CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	2 crisprs	cas14j	4	1
NZ_CP054657	Lactobacillus reuteri strain AN417 chromosome, complete genome	2 crisprs	csa3,cas14j,cas3,RT,DinG,DEDDh	1	12
NZ_CP054659	Lactobacillus reuteri strain AN417 plasmid pAN417B, complete sequence	0 crisprs	NA	0	0
NZ_CP054661	Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence	1 crisprs	NA	2	0
NZ_CP054660	Lactobacillus reuteri strain AN417 plasmid pAN417C, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054658_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054658_1

29923-30155

TypeV

Consensus_repeat	Method
TTTATTATAACTGTGTGGTTATAACTTGTCAAGTA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP054658_1

>merge|NZ_CP054658|1|29923-30155|CRISPRCasFinder
CATTTTATAACTGTGTGGTTATAATAAGGTTATTTATTAATCGCTTCCCTTTTTGCGATTGCTTGTTGCTCAACTGTGTGACTTTATTATAACTGTGTGGTTATAACTTGTCAAGTAGTAAATTGATTATTTTTTAATCGCCTAGGCTAGTTCGATGACTGCTCTTTATTGCGATTGTTTCAATCAACTTTACGGCTTTTATTATAACTGTGTGGTTATAAATTGTCAAGTCT

>NZ_CP054658|1|1|29923-30155|CRISPRCasFinder
CATTTTATAACTGTGTGGTTATAATAAGGTTATTT	ATTAATCGCTTCCCTTTTTGCGATTGCTTGTTGCTCAACTGTGTGAC
TTTATTATAACTGTGTGGTTATAACTTGTCAAGTA	GTAAATTGATTATTTTTTAATCGCCTAGGCTAGTTCGATGACTGCTCTTTATTGCGATTGTTTCAATCAACTTTACGGCT
TTTATTATAACTGTGTGGTTATAAATTGTCAAGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054658.1\|WP_174892057.1\|28578_29103_-\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP054658.1\|WP_174892054.1\|26586_26868_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892060.1\|38359_39448_+\|replication-protein,-repA	unknown	unknown	gnl\|CDD\|369151
NZ_CP054658.1\|WP_174892061.1\|39795_40521_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_086120079.1\|25980_26307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_016497270.1\|34136_35345_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP054658.1\|WP_142499461.1\|33782_34124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892062.1\|40606_41269_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892058.1\|29167_29371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_142499465.1\|36628_37585_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP054658.1\|WP_174892056.1\|28116_28545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892055.1\|27527_28076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_019253558.1\|27257_27467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892052.1\|25321_25657_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_016497263.1\|41374_41641_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259854
NZ_CP054658.1\|WP_174892059.1\|30497_30719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_072574806.1\|41864_42995_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP054658.1\|WP_174892053.1\|25680_25956_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_019253554.1\|26331_26511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_142499463.1\|36217_36625_-\|replication-associated-protein-RepC	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054658.1\|WP_174892057.1\|28578_29103_-\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	2.08176e-12
NZ_CP054658.1\|WP_016497263.1\|41374_41641_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259854	cd13832, IHF, Integration host factor (IHF) and similar proteins. This subfamily includes integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms. This subfamily also includes the protein Hbb from tick-borne spirochete Borrelia burgdorferi, responsible for causing Lyme disease in humans. Hbb, a homodimer, shows DNA sequence preferences that are related, yet distinct from those of IHF.	1.35114e-18
NZ_CP054658.1\|WP_142499465.1\|36628_37585_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.95107e-43
NZ_CP054658.1\|WP_174892060.1\|38359_39448_+\|replication-protein,-repA	gnl\|CDD\|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	0.00579258
NZ_CP054658.1\|WP_016497270.1\|34136_35345_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	1.89313e-32
NZ_CP054658.1\|WP_072574806.1\|41864_42995_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.68091e-54

>NZ_CP054658.1|WP_174892058.1|29167_29371_-|hypothetical-protein
MMSQKELQKYAEQDYKLVDPEYIKQLEQDSEKLIKFKKYSILAAFIAVIVIAITFPLLRALLTNLVN
>NZ_CP054658.1|WP_174892057.1|28578_29103_-|antirestriction-protein-ArdA
MKINVFVSNLAKYNDGELTGQWTTLPVDDVNKDILDKLDLGGDSKHGYHDEWFISDYEAPFKIGEYDNLYALNELAEALEDYDTIEDVYNALDDREATGCEDVYDFDDEFFDTMFLSKQEVARAVFFGDIHNWLDPYIFINGCGNCESMTEYDYQEMLNNHASEIISQFKEENL
>NZ_CP054658.1|WP_174892056.1|28116_28545_-|hypothetical-protein
MNTELLKQQYNSYRYQMKNRKQIDWNNPNKADIEYNSKIEKQFSEWKKNLTTEEIEFLKNFERSKYHTHEKQQRQKSREMKKNYRTVLNHGAGWYGVNLGELTSDGFSLSTQITWIRGRAKLIEVLKQFNYWTKLNGEILGF
>NZ_CP054658.1|WP_174892055.1|27527_28076_-|hypothetical-protein
MTTKVYRGVIDELLERSWDMGLSFIDQGKFESREELGDLFDEVYPWDVDDEEKSELIQELLDEGYIEPSPDDDEIDCLQIVDDHLYAHYRDIEVMDLCDCLIYDKGEKNFLLGFSAFGWAYIDGAIDLTTGTIGYYNSNEDVYTPVGNLRDEDVEMLNEVVQDNDWSIDYECTVKRENKVVA
>NZ_CP054658.1|WP_019253558.1|27257_27467_-|hypothetical-protein
MNEFKTKASQKKLDKFIELVLTKADKKGIRIASLCNDAIAVFTFNKLWEYDVINQAVVDNYWWCLRIEH
>NZ_CP054658.1|WP_174892054.1|26586_26868_-|hypothetical-protein
MSKLDKMRKYLEQAIEINMQSLEEIKQQPQNQIDFMGGVREWYRCTGCSNYYKEIVQAIKLAEYKYPDSDSVWEKAERIKDEIVREKLSLVQL
>NZ_CP054658.1|WP_019253554.1|26331_26511_-|hypothetical-protein
MLSKKTLGIELKDDATVTGGIDHIGETVQEFIESVGISPVSIEELNEALQECGICKVSQ
>NZ_CP054658.1|WP_086120079.1|25980_26307_-|hypothetical-protein
MALYNSFEELKVDKPELAQELLEVFDKGEWQESNLSVYNTLEDFAYYELTEGCYIDNNLVDQDYHSAPNPIDYIDLEALGEALVESGDESCIYRTEGDQVVTTDWGWS
>NZ_CP054658.1|WP_174892053.1|25680_25956_-|hypothetical-protein
MSWNDLVIEKSRGIVTEKNIDDFNMDFWSAINNEHNSDIPDGEFCEFAIDMWGMKLRGHYVAEWIGDNDYPNETEPTEIQLDHLEIVKVSQ
>NZ_CP054658.1|WP_174892052.1|25321_25657_-|hypothetical-protein
MSYFDANFDEKSFKKELDRVVKLHLKKAASYKLGEPLAIIEAKCAIDLSETEEFHKALIDSLTEKEKSDVDFYSANYFHTMENCMGEKIMNAWNAGKKDKAIDMYKHPLSY
>NZ_CP054658.1|WP_174892059.1|30497_30719_-|hypothetical-protein
MVYKSQIKAKDNYEKNNPLKATYWNRKSGAKSFIYPKSGTKLESAINENIDLYIKDLTEMKIDIDKRLNEIKR
>NZ_CP054658.1|WP_142499461.1|33782_34124_-|hypothetical-protein
MSMKTFTYRYDSNSDIAKWLANQNNKTGSFDAVIRTIVANFGDGDYLNAVLSQVNVNLNGVPKSVQREEKIVDKMVETSEKKPVSKPKPKETKDKNDDDEDGGSTTLDMMSSL
>NZ_CP054658.1|WP_016497270.1|34136_35345_-|ParM/StbA-family-protein
MMKTANDLGYGSVKAIIDDKEIQFPSVFTIEREQDIASPVEFESKSQKDEYMKEFLNHMDVTISSSSIKTPGRFLIGQNAVDQNLPLTHFDINDYAGKAESDYSLILTLSMIAGAAVEQAYEEGKDLSEPLKVNTRMAAALPVKEGSNIETKNMYRERYAGSTHQVTFHNFKNPITVTIEFDKVFVATEGETAQLFISTGKDKDLTKKIKEDFDTRYPEMASLVKAEDLIQAKNVVSIDIGAGTVDIVVIVNGKALVSASYSLSEGYDNALEEALEVLRDKKFNFSSVAELKEFLATKPSPLSRGRYEAVQKVVYAQLEPFCDRIVIEVSRSVRKAGATIEVVYVHGGGSIPMKDQTMLRTKLEDKLKDFNGGQVVPVIWIPKEKAQTLNRDGLEFIVDHAK
>NZ_CP054658.1|WP_142499463.1|36217_36625_-|replication-associated-protein-RepC
MAETLRFNKGDRARKKPKEIEETKPSEPQNRFSITDFNNQSKNQRSEDTKPKRGKGRPRKNKSTKSIRISDEAVDIINAYKQITDQETQDDAVIDAFRKAINDKEITDDKKKVFDLLLEVKGVKDFFYENGPRNN
>NZ_CP054658.1|WP_142499465.1|36628_37585_-|AAA-family-ATPase
MPVLVYANFKGGVGKTTNSVMTAYQLAKKGYKVLVCDLDPQSNATHLLTRTYSRQNNQSKQEFVKEIVKQSRKEKKQLSEEEIDEEISNVYEKREKKELKIEKTMMLALSEEDVESAIVKVMDNLYLLPSDADFTDYPDFLEQTFMPNEDNYKEKRTSYFSKQLSKVKDNYDFVIVDVPPTLSIYTDSAVYAADDIIIVLQTQQDSLDGAIAFFKYLQKIFDKYHAINFDILGILPVLLENRAGLDSQILKDAKATFGKENVFKNIIKHMERLKRFGRVGIADKDAEYGKGDFHDIKVHYVYNKLTDEILDRLKKLED
>NZ_CP054658.1|WP_174892060.1|38359_39448_+|replication-protein,-repA
MLNNKAFLGINLDLLENPKYKNLDSRAMMLYALYADRYSASMNNARLGNTAFVDDMGVFIRFTNELAAKVLHTTVKMISKFRKQLESENLIKIVREGLKGYKIYVYPVQQTPNDVELLLPWKNHTITIQKVTSDWTITSKLEFCKKLKLSSQTIDITVKSQRGYTCDPNGNTSLSHSSLSHVFLNNNGLDDNAHARKENEIQSNQLNKNPYHSLPEKIKSSFVDVFGFITKPMAIELHSLISQSNEDMVNYVITSSKGHKITNAIAYIKAAITKALKRGDKCVQDMINFYNENVKNTFIPSKNTRNSKRYMSEEEANAAITKDEEEMRKNEPEFYAKIMRIKQRSIEKAKRKPAIPIYKLGQ
>NZ_CP054658.1|WP_174892061.1|39795_40521_+|hypothetical-protein
MNNKILTDKYKKYEMPKNMLFIVVDSNVLTKSLSNTELGLYVFLKAQAGRNILKGSTPCLSTTVGKITKMLSWQKGTKAINDMINTLVRANLIVVESCSGKTLNLAFPDDQISLINNGYCKVYAHSINKIIHSINGKQILSYIGFYTCFRSTIFEKTQESCVYDKSPRRLTMLCNLSEASIRNYFQWFRKNNILANFYVRCVRSDELTYNKYIYSDMHDCNKLVEYIKDNRYGSVITEVLE
>NZ_CP054658.1|WP_174892062.1|40606_41269_+|hypothetical-protein
MRKIFDTSLKTKSDRDNHLRELLDTNQLQRRIKSEVNHHQLATHSFSGWFTDRLSNYLFDSSNSGSYRKSDYSFYANETHYWHKKTPSSILLVNDIEEEINNNNFLREQRENKTAYLSKLFDPDNIAEDDYKNFIKAGYCNTDINSLDIENEMILDGMKRMQEIIISACKKDDLHFLKKFNGKNNLNDIALITGVTHQSVSKKLQKICKKSRKNGCQIEF
>NZ_CP054658.1|WP_016497263.1|41374_41641_+|HU-family-DNA-binding-protein
MLNKKDLINIIADQQGVTKKEAGHIIDAFTSGVKKVMKDNQSVNLVGFGKFESVYKEERTQVLGFSGETVTVPAHYAHKAKLSTNIAK
>NZ_CP054658.1|WP_072574806.1|41864_42995_-|IS30-family-transposase
MTHLNDTMSTSLLTTHKKNAHLTKEERVMIANLKSQGLSNRAIGRQLGVNHQTINNELNRGTVRQLRRQKSNGKIYEYSYYIYSYEAGQATYLEHHRHSGRRRLYYSSKQFLRLADQLMLGEFDDHHYSLQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRAHPQAKRCLGPNIAQRPQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGTDAYYRIFKTITSDNGSEFSELTQVHDHVFYADPYSPWERGSNEINNRFLRKEITKGEAINNYSSAQIIATNDWMNHYPRAMFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI

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Crispr_ID: NZ_CP054658_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054658_2

30246-30464

TypeV

Consensus_repeat	Method
TTTATTATAACTGTGTGGTTATAACTTGTCAAGTA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP054658_2

>merge|NZ_CP054658|2|30246-30464|CRISPRCasFinder
TTTATTATAACTGTGTGGTTATAACTTGTCAAGTAGTAAATTGATTATTTTTGATAACCTATAAAGATTACTTACTAATCAACTTTACGGCTTTTATTATAACTGTGTGGTTATAAATTGTCAAGTACTTTTTAGAAAAGTTTTTCAAACTTTAGTTTGCTTTTCTTTTCTTGAGTACGATGGTTATTTTATAACAGTGTGGTTATAAAGTCAATACTT

>NZ_CP054658|2|2|30246-30464|CRISPRCasFinder
TTTATTATAACTGTGTGGTTATAACTTGTCAAGTA	GTAAATTGATTATTTTTGATAACCTATAAAGATTACTTACTAATCAACTTTACGGCT
TTTATTATAACTGTGTGGTTATAAATTGTCAAGTA	CTTTTTAGAAAAGTTTTTCAAACTTTAGTTTGCTTTTCTTTTCTTGAGTACGATGGT
TATTTTATAACAGTGTGGTTATAAAGTCAATACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054658.1\|WP_174892057.1\|28578_29103_-\|antirestriction-protein-ArdA	unknown	unknown	gnl\|CDD\|377800
NZ_CP054658.1\|WP_174892054.1\|26586_26868_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892060.1\|38359_39448_+\|replication-protein,-repA	unknown	unknown	gnl\|CDD\|369151
NZ_CP054658.1\|WP_174892061.1\|39795_40521_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_086120079.1\|25980_26307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_016497270.1\|34136_35345_-\|ParM/StbA-family-protein	unknown	unknown	gnl\|CDD\|212669
NZ_CP054658.1\|WP_142499461.1\|33782_34124_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892062.1\|40606_41269_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892058.1\|29167_29371_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_142499465.1\|36628_37585_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP054658.1\|WP_174892056.1\|28116_28545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892055.1\|27527_28076_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_019253558.1\|27257_27467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_174892052.1\|25321_25657_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_016497263.1\|41374_41641_+\|HU-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|259854
NZ_CP054658.1\|WP_174892059.1\|30497_30719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_072574806.1\|41864_42995_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP054658.1\|WP_174892053.1\|25680_25956_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_019253554.1\|26331_26511_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054658.1\|WP_142499463.1\|36217_36625_-\|replication-associated-protein-RepC	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054658.1\|WP_174892057.1\|28578_29103_-\|antirestriction-protein-ArdA	gnl\|CDD\|377800	pfam07275, ArdA, Antirestriction protein (ArdA). This family consists of several bacterial antirestriction (ArdA) proteins. ArdA functions in bacterial conjugation to allow an unmodified plasmid to evade restriction in the recipient bacterium and yet acquire cognate modification.	2.08176e-12
NZ_CP054658.1\|WP_016497263.1\|41374_41641_+\|HU-family-DNA-binding-protein	gnl\|CDD\|259854	cd13832, IHF, Integration host factor (IHF) and similar proteins. This subfamily includes integration host factor (IHF) and IHF-like domains. IHF is a nucleoid-associated protein (NAP) that binds and sharply bends many DNA targets in a sequence specific manner. It is a heterodimeric protein composed of two highly homologous subunits IHFA (IHF-alpha) and IHFB (IHF-beta). It is known to act as a transcription factor at many gene regulatory regions in E. coli. IHF is an essential cofactor in phage lambda site-specific recombination, having an architectural role during assembly of specialized nucleoprotein structures (snups). IHF is also involved in formation as well as maintenance of bacterial biofilms since it is found in complex with extracellular DNA (eDNA) within the extracellular polymeric substances (EPS) matrix of many biofilms. This subfamily also includes the protein Hbb from tick-borne spirochete Borrelia burgdorferi, responsible for causing Lyme disease in humans. Hbb, a homodimer, shows DNA sequence preferences that are related, yet distinct from those of IHF.	1.35114e-18
NZ_CP054658.1\|WP_142499465.1\|36628_37585_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	4.95107e-43
NZ_CP054658.1\|WP_174892060.1\|38359_39448_+\|replication-protein,-repA	gnl\|CDD\|369151	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus. This of family of predicted proteins represents the N-terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids. Most proteins in this family are bacterial, but archaeal and eukaryotic members are also included.	0.00579258
NZ_CP054658.1\|WP_016497270.1\|34136_35345_-\|ParM/StbA-family-protein	gnl\|CDD\|212669	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins. ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments.	1.89313e-32
NZ_CP054658.1\|WP_072574806.1\|41864_42995_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.68091e-54

>NZ_CP054658.1|WP_174892058.1|29167_29371_-|hypothetical-protein
MMSQKELQKYAEQDYKLVDPEYIKQLEQDSEKLIKFKKYSILAAFIAVIVIAITFPLLRALLTNLVN
>NZ_CP054658.1|WP_174892057.1|28578_29103_-|antirestriction-protein-ArdA
MKINVFVSNLAKYNDGELTGQWTTLPVDDVNKDILDKLDLGGDSKHGYHDEWFISDYEAPFKIGEYDNLYALNELAEALEDYDTIEDVYNALDDREATGCEDVYDFDDEFFDTMFLSKQEVARAVFFGDIHNWLDPYIFINGCGNCESMTEYDYQEMLNNHASEIISQFKEENL
>NZ_CP054658.1|WP_174892056.1|28116_28545_-|hypothetical-protein
MNTELLKQQYNSYRYQMKNRKQIDWNNPNKADIEYNSKIEKQFSEWKKNLTTEEIEFLKNFERSKYHTHEKQQRQKSREMKKNYRTVLNHGAGWYGVNLGELTSDGFSLSTQITWIRGRAKLIEVLKQFNYWTKLNGEILGF
>NZ_CP054658.1|WP_174892055.1|27527_28076_-|hypothetical-protein
MTTKVYRGVIDELLERSWDMGLSFIDQGKFESREELGDLFDEVYPWDVDDEEKSELIQELLDEGYIEPSPDDDEIDCLQIVDDHLYAHYRDIEVMDLCDCLIYDKGEKNFLLGFSAFGWAYIDGAIDLTTGTIGYYNSNEDVYTPVGNLRDEDVEMLNEVVQDNDWSIDYECTVKRENKVVA
>NZ_CP054658.1|WP_019253558.1|27257_27467_-|hypothetical-protein
MNEFKTKASQKKLDKFIELVLTKADKKGIRIASLCNDAIAVFTFNKLWEYDVINQAVVDNYWWCLRIEH
>NZ_CP054658.1|WP_174892054.1|26586_26868_-|hypothetical-protein
MSKLDKMRKYLEQAIEINMQSLEEIKQQPQNQIDFMGGVREWYRCTGCSNYYKEIVQAIKLAEYKYPDSDSVWEKAERIKDEIVREKLSLVQL
>NZ_CP054658.1|WP_019253554.1|26331_26511_-|hypothetical-protein
MLSKKTLGIELKDDATVTGGIDHIGETVQEFIESVGISPVSIEELNEALQECGICKVSQ
>NZ_CP054658.1|WP_086120079.1|25980_26307_-|hypothetical-protein
MALYNSFEELKVDKPELAQELLEVFDKGEWQESNLSVYNTLEDFAYYELTEGCYIDNNLVDQDYHSAPNPIDYIDLEALGEALVESGDESCIYRTEGDQVVTTDWGWS
>NZ_CP054658.1|WP_174892053.1|25680_25956_-|hypothetical-protein
MSWNDLVIEKSRGIVTEKNIDDFNMDFWSAINNEHNSDIPDGEFCEFAIDMWGMKLRGHYVAEWIGDNDYPNETEPTEIQLDHLEIVKVSQ
>NZ_CP054658.1|WP_174892052.1|25321_25657_-|hypothetical-protein
MSYFDANFDEKSFKKELDRVVKLHLKKAASYKLGEPLAIIEAKCAIDLSETEEFHKALIDSLTEKEKSDVDFYSANYFHTMENCMGEKIMNAWNAGKKDKAIDMYKHPLSY
>NZ_CP054658.1|WP_174892059.1|30497_30719_-|hypothetical-protein
MVYKSQIKAKDNYEKNNPLKATYWNRKSGAKSFIYPKSGTKLESAINENIDLYIKDLTEMKIDIDKRLNEIKR
>NZ_CP054658.1|WP_142499461.1|33782_34124_-|hypothetical-protein
MSMKTFTYRYDSNSDIAKWLANQNNKTGSFDAVIRTIVANFGDGDYLNAVLSQVNVNLNGVPKSVQREEKIVDKMVETSEKKPVSKPKPKETKDKNDDDEDGGSTTLDMMSSL
>NZ_CP054658.1|WP_016497270.1|34136_35345_-|ParM/StbA-family-protein
MMKTANDLGYGSVKAIIDDKEIQFPSVFTIEREQDIASPVEFESKSQKDEYMKEFLNHMDVTISSSSIKTPGRFLIGQNAVDQNLPLTHFDINDYAGKAESDYSLILTLSMIAGAAVEQAYEEGKDLSEPLKVNTRMAAALPVKEGSNIETKNMYRERYAGSTHQVTFHNFKNPITVTIEFDKVFVATEGETAQLFISTGKDKDLTKKIKEDFDTRYPEMASLVKAEDLIQAKNVVSIDIGAGTVDIVVIVNGKALVSASYSLSEGYDNALEEALEVLRDKKFNFSSVAELKEFLATKPSPLSRGRYEAVQKVVYAQLEPFCDRIVIEVSRSVRKAGATIEVVYVHGGGSIPMKDQTMLRTKLEDKLKDFNGGQVVPVIWIPKEKAQTLNRDGLEFIVDHAK
>NZ_CP054658.1|WP_142499463.1|36217_36625_-|replication-associated-protein-RepC
MAETLRFNKGDRARKKPKEIEETKPSEPQNRFSITDFNNQSKNQRSEDTKPKRGKGRPRKNKSTKSIRISDEAVDIINAYKQITDQETQDDAVIDAFRKAINDKEITDDKKKVFDLLLEVKGVKDFFYENGPRNN
>NZ_CP054658.1|WP_142499465.1|36628_37585_-|AAA-family-ATPase
MPVLVYANFKGGVGKTTNSVMTAYQLAKKGYKVLVCDLDPQSNATHLLTRTYSRQNNQSKQEFVKEIVKQSRKEKKQLSEEEIDEEISNVYEKREKKELKIEKTMMLALSEEDVESAIVKVMDNLYLLPSDADFTDYPDFLEQTFMPNEDNYKEKRTSYFSKQLSKVKDNYDFVIVDVPPTLSIYTDSAVYAADDIIIVLQTQQDSLDGAIAFFKYLQKIFDKYHAINFDILGILPVLLENRAGLDSQILKDAKATFGKENVFKNIIKHMERLKRFGRVGIADKDAEYGKGDFHDIKVHYVYNKLTDEILDRLKKLED
>NZ_CP054658.1|WP_174892060.1|38359_39448_+|replication-protein,-repA
MLNNKAFLGINLDLLENPKYKNLDSRAMMLYALYADRYSASMNNARLGNTAFVDDMGVFIRFTNELAAKVLHTTVKMISKFRKQLESENLIKIVREGLKGYKIYVYPVQQTPNDVELLLPWKNHTITIQKVTSDWTITSKLEFCKKLKLSSQTIDITVKSQRGYTCDPNGNTSLSHSSLSHVFLNNNGLDDNAHARKENEIQSNQLNKNPYHSLPEKIKSSFVDVFGFITKPMAIELHSLISQSNEDMVNYVITSSKGHKITNAIAYIKAAITKALKRGDKCVQDMINFYNENVKNTFIPSKNTRNSKRYMSEEEANAAITKDEEEMRKNEPEFYAKIMRIKQRSIEKAKRKPAIPIYKLGQ
>NZ_CP054658.1|WP_174892061.1|39795_40521_+|hypothetical-protein
MNNKILTDKYKKYEMPKNMLFIVVDSNVLTKSLSNTELGLYVFLKAQAGRNILKGSTPCLSTTVGKITKMLSWQKGTKAINDMINTLVRANLIVVESCSGKTLNLAFPDDQISLINNGYCKVYAHSINKIIHSINGKQILSYIGFYTCFRSTIFEKTQESCVYDKSPRRLTMLCNLSEASIRNYFQWFRKNNILANFYVRCVRSDELTYNKYIYSDMHDCNKLVEYIKDNRYGSVITEVLE
>NZ_CP054658.1|WP_174892062.1|40606_41269_+|hypothetical-protein
MRKIFDTSLKTKSDRDNHLRELLDTNQLQRRIKSEVNHHQLATHSFSGWFTDRLSNYLFDSSNSGSYRKSDYSFYANETHYWHKKTPSSILLVNDIEEEINNNNFLREQRENKTAYLSKLFDPDNIAEDDYKNFIKAGYCNTDINSLDIENEMILDGMKRMQEIIISACKKDDLHFLKKFNGKNNLNDIALITGVTHQSVSKKLQKICKKSRKNGCQIEF
>NZ_CP054658.1|WP_016497263.1|41374_41641_+|HU-family-DNA-binding-protein
MLNKKDLINIIADQQGVTKKEAGHIIDAFTSGVKKVMKDNQSVNLVGFGKFESVYKEERTQVLGFSGETVTVPAHYAHKAKLSTNIAK
>NZ_CP054658.1|WP_072574806.1|41864_42995_-|IS30-family-transposase
MTHLNDTMSTSLLTTHKKNAHLTKEERVMIANLKSQGLSNRAIGRQLGVNHQTINNELNRGTVRQLRRQKSNGKIYEYSYYIYSYEAGQATYLEHHRHSGRRRLYYSSKQFLRLADQLMLGEFDDHHYSLQAVIYKARDLMNDGTLIPKSVVTLYQWINEGVLRTSNLDLFEKPKRKHHRAHPQAKRCLGPNIAQRPQTADQRSEIGHWELDTVQGQKNGNDSVVLVMTDRLSRVNITSKIAGKTAHAVNQFFINLRQKMGTDAYYRIFKTITSDNGSEFSELTQVHDHVFYADPYSPWERGSNEINNRFLRKEITKGEAINNYSSAQIIATNDWMNHYPRAMFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054658_1	1.1\|29958\|47\|NZ_CP054658\|CRISPRCasFinder	29958-30004	47	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	29958-30004	0	1.0
NZ_CP054658_1	1.1\|29958\|47\|NZ_CP054658\|CRISPRCasFinder	29958-30004	47	NZ_CP030090	Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence	688-734	0	1.0
NZ_CP054658_2	2.1\|30281\|57\|NZ_CP054658\|CRISPRCasFinder	30281-30337	57	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	30281-30337	0	1.0
NZ_CP054658_2	2.2\|30373\|57\|NZ_CP054658\|CRISPRCasFinder	30373-30429	57	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	30373-30429	0	1.0
NZ_CP054658_2	2.2\|30373\|57\|NZ_CP054658\|CRISPRCasFinder	30373-30429	57	NZ_CP030090	Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence	1011-1067	0	1.0
NZ_CP054658_1	1.2\|30040\|80\|NZ_CP054658\|CRISPRCasFinder	30040-30119	80	NZ_CP054658	Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence	30040-30119	20	0.75

1. spacer 1.1|29958|47|NZ_CP054658|CRISPRCasFinder matches to NZ_CP054658 (Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence) position: , mismatch: 0, identity: 1.0

attaatcgcttccctttttgcgattgcttgttgctcaactgtgtgac	CRISPR spacer
attaatcgcttccctttttgcgattgcttgttgctcaactgtgtgac	Protospacer
***********************************************

2. spacer 1.1|29958|47|NZ_CP054658|CRISPRCasFinder matches to NZ_CP030090 (Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

attaatcgcttccctttttgcgattgcttgttgctcaactgtgtgac	CRISPR spacer
attaatcgcttccctttttgcgattgcttgttgctcaactgtgtgac	Protospacer
***********************************************

3. spacer 2.1|30281|57|NZ_CP054658|CRISPRCasFinder matches to NZ_CP054658 (Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence) position: , mismatch: 0, identity: 1.0

gtaaattgattatttttgataacctataaagattacttactaatcaactttacggct	CRISPR spacer
gtaaattgattatttttgataacctataaagattacttactaatcaactttacggct	Protospacer
*********************************************************

4. spacer 2.2|30373|57|NZ_CP054658|CRISPRCasFinder matches to NZ_CP054658 (Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence) position: , mismatch: 0, identity: 1.0

ctttttagaaaagtttttcaaactttagtttgcttttcttttcttgagtacgatggt	CRISPR spacer
ctttttagaaaagtttttcaaactttagtttgcttttcttttcttgagtacgatggt	Protospacer
*********************************************************

5. spacer 2.2|30373|57|NZ_CP054658|CRISPRCasFinder matches to NZ_CP030090 (Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctttttagaaaagtttttcaaactttagtttgcttttcttttcttgagtacgatggt	CRISPR spacer
ctttttagaaaagtttttcaaactttagtttgcttttcttttcttgagtacgatggt	Protospacer
*********************************************************

6. spacer 1.2|30040|80|NZ_CP054658|CRISPRCasFinder matches to NZ_CP054658 (Lactobacillus reuteri strain AN417 plasmid pAN417A, complete sequence) position: , mismatch: 20, identity: 0.75

gtaaattgattattttttaatcgcctaggctagttcgatgactgctctttattgcgattg	CRISPR spacer
gtaaattgattattttttaatcgcctaggctagttcgatgactgctctttattgcgattg	Protospacer
************************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7739 : 51913

Bacillus_phage(23.53%)

integrase,transposase

attL 11169:11185|attR 53675:53691

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174892037.1\|7739_8333_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	1.9e-17	32.2
WP_086132079.1\|8515_9544_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_174892038.1\|9946_10540_-	LysM peptidoglycan-binding domain-containing protein	A0A249XZV3	Enterococcus_phage	9.2e-28	50.5
WP_063164136.1\|10676_11645_+\|transposase	IS30 family transposase	NA	NA	NA	NA
11169:11185	attL	NA	NA	NA	NA
WP_174892039.1\|11719_13429_+	hypothetical protein	NA	NA	NA	NA
WP_174892040.1\|13618_14098_+	hypothetical protein	NA	NA	NA	NA
WP_174892041.1\|14210_15446_-	hypothetical protein	NA	NA	NA	NA
WP_174892070.1\|15540_16479_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_174892042.1\|16728_17979_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	2.1e-58	37.0
WP_174892043.1\|18026_18509_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	4.5e-33	53.0
WP_174892044.1\|18692_19040_-	type II toxin-antitoxin system PemK/MazF family toxin	Q708N9	Streptococcus_phage	1.7e-05	46.8
WP_142499496.1\|19195_19546_-	hypothetical protein	NA	NA	NA	NA
WP_010011610.1\|19624_20503_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_003688751.1\|20526_20814_-\|transposase	transposase	NA	NA	NA	NA
WP_087356023.1\|21114_21444_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_174892045.1\|21433_21694_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_174892046.1\|22082_22382_-	hypothetical protein	NA	NA	NA	NA
WP_174892047.1\|22411_22699_-	hypothetical protein	NA	NA	NA	NA
WP_174892048.1\|22740_22977_-	hypothetical protein	NA	NA	NA	NA
WP_072574785.1\|23015_23243_-	hypothetical protein	NA	NA	NA	NA
WP_170090834.1\|23272_23752_-	hypothetical protein	NA	NA	NA	NA
WP_174892049.1\|23771_23945_-	hypothetical protein	NA	NA	NA	NA
WP_079376332.1\|23976_24186_-	hypothetical protein	NA	NA	NA	NA
WP_174892050.1\|24191_24374_-	hypothetical protein	NA	NA	NA	NA
WP_174892051.1\|24399_25257_-	hypothetical protein	NA	NA	NA	NA
WP_174892052.1\|25321_25657_-	hypothetical protein	NA	NA	NA	NA
WP_174892053.1\|25680_25956_-	hypothetical protein	NA	NA	NA	NA
WP_086120079.1\|25980_26307_-	hypothetical protein	NA	NA	NA	NA
WP_019253554.1\|26331_26511_-	hypothetical protein	NA	NA	NA	NA
WP_174892054.1\|26586_26868_-	hypothetical protein	NA	NA	NA	NA
WP_019253558.1\|27257_27467_-	hypothetical protein	NA	NA	NA	NA
WP_174892055.1\|27527_28076_-	hypothetical protein	A0A0A7NU68	Lactobacillus_phage	2.0e-61	65.9
WP_174892056.1\|28116_28545_-	hypothetical protein	NA	NA	NA	NA
WP_174892057.1\|28578_29103_-	antirestriction protein ArdA	A0A142F1K6	Bacillus_phage	1.2e-10	28.8
WP_174892058.1\|29167_29371_-	hypothetical protein	NA	NA	NA	NA
WP_174892059.1\|30497_30719_-	hypothetical protein	D2KRD0	Lactobacillus_phage	3.1e-05	40.3
WP_142499461.1\|33782_34124_-	hypothetical protein	NA	NA	NA	NA
WP_016497270.1\|34136_35345_-	ParM/StbA family protein	NA	NA	NA	NA
WP_142499463.1\|36217_36625_-	replication-associated protein RepC	NA	NA	NA	NA
WP_142499465.1\|36628_37585_-	AAA family ATPase	F0PIG8	Enterococcus_phage	3.9e-44	36.2
WP_174892060.1\|38359_39448_+	replication protein, repA	NA	NA	NA	NA
WP_174892061.1\|39795_40521_+	hypothetical protein	NA	NA	NA	NA
WP_174892062.1\|40606_41269_+	hypothetical protein	NA	NA	NA	NA
WP_016497263.1\|41374_41641_+	HU family DNA-binding protein	A0A075E147	Dickeya_phage	2.0e-06	35.3
WP_072574806.1\|41864_42995_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	6.7e-35	31.3
WP_174892063.1\|43291_44257_+\|transposase	IS30 family transposase	H7BW47	unidentified_phage	9.5e-14	30.7
WP_174892064.1\|44304_44466_-	hypothetical protein	NA	NA	NA	NA
WP_174892065.1\|44462_44870_-\|integrase	tyrosine-type recombinase/integrase	D2XR58	Bacillus_phage	4.0e-06	29.9
WP_102816977.1\|44866_45226_-	hypothetical protein	NA	NA	NA	NA
WP_016058040.1\|45368_45830_-	GNAT family N-acetyltransferase	E9LUK4	Lactobacillus_phage	1.7e-82	100.0
WP_174892066.1\|45929_46412_-	helix-turn-helix domain-containing protein	H7BUM7	unidentified_phage	9.5e-07	41.5
WP_086142426.1\|46848_48000_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_056936359.1\|48945_49923_-	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_086136127.1\|50082_50511_-	hypothetical protein	NA	NA	NA	NA
WP_174892067.1\|50989_51913_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.1e-50	41.0
53675:53691	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054657

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054657_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054657_1

995345-995460

Orphan

Consensus_repeat	Method
AATACTTCTACAAGTGAATCAACAACTAGTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054657_1

>merge|NZ_CP054657|1|995345-995460|CRISPRCasFinder
AGTACATCGACTAGTCAATCGAATACTTCTACAAGTGAATCAACAACTAGTACCTCAAATGTTAGTTCTGGTTCAACATCAAGTAGTACCTCAACCAGCGAATCAAATACTTCTAC

>NZ_CP054657|1|1|995345-995460|CRISPRCasFinder
AGTACATCGACTAGTCAATCGAATACTTCTAC	AAGTGAATCAACAACTAGTACCTCAAATGTTAGTTCTGGTTCAACATCAAGT
AGTACCTCAACCAGCGAATCAAATACTTCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054657.1\|WP_016496747.1\|989329_991678_+\|accessory-Sec-system-translocase-SecA2	unknown	unknown	gnl\|CDD\|163426
NZ_CP054657.1\|WP_174891917.1\|999499_1000903_-\|C69-family-dipeptidase	unknown	unknown	gnl\|CDD\|335383
NZ_CP054657.1\|WP_003675575.1\|993223_994549_+\|accessory-Sec-system-glycosylation-chaperone-GtfB	unknown	unknown	gnl\|CDD\|274351
NZ_CP054657.1\|WP_174891920.1\|1004820_1005333_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_063164572.1\|998160_999381_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP054657.1\|WP_142490597.1\|997532_998222_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP054657.1\|WP_003663508.1\|1002953_1003139_+\|4-oxalocrotonate-tautomerase	unknown	unknown	gnl\|CDD\|235013
NZ_CP054657.1\|WP_174891916.1\|991692_993231_+\|accessory-Sec-system-glycosyltransferase-GtfA	unknown	unknown	gnl\|CDD\|131964
NZ_CP054657.1\|WP_124216391.1\|1006717_1007719_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|181811
NZ_CP054657.1\|WP_174891914.1\|984232_985423_+\|accessory-Sec-system-protein-translocase-subunit-SecY2	unknown	unknown	gnl\|CDD\|131966
NZ_CP054657.1\|WP_072574913.1\|986948_988436_+\|accessory-Sec-system-protein-Asp2	unknown	unknown	gnl\|CDD\|274739
NZ_CP054657.1\|WP_003675585.1\|985425_986937_+\|accessory-Sec-system-protein-Asp1	unknown	unknown	gnl\|CDD\|274740
NZ_CP054657.1\|WP_016496743.1\|982375_982600_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_016496748.1\|994541_994739_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_016496755.1\|1005365_1005602_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_063164569.1\|983205_984213_+\|sugar-transferase	unknown	unknown	gnl\|CDD\|236626
NZ_CP054657.1\|WP_142490509.1\|995680_997414_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP054657.1\|WP_174891919.1\|1003273_1004776_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP054657.1\|WP_174891915.1\|988438_989326_+\|accessory-Sec-system-protein-Asp3	unknown	unknown	gnl\|CDD\|379726
NZ_CP054657.1\|WP_174891918.1\|1001041_1002871_+\|monovalent-cation:proton-antiporter-family-protein	unknown	unknown	gnl\|CDD\|366411

Protein	Function_ID	Function_description	E-value
NZ_CP054657.1\|WP_016496747.1\|989329_991678_+\|accessory-Sec-system-translocase-SecA2	gnl\|CDD\|163426	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP054657.1\|WP_174891917.1\|999499_1000903_-\|C69-family-dipeptidase	gnl\|CDD\|335383	pfam03577, Peptidase_C69, Peptidase family C69.	6.77529e-158
NZ_CP054657.1\|WP_003675575.1\|993223_994549_+\|accessory-Sec-system-glycosylation-chaperone-GtfB	gnl\|CDD\|274351	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. [Protein fate, Protein modification and repair].	7.02235e-171
NZ_CP054657.1\|WP_063164572.1\|998160_999381_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.53696e-36
NZ_CP054657.1\|WP_003663508.1\|1002953_1003139_+\|4-oxalocrotonate-tautomerase	gnl\|CDD\|235013	PRK02220, PRK02220, 4-oxalocrotonate tautomerase; Provisional.	5.59469e-28
NZ_CP054657.1\|WP_174891916.1\|991692_993231_+\|accessory-Sec-system-glycosyltransferase-GtfA	gnl\|CDD\|131964	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system. [Protein fate, Protein modification and repair].	0
NZ_CP054657.1\|WP_124216391.1\|1006717_1007719_+\|LCP-family-protein	gnl\|CDD\|181811	PRK09379, PRK09379, LytR family transcriptional regulator.	1.15614e-82
NZ_CP054657.1\|WP_174891914.1\|984232_985423_+\|accessory-Sec-system-protein-translocase-subunit-SecY2	gnl\|CDD\|131966	TIGR02920, preprotein_translocase_SecY_family_protein, accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB. [Protein fate, Protein and peptide secretion and trafficking].	9.20098e-72
NZ_CP054657.1\|WP_003675585.1\|985425_986937_+\|accessory-Sec-system-protein-Asp1	gnl\|CDD\|274740	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	7.75815e-102
NZ_CP054657.1\|WP_142490597.1\|997532_998222_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	7.72688e-66
NZ_CP054657.1\|WP_072574913.1\|986948_988436_+\|accessory-Sec-system-protein-Asp2	gnl\|CDD\|274739	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	3.40011e-146
NZ_CP054657.1\|WP_063164569.1\|983205_984213_+\|sugar-transferase	gnl\|CDD\|236626	PRK09814, PRK09814, sugar transferase.	5.06793e-124
NZ_CP054657.1\|WP_142490509.1\|995680_997414_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	5.07724e-14
NZ_CP054657.1\|WP_174891919.1\|1003273_1004776_+\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP054657.1\|WP_174891915.1\|988438_989326_+\|accessory-Sec-system-protein-Asp3	gnl\|CDD\|379726	pfam15432, Sec-ASP3, Accessory Sec secretory system ASP3. Sec-ASP3 is family of bacterial proteins involved in the Sec secretory system. The family forms part of the accessory SecA2/SecY2 system specifically required to export GspB, a serine-rich repeat cell-wall glycoprotein adhesin encoded upstream in the same operon.	2.99282e-38
NZ_CP054657.1\|WP_174891918.1\|1001041_1002871_+\|monovalent-cation:proton-antiporter-family-protein	gnl\|CDD\|366411	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family. Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family.	6.77781e-47

>NZ_CP054657.1|WP_016496748.1|994541_994739_+|hypothetical-protein
MNKKEDHDQPQSLIQQDALKRLEKVEEEKRQPYKKKKEPINFRSVLMTLLLILVVGMMLIGYFIR
>NZ_CP054657.1|WP_003675575.1|993223_994549_+|accessory-Sec-system-glycosylation-chaperone-GtfB
MLNLFDNFDQASFDFLRSQRTAQIKIPTVVINDDGFLPPEVESPIKYWGNYNVNKKPLYFDHLSLPRYWRILSTAAQGHIYDLDKKRADIIYQATDNTRQVKEVRWLNNNGKVSWIDHYNRYGYRFAQTYYRNEQPAWRKYYDKKNRVFLEWNLIAGDFFLDVDGGYHFPSLIELVKYYLQTRHFKLDHIFYNTLNQGLSVSLNLPADGSDTLFWHEPLSGDELPGNMKFLMENSTRTKHIIFQRYTDWQRIGANLKNNHVDFGFLGTIYPHPRANQLRPQALILTNSDEIVELSTLIKNLPNIKFHIAAVTEMSGKLLAYQQYENVELYPNVSSARVKQLIADCDIYLDINRQNEILDAVRGAFEQNMLIVGFDETLHEPQFVTPQNMFKVNEAQKMSKHIMAALLKPALMKELIDTQRQLASEVSVQDYQRMIGALQSE
>NZ_CP054657.1|WP_174891916.1|991692_993231_+|accessory-Sec-system-glycosyltransferase-GtfA
MTVYNINLGIGWASSGVEYAQSYRAQAFRNLNISAKFVFSDLILGNNIADLTANLGFNADQIIWLYNFFTDIKIAPSTFLLDTFVEQNHLEQRNFSLLPNNGTKELQYKSEEEKLTIVPRYNNREKQTIDQVTYIFNNRLIKRDFYSYTKYATEYYSGEEKDNQVIFREFYNENGTIAYTQHLDGDGHELFEFPDQNYYSKTDLYREMLRKFNFKADDIIILDRMDEDKQLVNGQLIFEHHLPAKLVIPVHADHYDKHYTNDHQVLWNNFYEYQFMHYQDVAAYVVATDRQRDLLASQQKHFNHAKPQINTIPVGSLEHLVKPKGTRKKHSLITASRLANEKHIDWVIEATVAAHKIVSDLTLDIYGEGGERSRLQNLITKNNADSYIKLMGQHDLKDVYQKYETYIAGSTSEGFGLSLMEAVGSGLSMIGFDVPYGNQTFIVDQQNGYLLPYTEDWSNSRKEQLLADAIVKNFTEADLASFHEKSYSLAESYLTKNVAKQWQQLIGELQHA
>NZ_CP054657.1|WP_016496747.1|989329_991678_+|accessory-Sec-system-translocase-SecA2
MTYPNFRLQKVKHTLAKVNALTAEMRGMSDEELKHQTVLLKKELANGKTVDDILPRAFATIREADYRILGMFPYDVQVMGAIVLNQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLLTPNGYLAQRDKEQLQPVYEWLGLTVSLGFTNSDQKPLPQVKREWYNSDIVYTTASSLAFDYLFNNLATRIDDQYLRPFNYVIIDEVDAILLDEATSPFVVSSTPMVQSNLYRLTDDFIHTLQPEIDYKLNEDRTAVWLTLHGIRQAQRFFRITDLFTNRYREVYRHIILALRAHFIMENGHDYLVSEGKVVLLDEANGRLKRGVKVSTGLHQAIEAKEQVDLTPNQQVAASITFPSLFGLFNKIAGMSGTVKSDEQEFFEVYKMRVIQIPTRKKVIRRDYPEQIYLTTRQKLIHALDETIELHKAGRPVLLVAGSVENSEIISELLLDQGIPHNVLNAFNVAREADIVKDAGQRGAVTVATNMAGRGTDIKLGAGVKELGGLAVIGTEMLPTRVKLQLAGRAGRQGDPGSSKFYISLEDSYLAKNSTKRFKNYYRQLQKKKTDKQLRSPRLKMSIAMLNDRVAANQQMARSNVNKNEIALKIQRKYLYDRRDQLMRTAHLETEVGKWLSRGISLYLDKKVKWNALELRHLMNQHFTYDVVDLPDNLELDHKKIQKYLEQFCQKELEQKAKVLINSEQLNQFYRSALLNALDSSWTDQMAYLSKLSVIVQPWTTAQRNPKFMYQEKAYQAFEKMFDTVAKKVVDNLMLSTIRLNKDNNLIVHFN
>NZ_CP054657.1|WP_174891915.1|988438_989326_+|accessory-Sec-system-protein-Asp3
MQQFINQGYWESSNAYSAGSDIKINSDYSVLFHNSLMAPGKVIMSWNSVNSYQATKLVPQLPILRNNHKYRLSVNAKATPIYSLIIRLTFFDAQEHEIDHVEFQQRSIEFVYPPEAVQYRLELINNGLTDLTFQRFEICDADLPVSVHEDVWFHEPINEDVKGKLNLLLIADNKRVRKTYPDLKKYEDYKMQPISVAWQSSADVVAILKQWLISNRIYDANVISTNPKLDQVVLELKMELSTINAVVTNQTDPQSQIADVIYPLLPPTTWSSPVLVNPDWPIIFSVIQEINSKEG
>NZ_CP054657.1|WP_072574913.1|986948_988436_+|accessory-Sec-system-protein-Asp2
MNVLQLGAQNWADKYKIPNEITWNYNTYPQAGIKRFDLVIITEGVQLEDNLWSKLQWQVPPYCVLYSPFAERDLNEAGLNFIKCQEARQIVEEPQELINQLPIRFFQGQSGIRFAPTKLLLNDPVGTFVDGGHLTLKIEADEWTNLGSYQQNVYIDPQRLLKFSLEYSQKSNIKVRLRVFVSPNGGDGNSKDQYLLDFSRNNEEQELPIGLEDAPRFASVSVEVLGKGKLTLGTLHARWSRRDYGEFLAGGKRLIAPVNGEDIPYYFNPGDLRPPLHVYFSGARGLEGFEAYPLFRRNHTPALLFTDPRLAVGQFYTGEAIESQIKDTIIVTLKKLGFDRQQLVLNGISMGTYPAIKLGAQLSPYAINVAKPTVNLGQVALRARLERPDEFDTIFDIDRQLVASLTSEQLEQLDMDFWNLMNQNDLTKTRIYVGYMKNDDYDNLAMKKMQENSAIQSAQLFVSKGFPGRHNDNRAVVQWFVSRLTEINNAFGRGE
>NZ_CP054657.1|WP_003675585.1|985425_986937_+|accessory-Sec-system-protein-Asp1
MDYLVPAWHELLEGWSYTIPKLEFDDAVSHIKVFQTNQKPFSLIITDYQPQLSTKLNQLTISPTQIFSTFDYLQGVHHVDSQIIDYRDFNWPTGAYYNFTNFRVIVMVKENPYAKVTFDTQGKILWVDYLEKDKISRRLLLDSRGFVSREELFENGQPYQYIYYDEQGYWRFKHDVKSDRVEINKRFSELTDYLHYEHLNDLLEEIITKYVLSKFDINQDNLIVTLDDQAVIDQKNYLPYQPIFSLSRWHRYHESLDELKSQELNLVADNNETKNNIKKQSNIDATIIPLFQSRFNLGHSQRSDQEQIGLFIESMTKDEVDKVLELLYQRLLKSPDAIALTVMSYSTEKLQQAQQALENLKQTHQGEFILASEEQNEVEEILTKQIGIPKLTIDTKRISTPAEAGRQLDSLRILIDWGNQLDEFLQISAISTGIPQIYRQPNSQIKNYQNGLICPQISDINKGLNYYLGNLKHWNEALIYNVQLMNQLSAAELQKKWEKVLTK
>NZ_CP054657.1|WP_174891914.1|984232_985423_+|accessory-Sec-system-protein-translocase-subunit-SecY2
MTQKIQLNNLLKRLGATFFILIIYILGCTISLPLVNISTTFHRVLANSSLGIMSFMSGGNLQRLSLFSVGLNPLMISMMIIQLLTMMRLFYFDTFSIKQTMRIQQWLTLIFAIIQSLALTLMLNLTTNLLTSLAVTLMLTAGSLFVVWLGNMNTRFGIGGTITIILFNIISGTLPNLLSSIGKIVGQSYGILWLALIVLASFGLLIFWISFNRAYYPIKMVDTMMSSHDKPIILPLGLNMGAMMTYMVGMSLLMIPTLLANILGPQSLFANPYFEIVLSGILAFALFYFFTFVQFDPKEQAKTMLHNNNYIIGIRPGEPTKKYLQHLVIHVSFFGALLNTIQLSFGLLGSRILGNFAGLAILPMNIIMIVMFMQGIKDQLLMLLFPLRYARLIKDE
>NZ_CP054657.1|WP_063164569.1|983205_984213_+|sugar-transferase
MTVHITNLYGQSFQSTAQIAQNQIAKIGRELGFNELGIYSYNWPDEPSVALDTRFDGIIASVSNNDTVIFQSPTWNSIEWDQAFIDHLAPYNVKKIIFIHDIIPLMFESNRYLLPQFIDYYNKADLIIAPSQPMVDFLRANGLTVEKVVLQHMWDHCASVDFTVTPQNTGVINFAGNLEKFQLVGHWHYPDNPLYAFAKVIDVEPTDNIKFMGWQSDPVLLSKLRHNGGFGLVWSNEPYCKNYMHLNANHKLSTYLAAGLPVIVNENIAESETILRKGLGIVADNLDEAIEKVQGMDDQSYNEMVQRVDDFARLIREGYFAKKALTEAVFKLYYQ
>NZ_CP054657.1|WP_016496743.1|982375_982600_+|LPXTG-cell-wall-anchor-domain-containing-protein
MNNGNGLKTTNISESGNQTIMNLNETNSVNSQKPSQQNEKLPQTGNEKHSTAKLLSLISLEAILLLLISKKKKG
>NZ_CP054657.1|WP_142490509.1|995680_997414_+|LPXTG-cell-wall-anchor-domain-containing-protein
MSTSTASQAQSSTSTSTSTTNDLTASQTVAKARALTLRLFAALNTTVNTYGTPIISSDGLSVTYYGKGTDSVSNNPIYYIVKVTNNLNGTVSFTITYTLKDPITGEISAGPSSRSDVYHFGNSIYAKTATFNMGSGYSNGTLTSVVTLDANGNTVYNMTSGVHLYNTSGNSYDFYDLDAQGQGLTYQNINSSTRYNNYGKNKVISEQITVTFNYNESSSNLNYTIAPYVSYTSGLNEGNYFTNSVSGTEPSKSNSTSVSQSTSKQQSTSASRSTSNSQSVSTSKQVSQSNSQSISASQAASTSLSQSASKSASVSASESTSASVSASESASTSLSASESTSASVSASESTSASLSSSESASSSASASASISSSLSTSASVSASISGSNSTSDSPVNPQPDNPSTSISGSESMSISTSESISVSASGSTSISDSGSTSLSASDSTSTSISGSSSNGSESTSGSQSPVTPFPDNSGSTSMSTNGSGNDSISLSLSITNSTNTSSLENTSASVTDKHMTVDLTAQNSVENGNANKPSQQNKKLPQTGNASQTTAELLGLMSLEAVLLLLIAKKKKHNEDK
>NZ_CP054657.1|WP_142490597.1|997532_998222_-|ATP-binding-protein
MKKLTSICLIISVFTIGLENRMNQYQKLVDKEIAYQQQKSLKRRIKRARFPIIKLLSDFDYQFQPSINQQQIAEFATMSFLDNQENIVFIGSPGVGKTHLSIGLGIEACRQDVRTLFINCHELILRLKAAQGKQHLERVMRRYERYDLLIIDELGYLPISAEEAKLLFQLINGRYERKSTIITTNVPLSSWGAVLHSTATAEAILDRLVYHSHVIKIKGKSYRLASVNS
>NZ_CP054657.1|WP_063164572.1|998160_999381_-|IS21-family-transposase
MRKDVYERMRYFVVEKIKPNYSAIARQYGVDPRTVKTAYLRAQNGETIVRNQRKRRSKLDGFQDIIKDKYTAGCSARAIYDFIVEKGFTGKYTIVKDYCRHFRKAQTKKATIRVEHTMGLSAQVDWKEQVTMTDQNGVPHTFSIFLYVLPYSKFKFLKLTLDQKQDTLFKCLFEAFKATGGIPKEIWFDNMSTVVDHKLSDFHHHRFNERFLSFSHDAGFHPIACRPFRPQTKGCVEALARTMGRLKPYDGEFSTINDLNDIVDRLAKRLNHEKSQSNNQKPVELWTKEKEHFRSLNHDLVRYFHSDQTRKVSRDSMIRFQNHQYSVSPNYIGKEVEIKLTPDDKTIHIFYQGVEIQKHDLTNKQFNYDLHDKHAILKSDLMADKTDEEINQYMLNNLSIYDRIGE
>NZ_CP054657.1|WP_174891917.1|999499_1000903_-|C69-family-dipeptidase
MGNKLTACTSILIGKDASIDGTIMIGRNEDAKAAWPKHMVVHQRGEMPNHFISKDTRLELDLPEESARYTATPEWTDKDGLFEEDGINEYDVAMSATESAYSNALVLGYDPLVENGLNEEAMITVVLPYVKTAREGVQRLGNLIAKYGTGETNGVLFADNDEAWYFETGAGHYWVAQRIPDDSYAVVANQLAIQEIDFNDSANFMFHPGIQEFVEKHDLNPDPATFNFRKIFGTADRSDAIYSEPRVWAGHQMFSPRQATDETPESTELPFIMKPDHKLSIFDAQNYLSNHYEGTEFDPLGHGEHAHKYRPISLAKTQESHILQMNRPGANIHWLAMGVAAESTYVPFFNGITDTPAPYKRGKLPAQLNSAYWIFKHTSVLVDSHLHDFLPLLRDVQKERNAAAIKMIAETDRRLPSLKGEARATFLTRQSDDYATDTLNAYKKLSLELITKMTDYCELNFNTDENL
>NZ_CP054657.1|WP_174891918.1|1001041_1002871_+|monovalent-cation:proton-antiporter-family-protein
MQQLSLLIVMLAALIIPIIMARFKVSSIPTAIAEIITGIILGKSFLNIVSPNWTLNMMSSMGVIMLMFLSGMEINFDLFRKTPGKKRDSKSPVVMASQAFGLIIAAALIIAIVISRLGLFKDVLLATIIFSTVALGVVIATLKEKDILQKPVGQTILLTAVLGEVVPMLALTFYASINGGNARRLWLIVLLFLAAFILLRRFKQPYVWFNKISKSTTQLDVRLAFFLIFALVTIAETVGAENILGAFLAGMVMKLLQPSETTEDRLNSIGYGFLIPFFFIMTGDRLDLKNLFANHQALALIPILVIGFILAKLPTMIIYRRRFKLRNSFAGSFLVATTITLVLPTLEVARNLHAITQAQSAAFTLAAVIVCIIAPIAFNSTYKLEKADLIKQKVNFIGTNTLTVPISQQLYKNWYDVRMVTDNENNFKIYNSQVKHLEYMPKLDAESLEQGGYFDCDIIVVGFLNDHKSARLAQIAKEHGVKRVIASQNNPRLDPKDVSALREKGIEIFNSFNVQSSVLRALIESPLILRMLTDTEAGLYEATLLNSRYSGRELHTLPFVNKITISRIFRNRKPIDPHGDTVLEYGDHILFTGDRQAAEEVRENLQGRK
>NZ_CP054657.1|WP_003663508.1|1002953_1003139_+|4-oxalocrotonate-tautomerase
MPLVHIDLIEGRTDEQLKALVKDVTAAISKDANVPAERVHIVLNEMRKDRYSVAGKMVSDK
>NZ_CP054657.1|WP_174891919.1|1003273_1004776_+|glycerol-kinase-GlpK
MSEQQYIMAIDQGTTSSRAIIFDHDGNKVAISQQEFPQYFPQPGWVEHDPLEIWDSVQSVISNVMIKSQIKPYKIAAIGITNQRETTVIWDRHTGKPIYNAIVWQSKQTSDIAEQLIKDGYKEMIHQKTGLVIDSYFAATKIKWILDHVPGAREKAAKGDLMFGTIDTWLLWNLSGRRVHATDVTNASRTMLFNIHTLDWDQDILDLLDIPQSLLPAVKPSSAIYGYTGDYHFYGVQIPIAGIAGDQQAALFGQAAYDKGSIKNTYGTGAFIVMNTGLKPTLSDNGLLTTIAYGLDGQTHYALEGSIFVAGSAVQWLRDGLKMFNKASESEQMAVDAKTTGGVYVVPAFTGLGAPYWDQEVRGAMFGLTRGTERGHIIRATLEAIAYQTKDVVDTMVKDTQLPLTALTVNGGASRNNFMMQFQADILQTPIKRAAMEETTALGAAFLAGLAVDFWEDQDELRKLSRIGDQFDPQMDPQEAADLYRGWQRAIAAAQFYGKD
>NZ_CP054657.1|WP_174891920.1|1004820_1005333_+|hypothetical-protein
MREMKMKTPVQMTDDLARFIKENREDAAYPHESLYVDLLEQWKVLSRYQLEYADKESKRLYNAYWNSMARWYEVFNNERNHLLEPTAVPSEDLMDFYAGLIEDLMDHVLSLVPPSPHSTVIKLTDFRVLLSNELQKITQLDLEIQGPIDFAMIMDYWKMLGESLDRESIK
>NZ_CP054657.1|WP_016496755.1|1005365_1005602_-|hypothetical-protein
MEKHEIDRQAKWLHIKYDGEDRDDECVNELSIYQNADESELQMLVSNIDFDNISHDNTFALTKEDAKVLIDYLQKWIN
>NZ_CP054657.1|WP_124216391.1|1006717_1007719_+|LCP-family-protein
MSDENNRPLNNNDDGMQQPEHHHHHHRHHRRHRGWKIFWSVVGVLVLVALFFAGMAWHNLKSTTDDMYSSAGATKSRDAQKVLDQKKPVSILLLGTDTGALGRDYKGRTDTIMVMTLNPKTKTTTIVSLPRDMKVNLPGYPQYSPAKINAAYTYGGVKESINTIQDHFNIPIDYYVLVNMGGLEKAINQVGGVDVKSPLTFDYEGYHFEKGETYHMNGKKALQFSRMRYDDPDGDYGRQQRQRLVITALLKKSVSYKTVLNRSFLRSVSDNSQTDLTFNDMMRLAQSYRDTNEHIVQDHAQGRGQNEDGQAFEVVPTSEQQRITNLLQNSLKN

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Crispr_ID: NZ_CP054657_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054657_2

1811446-1811852

Orphan

Consensus_repeat	Method
GATGGGTTAGTAGGTGTTGTAGG	CRISPRCasFinder

7 spacers

The CRISPR arrays of NZ_CP054657_2

>merge|NZ_CP054657|2|1811446-1811852|CRISPRCasFinder
GCAGGTGTGGTTGGTGTTGTTGGTTGGTCACCCTTGTTATCTGTTGGCTTAGATGGTGTTACAGGGGTATCAGTGCCCTTGTTGCCGTTGTCTGGCTTTGCAGGGTTAGTAGGAGTTACAGGCTTATTACTCTTATTGTCGTCTGGCTTAGTAGGCGTTGTAGGGTTAGTAGGGGCTGTAGGATTAGTTGGCTTGTCATCACCCTTTGATGGGTTAGTAGGTGTTGTAGATTGATCACCCTTATTGTCGTCCTTACCAGTATTTGGCTTAGTAGGATTTGTAGGAGTGGTTGGGTTAGTTGGCTTATCGTCACCCTTTGATGGGTTAGTAGGTGTTGTAGGTTGATTACCCTTGTTGTTGTCATCCTTGCCAGTGTTAGGCTTAGATGGGTTAGTAGGGGTTGTAGG

>NZ_CP054657|2|2|1811446-1811852|CRISPRCasFinder
GCAGGTGTGGTTGGTGTTGTTGG	TTGGTCACCCTTGTTATCT
GTTGGCTTAGATGGTGTTACAGG	GGTATCAGTGCCCTTGTTGCCGTTGTCTGGCTTT
GCAGGGTTAGTAGGAGTTACAGG	CTTATTACTCTTATTGTCG
TCTGGCTTAGTAGGCGTTGTAGG	GTTAGTAGGGGCTGTAGGATTAGTTGGCTTGTCATCACCCTTT
GATGGGTTAGTAGGTGTTGTAGA	TTGATCACCCTTATTGTCGTCCTTACCAGTA
TTTGGCTTAGTAGGATTTGTAGG	AGTGGTTGGGTTAGTTGGCTTATCGTCACCCTTT
GATGGGTTAGTAGGTGTTGTAGG	TTGATTACCCTTGTTGTTGTCATCCTTGCCAGTGTTAGGCTTA
GATGGGTTAGTAGGGGTTGTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054657.1\|WP_003675988.1\|1798045_1798546_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|239312
NZ_CP054657.1\|WP_035162004.1\|1796947_1797277_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185629
NZ_CP054657.1\|WP_174892000.1\|1800602_1802132_+\|IS66-family-transposase	unknown	unknown	gnl\|CDD\|376980
NZ_CP054657.1\|WP_063164274.1\|1828793_1829321_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_003675974.1\|1792854_1794354_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP054657.1\|WP_174892001.1\|1809926_1810895_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP054657.1\|WP_086142274.1\|1827159_1828128_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_035161508.1\|1813573_1813762_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_081120415.1\|1813443_1813584_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP054657.1\|WP_003674673.1\|1832807_1833728_-\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP054657.1\|WP_003674676.1\|1808476_1809889_+\|aryl-sulfate-sulfotransferase	unknown	unknown	gnl\|CDD\|368677
NZ_CP054657.1\|WP_063164273.1\|1828120_1828810_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_063164268.1\|1797389_1797758_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP054657.1\|WP_003674674.1\|1831698_1832700_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_CP054657.1\|WP_016496780.1\|1800001_1800190_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054657.1\|WP_170090766.1\|1830151_1831678_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP054657.1\|WP_174892002.1\|1833818_1835927_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP054657.1\|WP_066036014.1\|1800179_1800536_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_CP054657.1\|WP_063164271.1\|1825918_1826878_-\|beta-galactosidase	unknown	unknown	gnl\|CDD\|214988
NZ_CP054657.1\|WP_172381020.1\|1794566_1795268_-\|DUF3642-domain-containing-protein	unknown	unknown	gnl\|CDD\|371947

Protein	Function_ID	Function_description	E-value
NZ_CP054657.1\|WP_003675988.1\|1798045_1798546_-\|thiol-peroxidase	gnl\|CDD\|239312	cd03014, PRX_Atyp2cys, Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based interface (A-type for alternate), in contrast with the B-type interface of typical 2-cys and 1-cys PRXs.	2.95567e-63
NZ_CP054657.1\|WP_035162004.1\|1796947_1797277_-\|hypothetical-protein	gnl\|CDD\|185629	PTZ00450, PTZ00450, macrophage migration inhibitory factor-like protein; Provisional.	4.16439e-09
NZ_CP054657.1\|WP_174892000.1\|1800602_1802132_+\|IS66-family-transposase	gnl\|CDD\|376980	pfam03050, DDE_Tnp_IS66, Transposase IS66 family. Transposase proteins are necessary for efficient DNA transposition. This family includes IS66 from Agrobacterium tumefaciens.	1.44586e-92
NZ_CP054657.1\|WP_003675974.1\|1792854_1794354_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	2.38271e-152
NZ_CP054657.1\|WP_174892001.1\|1809926_1810895_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	7.85382e-46
NZ_CP054657.1\|WP_066036014.1\|1800179_1800536_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	3.12031e-42
NZ_CP054657.1\|WP_081120415.1\|1813443_1813584_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	5.31789e-12
NZ_CP054657.1\|WP_003674676.1\|1808476_1809889_+\|aryl-sulfate-sulfotransferase	gnl\|CDD\|368677	pfam05935, Arylsulfotrans, Arylsulfotransferase (ASST). This family consists of several bacterial Arylsulfotransferase proteins. Arylsulfotransferase (ASST) transfers a sulfate group from phenolic sulfate esters to a phenolic acceptor substrate.	2.15779e-14
NZ_CP054657.1\|WP_003674673.1\|1832807_1833728_-\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	8.91683e-152
NZ_CP054657.1\|WP_063164268.1\|1797389_1797758_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	6.71063e-27
NZ_CP054657.1\|WP_003674674.1\|1831698_1832700_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	7.90075e-130
NZ_CP054657.1\|WP_170090766.1\|1830151_1831678_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP054657.1\|WP_174892002.1\|1833818_1835927_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP054657.1\|WP_063164271.1\|1825918_1826878_-\|beta-galactosidase	gnl\|CDD\|214988	smart01038, Bgal_small_N, Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase.	3.05405e-93
NZ_CP054657.1\|WP_172381020.1\|1794566_1795268_-\|DUF3642-domain-containing-protein	gnl\|CDD\|371947	pfam12182, DUF3642, Bacterial lipoprotein. This domain family is found in bacteria, and is approximately 60 amino acids in length. There is a single completely conserved Y residue that may be functionally important. This domain is from a bacterial lipoprotein, a major virulence factor in Gram negative bacteria.	1.44224e-19

>NZ_CP054657.1|WP_174892001.1|1809926_1810895_-|IS30-family-transposase
MTYKHLTTRELTLIADFWYQGTKAYRAAKLLQRSQETIYRVYRFLNDGKTIDQYLQTYQRHKRRCGRKQTQLPTIEVNYIHAQIKAGWTPDTIIGRHEHPISCSMRTLYRRFARNQYGFSVKQLPMKGKRHPNGYVEHRGKAGQLGRSIYQRYRDFPHYQHEFGHFEADTVQGKAHRGAVMTLVERQSKVMIVLNIHHKTDEAVNCQLDQWLAKLPRHFVKSITFDNGKEFAGWREIANKYDLHTYFAEVGAPNQRGLNENNNGLLRRDGLSKKLDFRDLPDELVTQLMHRRNNIPRKSLNYRTPLEVFLSHVTEEQLSPFF
>NZ_CP054657.1|WP_003674676.1|1808476_1809889_+|aryl-sulfate-sulfotransferase
MGQSIFPTGVTNFRPSKTWSGYTLFNAKNEGTILIDMNGKIVHEWKDLQGFPNKMINGGKVFGSLRCRKSSDAYQDYADLTEIDWDGNIRWSFTHNEEVTDQEIGKTWVARVHHDYQLEGNPVGYFVPGQETKDDFKKVLLLTHHDRKIGSISPYPLLDHVLLEIDRNGNKLWSWSTLDHFNDFPLTDEQKNAIFKNPNFQSASKEGDVFHINYASYLGPNKWFDQGDQRFKPNNILMGSREAMMSWIVDHDTGKIVWLLGPDFTKSFTLRNLGPLVGMHNVHLIPKGLPGAGNILALNNGGWAGYGAPNQTSSTGMRTTRIDGSEVIEFNPITLEKKWSFSAKDMGYKVAAHANYFYSPLQGSVQRLPNGNTLIDEGAGGRFLEVTPSHEIVWEYIYPYIADHLIYRAYRIPYDWIPQLSPSTEIAVTPPANSEFHLPGAADPSLNPITTVSVTGAYGYNKPSPAKNNN
>NZ_CP054657.1|WP_174892000.1|1800602_1802132_+|IS66-family-transposase
MAESLKKENEALRAQLKKAQEQLEQQAITIKQLQEIIFGKKTEVLEQVADGQLSLFDPVDDLNLDQEITEVVKTTTTKIVRHRPAKKQLTRQEFLDQLPQVEEVVSLKTTTCPDCQHEMAHIGKRLVRREARLKEPELYCANLYEESYKCKHCSQDGNDKLVTSKAPMALLPHSYFSSSIMAFIAYLKFNLALPFHRQESFVQGLGLPVSAKQMASNIIKVSQTYLEPLYQYLSNTVRQEPVIHMDETPFKVVDSPKSQDYFWVTRTTKEFAQHPVVVFHHANTRSGRIIGQIVGNNYPGIIMCDGYKGYSNQLYPQAKFGSCLVHIRREFVKLIKALPKTMKASKAQQAITLLSQVFHSENQLSYQTANEKLVQRQIHVKPLMDKFYNYISQISQPIGQLRKAIQNAIQLKSRVYRVFENGQLPLSNNSVEQSIRPSTLIRKNCLFAKTEEGAKANAVYYSLVETAKLNQLNVQRYLEYLFDHLPESNCQDLVAFLPWSKNVQEECRE
>NZ_CP054657.1|WP_066036014.1|1800179_1800536_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLINWQAPEHVYLVCGKTDLRKGIDGLAMVVAENFGLDLYNNSLFLFCGSRNDRFKALYWDDEGFILLYKRYENGSLRWPKNKSEVKELKPEQLNALFTGLSPFPERRIHTIKPGNLY
>NZ_CP054657.1|WP_016496780.1|1800001_1800190_+|hypothetical-protein
MEGKHDIVAPIFKTKNSVVNKEEFIPRPAAKLQADNIELTIFKGANPSLATDIAKVVIRYAH
>NZ_CP054657.1|WP_003675988.1|1798045_1798546_-|thiol-peroxidase
MEITINGEKHQLVGNPPAIGDEFPHFKVFDKDNNKIKMKELLGKVTLLSVVPDINTPVCSIQTKHFNSTMDEFDEVNFLTISTNTIADQQKWCAAEGVKKMQLVSDAEESFGYESKLLIPDEGILARSVWILDKEGKVVYREIVDELVNEPKYDQAIAALRELLKK
>NZ_CP054657.1|WP_063164268.1|1797389_1797758_+|helix-turn-helix-transcriptional-regulator
MNQNEFDKKIKYFHENMPKQCPILYSMKIIGSKWKIPIMWYLMLNDGQHYNELKRSIGSITNTMLTKSLRELEEDGLLKRISKGTVPPSVTYHLTDTGKDLIYTMGDLFEWGKNLMEETQRN
>NZ_CP054657.1|WP_035162004.1|1796947_1797277_-|hypothetical-protein
MPFIMSRVNIKISKNKELMLKKRLGLAIANVPGKSEKVLMVGFQDNYPLYLRGNGNEPLAYIEVSIFGTESHTGYEGLNTDITKAFYDILGIQLDHLYIKYDDISSWGV
>NZ_CP054657.1|WP_172381020.1|1794566_1795268_-|DUF3642-domain-containing-protein
MRFSKAFLVATSIIAIGLYTSGCSSSSTSSNSSKSSSAQVSSVKKEESHIVGSYRDDADGAAITLNSDGTGTYVMANPTQADIHDQLTWKKEKNNYIINLNDSNYDTPIDARLNEDNLSLVGNDEWPNQSFKRVHGDFDVDNFLKEQHAKTSSSTTKDTHSKESSTHARAALKKWASDHHKDTNKIDNLKATTDLSEPDEGWAFVDDNGTEYAIVRNGKVYPRPVIDGGTSSN
>NZ_CP054657.1|WP_003675974.1|1792854_1794354_-|peptide-MFS-transporter
MSKQKNLDTSFFGQPRGLSTLFFTEMWERFSYYGMRAILLFYMYYAVTKGGLGMDQATAASIMSIYGSLVYLASVVGGWLSDRVWGSRRTVFIGGVLIMFGHIALSLPFGVSALYVSIALIVIGTGLLKPNVSEMVGGLYSPEDRRRDSGFSMFVFGINLGAAVAPWAVPWAANGFGLNLFHGEMNFHAGFSLAAIGMFFGLVQYVVDGRKYLSKDSLYPDDPIDKESLRPVIIWSIVGVVALVIILGLLAAMGQLNINNIITIITVIAIALPIYYFVMMLNSKKVTKDEKSRVVAYIPLFIAAAIFWAIEESGSVVLALFAEQRTILHIGGWHFAAANFQTLNPLFIMILTPFFVVLWDHWKKQPSAPGKFAAGLVIAGLSYVWMALPAMIHGTTAGRVSPFWLVGSWFIVEIAEMLISPIGLSVTTKLAPKAFKSQMMSMWFLADAAGQAVNAQVVKYYSSATEVPYFLIIGAVSIVFGLILCLFVKKIHGLMDGVD
>NZ_CP054657.1|WP_081120415.1|1813443_1813584_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLINWHDPDHVYLVCGKTDLRKGIDGLAMVIAENYGLELYDNSLFL
>NZ_CP054657.1|WP_035161508.1|1813573_1813762_-|hypothetical-protein
MEEKHDIVAPVFKAKGKPVSKAKISSRPVVKMKAGNIQLTIFKGTNPSLAAEIVKAVVHYAH
>NZ_CP054657.1|WP_063164271.1|1825918_1826878_-|beta-galactosidase
MAYTNKLHVIYGDGALGVAGDDFHYIFSYERGGLESMKIKGKEWLYRVPTPTFWRATTDNDRGNGFNVRSAQWVGADLFQKCVGIDLTVGDHHFDELPVAPRTNDFTGDEVTDGVVISYTFATLTIPSTHVTVSYEVQADGQIKVGVYYAGKAGLPELPVCGLRLIVPTEATGYTYAGLSGETYPDRMAGATRGTFTVKGLPVAKYLVPQENGMHMATDWVEITRNTTQNNADHDRAPFSLRVAKDDQPINFSCLPYTAEELENATHIEELPLARRTVLVVAGAVRGVGGIDSWGADVEEQYHIPADRDIEFSFLLNAK
>NZ_CP054657.1|WP_086142274.1|1827159_1828128_-|hypothetical-protein
MNSRIYTSIFKLKNITALEDIEQWRSEHCDDPVRHSKRHQEEFKRLPDGERNYRYSWNNIGEVESLPFSYGGKEINFVEASARIEYAKRKIFDSDHHYLPKKERTNLENIDIIFFEMNQKFFILIEESREKQIDRVLRLIGKANYEEVENLSSDFFNWLVYLYSENEGKLNSKIGITSISGFLGNVFDDENVVSSKSEETIKLIATRAFISTGGILREVKLNVDDSNNYNICFKMDDRCRTVISVNESVPYMTPNALEKGERLVLYMYTSLLPCLQKMFQAKKAGFKNKKKKFAKKIGLQVVKEIMDINNIHKDEIEPLDIN
>NZ_CP054657.1|WP_063164273.1|1828120_1828810_-|hypothetical-protein
MKSVFEALAKFLVGFLTAIIVSNKANILLKLLINMGIHNRSLQNTIVSLLVTFFVTCIVAILDHVYTNILFPMKINITSEQNEVKFKPNNNIYEPQRLNMHYEITPGGSLTMWMLKRLNVDLLVFFNPNYIDIALEEDKKWDFSGKEQEGLGFTEKMNQLHFLVLNSYFSEGKANKKYTVSVGMEICPKRIQNQEISLDYAMKSKKKMISTLLCKVHICDFKCKGVTDE
>NZ_CP054657.1|WP_063164274.1|1828793_1829321_-|hypothetical-protein
MKSYKILYQEDQHKNFSDYFKKENIDYIEGKINGSFAIQYNPQKLNSLLNEKEFFAKWIEYGIKQAIMTDQKFAFLILNLERIGISFLDCETNDGDNREIICDEDDRVSRELLLDLVSDEYKYILSATFFSKTHRNKIKLTQKGILHFEKSGEEIKTLIDIVNVGNEALNNEKCI
>NZ_CP054657.1|WP_170090766.1|1830151_1831678_-|lysine--tRNA-ligase
MSQELDQMRVRREKMEELKEAGIEPFGRRFKRDHLAQDLHDKFDQYDKEELNEMGAKVIIAGRMTRKRSSGKAGFADFVDRTGKIQVYARKDMVGDEPYHVFKRSDIGDFLGIEGDVIKTDTGELTVRAHKITFLSKALRPLPNKWDGVTDPETIYRQRYLDLISNPESFKRFHQRTAIIKAVRKYMDDNGFTEVETPILNTQAGGANARPFITHHNALDIDMYLRIATELYLKRLIVGGFERVYELGRIFRNEGMDPHHNPEFTTMETYAAYFDFQDVMDETEGIVKAAAKVVSDDGKITYQGHEIDLGGNFKRITMVDAVKEKTGIDFSDESMTDEDAKKLADEHKVEYTPYWTKGHILNAFFEEFVEDTLIQPTFVYEFPVEVSPLAKRNADNPAMTDRFELYVDGSELANAFSELNDPIDQKERFEMQAKEKANGNDEAEPVDLDYVQALEYGMPPTGGLGIGIDRLVMLLTDAKSIRDVILFPTMRPEKEQKDGSKKKKNNKK
>NZ_CP054657.1|WP_003674674.1|1831698_1832700_-|tRNA-dihydrouridine-synthase-DusB
MKWKIGNVEIPNQVVVAPMAGVTNSAFRVICKRFGAGYVVCEMISDRGIMYHNQRTLNMMDVDPEEHPMGIQIFGGTKETLVEAAKYVDQHTAADVIDINMGCPVNKVVKTDAGARWLLDPNKVYEMVSYVTDAVKKPVTVKMRTGWDDKHILAVENALAAERAGASAIAMHGRTRKQMYTGQADWNILKEVASQLKIPFMANGDVKTPEDAKKILDMTGATAAMIGRAAMGNPWMLKRTEHYLETGELLPEATPEQKIEMAKDHLNRLVDLKGEYVGVREFRGLSTYYIKGIPRAARTKVALVEAETLDEMNDIFDRFAEQTAERAAKRQQA
>NZ_CP054657.1|WP_003674673.1|1832807_1833728_-|Hsp33-family-molecular-chaperone-HslO
MKTTDYLVKSMTKDGKFRAYAVNATQVVQKAHEIHDTWSASSAALGRTLIGTILLATSSLQGEAGMTVKIQGNGPVGFIIADGTAEGTVKGYMGNPHVSLPANDKGKIDVAKAIGNQGTLSVTKMAPGDKTPYTGEVNLVSGELGDDFTYYLAQSEQIPSAVGLSVFVNPDENIDVAGGFMIQVMPGASDEEISKLEKTLKGLPLVSQMLRDGDTPEDILKKIFGDDLKILETMPVRYACDCSKERFAHALASISKDDMKKLIDEDHHAEAVCQFCGKKYEFNEDELKKIYAEMTANDDKNSTDEK
>NZ_CP054657.1|WP_174892002.1|1833818_1835927_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MNNNRKKNNFTHNVLFYAVMFLCIMGIAYFFFGGNTSTGQSKTVSQSEFISELRSNKVKSVQLQPNGGVYKVTGTYRKPQSNNDNSANNTGFALTPQRNNKVTQFQSSVLESDVTVSQLQNYANRHNVKISTRAEESNSVWMNLLLTVLPLVIMIFFFYMMMGQAGQGGGGRGVMSFGKTKAKPSDAKKNKVRFSDVAGEEEEKQELVEIVEFLKNPKKFTKLGARIPSGVLLEGPPGTGKTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAIIFIDEIDAVGRRRGNGMGGGHDEREQTLNQLLVEMDGFQGDEGIIVMAATNRSDVLDPALLRPGRFDRKILVGRPDVKGREAILRVHAKNKPMASDVDLKEIAKQTPGFVGADLANLLNEAALLAARRNKTEIDAADLDEAEDRVIAGPAKHNRVQSEQERKTVAYHEAGHTIVGLVLNDARVVHKVTIVPRGRAGGYAIMLPREDQMLMSKKNAMEQIAGLMGGRAAEELVFKSQSSGASNDFEQATQIARSMVTQYGMSDKIGPVELRSSGQVFTGQGYDQSPYSEKTAALVDEEVRRILTEGHETALHIIETHREQHKQIAEALLKYETLDEKQILSLYKTGKVPDKDVAAEDEEARAQTFEESKRELERLENERHDEAKDNQNDSSDAKSDNSNDSQSSDDSDDSEDK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054657_2	2.2\|1811511\|34\|NZ_CP054657\|CRISPRCasFinder	1811511-1811544	34	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	133936-133969	10	0.706

1. spacer 2.2|1811511|34|NZ_CP054657|CRISPRCasFinder matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 10, identity: 0.706

ggtatcagtgcccttgttgccgttgtctggcttt	CRISPR spacer
gtgatcggtgcccttgttgccgttttcgcgaaag	Protospacer
*  ***.***************** **  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19421 : 78672

Bacillus_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016496345.1\|19421_20642_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.2e-83	43.3
WP_003668074.1\|21488_22457_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_003675553.1\|22863_24513_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.1e-110	43.8
WP_003675551.1\|24857_25565_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.3e-40	39.6
WP_003675548.1\|25578_27444_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	5.5e-34	34.7
WP_003675546.1\|27421_28717_+	hypothetical protein	NA	NA	NA	NA
WP_003675544.1\|28729_29572_+	two-component system regulatory protein YycI	NA	NA	NA	NA
WP_174891748.1\|29589_30396_+	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	4.3e-36	35.1
WP_174891749.1\|30499_31780_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	6.2e-21	29.3
WP_174891750.1\|31871_32381_+	phosphatidylglycerophosphatase A	A0A291I9Q0	Lactobacillus_phage	1.4e-40	51.9
WP_003675538.1\|32689_33676_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_035161733.1\|34144_34624_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_003675532.1\|34767_34986_+	hypothetical protein	NA	NA	NA	NA
WP_003675530.1\|35053_35596_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003675528.1\|35814_36987_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_019251835.1\|37054_37831_-	VOC family protein	NA	NA	NA	NA
WP_003675527.1\|37832_38645_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_003675525.1\|38945_40319_+	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_003675522.1\|40494_41577_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_003675520.1\|41578_42277_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-37	37.9
WP_063164305.1\|42263_43499_+	ABC transporter permease	NA	NA	NA	NA
WP_016496365.1\|43638_44298_+	hypothetical protein	NA	NA	NA	NA
WP_063164136.1\|44363_45332_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_041821552.1\|45564_46959_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_016496976.1\|48190_49141_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_086131695.1\|49285_49672_-	OsmC family protein	NA	NA	NA	NA
WP_016496411.1\|49740_50664_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	5.1e-33	31.3
WP_003670244.1\|50920_51142_+	hypothetical protein	NA	NA	NA	NA
WP_174892014.1\|51274_53497_+\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	1.6e-120	38.8
WP_174891751.1\|54410_57287_+	hypothetical protein	NA	NA	NA	NA
WP_079375840.1\|57371_57998_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016496373.1\|58095_59559_+	cardiolipin synthase	NA	NA	NA	NA
WP_016496374.1\|59673_63456_+	PD-(D/E)XK nuclease family protein	NA	NA	NA	NA
WP_063164315.1\|63455_67634_+	helicase-exonuclease AddAB subunit AddA	A7KV33	Bacillus_phage	2.1e-17	24.0
WP_003675501.1\|67634_68570_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003675500.1\|68633_69812_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_016496437.1\|70112_71531_+\|transposase	ISLre2-like element ISLre2 family transposase	NA	NA	NA	NA
WP_003670259.1\|71701_73051_+	SLC45 family MFS transporter	NA	NA	NA	NA
WP_003675498.1\|73139_75392_+	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_174891752.1\|75410_76073_+	beta-phosphoglucomutase	NA	NA	NA	NA
WP_003675493.1\|76332_76953_+	GTP pyrophosphokinase	NA	NA	NA	NA
WP_013923736.1\|77541_78672_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	8.7e-35	32.2

DBSCAN-SWA_2

115515 : 150189

Bacillus_phage(25.0%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_143455706.1\|115515_116802_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_143455706.1\|117070_118357_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003668074.1\|118576_119545_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_003675442.1\|119827_120079_+	hypothetical protein	NA	NA	NA	NA
WP_003675440.1\|120175_120856_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.5e-29	33.8
WP_174891761.1\|120852_122184_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	7.6e-22	27.3
WP_003675438.1\|122288_122939_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_063164326.1\|125100_125421_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_003675433.1\|125546_126140_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003675432.1\|126289_126970_+	hypothetical protein	NA	NA	NA	NA
WP_003675431.1\|126971_127946_+	hypothetical protein	NA	NA	NA	NA
WP_003675430.1\|128179_129052_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.1e-52	40.2
WP_003675429.1\|129154_129640_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003675428.1\|129698_130568_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003665145.1\|131223_131427_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_174891762.1\|131427_132288_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_035161724.1\|132394_132934_+	phenolic acid decarboxylase	NA	NA	NA	NA
WP_003675423.1\|132976_133507_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_174892015.1\|133509_134109_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_003670156.1\|134208_135210_+	DUF1002 domain-containing protein	NA	NA	NA	NA
WP_174891763.1\|135267_136257_-	asparaginase	NA	NA	NA	NA
WP_003675420.1\|137328_138207_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.0e-52	40.9
WP_003669414.1\|138307_138886_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_016496408.1\|140118_140763_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003669411.1\|140868_141240_+	hypothetical protein	NA	NA	NA	NA
WP_003669410.1\|141341_142013_+	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_013923736.1\|142057_143188_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	8.7e-35	32.2
WP_143455706.1\|143645_144932_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_174891764.1\|145711_146392_+	EAL domain-containing protein	NA	NA	NA	NA
WP_174891765.1\|146460_147759_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.3e-55	31.5
WP_016496414.1\|147778_148789_-	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	5.5e-65	43.4
WP_016496411.1\|149265_150189_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	5.1e-33	31.3

DBSCAN-SWA_3

157426 : 216720

unidentified_phage(12.5%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016496411.1\|157426_158350_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	5.1e-33	31.3
WP_016496417.1\|158382_159696_+	hypothetical protein	NA	NA	NA	NA
WP_035161715.1\|159688_160141_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_035161712.1\|160205_160808_-	nitroreductase family protein	NA	NA	NA	NA
WP_174892016.1\|160905_161226_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003675390.1\|161343_162000_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_174891768.1\|162180_162618_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003669379.1\|162746_162980_+	cytochrome b5	NA	NA	NA	NA
WP_003665104.1\|163115_163334_+	cytochrome b5	NA	NA	NA	NA
WP_003675383.1\|163346_163592_+	cytochrome b5	NA	NA	NA	NA
WP_016496424.1\|163649_164786_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	6.0e-84	45.5
WP_003675378.1\|165546_166503_+	ketopantoate reductase family protein	NA	NA	NA	NA
WP_081372314.1\|166686_168081_-	amino acid permease	NA	NA	NA	NA
WP_072575256.1\|169611_170856_+	MFS transporter	NA	NA	NA	NA
WP_016497187.1\|171454_172168_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	3.8e-28	36.1
WP_142490569.1\|172164_173016_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.9e-16	25.2
WP_174891769.1\|173089_174895_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	6.0e-86	32.1
WP_016496430.1\|175223_175907_-	hypothetical protein	NA	NA	NA	NA
WP_142499187.1\|176218_177595_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.3e-29	39.5
WP_171945898.1\|177660_179301_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_003665087.1\|179825_180836_+	zinc-dependent alcohol dehydrogenase family protein	A0A2K9L7I1	Tupanvirus	3.1e-07	26.8
WP_003675363.1\|181097_181610_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_174891770.1\|181620_182679_+	ABC transporter permease	NA	NA	NA	NA
WP_003675359.1\|182696_183383_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.2e-32	37.6
WP_086131509.1\|183481_185464_+	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	1.9e-32	40.7
WP_003675355.1\|185689_185926_+	hypothetical protein	NA	NA	NA	NA
WP_003675352.1\|186028_186346_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_174891771.1\|186473_188171_-	LysM peptidoglycan-binding domain-containing protein	A0A249Y0X5	Enterococcus_phage	2.7e-24	39.6
WP_003675348.1\|188597_189542_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	4.4e-16	26.5
WP_003675345.1\|189673_189859_-	hypothetical protein	NA	NA	NA	NA
WP_003675343.1\|190084_190705_+	hypothetical protein	NA	NA	NA	NA
WP_003675341.1\|190706_191903_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.4e-53	34.8
WP_003675339.1\|192224_193502_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_016496435.1\|193623_194118_-	hypothetical protein	NA	NA	NA	NA
WP_016496436.1\|194221_194860_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_086131511.1\|195057_196443_-	L,D-transpeptidase	NA	NA	NA	NA
WP_174891772.1\|196634_198053_+\|transposase	ISLre2-like element ISLre2 family transposase	NA	NA	NA	NA
WP_013923736.1\|198349_199480_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	8.7e-35	32.2
WP_003669331.1\|199830_200487_+	L,D-transpeptidase	NA	NA	NA	NA
WP_003675328.1\|200685_201267_-	hypothetical protein	NA	NA	NA	NA
WP_003675327.1\|201337_202549_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_003675325.1\|202616_203471_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003675324.1\|203633_204755_-	glycerol dehydrogenase	NA	NA	NA	NA
WP_079376222.1\|204910_207040_-	LTA synthase family protein	W6LM83	Streptococcus_phage	9.6e-160	45.7
WP_003665058.1\|207165_207429_-	hypothetical protein	NA	NA	NA	NA
WP_003675320.1\|207560_208214_+	phosphoglycerate mutase family protein	NA	NA	NA	NA
WP_003675317.1\|209977_211387_-	Na+/H+ antiporter NhaC	NA	NA	NA	NA
WP_035161696.1\|211698_213027_-	purine permease	Q9KX94	Enterobacteria_phage	3.5e-35	30.8
WP_016496447.1\|213393_214827_+	C69 family dipeptidase	NA	NA	NA	NA
WP_142499022.1\|214977_216720_+\|transposase	IS1182 family transposase	A0A146ICT8	Staphylococcus_phage	1.2e-96	39.5

DBSCAN-SWA_4

378862 : 436994

Macacine_betaherpesvirus(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016496813.1\|378862_380239_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.0e-29	39.5
WP_016496521.1\|380501_381740_+	OFA family MFS transporter	NA	NA	NA	NA
WP_016496522.1\|381810_382683_+	RNA methyltransferase	NA	NA	NA	NA
WP_174892018.1\|383196_384162_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_086131366.1\|384555_385170_+	sugar permease	NA	NA	NA	NA
WP_086131365.1\|386267_386744_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_174891793.1\|386859_387723_+	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_086131675.1\|390386_391568_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_016496813.1\|391670_393047_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.0e-29	39.5
WP_003674998.1\|393313_393871_+	elongation factor P	NA	NA	NA	NA
WP_003668074.1\|394219_395188_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_086132486.1\|395210_395921_-	response regulator transcription factor	NA	NA	NA	NA
WP_063164373.1\|396046_396919_+	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003674993.1\|396923_397823_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_174891794.1\|397822_398704_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_016496537.1\|398714_399470_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-14	28.9
WP_016496538.1\|399480_400185_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_003674981.1\|403691_404831_+	beta-glucanase	NA	NA	NA	NA
WP_003674979.1\|404827_405589_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA
WP_174891795.1\|405666_407439_-	oleate hydratase	NA	NA	NA	NA
WP_003674975.1\|407593_408937_+	Trk family potassium uptake protein	NA	NA	NA	NA
WP_003664702.1\|408929_409598_+	TrkA family potassium uptake protein	NA	NA	NA	NA
WP_003674974.1\|409615_410161_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_174891796.1\|410428_411733_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_117115056.1\|411735_412668_-	ferrochelatase	NA	NA	NA	NA
WP_003664688.1\|412975_413890_+	cysteine synthase family protein	A0A1X9I5K7	Streptococcus_phage	5.7e-61	41.4
WP_174891797.1\|414083_414623_+	flavodoxin family protein	NA	NA	NA	NA
WP_174891798.1\|414984_417204_+	choice-of-anchor A family protein	NA	NA	NA	NA
WP_086141568.1\|417274_418303_-	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_063164376.1\|418482_419199_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_086132214.1\|419293_420763_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2I4R674	Erysipelothrix_phage	2.0e-23	24.7
WP_174891772.1\|421079_422498_-\|transposase	ISLre2-like element ISLre2 family transposase	NA	NA	NA	NA
WP_086132595.1\|422671_424189_+	YfcC family protein	NA	NA	NA	NA
WP_003674958.1\|424201_425536_+	Sapep family Mn(2+)-dependent dipeptidase	NA	NA	NA	NA
WP_003674956.1\|425832_427050_+	MFS transporter	NA	NA	NA	NA
WP_003668877.1\|427070_428528_+	sucrose phosphorylase	NA	NA	NA	NA
WP_003674954.1\|428680_429478_-	serine hydrolase	NA	NA	NA	NA
WP_003674953.1\|430748_431993_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_003668870.1\|432332_432773_+	hypothetical protein	NA	NA	NA	NA
WP_003674951.1\|432849_433887_-	galactose mutarotase	NA	NA	NA	NA
WP_086141410.1\|434004_434232_+	hypothetical protein	NA	NA	NA	NA
WP_003674947.1\|434255_435653_-	DUF2252 domain-containing protein	NA	NA	NA	NA
WP_016496566.1\|435833_436994_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	3.9e-147	66.7

DBSCAN-SWA_5

675725 : 759563

Lactobacillus_phage(60.47%)

head,tail,transposase,plate,integrase,protease,portal,tRNA,terminase,capsid

attL 668776:668810|attR 746818:746852

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
668776:668810	attL	NA	NA	NA	NA
WP_003675835.1\|675725_678146_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	68.5
WP_003675833.1\|678207_678471_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_016496675.1\|678585_680235_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_174891820.1\|680436_681723_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003675829.1\|681820_682681_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_035161886.1\|682769_684173_+	dipeptidase PepV	NA	NA	NA	NA
WP_003675826.1\|684197_684710_+	universal stress protein	NA	NA	NA	NA
WP_003675824.1\|684798_685845_+	glucosaminidase domain-containing protein	A0A249Y0X5	Enterococcus_phage	9.0e-10	32.2
WP_003664204.1\|685879_686512_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	2.1e-46	46.4
WP_003675822.1\|686727_687336_+	hypothetical protein	NA	NA	NA	NA
WP_003675820.1\|687417_688434_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003675819.1\|688490_689414_+	ribokinase	NA	NA	NA	NA
WP_003668533.1\|689531_689777_+	hypothetical protein	NA	NA	NA	NA
WP_003675817.1\|689760_690438_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003664194.1\|690781_691060_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_174891821.1\|691304_692393_-\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	4.8e-99	50.4
WP_174891822.1\|692480_693017_-	hypothetical protein	NA	NA	NA	NA
WP_174891823.1\|693104_693755_-	hypothetical protein	NA	NA	NA	NA
WP_174891824.1\|693823_694249_-	ImmA/IrrE family metallo-endopeptidase	A0A0M7RF74	Lactobacillus_phage	2.8e-10	37.1
WP_123835263.1\|694245_694569_-	helix-turn-helix transcriptional regulator	E9LUL4	Lactobacillus_phage	5.7e-32	65.1
WP_107721247.1\|694720_694936_+	helix-turn-helix transcriptional regulator	E9LUL5	Lactobacillus_phage	8.8e-21	69.0
WP_174891825.1\|694963_695752_+	phage antirepressor KilAC domain-containing protein	B8R674	Lactobacillus_phage	1.1e-87	64.9
WP_174891826.1\|695763_696102_+	DUF771 domain-containing protein	Q37943	Lactococcus_phage	7.6e-27	51.5
WP_174891827.1\|696250_696436_+	hypothetical protein	NA	NA	NA	NA
WP_174891828.1\|696471_696699_+	hypothetical protein	NA	NA	NA	NA
WP_174891829.1\|696691_696961_+	hypothetical protein	NA	NA	NA	NA
WP_174892021.1\|696984_697626_+	ERF family protein	A0A1S5SAA3	Streptococcus_phage	5.5e-34	56.7
WP_174891830.1\|697618_697999_+	single-stranded DNA-binding protein	G4KNN8	Staphylococcus_phage	3.8e-11	29.1
WP_174891831.1\|698768_699608_+	ATP-binding protein	E9LUN6	Lactobacillus_phage	3.2e-34	36.7
WP_174891832.1\|699755_700283_+	hypothetical protein	NA	NA	NA	NA
WP_174891833.1\|700340_700853_+	DUF1064 domain-containing protein	A0A1I9KKZ1	Lactobacillus_phage	1.1e-32	54.4
WP_174891834.1\|700879_701359_+	hypothetical protein	NA	NA	NA	NA
WP_086141608.1\|701345_701534_+\|integrase	integrase	NA	NA	NA	NA
WP_174891744.1\|701533_701806_+	hypothetical protein	NA	NA	NA	NA
WP_174891835.1\|702022_702292_+	hypothetical protein	Q5ULN6	Lactobacillus_virus	4.6e-19	50.6
WP_174891836.1\|702291_702543_+	hypothetical protein	A0A2K9VC51	Lactobacillus_phage	4.0e-17	50.6
WP_174891837.1\|702543_703290_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_174891838.1\|703339_703534_+	hypothetical protein	NA	NA	NA	NA
WP_174891839.1\|703546_703990_+	hypothetical protein	NA	NA	NA	NA
WP_174891840.1\|704199_704715_+	hypothetical protein	NA	NA	NA	NA
WP_174891841.1\|706331_706604_+	hypothetical protein	NA	NA	NA	NA
WP_174891842.1\|706590_706743_+	hypothetical protein	NA	NA	NA	NA
WP_174891843.1\|706790_707294_+	HNH endonuclease	B8R694	Lactobacillus_phage	1.4e-24	37.7
WP_174891844.1\|707525_708065_+\|terminase	phage terminase small subunit P27 family	A0A0M7REI3	Lactobacillus_phage	5.2e-86	92.7
WP_174892022.1\|708090_709980_+\|terminase	terminase large subunit	A0A0M7RDK9	Lactobacillus_phage	0.0e+00	96.5
WP_174891845.1\|710156_711344_+\|portal	phage portal protein	A0A0M9JJ63	Lactobacillus_phage	1.2e-215	96.2
WP_174891846.1\|711318_713226_+\|capsid	phage major capsid protein	A0A0M7RF71	Lactobacillus_phage	6.2e-283	88.0
WP_174891847.1\|713300_713570_+	hypothetical protein	A0A0M7RDR5	Lactobacillus_phage	8.1e-32	90.1
WP_174892023.1\|713553_713916_+\|head	phage head closure protein	A0A0M7RFE1	Lactobacillus_phage	2.4e-55	89.1
WP_174891848.1\|713908_714346_+	HK97 gp10 family phage protein	A0A0M7RDL2	Lactobacillus_phage	5.0e-71	94.4
WP_174891849.1\|714342_714732_+	DUF806 family protein	A0A0M7RE53	Lactobacillus_phage	4.2e-61	88.3
WP_174891850.1\|714735_715449_+\|tail	phage tail protein	A0A0M7RF39	Lactobacillus_phage	3.1e-123	91.4
WP_174891851.1\|715521_715932_+	hypothetical protein	A0A0M7REI9	Lactobacillus_phage	1.5e-61	89.0
WP_174891852.1\|715991_716162_+	hypothetical protein	A0A0M7RDM0	Lactobacillus_phage	6.9e-21	90.9
WP_174891853.1\|719997_720843_+\|tail	phage tail family protein	A0A0B5CTY7	Listeria_phage	4.7e-09	23.4
WP_174891854.1\|720842_722681_+\|tail	phage tail protein	E9LUJ4	Lactobacillus_phage	3.3e-39	31.2
WP_174891855.1\|722670_722922_+	hypothetical protein	NA	NA	NA	NA
WP_174891856.1\|722931_723111_+	hypothetical protein	NA	NA	NA	NA
WP_174891857.1\|723107_724181_+\|plate	BppU family phage baseplate upper protein	E9LUJ9	Lactobacillus_phage	5.6e-23	30.1
WP_174891858.1\|724193_724481_+	hypothetical protein	NA	NA	NA	NA
WP_174891859.1\|724480_724624_+	hypothetical protein	NA	NA	NA	NA
WP_174891860.1\|724592_726272_+	hypothetical protein	A0A2P0ZL67	Lactobacillus_phage	4.1e-12	30.7
WP_174891861.1\|726428_726809_+	hypothetical protein	A0A0A1ENR5	Lactobacillus_phage	5.5e-34	57.6
WP_174891862.1\|726969_727431_+	hypothetical protein	A0A0A1ELI5	Lactobacillus_phage	5.0e-21	43.1
WP_174891863.1\|727443_728373_+	SH3 domain-containing protein	A0A0A1ERA5	Lactobacillus_phage	3.5e-130	69.1
WP_035168688.1\|728540_728813_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_109913969.1\|728878_729217_+	type II toxin-antitoxin system PemK/MazF family toxin	A9D9Y1	Lactobacillus_prophage	9.6e-22	45.3
WP_174891864.1\|729641_730037_+	ASCH domain-containing protein	NA	NA	NA	NA
WP_079376116.1\|730100_730460_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003675807.1\|730462_730975_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_174891865.1\|730956_731535_+	GTP cyclohydrolase I FolE	A0A2I7S8W4	Vibrio_phage	6.4e-34	41.3
WP_003675803.1\|731521_732781_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_016496682.1\|732770_733358_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_003675799.1\|733359_734523_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	8.8e-06	24.2
WP_016496683.1\|734488_734824_-	hypothetical protein	NA	NA	NA	NA
WP_003664174.1\|734965_735238_+	hypothetical protein	NA	NA	NA	NA
WP_063164460.1\|735423_736362_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003664171.1\|736374_737190_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_003675795.1\|737550_739239_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.3e-71	32.4
WP_003675792.1\|739406_741572_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_003675790.1\|741620_741992_+	YlbF family regulator	NA	NA	NA	NA
WP_003675789.1\|742071_743256_+	DNA repair exonuclease	A0A2H4UT91	Bodo_saltans_virus	9.9e-05	26.4
WP_016496685.1\|743259_745752_+	AAA family ATPase	NA	NA	NA	NA
WP_003675786.1\|745866_746802_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_003675785.1\|746974_747205_-	hypothetical protein	NA	NA	NA	NA
746818:746852	attR	NA	NA	NA	NA
WP_016496686.1\|747207_747642_-	HIT family protein	D7NW73	Streptomyces_phage	1.9e-06	31.3
WP_003670839.1\|747778_748516_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-23	27.4
WP_086131533.1\|748508_749711_+	ABC transporter permease	NA	NA	NA	NA
WP_003675776.1\|749723_750365_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_016496689.1\|751134_751641_+	hypothetical protein	NA	NA	NA	NA
WP_174892024.1\|751878_754257_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_174892025.1\|755843_756824_-	aldo/keto reductase	A0A1V0SDE7	Indivirus	7.4e-06	28.5
WP_016496694.1\|756992_757913_-	glutaminase A	NA	NA	NA	NA
WP_003675767.1\|757963_758302_-	hypothetical protein	NA	NA	NA	NA
WP_003664132.1\|758466_758787_+	thioredoxin family protein	J7KD15	Aeromonas_phage	2.0e-05	35.8
WP_003675765.1\|758915_759563_+\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_6

809276 : 869893

Lactobacillus_prophage(15.38%)

tRNA,integrase,transposase,protease

attL 828620:828639|attR 853631:853650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003675691.1\|809276_810782_+\|tRNA	glutamate--tRNA ligase	A0A2K9L0I5	Tupanvirus	1.3e-09	31.9
WP_003675688.1\|810894_812076_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_003675687.1\|812761_813613_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_086142601.1\|814179_814584_-	hypothetical protein	NA	NA	NA	NA
WP_086142602.1\|814679_815864_-\|integrase	site-specific integrase	A9D9I9	Lactobacillus_prophage	1.3e-60	37.9
WP_174891871.1\|815914_816406_-	hypothetical protein	D6PSS8	Lactobacillus_phage	3.3e-07	27.8
WP_086142711.1\|816439_816823_-	helix-turn-helix domain-containing protein	A0A075LYE4	Staphylococcus_phage	1.4e-16	57.0
WP_094542325.1\|817320_817578_+	hypothetical protein	NA	NA	NA	NA
WP_086142697.1\|817589_817835_+	DUF771 domain-containing protein	NA	NA	NA	NA
WP_086142698.1\|817865_818150_+	hypothetical protein	NA	NA	NA	NA
WP_086142699.1\|818164_819493_+	DnaD domain protein	NA	NA	NA	NA
WP_162606835.1\|819516_819684_+	hypothetical protein	NA	NA	NA	NA
WP_143454410.1\|819820_820027_+	hypothetical protein	NA	NA	NA	NA
WP_086878903.1\|820037_820370_+	hypothetical protein	NA	NA	NA	NA
WP_174891872.1\|821002_821341_+	hypothetical protein	NA	NA	NA	NA
WP_086142703.1\|821364_821679_+	hypothetical protein	NA	NA	NA	NA
WP_174891873.1\|821693_822902_+	hypothetical protein	NA	NA	NA	NA
WP_086142705.1\|822918_823314_+	hypothetical protein	NA	NA	NA	NA
WP_174891874.1\|823325_823481_+	hypothetical protein	NA	NA	NA	NA
WP_086132178.1\|823637_824237_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	3.1e-23	35.7
WP_143449786.1\|824173_825082_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_086142707.1\|825434_825767_+	hypothetical protein	S5MAA0	Brevibacillus_phage	4.7e-05	40.3
WP_086142708.1\|825808_826144_+	hypothetical protein	NA	NA	NA	NA
WP_086142709.1\|826189_826726_+	thioredoxin family protein	NA	NA	NA	NA
WP_086142712.1\|826814_827738_+	hypothetical protein	NA	NA	NA	NA
828620:828639	attL	NA	NA	NA	NA
WP_086118196.1\|828884_829193_+	hypothetical protein	NA	NA	NA	NA
WP_086118195.1\|829194_829650_+	hypothetical protein	NA	NA	NA	NA
WP_086118194.1\|829681_830119_+	hypothetical protein	NA	NA	NA	NA
WP_086118193.1\|830158_832171_+	hypothetical protein	NA	NA	NA	NA
WP_086118192.1\|832274_832457_+	hypothetical protein	NA	NA	NA	NA
WP_086118190.1\|832873_833212_-	type II toxin-antitoxin system PemK/MazF family toxin	A9D9Y1	Lactobacillus_prophage	9.6e-22	48.6
WP_086118189.1\|833277_833550_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_086118188.1\|833832_834375_+	hypothetical protein	NA	NA	NA	NA
WP_174891875.1\|834484_835498_+	hypothetical protein	NA	NA	NA	NA
WP_086118186.1\|835570_837889_+	hypothetical protein	NA	NA	NA	NA
WP_172396917.1\|837929_838100_+	hypothetical protein	NA	NA	NA	NA
WP_086118185.1\|838247_838685_+	hypothetical protein	NA	NA	NA	NA
WP_086118184.1\|838875_839799_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.0e-33	31.9
WP_086118183.1\|840147_840807_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_086118182.1\|840787_841465_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_086118181.1\|841482_842223_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-33	36.2
WP_086118180.1\|842244_843102_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_174891876.1\|843209_844133_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.9e-32	31.3
WP_086118125.1\|844203_847026_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_086118124.1\|847364_849296_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_086118123.1\|849279_850347_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_086118122.1\|850448_851366_+\|integrase	site-specific integrase	A8ATM2	Listeria_phage	5.0e-73	45.3
WP_086118121.1\|851590_852166_+	hypothetical protein	NA	NA	NA	NA
WP_086118120.1\|852505_853501_-	hypothetical protein	NA	NA	NA	NA
WP_174891877.1\|853712_860969_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
853631:853650	attR	NA	NA	NA	NA
WP_174891878.1\|861136_861631_+	hypothetical protein	NA	NA	NA	NA
WP_153706039.1\|861614_861845_+	hypothetical protein	NA	NA	NA	NA
WP_172401352.1\|862611_862818_+	NrdH-redoxin	NA	NA	NA	NA
WP_174891879.1\|862824_863976_+	toprim domain-containing protein	NA	NA	NA	NA
WP_174891880.1\|864045_864531_-	helix-turn-helix domain-containing protein	Q20DG0	Lactobacillus_phage	2.1e-09	48.4
WP_174891881.1\|864729_866784_+	type IA DNA topoisomerase	NA	NA	NA	NA
WP_174891882.1\|866787_867600_+	hypothetical protein	NA	NA	NA	NA
WP_102817005.1\|867621_868041_+	hypothetical protein	NA	NA	NA	NA
WP_174891883.1\|868057_869893_+\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	2.2e-83	36.7

DBSCAN-SWA_7

907023 : 963508

Indivirus(18.18%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003664008.1\|907023_907347_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_003664006.1\|907372_907654_+	50S ribosomal protein L27	NA	NA	NA	NA
WP_003675674.1\|907779_908487_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_142499182.1\|908499_909576_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_086118324.1\|909577_910252_+	hypothetical protein	NA	NA	NA	NA
WP_003663867.1\|910341_910779_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_003663865.1\|910780_911197_+	transcription antitermination factor NusB	NA	NA	NA	NA
WP_003675667.1\|911327_912188_+	hypothetical protein	A0A249XZQ2	Enterococcus_phage	6.6e-35	41.7
WP_003675664.1\|912180_913518_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	4.1e-39	34.3
WP_003675663.1\|913519_913801_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_003675661.1\|913819_914692_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_003668402.1\|914703_915525_+	TlyA family RNA methyltransferase	NA	NA	NA	NA
WP_003675659.1\|915543_915996_+	ArgR family transcriptional regulator	NA	NA	NA	NA
WP_003675657.1\|916011_917691_+	DNA repair protein RecN	NA	NA	NA	NA
WP_003668397.1\|917828_918179_-	hypothetical protein	NA	NA	NA	NA
WP_003663856.1\|918320_918941_+	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	6.5e-24	33.0
WP_003663855.1\|918937_919156_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_003675656.1\|919266_920472_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	2.1e-42	33.7
WP_003675654.1\|920472_922902_+	primosomal protein N'	NA	NA	NA	NA
WP_003675652.1\|922919_923873_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	5.7e-11	31.6
WP_016496724.1\|923862_925212_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_003675648.1\|925219_925960_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
WP_003675646.1\|925963_927868_+	Stk1 family PASTA domain-containing Ser/Thr kinase	A0A1Q1PNS5	Noumeavirus	1.3e-17	36.3
WP_003675644.1\|927880_928771_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_003663836.1\|928781_929435_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_063164556.1\|929520_930171_+	thiamine diphosphokinase	NA	NA	NA	NA
WP_003663833.1\|930320_930506_+	50S ribosomal protein L28	NA	NA	NA	NA
WP_003663831.1\|930700_931063_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_003675642.1\|931088_932798_+	DAK2 domain-containing protein	NA	NA	NA	NA
WP_086142170.1\|932900_934937_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
WP_003675638.1\|934954_935986_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_003663823.1\|936022_936277_+	acyl carrier protein	NA	NA	NA	NA
WP_003663822.1\|936455_937157_+	ribonuclease III	A0A1V0SDK0	Indivirus	4.0e-22	35.3
WP_174891910.1\|937173_940737_+	chromosome segregation protein SMC	NA	NA	NA	NA
WP_003675634.1\|940759_942286_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_003663818.1\|942300_942642_+	putative DNA-binding protein	NA	NA	NA	NA
WP_003675632.1\|942643_944089_+	signal recognition particle protein	NA	NA	NA	NA
WP_003663816.1\|944187_944463_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_003675631.1\|944475_944736_+	KH domain-containing protein	NA	NA	NA	NA
WP_086120478.1\|944790_945297_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003663813.1\|945296_946055_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_174891911.1\|946065_947496_+	amino acid permease	NA	NA	NA	NA
WP_003675625.1\|947618_947978_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_086132178.1\|948505_949105_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	3.1e-23	35.7
WP_143449786.1\|949041_949950_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_174891912.1\|950150_951119_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_072575358.1\|951319_952606_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003675622.1\|952847_953072_-	hypothetical protein	NA	NA	NA	NA
WP_035161845.1\|953221_953554_+	DNA-binding protein	M5AWB2	Nitratiruptor_phage	3.8e-15	42.2
WP_003675618.1\|953556_954384_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.4e-98	63.0
WP_003675615.1\|954435_954915_-	hypothetical protein	NA	NA	NA	NA
WP_016496813.1\|955215_956592_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.0e-29	39.5
WP_086120500.1\|956659_957640_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_003675611.1\|957720_958620_+	prenyltransferase	NA	NA	NA	NA
WP_003675609.1\|958655_959357_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_003675607.1\|959377_960613_-	MFS transporter	NA	NA	NA	NA
WP_003675605.1\|960731_961610_+	metallophosphoesterase family protein	NA	NA	NA	NA
WP_003667006.1\|961755_962025_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_174891913.1\|962221_963508_+\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

968923 : 1047206

Lactococcus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_016496813.1\|968923_970300_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.0e-29	39.5
WP_016496743.1\|982375_982600_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_063164569.1\|983205_984213_+	sugar transferase	NA	NA	NA	NA
WP_174891914.1\|984232_985423_+	accessory Sec system protein translocase subunit SecY2	NA	NA	NA	NA
WP_003675585.1\|985425_986937_+	accessory Sec system protein Asp1	NA	NA	NA	NA
WP_072574913.1\|986948_988436_+	accessory Sec system protein Asp2	NA	NA	NA	NA
WP_174891915.1\|988438_989326_+	accessory Sec system protein Asp3	NA	NA	NA	NA
WP_016496747.1\|989329_991678_+	accessory Sec system translocase SecA2	NA	NA	NA	NA
WP_174891916.1\|991692_993231_+	accessory Sec system glycosyltransferase GtfA	NA	NA	NA	NA
WP_003675575.1\|993223_994549_+	accessory Sec system glycosylation chaperone GtfB	NA	NA	NA	NA
WP_016496748.1\|994541_994739_+	hypothetical protein	NA	NA	NA	NA
WP_003675573.1\|994996_995545_+	serine-rich glycoprotein adhesin	NA	NA	NA	NA
WP_142490509.1\|995680_997414_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_142490597.1\|997532_998222_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.9e-49	50.0
WP_063164572.1\|998160_999381_-\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.0e-86	44.3
WP_174891917.1\|999499_1000903_-	C69 family dipeptidase	NA	NA	NA	NA
WP_174891918.1\|1001041_1002871_+	monovalent cation:proton antiporter family protein	NA	NA	NA	NA
WP_003663508.1\|1002953_1003139_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA
WP_174891919.1\|1003273_1004776_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_174891920.1\|1004820_1005333_+	hypothetical protein	NA	NA	NA	NA
WP_016496755.1\|1005365_1005602_-	hypothetical protein	NA	NA	NA	NA
WP_124216391.1\|1006717_1007719_+	LCP family protein	NA	NA	NA	NA
WP_174891921.1\|1007739_1008615_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_174891922.1\|1008627_1009374_+	CpsD/CapB family tyrosine-protein kinase	A0A1X9I5D6	Streptococcus_phage	3.0e-23	35.0
WP_174891923.1\|1009389_1010049_+	sugar transferase	NA	NA	NA	NA
WP_174892027.1\|1010107_1010557_+	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA
WP_174891924.1\|1010566_1011061_+	glycosyltransferase	NA	NA	NA	NA
WP_174891925.1\|1011375_1012245_+	hypothetical protein	NA	NA	NA	NA
WP_174891926.1\|1012259_1013306_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_174891927.1\|1013277_1014279_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_174891928.1\|1014280_1015738_+	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_174891929.1\|1015718_1016687_+	hypothetical protein	NA	NA	NA	NA
WP_174891930.1\|1016689_1017850_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_174891931.1\|1017853_1018675_+	hypothetical protein	NA	NA	NA	NA
WP_174891932.1\|1018681_1019410_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_174891933.1\|1019435_1020488_+	NAD(P)-dependent oxidoreductase	E3T4Y8	Cafeteria_roenbergensis_virus	8.5e-08	23.7
WP_086118184.1\|1020528_1021452_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.0e-33	31.9
WP_174891934.1\|1021827_1022946_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	3.0e-168	76.8
WP_174891935.1\|1023156_1024377_+\|transposase	IS21 family transposase	A0A059NT83	Lactococcus_phage	4.0e-86	44.3
WP_142490597.1\|1024315_1025005_+	ATP-binding protein	A0A059NT77	Lactococcus_phage	2.9e-49	50.0
WP_003676711.1\|1025241_1026282_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	8.5e-61	39.6
WP_099979896.1\|1028185_1029589_+	amino acid permease	NA	NA	NA	NA
WP_016496796.1\|1029667_1029925_+	hypothetical protein	NA	NA	NA	NA
WP_041816984.1\|1030322_1030721_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.0e-46	62.9
WP_174891936.1\|1030720_1031896_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0ICY9	Lactobacillus_phage	1.0e-118	55.7
WP_003663560.1\|1032257_1032500_-	hypothetical protein	NA	NA	NA	NA
WP_174891937.1\|1032681_1034577_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_174891938.1\|1034641_1038127_+	DEAD/DEAH box helicase	V9XTV7	Choristoneura_murinana_nucleopolyhedrovirus	1.5e-37	26.7
WP_003676694.1\|1038222_1038999_+	hypothetical protein	NA	NA	NA	NA
WP_174891939.1\|1039151_1040054_+	glycoside hydrolase family 25	A0A0A1ERA5	Lactobacillus_phage	6.8e-99	54.9
WP_003676691.1\|1040206_1041325_+	exonuclease SbcCD subunit D	J9PM68	Bacillus_phage	4.2e-05	25.7
WP_174891940.1\|1041326_1044428_+	SMC family ATPase	NA	NA	NA	NA
WP_072574974.1\|1045064_1045742_-	hypothetical protein	NA	NA	NA	NA
WP_174891941.1\|1046075_1047206_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	5.1e-35	32.5

DBSCAN-SWA_9

1070050 : 1098917

Bacillus_phage(28.57%)

integrase,transposase

attL 1085735:1085750|attR 1099065:1099080

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010011610.1\|1070050_1070929_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_003688751.1\|1070952_1071240_-\|transposase	transposase	NA	NA	NA	NA
WP_003673983.1\|1071507_1071945_-	hypothetical protein	NA	NA	NA	NA
WP_003673985.1\|1071960_1072920_-	hypothetical protein	NA	NA	NA	NA
WP_013923736.1\|1073040_1074171_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	8.7e-35	32.2
WP_174891951.1\|1074345_1075365_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003673988.1\|1075424_1076201_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.1e-16	29.2
WP_174892028.1\|1076197_1077193_-	iron ABC transporter permease	NA	NA	NA	NA
WP_063164053.1\|1077185_1077635_-	hypothetical protein	NA	NA	NA	NA
WP_035161426.1\|1077765_1078167_+	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
WP_003667715.1\|1078166_1078412_+	MoaD/ThiS family protein	NA	NA	NA	NA
WP_003667716.1\|1078458_1079652_+	NarK/NasA family nitrate transporter	NA	NA	NA	NA
WP_072574765.1\|1079712_1080618_-	polyprenyl synthetase	NA	NA	NA	NA
WP_003663627.1\|1080622_1081591_-	hypothetical protein	NA	NA	NA	NA
WP_003663628.1\|1081596_1081869_-	hypothetical protein	NA	NA	NA	NA
WP_003673997.1\|1081964_1082618_-	response regulator transcription factor	NA	NA	NA	NA
WP_174891952.1\|1082610_1083666_-	sensor histidine kinase	NA	NA	NA	NA
WP_003663631.1\|1083816_1084101_-	hypothetical protein	NA	NA	NA	NA
WP_003667723.1\|1084090_1084663_-	NTP transferase domain-containing protein	NA	NA	NA	NA
WP_003674001.1\|1084662_1085151_-	molybdopterin-guanine dinucleotide biosynthesis protein B	NA	NA	NA	NA
WP_016496822.1\|1085129_1086347_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
1085735:1085750	attL	NA	NA	NA	NA
WP_016496823.1\|1086336_1086834_-	MogA/MoaB family molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
WP_142490513.1\|1086830_1087850_-	HesA/MoeB/ThiF family protein	NA	NA	NA	NA
WP_003674008.1\|1087995_1091661_+	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_003674010.1\|1091650_1093210_+	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	9.3e-19	42.2
WP_003663647.1\|1093202_1093781_+	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_003667738.1\|1093773_1094463_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_174892029.1\|1094579_1095800_-\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	2.5e-11	23.9
WP_013923736.1\|1095840_1096971_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	8.7e-35	32.2
WP_003674013.1\|1097270_1098161_-	DMT family transporter	NA	NA	NA	NA
WP_003663651.1\|1098269_1098917_-\|integrase	site-specific integrase	D2XR58	Bacillus_phage	2.5e-18	30.7
1099065:1099080	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1114897 : 1175121

Staphylococcus_phage(23.08%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072575358.1\|1114897_1116184_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_016496411.1\|1116420_1117344_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	5.1e-33	31.3
WP_013923736.1\|1117519_1118650_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	8.7e-35	32.2
WP_063164071.1\|1121075_1121432_-	hypothetical protein	NA	NA	NA	NA
WP_003674047.1\|1121565_1122213_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_003674050.1\|1123148_1123421_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003674052.1\|1123420_1123786_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_003674054.1\|1124338_1124701_+	LapA family protein	NA	NA	NA	NA
WP_016496837.1\|1124721_1125558_+	HAD family phosphatase	NA	NA	NA	NA
WP_003674056.1\|1125602_1126085_-	nucleoside 2-deoxyribosyltransferase	A0A0A7DMT2	Lactobacillus_phage	8.2e-59	65.6
WP_174891954.1\|1126160_1126316_-	hypothetical protein	NA	NA	NA	NA
WP_003674059.1\|1126317_1127181_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003674061.1\|1127256_1127895_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_072574984.1\|1127904_1128348_-	DUF3290 family protein	NA	NA	NA	NA
WP_041821675.1\|1128464_1128752_+	DUF454 family protein	NA	NA	NA	NA
WP_072575358.1\|1128861_1130148_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003674065.1\|1130294_1132619_-	hypothetical protein	NA	NA	NA	NA
WP_003674068.1\|1132797_1133652_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_016496839.1\|1133761_1135153_-	amino acid permease	NA	NA	NA	NA
WP_003674070.1\|1135437_1136343_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_003674072.1\|1136382_1138158_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
WP_072574989.1\|1138325_1139576_+	DUF2075 domain-containing protein	NA	NA	NA	NA
WP_003663794.1\|1139578_1140271_+	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_086131692.1\|1140334_1142848_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	5.9e-132	31.9
WP_003663797.1\|1142863_1143202_-	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	4.2e-09	34.2
WP_003674077.1\|1143194_1143572_-	CrcB family protein	NA	NA	NA	NA
WP_003663799.1\|1143679_1144072_+	VOC family protein	NA	NA	NA	NA
WP_063164079.1\|1144123_1144936_-	YdcF family protein	NA	NA	NA	NA
WP_063164080.1\|1144939_1146673_-	AarF/ABC1/UbiB kinase family protein	C7U092	Ostreococcus_tauri_virus	5.6e-33	26.1
WP_003674080.1\|1146812_1148174_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_143455706.1\|1148300_1149587_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_003666232.1\|1149754_1150183_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA
WP_003674082.1\|1150337_1151726_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_003674084.1\|1151774_1152230_-	DUF441 domain-containing protein	NA	NA	NA	NA
WP_174891955.1\|1152301_1152766_-	cupin domain-containing protein	NA	NA	NA	NA
WP_003674088.1\|1152815_1153292_-	flavodoxin	NA	NA	NA	NA
WP_003674090.1\|1153334_1154219_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_086135912.1\|1154264_1155155_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.3e-57	42.7
WP_003666221.1\|1155292_1155559_+	ACT domain-containing protein	NA	NA	NA	NA
WP_035160101.1\|1157098_1157623_-	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	2.5e-13	31.6
WP_003674096.1\|1157782_1158628_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_003674098.1\|1158601_1159450_-	glycosyltransferase family 8 protein	NA	NA	NA	NA
WP_086131689.1\|1159548_1160205_+	HD domain-containing protein	S4W232	Pandoravirus	3.8e-06	26.3
WP_003674102.1\|1160268_1160913_-	hypothetical protein	NA	NA	NA	NA
WP_086135911.1\|1160909_1161788_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	7.8e-15	36.6
WP_086135910.1\|1162004_1163687_+	NFACT family protein	M1I5P2	Paramecium_bursaria_Chlorella_virus	1.2e-08	38.0
WP_086118341.1\|1163735_1166213_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_086118342.1\|1166209_1167295_-	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_086135909.1\|1167371_1168283_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	1.9e-11	28.7
WP_086118343.1\|1168286_1168733_-	signal peptidase II	NA	NA	NA	NA
WP_003667861.1\|1168733_1169141_-	hypothetical protein	NA	NA	NA	NA
WP_003674114.1\|1169165_1169561_+	ribonuclease HI family protein	NA	NA	NA	NA
WP_174891956.1\|1169744_1170899_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_174891957.1\|1171060_1172443_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.0e-29	26.3
WP_086135998.1\|1172959_1173436_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_072575358.1\|1173834_1175121_+\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

1192729 : 1240428

Staphylococcus_phage(31.25%)

integrase,transposase

attL 1238929:1238946|attR 1241138:1241155

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174891963.1\|1192729_1193905_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0ICY9	Lactobacillus_phage	1.0e-118	55.4
WP_174892030.1\|1193904_1194303_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	8.6e-46	62.1
WP_086135861.1\|1195252_1196131_+	ROK family protein	NA	NA	NA	NA
WP_086135860.1\|1196205_1197180_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003666171.1\|1197207_1197948_-	LrgB family protein	NA	NA	NA	NA
WP_003666169.1\|1197940_1198360_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_003674135.1\|1198561_1199293_-	LytTR family transcriptional regulator DNA-binding domain-containing protein	NA	NA	NA	NA
WP_041821694.1\|1199273_1201037_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.7e-59	29.8
WP_003674137.1\|1201037_1201904_-	SPFH domain-containing protein	NA	NA	NA	NA
WP_079376029.1\|1201922_1203290_-	RsmF rRNA methyltransferase first C-terminal domain-containing protein	NA	NA	NA	NA
WP_079376032.1\|1203434_1204247_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_003666157.1\|1204304_1204541_-	cytochrome b5	NA	NA	NA	NA
WP_003674140.1\|1205008_1205680_+	response regulator transcription factor	NA	NA	NA	NA
WP_003674141.1\|1205873_1206764_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003667917.1\|1206780_1207113_-	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_003674143.1\|1207145_1208555_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_003674144.1\|1208547_1209009_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_003674145.1\|1208995_1210234_-	cysteine desulfurase	Q2XUY6	environmental_halophage	1.8e-105	45.4
WP_003674148.1\|1210214_1211504_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_003666143.1\|1211515_1212313_-	Fe-S cluster assembly ATPase SufC	A0A2R8FFL6	Cedratvirus	2.8e-11	26.4
WP_003674151.1\|1212539_1212743_+	ferrous iron transport protein A	NA	NA	NA	NA
WP_016496871.1\|1212744_1214736_+	ferrous iron transport protein B	NA	NA	NA	NA
WP_003667936.1\|1214742_1214901_+	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA
WP_086141193.1\|1214966_1216388_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.4e-74	34.4
WP_003667939.1\|1216402_1217224_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
WP_003674156.1\|1217256_1217631_+	PaaI family thioesterase	NA	NA	NA	NA
WP_016496874.1\|1217978_1218554_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003667944.1\|1218759_1219944_-	MFS transporter	NA	NA	NA	NA
WP_174891964.1\|1220112_1223001_+	YfhO family protein	NA	NA	NA	NA
WP_086131402.1\|1223074_1223800_+	potassium channel family protein	A0A1B0Y2S3	Lactobacillus_phage	3.3e-27	45.0
WP_035157468.1\|1223845_1224304_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.3e-26	42.0
WP_063164093.1\|1224311_1225493_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.2e-92	46.9
WP_063164094.1\|1225492_1226095_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.3e-33	44.0
WP_117114954.1\|1226087_1227155_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.2e-41	32.5
WP_016496813.1\|1227229_1228606_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.0e-29	39.5
WP_079376020.1\|1228979_1229924_-	pyrimidine-specific ribonucleoside hydrolase RihA	NA	NA	NA	NA
WP_063164097.1\|1230162_1231338_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0ICY9	Lactobacillus_phage	1.0e-118	55.4
WP_041816984.1\|1231337_1231736_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.0e-46	62.9
WP_174891965.1\|1232224_1234492_-	phospholipase	NA	NA	NA	NA
WP_003667958.1\|1234847_1235087_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_174891966.1\|1235143_1238269_-	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	3.7e-67	29.3
WP_174892031.1\|1238321_1238906_-	restriction endonuclease subunit S	NA	NA	NA	NA
1238929:1238946	attL	NA	NA	NA	NA
WP_174891967.1\|1239459_1240428_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	1.1e-33	28.6
WP_174891967.1\|1239459_1240428_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	1.1e-33	28.6
1241138:1241155	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1892159 : 1935911

Klosneuvirus(20.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003674580.1\|1892159_1894187_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.0e-89	36.2
WP_003674578.1\|1894264_1895113_-	DUF72 domain-containing protein	NA	NA	NA	NA
WP_003674572.1\|1895562_1896261_-	NAD-dependent protein deacylase	S5M4R0	Bacillus_phage	9.2e-19	30.4
WP_003674570.1\|1896266_1897226_-	hypothetical protein	NA	NA	NA	NA
WP_003674568.1\|1897218_1898481_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
WP_086131394.1\|1898473_1899415_-	Ppx/GppA family phosphatase	NA	NA	NA	NA
WP_003674565.1\|1899558_1900581_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_003674562.1\|1900858_1901818_+	site-specific DNA-methyltransferase	A0A0H3UZ66	Geobacillus_virus	2.5e-14	28.2
WP_003665559.1\|1901869_1902313_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	8.4e-26	44.4
WP_086131393.1\|1902400_1904719_-	AAA family ATPase	NA	NA	NA	NA
WP_003674558.1\|1904731_1905901_-	cation:proton antiporter	NA	NA	NA	NA
WP_174892005.1\|1906183_1907545_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	3.5e-22	25.3
WP_035161517.1\|1907507_1908980_-	amino acid permease	NA	NA	NA	NA
WP_003674553.1\|1909277_1909919_+	endonuclease III	NA	NA	NA	NA
WP_003674551.1\|1909930_1910221_+	FMN-binding protein	NA	NA	NA	NA
WP_174892006.1\|1910302_1911499_-	MFS transporter	A0A2H4UVM2	Bodo_saltans_virus	2.0e-05	20.4
WP_174892007.1\|1911613_1912900_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_063164136.1\|1913135_1914104_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_003674547.1\|1914244_1915177_-	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003671339.1\|1915700_1916552_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003674545.1\|1916564_1917629_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-23	31.3
WP_003665503.1\|1917621_1918311_+	ABC transporter permease	NA	NA	NA	NA
WP_003674542.1\|1918329_1919475_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_035161516.1\|1919821_1921159_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_003674537.1\|1921310_1921739_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_003674534.1\|1921810_1922449_-	ABC transporter permease	NA	NA	NA	NA
WP_003674533.1\|1922441_1923212_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-25	38.0
WP_003674531.1\|1923186_1923852_-	ABC transporter permease	NA	NA	NA	NA
WP_003674529.1\|1923918_1924818_-	glycine/betaine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_016496437.1\|1924953_1926372_-\|transposase	ISLre2-like element ISLre2 family transposase	NA	NA	NA	NA
WP_003674526.1\|1926546_1927002_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_072575172.1\|1927004_1927859_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_003674522.1\|1928074_1929265_-	phosphopentomutase	NA	NA	NA	NA
WP_086131390.1\|1929368_1931177_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.3e-69	29.9
WP_003674517.1\|1931634_1932369_-\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_063164073.1\|1932475_1933444_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_003674515.1\|1933523_1934228_-	hypothetical protein	NA	NA	NA	NA
WP_003667139.1\|1934337_1934658_-	membrane protein	NA	NA	NA	NA
WP_063164051.1\|1934780_1935911_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.3e-35	32.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP054661

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054661_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054661_1

8659-8840

Orphan

Consensus_repeat	Method
ATCCCTTGTGGCCGTAGGTCGGAACACAGACCTACA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP054661_1

>merge|NZ_CP054661|1|8659-8840|CRISPRCasFinder
ATCCCTTGTGGCTGTAGGGTTAAACACAGACCTACAATCATTTTTAGATTTTGCATCTCTAAAATACTAAACTCTCTAATCCCTTGTGGCCGTAGGTCGGAACACAGACCTACACCGAAAATCAACAAAAATTGTAAAACCGCCGTATCCCTTGTGGCCGTAGGTCGGAACACAGACCTACA

>NZ_CP054661|1|1|8659-8840|CRISPRCasFinder
ATCCCTTGTGGCTGTAGGGTTAAACACAGACCTACA	ATCATTTTTAGATTTTGCATCTCTAAAATACTAAACTCTCTA
ATCCCTTGTGGCCGTAGGTCGGAACACAGACCTACA	CCGAAAATCAACAAAAATTGTAAAACCGCCGT
ATCCCTTGTGGCCGTAGGTCGGAACACAGACCTACA

>NZ_CP054661.1|WP_174892077.1|5600_8306_-|hypothetical-protein
MEKEDFNKKLSRKQSKLTRYSHSRNTVYRAILTMLDAIDTDNIKQSDYGDTLKLYDLVLDLMVSDSSRLSAKSRMFFVSEHWSYMVNDPYIVDTDNYGYSPYYQYALGSDDKPLNLGDQFGEMAHLDVESDGSRKARRSKVCPDIKFNTPDKWQFGSAWNDDGYPTKFDKNGRPVLDGWSKHEYDKLDDFASWLTRNGQGKTRNRVQLFLSFHTLDSAENVVDAVAEQLAAHAHAFIQTANAISRYTLMQHLDFDFDFYISTFNWLATSNVDHIIQRGLTFLRQLAGAVKNYQLASDKHETLLYLVHDSRSAVKADKPSYRPSWVFSWLPEQSDASYSSISGAWDDTPVNLGDQAIVNNLHSAINQENNAVSMVGRTKNEHKRFTMRDVATIREVANGNRYYVQPIIVAFMNLVYSKRVEITDFWDLLRCAVNQDDYIRLTTMPNSSKKPSLTSLYDKASKAYVRDKQLNGNVHKQVFMVLGQMGGTGKSRLAAELAKYYDCGRQPLTATHKTTDLTFDPFQDYAGQQSVILDEVAGNDFSLPDLKGLLDPYSKNAQGSRYNNVSLWNVKRLFLTAVYSDGLTGYVKDVLSHAPGATNGGYLEKVLDVNGKPTWKIKTDDASQQRYMSDFTQLSRRLGVLITVNHSKTATQIVVSIRNAKDADAVSLVGNSLRFVHTKETSFRVNYRITDAVSADKMATLARKIAKCVNLLQNKANAVYEQHGTACFVDDYDHEFIDSGETLGLRDESPLTVIETPAKLHERHQESQLSDARNQLQSVFKDVMSPLTRRDINSSGNGVKFTLNNLVDVLNYWYSVDVTENAQSLDWIVDDSNDNLGSRLDVTMNLLSVFESFGFRDVEDCQKAVNDYLLLVTGVDNALVLKDSDDTEPTGSWSDYVESLAN
>NZ_CP054661.1|WP_003676769.1|5158_5413_-|hypothetical-protein
MSKKLTKEEQELADAKAKIERKYARIAKRRLNKINQKLFPDVDLLGMSKSEFERLLDDSKIVMKQQSDNKFTPLNPVEDDNKAF
>NZ_CP054661.1|WP_003676770.1|4406_4769_-|hypothetical-protein
MKDTHVRLSDEENQKLARLSAKLGLSGNEIIRRLLDNADEVTLKVIDKSTKQNDLILANLKQQNWLLSNLTNNLNQVTHFLNQHQNDLTLDEMKTLATIFNQFYRSVKELRKELIGNGRK
>NZ_CP054661.1|WP_174892076.1|3052_4420_-|relaxase/mobilization-nuclease-domain-containing-protein
MVVSKTIKSTNATAALRYILNDTPKVQNETGHRVLAVASQNIDKDYADKIDPLYSAAQFNVIRHSTKKYKLHGKDKKTQVEHLIFSFSNKDFDLSNVTTQAKQALKLVGDYLKERLGPSSQWVGVAQDDNEGHNLHVHVAVNSVNVDGKVFNTNLVRQTLPDGIMNTFNDYLDNHFEQVTGRQFQRVQPQPVRATDTTVSSKERNMKANRSSANSWKDDLKVILDEAMTNNVDIQGFLDQLAANGVTVTEKPHKMGKNADGSVKKRTSYHYLYVDTRGKQHRSVDFAITRQGAVRGLGEDYIPDNIQRQLELNATKQADSTGKTAEDDLDSIINNIENDLNDAVSAAVSANAQSNTSKPSMTSISSVEPMVAAANSDEVATSIESVNQRKRRNLQERVNNEFERTDGPRLIMQTVSRSKKPTKEEIAEAQNAQKINHNGPSSSSTGSENSSDLEL
>NZ_CP054661.1|WP_174892075.1|2541_2952_-|hypothetical-protein
MRTQLIKRGFKPAETGENNSKLYSDKAFNTMRDYYRSKSKNSSNRQPQTTRSELIESKNAQIEQLKREVELLTAQLHTKDKQIDAMTALAESNAQLTAQAHTLDASHRLEDSTTASQNESKTVSEEPHGFFWRIFH
>NZ_CP054661.1|WP_003676765.1|63_2529_-|hypothetical-protein
MAELQKHDYELDEQEEFYKQYLPLVNSDLDPVDVQVHSTDGLIGDLLLEFKPSIKDVNAVLFQAIKYLSHFRLNGQAVPSNILLISYDDGTAYYYDANAYLADIEKVYTRAASKDVTGQFVADDPKAIWHYNDSPVDEDSMIQLMKKAYKRDQDGNQQWVAVHIDSDNIIGWATTYYNENKGARKADFLGDDAITGEIRQPRKLKGRILPYTGKDNAAFQYIMDKLNDYVERADLGAFYTPMPYATKSNELVYDAIRRFQQSGNDDYIILDRCAGTGNLESTLNDDVPDDIDDKDVLSHVIVNTYEFFEYKVLKQRLGDQVRNIIPPVANFTDGTVEGSDALSQEFVENPIIKKYVDNAKCTIIIYENPPFAETNSIEHQKRHSGKSSSKKWKYNYVTMQAKQELTGARSNDMSNVFIWSAFHYYLRQSTDSAIIFSPLKYWKLGEDWFDFKAEKAFAFNRKYFHAVRQMVNGCVLWLNETANSTDNGGESLTLTPYDIKDAEAPNYDTGTIQELNQTVTAKRIHNNFSSAYYDEIDEPNDVIQKKEKPYPLHPKAIWSAFDGTEARDKTLSSNAKYNPDIVAYLKAGGSTFENDSSNAHLTRNTEHNAHGFHLRVSNYLTKLPMFAANWWKAYRPNWWEIGVYYRSGDGKVQFETDVENGKLDQWLNRVLFYTCLENYNKIRSLEGSDGRWYYNELCLDDNKGKVDNPDDKSEPETLANQQLKDFLTNLNDDESKMYKLWQRILKEAKATNNYDKRLNYGIYQINDELNTSHKETNSRGKTTTVYDYPQLNGDLNTMRGLIKDYYHKYIMPNLFKYEFIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054661_1	1.1\|8695\|42\|NZ_CP054661\|CRISPRCasFinder	8695-8736	42	NZ_CP054661	Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence	8695-8736	0	1.0
NZ_CP054661_1	1.2\|8773\|32\|NZ_CP054661\|CRISPRCasFinder	8773-8804	32	NZ_CP054661	Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence	8773-8804	0	1.0
NZ_CP054661_1	1.2\|8773\|32\|NZ_CP054661\|CRISPRCasFinder	8773-8804	32	KX397366	Erwinia phage vB_EamM_ChrisDB, complete genome	173963-173994	6	0.812
NZ_CP054661_1	1.2\|8773\|32\|NZ_CP054661\|CRISPRCasFinder	8773-8804	32	NC_004320	Corynebacterium efficiens YS-314 plasmid pCE3, complete sequence	4939-4970	7	0.781
NZ_CP054661_1	1.1\|8695\|42\|NZ_CP054661\|CRISPRCasFinder	8695-8736	42	NZ_LN906636	Lactobacillus reuteri plasmid p53608_2, complete genome, strain ATCC 53608	8685-8726	8	0.81
NZ_CP054661_1	1.2\|8773\|32\|NZ_CP054661\|CRISPRCasFinder	8773-8804	32	NZ_CP044476	Acinetobacter schindleri strain HZE33-1 plasmid pHZE33-1-2, complete sequence	963-994	8	0.75
NZ_CP054661_1	1.2\|8773\|32\|NZ_CP054661\|CRISPRCasFinder	8773-8804	32	MT311968	Streptococcus phage phi29961, complete genome	2967-2998	10	0.688
NZ_CP054661_1	1.2\|8773\|32\|NZ_CP054661\|CRISPRCasFinder	8773-8804	32	MT932329	Campylobacter phage F379, complete genome	89885-89916	11	0.656

1. spacer 1.1|8695|42|NZ_CP054661|CRISPRCasFinder matches to NZ_CP054661 (Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence) position: , mismatch: 0, identity: 1.0

atcatttttagattttgcatctctaaaatactaaactctcta	CRISPR spacer
atcatttttagattttgcatctctaaaatactaaactctcta	Protospacer
******************************************

2. spacer 1.2|8773|32|NZ_CP054661|CRISPRCasFinder matches to NZ_CP054661 (Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence) position: , mismatch: 0, identity: 1.0

ccgaaaatcaacaaaaattgtaaaaccgccgt	CRISPR spacer
ccgaaaatcaacaaaaattgtaaaaccgccgt	Protospacer
********************************

3. spacer 1.2|8773|32|NZ_CP054661|CRISPRCasFinder matches to KX397366 (Erwinia phage vB_EamM_ChrisDB, complete genome) position: , mismatch: 6, identity: 0.812

ccgaaaatcaacaaaaattgtaaaaccgccgt	CRISPR spacer
ctgaccgtccacaaaaattgtaaagccgccgt	Protospacer
*.**  .** **************.*******

4. spacer 1.2|8773|32|NZ_CP054661|CRISPRCasFinder matches to NC_004320 (Corynebacterium efficiens YS-314 plasmid pCE3, complete sequence) position: , mismatch: 7, identity: 0.781

ccgaaaatcaacaaaaattgtaaaac-cgccgt	CRISPR spacer
ccgagaatcaacaaaaattttaatgctcacca-	Protospacer
****.************** *** .* *.**.

5. spacer 1.1|8695|42|NZ_CP054661|CRISPRCasFinder matches to NZ_LN906636 (Lactobacillus reuteri plasmid p53608_2, complete genome, strain ATCC 53608) position: , mismatch: 8, identity: 0.81

atcatttttagattttgcatctctaaaatactaaactctcta	CRISPR spacer
cgtatttttggattttgcaactctaaaatactaaactcttgt	Protospacer
  .******.********* *******************.

6. spacer 1.2|8773|32|NZ_CP054661|CRISPRCasFinder matches to NZ_CP044476 (Acinetobacter schindleri strain HZE33-1 plasmid pHZE33-1-2, complete sequence) position: , mismatch: 8, identity: 0.75

ccgaaaatcaacaaaaattgtaaaaccgccgt	CRISPR spacer
acagaaatcaccaataattgtaaaaccaactt	Protospacer
 *..****** *** ************. * *

7. spacer 1.2|8773|32|NZ_CP054661|CRISPRCasFinder matches to MT311968 (Streptococcus phage phi29961, complete genome) position: , mismatch: 10, identity: 0.688

ccgaaaatcaacaaaaattgtaaaaccgccgt	CRISPR spacer
aagaaaatcaagaaaaattggaaaaacttgaa	Protospacer
  ********* ******** **** * . .

8. spacer 1.2|8773|32|NZ_CP054661|CRISPRCasFinder matches to MT932329 (Campylobacter phage F379, complete genome) position: , mismatch: 11, identity: 0.656

ccgaaaatcaacaaaaattgtaaaaccgccgt	CRISPR spacer
gataaaatcaaaaaaaaatgtaaaacataaaa	Protospacer
   ******** ***** ********    .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054658

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP054657

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP054661

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection