTLRPAHGLVFVRIAGNGATVSEIGAFLGITKQSAAVIVDELTASGYVDKQPHPQDRRAQLVQLTSAGLDVTAAATDAALARWHAASAVLGADTMASLVRALEEIGRGGTPRPVW
>NZ_CP054690.1|WP_174914230.1|5680459_5680870_+|hypothetical-protein
MNHRAPGHSHGWTETVVDQQDRLLSAAATRRSRAESADGAVAVEATADGLIHNWHIGEELRGTDVREVVAAVVRLQHEAVADARDELAAAAAALREDPRFRAVVDRHVDAIDRPVVSETTPDNDGYFAHLTVWDRG
>NZ_CP054690.1|WP_174915056.1|5690056_5693806_+|peptidoglycan-biosynthesis-protein-MviN
MAARPAEAPAPAPAPAPAPKTETQTQTATPDEPQKKSLLAATGSIAFATLISRGTGFLKQLLLLTALGPAVASAFTVASQIPNMISELVLGAVLTAIVVPVLVRAEREDPDQGAAFVRRLFTAALALLGTAALFATAAAPILTTYVFLPEDGEVNTELTTALCFLLLPAILFYGMSALLTAILNTRQVFKPGAWAPVLNNVVVLGILAAYWLVPGEISLDPVSISDPHVLILGLGVTAGVVTQAVSLVPAIRRQGISLRPLWGIDDRLKQFGGMAVAIVLYVLISQLGMMFATRISAAADEAGPAIYTNAWLLLQLPYGVLGVTVLTAIMPRLSRNAAAEDTPAVVDDLSVATRLTMIALIPVVTFFTFAGPQIGHALYGYGNFGAGNAERLGEAVSWSAFTLIPYSLVLIHLRVFYAREQAWTPTWIILGITGVKIALSALAPVLSSDSQHVVILLGVANGLAFVAGALIGGYLLHRSLGDLRMANVGKTVWVVLLASAAGAISMFAADKLLGLDRLSESFGGPGAMIRVAITGALMLVVTFILMWLAKVPEIMAITVAVTRRIPGLRGRATAEEAPATVAVGSSYEPDTELIPVIRDLPRALDRPDGLPYPGRSEAYVGGDYIPDEFIEGARVSDDDGADKRTGTSDDVTGVENGNTKVADAATTSTNPTDEPSDASPAPSNSDENDSAAENSATAFDDAAASRDRRRRGDLNVDTGVFSIGSPMPPLRVAGAVPEPRPQLRGPQLMPGASVAGGRYRLLAPHGGARGLQFWQALDIKLDREVALTFVDADQRAEGPAATGPDGPQAILSRTLRLGRINSSGLARVLDVVRGSSGGIVVAEWTPGRSLKEMADTDPSPIGAARAVRALAAAAEAAHRGGSALSIDDPDRIRISTAGDAVLAFPGTLSDADPASDVRGLGAMLYALITARWPLDDGTESSEGMRPADRDPSGRPVEPRAIRPEVPFEISAVAVRALGGDSGIRAAATVQHILDQATVVDQKTDLMPALRLGQRAPGSDSHALADPEAVAAEKQKSNRTLIALVSLGALTIVVLALIGWWLANLLAGGNSDEPLTNQNLGLTTTAEAPATSAESSAAAPPPAATRPVTPAGAAVFSPQGTPDSAANAGLAIDGNPATAWSTDAYFQPFPALKNGVGLMVTLPEAANLSAIQITSTSPGTQVEIRSAPAPNTSLDQTRVIGNGTLEDGVTEIPLKTDGATKNVIVWITELSTKGGKNQSDVAEVSFTAAP
>NZ_CP054690.1|WP_114720242.1|5693867_5694449_+|RNA-polymerase-sigma-factor-SigM
MRIFRGVAKADLSDAQLLAAHASGDGGAFAELLSRHYDHLWHVARRTSYTVEDAADALQDALLSAHRTAGSFREDAAVRSWLHTIVVNACLDRIRRNRVRPTVSLSADETVDPRDERDHIAESETAMLVDRALLRLSAEQRAAIVAVDMEGYSVAEAAARLGVPEGTVKSRCARARAKLAGHLEYLRDVGNRS
>NZ_CP054690.1|WP_174914242.1|5694513_5695290_+|hypothetical-protein
MTDHDDGEPLGPPFSTELLADLHADALTDDVSARLWPLVRQDPDALAVLDSLDAVTARLGEAGRDHSVETPIPQDVAARINSALGLNDSQTPRNVTALSDAPSRRRMITWITVSAASMAAAVAVVFALTSLDGSESAPPTVIATPSSTAAEPAPPSAVDLGTDLDGDQVLALMRESRSTRTETGIGELGNPAVRSACLQAIGIDPARPVVGTREVSYRGSAAVLMLIAGPRPPALTAVVVGSGCDAGAPDLLAQTEIG
>NZ_CP054690.1|WP_114720246.1|5695297_5695918_-|TetR/AcrR-family-transcriptional-regulator
MSAQTTAGVPPTGRPRDPRIDTDVLAATREMLLEVGWEQLSLRAIATRAGVSRAALSRRWASKAHLVLDALLGATPDLEPFEGTDRAGWIDWVVTGSAQLFSRPDVREALPGLLAALRDHEDMRAALWQGFSGPATALFVAHGSDDASEEDRARDLRDAKAVLVAAAGAALFSSLIAKDDDTPELRARIRELLTPVADRELQADDN
>NZ_CP054690.1|WP_174914244.1|5696010_5696985_+|NAD-dependent-epimerase/dehydratase-family-protein
MRIAVTGGTGYLGAHTTRALLDDGHRIRLLVHPNESATEIVSLFGDAADHVEVRSGDIRDPEVVAALLDGCDAVLHAAGVVGTDNSREALMWEVNTAATATLLTRAALLGLDPIVHVASYSALFPSPDPVIGPDSPTAPGRSAYGRTKAAADRIARALQDAGAPVVITYPSSVVGPGLGGMRGVTATGWAPMVAAGAAPRLRGGMQMIDVRDVAAVHAAAMRPGRGPRRYMCGGELIGFNELVDIPERASGHRIRRIPMAPSMFRGAGRVADLIGTVLPVSAGFSYEAAWLLTAATPTDDSRTLSELGLTWRPVRDALTASVTP
>NZ_CP054690.1|WP_174915058.1|5697026_5698205_+|NADH:flavin-oxidoreductase
MWEPARLGPLTLRNRIIKAATFEGVMPHGRVTAELIDFHAEVARGGAAMTTVAYCAVSPGGRVHNNTLVLDGNTGRDLRQLTDAVHAEGSLACAQIGHAGLVANQRANKSRTLAPSTRISAPAMGLVRAATRDQLEQVARDFENAARVAVDAGFDALEVHLGHNYLLSSFLSPNLNRRTDVYGGSVVARSRFPREVLERIRTAVGGSVAVTAKFNMADGVPGGLWLDQSLQIARLIESDGHLDGMQLTGGSSLLNGMYYFRGEVPMAEFVAAQPKLVGLGLKVYGPRILPTYPFEEAFFLPLARQFREALSMPLILLGGINDLDTVRTALHDGFEFVAMARALLRDPYLPEKFRRGLATEGLCIHCNKCMPTIYTGTRCVVREALWENTRAR
>NZ_CP054690.1|WP_114720249.1|5699440_5700175_+|ABC-transporter-ATP-binding-protein
MSARRSSAQENTVSTTETAIETAALDIVDANLRLGDGEQTVTALDKVSLTVRPGEMVAVVGPSGSGKSSLLAVAGALTTPDSGTVHVGGRNLLDMKRAEAAKFRRAHIGFVFQSGNLIPSLTAADQLRLVSHLGNSKGRTFRDPIALLEQVGLGHKVDRRPDQLSGGERQRVGIARALVSSPSLLLVDEPTAALDRARSHEIVQLLARETRESRVGTVMVTHDYDVLDYCDRVVEMTDGRLEPR
>NZ_CP054690.1|WP_174914246.1|5700202_5700796_+|TetR/AcrR-family-transcriptional-regulator
MPRISAPTVGEHRAAQQRALLDAAREVLAEGATEIPPFGEVAARAGLARSSMYQYFRSRQHLLEALIEDSFPRWSARVTAEMSDAGGPDQRVLAYVDANLKLVAEGEHAIATALAQIAPGPELDAKSRAMHADLVTPLSDALAELGVPDVAATSELVNAVLHAATRQVERGEDVDHVRRTTAALIRPFVTDLAGRPE
>NZ_CP054690.1|WP_174914248.1|5701012_5702002_+|thioredoxin-disulfide-reductase
MTTPTTVRDLIIVGSGPAGYTAGVYAARAELEPLLFEGTQFGGSLMTTTEVENFPGFREGIMGPDLMDEMREQAKRFGADIRTEDVEELELDGPVKKVVVGGETYYARAVILAMGAAARYLGIPGEERLLGRGVSACATCDGFFFRDQDIVVVGGGDSAMEEATFLTKFARSVTLVHRREEFRASRIMLERAKANEKIRFVTGAEPVEVLGENSVTGLVVRDTVTGEQSTLDVTGMFVAIGHDPRSELVKGQVQLDDAGYVKVQSPTTATSTEGVFAAGDLVDHTYRQAITAAGTGCAAAIDAERWLADQGDITGNTLAAAGEPVAVDA
>NZ_CP054690.1|WP_114720255.1|5702070_5702394_+|thioredoxin
MSNTITINDDSFKQEVLDSDKPVLVDFWATWCGPCKMVAPVLEEIAGEHGDKLTVAKLDIDQNPGAARDFQVMSIPTMILFQGGKPIKTIVGAKGKAALLKDLADVL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3520591-3520617	4	0.852
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP010858	Marinovum algicola DG 898 plasmid pMaD3	34606-34632	4	0.852
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	MN693773	Marine virus AFVG_250M898, complete genome	31561-31587	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	MN693915	Marine virus AFVG_250M899, complete genome	31547-31573	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	MN694236	Marine virus AFVG_250M1060, complete genome	31432-31458	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NC_019789	Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence	363982-364008	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	678727-678753	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1277232-1277258	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1022244-1022270	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1525685-1525711	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1525629-1525655	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1013240-1013266	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	MH834623	Arthrobacter phage Peas, complete genome	5453-5479	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NC_048094	Arthrobacter phage Eileen, complete genome	5453-5479	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_LR594668	Variovorax sp. SRS16 plasmid 3	154951-154977	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	820679-820705	5	0.815
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	902255-902281	6	0.778
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1061673-1061699	6	0.778
NZ_CP054690_1	1.1\|3361109\|27\|NZ_CP054690\|CRISPRCasFinder	3361109-3361135	27	NZ_KF418775	Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence	101481-101507	7	0.741

1. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 4, identity: 0.852

caccggcggccgcgcccggtccaccga	CRISPR spacer
gatcgtcggccgcgcccggtccatcga	Protospacer
 *.** *****************.***

2. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 4, identity: 0.852

caccggcggccgcgcccggtccaccga-	CRISPR spacer
caccggcggccgcgcccgg-ccgctgcg	Protospacer
******************* **.*.*

3. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to MN693773 (Marine virus AFVG_250M898, complete genome) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
cacgggcggccgcgaccggtccacact	Protospacer
*** ********** *********

4. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to MN693915 (Marine virus AFVG_250M899, complete genome) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
cacgggcggccgcgaccggtccacact	Protospacer
*** ********** *********

5. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to MN694236 (Marine virus AFVG_250M1060, complete genome) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
cacgggcggccgcgaccggtccacact	Protospacer
*** ********** *********

6. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NC_019789 (Deinococcus peraridilitoris DSM 19664 plasmid pDEIPE01, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
aaccggcgtccgcggccggtccacccg	Protospacer
 ******* ***** ********** .

7. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
caccggcggccgcggccggtcggtcgg	Protospacer
************** ****** ..**.

8. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
ccgcggcggccgcgctcggtgcaccgg	Protospacer
*  ************.**** *****.

9. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
ccgcggcggccgcgctcggtgcaccgg	Protospacer
*  ************.**** *****.

10. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
ccgcggcggccgcgctcggtgcaccgg	Protospacer
*  ************.**** *****.

11. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
ccgcggcggccgcgctcggtgcaccgg	Protospacer
*  ************.**** *****.

12. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
ccgcggcggccgcgctcggtgcaccgg	Protospacer
*  ************.**** *****.

13. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to MH834623 (Arthrobacter phage Peas, complete genome) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
cttcgacggcggcgcccggtccaccgc	Protospacer
* .**.**** ***************

14. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NC_048094 (Arthrobacter phage Eileen, complete genome) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
cttcgacggcggcgcccggtccaccgc	Protospacer
* .**.**** ***************

15. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_LR594668 (Variovorax sp. SRS16 plasmid 3) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
cgccgcctgccgcgcccggtccacctc	Protospacer
*.*** * *****************

16. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

caccggcggccgcgcccggtccaccga	CRISPR spacer
ccgcggcggccgcgctcggtgcaccgg	Protospacer
*  ************.**** *****.

17. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.778

caccggcggccgcgcccggtccaccga	CRISPR spacer
aggcggaggctgcgcccggtccaccgt	Protospacer
 . *** ***.***************

18. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.778

caccggcggccgcgcccggtccaccga	CRISPR spacer
tttcggcggccgcgcccggttctccgc	Protospacer
. .*****************.* ***

19. spacer 1.1|3361109|27|NZ_CP054690|CRISPRCasFinder matches to NZ_KF418775 (Burkholderia pseudomallei strain MSHR1950 plasmid pBPSE01, complete sequence) position: , mismatch: 7, identity: 0.741

caccggcggccgcgcccggtccaccga	CRISPR spacer
ggcgcgcggccgcgcccggtccacgtt	Protospacer
 .*  *******************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

921278 : 931853

Gordonia_phage(37.5%)

tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174908138.1\|921278_921941_+	hypothetical protein	S5Y4U6	Mycobacterium_phage	3.0e-27	32.9
WP_174908139.1\|922081_922252_+	hypothetical protein	NA	NA	NA	NA
WP_174908141.1\|922282_922615_+	hypothetical protein	NA	NA	NA	NA
WP_174908142.1\|922782_923100_+	hypothetical protein	NA	NA	NA	NA
WP_174908144.1\|923096_923486_+	hypothetical protein	NA	NA	NA	NA
WP_174908146.1\|923513_923912_+	hypothetical protein	A0A1P8VVI0	Erythrobacter_phage	1.4e-08	41.2
WP_174908148.1\|923946_924831_+\|tail	phage tail protein	A0A220NQR1	Corynebacterium_phage	1.9e-53	39.1
WP_174908150.1\|924827_926516_+\|tail	phage tail protein	A0A220NQQ5	Corynebacterium_phage	8.2e-146	46.1
WP_174908152.1\|926557_926989_+	DUF2744 domain-containing protein	A0A166Y257	Gordonia_phage	3.8e-15	40.2
WP_174908154.1\|927454_927775_+	hypothetical protein	NA	NA	NA	NA
WP_174908156.1\|927771_929127_+	hypothetical protein	G9FHL2	Rhodococcus_virus	1.1e-12	25.3
WP_174908158.1\|929139_930564_+	hypothetical protein	A0A1B3AZY3	Gordonia_phage	1.7e-11	33.6
WP_174908160.1\|930705_931098_+	hypothetical protein	NA	NA	NA	NA
WP_174908162.1\|931094_931430_+	hypothetical protein	NA	NA	NA	NA
WP_174914435.1\|931568_931853_+	hypothetical protein	A0A2H4PEY9	Gordonia_phage	3.6e-22	53.8

DBSCAN-SWA_2

3247275 : 3265055

Mycobacterium_phage(30.0%)

transposase,integrase

attL 3232483:3232498|attR 3269178:3269193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3232483:3232498	attL	NA	NA	NA	NA
WP_174910688.1\|3247275_3248670_+\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	3.7e-128	55.9
WP_174910691.1\|3248965_3249385_-	hypothetical protein	NA	NA	NA	NA
WP_174910693.1\|3249807_3250518_+	cutinase family protein	NA	NA	NA	NA
WP_174910696.1\|3251953_3252742_+	hypothetical protein	NA	NA	NA	NA
WP_174910699.1\|3253674_3253944_-	WhiB family transcriptional regulator	A0A0K2FPH8	Mycobacterium_phage	6.7e-10	47.2
WP_174910701.1\|3254205_3254832_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_174910704.1\|3254894_3256415_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	2.1e-47	35.7
WP_174910707.1\|3258150_3259014_+	C40 family peptidase	A0A2P1CIC9	Actinomyces_phage	2.2e-09	38.3
WP_174914757.1\|3259804_3260080_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.0e-21	55.2
WP_174914759.1\|3260974_3262225_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.9e-15	30.6
WP_174910710.1\|3262311_3262632_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	5.9e-21	51.9
WP_174910713.1\|3262628_3263039_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_174910716.1\|3263057_3263378_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q8W6R2	Burkholderia_virus	4.8e-15	51.7
WP_174914761.1\|3263536_3264709_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.1e-32	35.1
WP_174910719.1\|3264716_3265055_+\|transposase	transposase	Q8W6R2	Burkholderia_virus	1.2e-27	56.9
3269178:3269193	attR	NA	NA	NA	NA

DBSCAN-SWA_3

4891556 : 4970894

Gordonia_phage(22.22%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114721502.1\|4891556_4892936_+\|protease	protease	NA	NA	NA	NA
WP_114721500.1\|4893090_4894419_+\|protease	protease	NA	NA	NA	NA
WP_114721498.1\|4894497_4895157_-	hypothetical protein	NA	NA	NA	NA
WP_174913104.1\|4895669_4898870_+	(Fe-S)-binding protein	NA	NA	NA	NA
WP_174913106.1\|4900715_4901504_+	hypothetical protein	NA	NA	NA	NA
WP_174913108.1\|4901598_4903548_-	S9 family peptidase	NA	NA	NA	NA
WP_174913110.1\|4903606_4904017_+	TIGR03668 family PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_114721752.1\|4904189_4905443_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_174913113.1\|4905745_4907035_+	YibE/F family protein	NA	NA	NA	NA
WP_174913116.1\|4907046_4908231_-	Hsp70 family protein	NA	NA	NA	NA
WP_114721484.1\|4908320_4908836_+	low molecular weight phosphatase family protein	NA	NA	NA	NA
WP_114721482.1\|4908803_4910240_-	polysaccharide biosynthesis tyrosine autokinase	A0A1X9I5D6	Streptococcus_phage	1.0e-27	38.6
WP_174913119.1\|4910303_4929077_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.3e-111	24.6
WP_174913121.1\|4929285_4931133_+	DUF4012 domain-containing protein	NA	NA	NA	NA
WP_174913124.1\|4931149_4931734_-	YdcF family protein	NA	NA	NA	NA
WP_174913127.1\|4931802_4932414_-	polysaccharide pyruvyl transferase family protein	A0A1V0SAR6	Catovirus	1.5e-17	30.8
WP_174913129.1\|4932673_4934725_-	acyltransferase	A0A166XZF2	Gordonia_phage	2.0e-53	28.8
WP_174913132.1\|4934721_4936104_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_174913135.1\|4936115_4937378_-	glycosyltransferase	NA	NA	NA	NA
WP_174913138.1\|4937377_4938427_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_174913141.1\|4938493_4939969_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_174913144.1\|4939965_4941009_-	glycosyltransferase	NA	NA	NA	NA
WP_174913147.1\|4941066_4942026_-	glycosyltransferase	NA	NA	NA	NA
WP_174913150.1\|4942166_4943495_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.1e-71	36.5
WP_174913153.1\|4943598_4945155_-	sugar transferase	NA	NA	NA	NA
WP_114721457.1\|4945918_4946506_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	2.1e-77	74.2
WP_174913156.1\|4946982_4948656_-	hypothetical protein	NA	NA	NA	NA
WP_174913159.1\|4948801_4949581_-	hypothetical protein	NA	NA	NA	NA
WP_174913161.1\|4949652_4950829_+\|transposase	IS3 family transposase	A0A1B3AZF8	Gordonia_phage	1.2e-07	40.2
WP_174913164.1\|4951118_4951442_-	hypothetical protein	NA	NA	NA	NA
WP_174913167.1\|4951455_4952301_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.9e-42	39.6
WP_174913170.1\|4953780_4954308_-	hypothetical protein	NA	NA	NA	NA
WP_174913173.1\|4954406_4955564_-	hypothetical protein	NA	NA	NA	NA
WP_174913175.1\|4956298_4957384_-	hypothetical protein	NA	NA	NA	NA
WP_174913178.1\|4958960_4959890_-	barstar family protein	NA	NA	NA	NA
WP_174913181.1\|4960809_4961652_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_174910361.1\|4961905_4963147_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	6.8e-81	44.2
WP_174913184.1\|4963493_4964213_-	hypothetical protein	NA	NA	NA	NA
WP_174913186.1\|4964565_4965426_-	haloalkane dehalogenase	NA	NA	NA	NA
WP_174913189.1\|4965599_4966226_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_174913192.1\|4967942_4968737_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_174913195.1\|4968911_4969298_-\|transposase	transposase	NA	NA	NA	NA
WP_174913198.1\|4969802_4970894_+\|transposase	IS110 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054690

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection