CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054717	Salmonella enterica strain 85-0120 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	2	0
NZ_CP054716	Salmonella enterica strain 85-0120 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP054715	Salmonella enterica strain 85-0120 chromosome, complete genome	2 crisprs	DEDDh,cas3,WYL,csa3,DinG	0	1	9	0
NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	2 crisprs	DEDDh,cas14j,c2c9_V-U4	1	3	4	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054718_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054718_1

76016-76101

TypeV

Consensus_repeat	Method
GGTTAACCCTGCGGGCGGGGATAGGTCG	CRISPRCasFinder

1 spacers

c2c9_V-U4,cas14j

The CRISPR arrays of NZ_CP054718_1

>merge|NZ_CP054718|1|76016-76101|CRISPRCasFinder
GGTTAACCCTGCGGGCGGGGATAGGTCGCAAGAAAGTTCTAGGAAGCTGGCTGAAGCGGGTTAACCCTGCGGGCGGGGATAGGTCG

>NZ_CP054718|1|1|76016-76101|CRISPRCasFinder
GGTTAACCCTGCGGGCGGGGATAGGTCG	CAAGAAAGTTCTAGGAAGCTGGCTGAAGCG
GGTTAACCCTGCGGGCGGGGATAGGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054718.1\|WP_070799248.1\|70241_70838_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP054718.1\|WP_023197246.1\|74465_74693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_023197247.1\|78715_78880_-\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_174896864.1\|74659_75232_+\|helix-turn-helix-domain-containing-protein	cas14j	-	gnl\|CDD\|378838
NZ_CP054718.1\|WP_174896873.1\|84229_84685_+\|tail-fiber-assembly-protein	unknown	unknown	gnl\|CDD\|367075
NZ_CP054718.1\|WP_174896865.1\|75407_75626_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|366606
NZ_CP054718.1\|WP_023197247.1\|74304_74469_+\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_174896863.1\|80429_81611_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
NZ_CP054718.1\|WP_174896866.1\|77310_78525_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP054718.1\|WP_079820990.1\|70895_71135_+\|DNA-polymerase-V	unknown	unknown	unknown
NZ_CP054718.1\|WP_109909712.1\|78932_79046_-\|ash-family-protein	unknown	unknown	gnl\|CDD\|371132
NZ_CP054718.1\|WP_000506738.1\|71137_71446_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182350
NZ_CP054718.1\|WP_000506738.1\|81741_82050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182350
NZ_CP054718.1\|WP_174896874.1\|75592_75847_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP054718.1\|WP_174896867.1\|82943_84149_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227618
NZ_CP054718.1\|WP_109909712.1\|74138_74252_+\|ash-family-protein	unknown	unknown	gnl\|CDD\|371132
NZ_CP054718.1\|WP_079820990.1\|82052_82292_-\|DNA-polymerase-V	unknown	unknown	unknown
NZ_CP054718.1\|WP_174896863.1\|71576_72758_-\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
NZ_CP054718.1\|WP_023197246.1\|78491_78719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_023197248.1\|79263_80433_+\|plasmid-partitioning-protein-SopA	unknown	unknown	gnl\|CDD\|107201

Protein	Function_ID	Function_description	E-value
NZ_CP054718.1\|WP_070799248.1\|70241_70838_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.27616e-66
NZ_CP054718.1\|WP_174896874.1\|75592_75847_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.34135e-11
NZ_CP054718.1\|WP_174896864.1\|74659_75232_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378838	pfam12323, HTH_OrfB_IS605, Helix-turn-helix domain. This is the N terminal helix-turn-helix domain of Transposase_2 pfam01385.	1.24891e-15
NZ_CP054718.1\|WP_174896865.1\|75407_75626_+\|transposase	gnl\|CDD\|366606	pfam01385, OrfB_IS605, Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.	2.18607e-12
NZ_CP054718.1\|WP_174896866.1\|77310_78525_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.24029e-57
NZ_CP054718.1\|WP_023197248.1\|79263_80433_+\|plasmid-partitioning-protein-SopA	gnl\|CDD\|107201	PHA02519, PHA02519, plasmid partition protein SopA; Reviewed.	0
NZ_CP054718.1\|WP_109909712.1\|78932_79046_-\|ash-family-protein	gnl\|CDD\|371132	pfam10554, Phage_ASH, Ash protein family. This family was identified by Iyer and colleagues. It includes the Ash protein from bacteriophage P4.	5.62225e-09
NZ_CP054718.1\|WP_000506738.1\|71137_71446_+\|hypothetical-protein	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	0.00813881
NZ_CP054718.1\|WP_174896867.1\|82943_84149_+\|hypothetical-protein	gnl\|CDD\|227618	COG5301, COG5301, Phage-related tail fibre protein [General function prediction only].	3.65684e-10
NZ_CP054718.1\|WP_109909712.1\|74138_74252_+\|ash-family-protein	gnl\|CDD\|371132	pfam10554, Phage_ASH, Ash protein family. This family was identified by Iyer and colleagues. It includes the Ash protein from bacteriophage P4.	5.62225e-09
NZ_CP054718.1\|WP_174896873.1\|84229_84685_+\|tail-fiber-assembly-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	8.11864e-34
NZ_CP054718.1\|WP_174896863.1\|71576_72758_-\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	6.9371e-146
NZ_CP054718.1\|WP_174896863.1\|80429_81611_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	6.9371e-146
NZ_CP054718.1\|WP_000506738.1\|81741_82050_-\|hypothetical-protein	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	0.00813881

>NZ_CP054718.1|WP_174896874.1|75592_75847_+|transposase
MPNGASRKRGLNRSLASVSLGEFFRQLEYKCAWRGVALLKADRWEPSSKRCSSCGEINENLTLADRRWQCRCAAQNITVTLMPR
>NZ_CP054718.1|WP_174896865.1|75407_75626_+|transposase
MKQKRRVAQLHERISAVRRDFLHKLTHRLTCENQALAVEELNVRGMMAAPKPKPDADNPVRTCRTAPAASAG
>NZ_CP054718.1|WP_174896864.1|74659_75232_+|helix-turn-helix-domain-containing-protein
MGRPDPQGTPLMLYAVRVRLYPNAAQREFFARTFGCCRWVYNDALAYCQAMYEAGSSRPSAYDLMKRLPALKTEHPWLGEADSQALKQACADLDSAYRNFFRRVKNGETPGFPRFKSKHRGDATYTATAAASIALEPRQIKLPKAGWVRCRGVREWDGRIKRTTVRQTPTGKYYATVLIDNGGSYLRSRR
>NZ_CP054718.1|WP_023197246.1|74465_74693_+|hypothetical-protein
MNQVQLNEFGLAESLESALAQINALASVAQHTISSAGGSAYLNEAAQLLLTIKNLSADAERYRAEWEDLIPRVRR
>NZ_CP054718.1|WP_023197247.1|74304_74469_+|host-cell-division-inhibitor-Icd-like-protein
MYQFKFAAICRTDRKNHIHHLSTVADCERAARRQLSGKFILFFQARLPVAGGAV
>NZ_CP054718.1|WP_109909712.1|74138_74252_+|ash-family-protein
MPVSHTHRIMVAQAGQLSGWPVSFGTGIANPVWATTS
>NZ_CP054718.1|WP_174896863.1|71576_72758_-|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKRAPVMKNAPKINFDSAPTATITASDNKPTAPAVANLSERVRNMVGNHVTLPVCGRDVTFTLETVAAEMVERATMVWSGNERDQALLTQAALDDLIPSFLTSGQQNPAFGRKISGIIEVADGSRRRQTAIYTHSEYRVLVGDLDDEQMAWLSTIGNSYRQTSAYERGKRYARRLKNEFGDNVSKLAEAENISRKIIMRCIKTAELPREIIALFSNPNELSARAGESLAKVYAGNEDAVLAFAQHLAKRQKGGESFETDEILKQLHDVAEKPTKTATRERLFGKGIKAKYKGDSVSFQLNNVSPVVIQKIETLLKEYQEEQQKLVSEAVDDAFVEIDTVTNFIRAAAAGINYDIPANELQTMIPYSRTVLKEHINEADRIKRIADEITRRYII
>NZ_CP054718.1|WP_000506738.1|71137_71446_+|hypothetical-protein
MGFPSPASDYVEPRLTVDILCGINANSRIVNTSDGYAVVDVSLIQRQGDTVLIRSDGALRFAKIMGQALIIDDGEAIEGEALDGVVVIGKVTYFINRINFSD
>NZ_CP054718.1|WP_079820990.1|70895_71135_+|DNA-polymerase-V
MPRRYEVEIAWRKAIILEPSGRKTVTTGRFVQELEKVNHHWSLREANRWIEWHVTTFRDISTQEGENRTFQLFNPNGGL
>NZ_CP054718.1|WP_070799248.1|70241_70838_+|recombinase-family-protein
MQIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLTAGDTLVVWKLDRLGRSMRHLVVLIEELRERGVNFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTRAGLEAARAQGRIGGRRPKLTPEQWAQAGRLIGAGVPRQKVAIIYDVGLSTLYKKFPVGKSVSYTGVEIESYLPS
>NZ_CP054718.1|WP_174896866.1|77310_78525_-|transposase
MGRPDPQGTPLMLYAVRVRLYPNAAQREFFARTFGCCRWVYNDALAYCQAMYEAGSSRPSAYDLMKRLPALKTEHPWLGEADSQALKQACADLDSAYRNFFRRVKNGETPGFPRFKSKHRGDATYTATAAASIALEPRQIKLPKAGWVRCRGVREWDGRIKRTTVRQTPTGKYYATVLIDNGRELPAQPTVNLNPLGIDVGCKTEGFTHQFAALSTGEIVTAPAEYKRQMKRLRRAQRRLARKQKGSASRMKQKRRVAQLHERISAVRRDFLHKLTHRLTCENQALAVEELNVRGMMAAPKPKPDADNPGAYLPNGASRKRGLNRSLASVSLGEFFRQLEYKCAWRGVALLKADRWEPSSKRCSSCGEINENLTLADRRWQCPVCGAEHHRDINAAVNIAARAV
>NZ_CP054718.1|WP_023197246.1|78491_78719_-|hypothetical-protein
MNQVQLNEFGLAESLESALAQINALASVAQHTISSAGGSAYLNEAAQLLLTIKNLSADAERYRAEWEDLIPRVRR
>NZ_CP054718.1|WP_023197247.1|78715_78880_-|host-cell-division-inhibitor-Icd-like-protein
MYQFKFAAICRTDRKNHIHHLSTVADCERAARRQLSGKFILFFQARLPVAGGAV
>NZ_CP054718.1|WP_109909712.1|78932_79046_-|ash-family-protein
MPVSHTHRIMVAQAGQLSGWPVSFGTGIANPVWATTS
>NZ_CP054718.1|WP_023197248.1|79263_80433_+|plasmid-partitioning-protein-SopA
MNLKERLDELIARGHTMTKMIAQAQFGDDSPEARTITRRWGITEAAELIGVTPQTIRNAEESGKLPPADTVVRGRVPQRAGYTIGQINDMRDHFGTRPSRPDGQSPAVLAIAAHKGGAFKTSTSVHMAQWAALQGLRVLLIDATDPQATASLYHGYVPDLHIHAEDTLLPYYLGERDNAEYAIKPTCWPNLDIIPSCLAIHRIESEIEVLEAAGKLPVPSHLLLRAAIESVWDSYDLIVIDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSSLQFFTMLRDLIANVDLGGFEPDVRVLVTKYSSAVGNQSAWMDEQIRNAWGGMVLKEVVRLTDEVGKGQVRMRTVFEQAANQRSTPTAWRNAVAIWEPVCREIYERLIKTRWENNK
>NZ_CP054718.1|WP_174896863.1|80429_81611_+|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKRAPVMKNAPKINFDSAPTATITASDNKPTAPAVANLSERVRNMVGNHVTLPVCGRDVTFTLETVAAEMVERATMVWSGNERDQALLTQAALDDLIPSFLTSGQQNPAFGRKISGIIEVADGSRRRQTAIYTHSEYRVLVGDLDDEQMAWLSTIGNSYRQTSAYERGKRYARRLKNEFGDNVSKLAEAENISRKIIMRCIKTAELPREIIALFSNPNELSARAGESLAKVYAGNEDAVLAFAQHLAKRQKGGESFETDEILKQLHDVAEKPTKTATRERLFGKGIKAKYKGDSVSFQLNNVSPVVIQKIETLLKEYQEEQQKLVSEAVDDAFVEIDTVTNFIRAAAAGINYDIPANELQTMIPYSRTVLKEHINEADRIKRIADEITRRYII
>NZ_CP054718.1|WP_000506738.1|81741_82050_-|hypothetical-protein
MGFPSPASDYVEPRLTVDILCGINANSRIVNTSDGYAVVDVSLIQRQGDTVLIRSDGALRFAKIMGQALIIDDGEAIEGEALDGVVVIGKVTYFINRINFSD
>NZ_CP054718.1|WP_079820990.1|82052_82292_-|DNA-polymerase-V
MPRRYEVEIAWRKAIILEPSGRKTVTTGRFVQELEKVNHHWSLREANRWIEWHVTTFRDISTQEGENRTFQLFNPNGGL
>NZ_CP054718.1|WP_174896867.1|82943_84149_+|hypothetical-protein
MISTPQKAEIMPSTLYFCIFRNVGLRETINRAADALQKSQNGADIPDKGLFAQNISAAVAFSGGIHIGGDSGSWTTAEFITWLESQGAFNHPYWMCKGSWAYASNKVITDTGCGIICLAGAVVEVMGTGGAITIRVTTPTTTSGGGVPSAQFIYINHGDGYAPGWRREFSRTGDGMTGNLYLKNEGRINLAIVDEAETPRMWLFKDKGGDGVHINNGNDGGGDFIFGKDGGFYASAVRAGIGRKLAVTSDNNSALSARFNLCGGGDRPTVIELDDDQGWHLYSQRNPDGSIRFMVNGEIFTTGSIHAGANTISTDGNIYGSLWGGWLNDWINNTIINRFVKDIRLGGIEYAQAWNGPGFNDTPGYVITGVTNGNSDELIDGVHRRPLQKLIGGIWYNVTSI
>NZ_CP054718.1|WP_174896873.1|84229_84685_+|tail-fiber-assembly-protein
MWLYSEDEKNWYEEQKNFAADTLKIAYDQNGVILNISKDVSTINPTGLSVVELPDITANRRADIYGGWMFDGKQVIKRIYTPEELRQQAEVKKVKLLEEAENVITPLARAVKLKIATDEEIKQLEAWELYSVMVNRVDTSNPDWPEKPASQ

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Crispr_ID: NZ_CP054718_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054718_2

77026-77171

TypeV

Consensus_repeat	Method
CGACCTATCCCCGCCCGCAGGGGTTAACCTCCGGC	PILER-CR

2 spacers

c2c9_V-U4,cas14j

The CRISPR arrays of NZ_CP054718_2

>merge|NZ_CP054718|2|77026-77171|PILER-CR
CCTGCCCGCAGGGATTAACCTCCGGCCGGTCGAACATCCACAGCAAATTGACCGACCTATCCCCGCCCGCAGGGGTTAACCCGCTTCAGCCAGCTTCCTAGAACTTTCTTGCGACCTATCCCCGCCCGCAGGGGTTAACCTCTGGC

>NZ_CP054718|2|1|77026-77171|PILER-CR
CCTGCCCGCAGGGATTAACCTCCGGCCGGTCGAAC	ATCCACAGCAAATTGACCGACCTATC
CCCGCCCGCAGGGGTTAACCCGCTTCAGCCAGCTT	CCTAGAACTTTCTTGCGACCTATCCCCGCC
CGCAGGGGTTAACCTCTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054718.1\|WP_070799248.1\|70241_70838_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP054718.1\|WP_023197246.1\|74465_74693_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_023197247.1\|78715_78880_-\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_174896864.1\|74659_75232_+\|helix-turn-helix-domain-containing-protein	cas14j	-	gnl\|CDD\|378838
NZ_CP054718.1\|WP_174896873.1\|84229_84685_+\|tail-fiber-assembly-protein	unknown	unknown	gnl\|CDD\|367075
NZ_CP054718.1\|WP_174896865.1\|75407_75626_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|366606
NZ_CP054718.1\|WP_023197247.1\|74304_74469_+\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_174896863.1\|80429_81611_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
NZ_CP054718.1\|WP_174896866.1\|77310_78525_-\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP054718.1\|WP_079820990.1\|70895_71135_+\|DNA-polymerase-V	unknown	unknown	unknown
NZ_CP054718.1\|WP_109909712.1\|78932_79046_-\|ash-family-protein	unknown	unknown	gnl\|CDD\|371132
NZ_CP054718.1\|WP_000506738.1\|71137_71446_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182350
NZ_CP054718.1\|WP_000506738.1\|81741_82050_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182350
NZ_CP054718.1\|WP_174896874.1\|75592_75847_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP054718.1\|WP_174896867.1\|82943_84149_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227618
NZ_CP054718.1\|WP_109909712.1\|74138_74252_+\|ash-family-protein	unknown	unknown	gnl\|CDD\|371132
NZ_CP054718.1\|WP_079820990.1\|82052_82292_-\|DNA-polymerase-V	unknown	unknown	unknown
NZ_CP054718.1\|WP_174896863.1\|71576_72758_-\|ParB/RepB/Spo0J-family-plasmid-partition-protein	unknown	unknown	gnl\|CDD\|184254
NZ_CP054718.1\|WP_023197246.1\|78491_78719_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054718.1\|WP_023197248.1\|79263_80433_+\|plasmid-partitioning-protein-SopA	unknown	unknown	gnl\|CDD\|107201

Protein	Function_ID	Function_description	E-value
NZ_CP054718.1\|WP_070799248.1\|70241_70838_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	2.27616e-66
NZ_CP054718.1\|WP_174896874.1\|75592_75847_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.34135e-11
NZ_CP054718.1\|WP_174896864.1\|74659_75232_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378838	pfam12323, HTH_OrfB_IS605, Helix-turn-helix domain. This is the N terminal helix-turn-helix domain of Transposase_2 pfam01385.	1.24891e-15
NZ_CP054718.1\|WP_174896865.1\|75407_75626_+\|transposase	gnl\|CDD\|366606	pfam01385, OrfB_IS605, Probable transposase. This family includes IS891, IS1136 and IS1341. DUF1225, pfam06774, has now been merged into this family.	2.18607e-12
NZ_CP054718.1\|WP_174896866.1\|77310_78525_-\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.24029e-57
NZ_CP054718.1\|WP_023197248.1\|79263_80433_+\|plasmid-partitioning-protein-SopA	gnl\|CDD\|107201	PHA02519, PHA02519, plasmid partition protein SopA; Reviewed.	0
NZ_CP054718.1\|WP_109909712.1\|78932_79046_-\|ash-family-protein	gnl\|CDD\|371132	pfam10554, Phage_ASH, Ash protein family. This family was identified by Iyer and colleagues. It includes the Ash protein from bacteriophage P4.	5.62225e-09
NZ_CP054718.1\|WP_000506738.1\|71137_71446_+\|hypothetical-protein	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	0.00813881
NZ_CP054718.1\|WP_174896867.1\|82943_84149_+\|hypothetical-protein	gnl\|CDD\|227618	COG5301, COG5301, Phage-related tail fibre protein [General function prediction only].	3.65684e-10
NZ_CP054718.1\|WP_109909712.1\|74138_74252_+\|ash-family-protein	gnl\|CDD\|371132	pfam10554, Phage_ASH, Ash protein family. This family was identified by Iyer and colleagues. It includes the Ash protein from bacteriophage P4.	5.62225e-09
NZ_CP054718.1\|WP_174896873.1\|84229_84685_+\|tail-fiber-assembly-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	8.11864e-34
NZ_CP054718.1\|WP_174896863.1\|71576_72758_-\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	6.9371e-146
NZ_CP054718.1\|WP_174896863.1\|80429_81611_+\|ParB/RepB/Spo0J-family-plasmid-partition-protein	gnl\|CDD\|184254	PRK13698, PRK13698, ParB/RepB/Spo0J family plasmid partition protein.	6.9371e-146
NZ_CP054718.1\|WP_000506738.1\|81741_82050_-\|hypothetical-protein	gnl\|CDD\|182350	PRK10276, PRK10276, translesion error-prone DNA polymerase V autoproteolytic subunit.	0.00813881

>NZ_CP054718.1|WP_174896874.1|75592_75847_+|transposase
MPNGASRKRGLNRSLASVSLGEFFRQLEYKCAWRGVALLKADRWEPSSKRCSSCGEINENLTLADRRWQCRCAAQNITVTLMPR
>NZ_CP054718.1|WP_174896865.1|75407_75626_+|transposase
MKQKRRVAQLHERISAVRRDFLHKLTHRLTCENQALAVEELNVRGMMAAPKPKPDADNPVRTCRTAPAASAG
>NZ_CP054718.1|WP_174896864.1|74659_75232_+|helix-turn-helix-domain-containing-protein
MGRPDPQGTPLMLYAVRVRLYPNAAQREFFARTFGCCRWVYNDALAYCQAMYEAGSSRPSAYDLMKRLPALKTEHPWLGEADSQALKQACADLDSAYRNFFRRVKNGETPGFPRFKSKHRGDATYTATAAASIALEPRQIKLPKAGWVRCRGVREWDGRIKRTTVRQTPTGKYYATVLIDNGGSYLRSRR
>NZ_CP054718.1|WP_023197246.1|74465_74693_+|hypothetical-protein
MNQVQLNEFGLAESLESALAQINALASVAQHTISSAGGSAYLNEAAQLLLTIKNLSADAERYRAEWEDLIPRVRR
>NZ_CP054718.1|WP_023197247.1|74304_74469_+|host-cell-division-inhibitor-Icd-like-protein
MYQFKFAAICRTDRKNHIHHLSTVADCERAARRQLSGKFILFFQARLPVAGGAV
>NZ_CP054718.1|WP_109909712.1|74138_74252_+|ash-family-protein
MPVSHTHRIMVAQAGQLSGWPVSFGTGIANPVWATTS
>NZ_CP054718.1|WP_174896863.1|71576_72758_-|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKRAPVMKNAPKINFDSAPTATITASDNKPTAPAVANLSERVRNMVGNHVTLPVCGRDVTFTLETVAAEMVERATMVWSGNERDQALLTQAALDDLIPSFLTSGQQNPAFGRKISGIIEVADGSRRRQTAIYTHSEYRVLVGDLDDEQMAWLSTIGNSYRQTSAYERGKRYARRLKNEFGDNVSKLAEAENISRKIIMRCIKTAELPREIIALFSNPNELSARAGESLAKVYAGNEDAVLAFAQHLAKRQKGGESFETDEILKQLHDVAEKPTKTATRERLFGKGIKAKYKGDSVSFQLNNVSPVVIQKIETLLKEYQEEQQKLVSEAVDDAFVEIDTVTNFIRAAAAGINYDIPANELQTMIPYSRTVLKEHINEADRIKRIADEITRRYII
>NZ_CP054718.1|WP_000506738.1|71137_71446_+|hypothetical-protein
MGFPSPASDYVEPRLTVDILCGINANSRIVNTSDGYAVVDVSLIQRQGDTVLIRSDGALRFAKIMGQALIIDDGEAIEGEALDGVVVIGKVTYFINRINFSD
>NZ_CP054718.1|WP_079820990.1|70895_71135_+|DNA-polymerase-V
MPRRYEVEIAWRKAIILEPSGRKTVTTGRFVQELEKVNHHWSLREANRWIEWHVTTFRDISTQEGENRTFQLFNPNGGL
>NZ_CP054718.1|WP_070799248.1|70241_70838_+|recombinase-family-protein
MQIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPGLKKLLRTLTAGDTLVVWKLDRLGRSMRHLVVLIEELRERGVNFRSLTDSIDTSTPMGRFFFHVMGALAEMERELIVERTRAGLEAARAQGRIGGRRPKLTPEQWAQAGRLIGAGVPRQKVAIIYDVGLSTLYKKFPVGKSVSYTGVEIESYLPS
>NZ_CP054718.1|WP_174896866.1|77310_78525_-|transposase
MGRPDPQGTPLMLYAVRVRLYPNAAQREFFARTFGCCRWVYNDALAYCQAMYEAGSSRPSAYDLMKRLPALKTEHPWLGEADSQALKQACADLDSAYRNFFRRVKNGETPGFPRFKSKHRGDATYTATAAASIALEPRQIKLPKAGWVRCRGVREWDGRIKRTTVRQTPTGKYYATVLIDNGRELPAQPTVNLNPLGIDVGCKTEGFTHQFAALSTGEIVTAPAEYKRQMKRLRRAQRRLARKQKGSASRMKQKRRVAQLHERISAVRRDFLHKLTHRLTCENQALAVEELNVRGMMAAPKPKPDADNPGAYLPNGASRKRGLNRSLASVSLGEFFRQLEYKCAWRGVALLKADRWEPSSKRCSSCGEINENLTLADRRWQCPVCGAEHHRDINAAVNIAARAV
>NZ_CP054718.1|WP_023197246.1|78491_78719_-|hypothetical-protein
MNQVQLNEFGLAESLESALAQINALASVAQHTISSAGGSAYLNEAAQLLLTIKNLSADAERYRAEWEDLIPRVRR
>NZ_CP054718.1|WP_023197247.1|78715_78880_-|host-cell-division-inhibitor-Icd-like-protein
MYQFKFAAICRTDRKNHIHHLSTVADCERAARRQLSGKFILFFQARLPVAGGAV
>NZ_CP054718.1|WP_109909712.1|78932_79046_-|ash-family-protein
MPVSHTHRIMVAQAGQLSGWPVSFGTGIANPVWATTS
>NZ_CP054718.1|WP_023197248.1|79263_80433_+|plasmid-partitioning-protein-SopA
MNLKERLDELIARGHTMTKMIAQAQFGDDSPEARTITRRWGITEAAELIGVTPQTIRNAEESGKLPPADTVVRGRVPQRAGYTIGQINDMRDHFGTRPSRPDGQSPAVLAIAAHKGGAFKTSTSVHMAQWAALQGLRVLLIDATDPQATASLYHGYVPDLHIHAEDTLLPYYLGERDNAEYAIKPTCWPNLDIIPSCLAIHRIESEIEVLEAAGKLPVPSHLLLRAAIESVWDSYDLIVIDSAPNLGIGTINVVCAADVIVVPTPAELYDYVSSLQFFTMLRDLIANVDLGGFEPDVRVLVTKYSSAVGNQSAWMDEQIRNAWGGMVLKEVVRLTDEVGKGQVRMRTVFEQAANQRSTPTAWRNAVAIWEPVCREIYERLIKTRWENNK
>NZ_CP054718.1|WP_174896863.1|80429_81611_+|ParB/RepB/Spo0J-family-plasmid-partition-protein
MKRAPVMKNAPKINFDSAPTATITASDNKPTAPAVANLSERVRNMVGNHVTLPVCGRDVTFTLETVAAEMVERATMVWSGNERDQALLTQAALDDLIPSFLTSGQQNPAFGRKISGIIEVADGSRRRQTAIYTHSEYRVLVGDLDDEQMAWLSTIGNSYRQTSAYERGKRYARRLKNEFGDNVSKLAEAENISRKIIMRCIKTAELPREIIALFSNPNELSARAGESLAKVYAGNEDAVLAFAQHLAKRQKGGESFETDEILKQLHDVAEKPTKTATRERLFGKGIKAKYKGDSVSFQLNNVSPVVIQKIETLLKEYQEEQQKLVSEAVDDAFVEIDTVTNFIRAAAAGINYDIPANELQTMIPYSRTVLKEHINEADRIKRIADEITRRYII
>NZ_CP054718.1|WP_000506738.1|81741_82050_-|hypothetical-protein
MGFPSPASDYVEPRLTVDILCGINANSRIVNTSDGYAVVDVSLIQRQGDTVLIRSDGALRFAKIMGQALIIDDGEAIEGEALDGVVVIGKVTYFINRINFSD
>NZ_CP054718.1|WP_079820990.1|82052_82292_-|DNA-polymerase-V
MPRRYEVEIAWRKAIILEPSGRKTVTTGRFVQELEKVNHHWSLREANRWIEWHVTTFRDISTQEGENRTFQLFNPNGGL
>NZ_CP054718.1|WP_174896867.1|82943_84149_+|hypothetical-protein
MISTPQKAEIMPSTLYFCIFRNVGLRETINRAADALQKSQNGADIPDKGLFAQNISAAVAFSGGIHIGGDSGSWTTAEFITWLESQGAFNHPYWMCKGSWAYASNKVITDTGCGIICLAGAVVEVMGTGGAITIRVTTPTTTSGGGVPSAQFIYINHGDGYAPGWRREFSRTGDGMTGNLYLKNEGRINLAIVDEAETPRMWLFKDKGGDGVHINNGNDGGGDFIFGKDGGFYASAVRAGIGRKLAVTSDNNSALSARFNLCGGGDRPTVIELDDDQGWHLYSQRNPDGSIRFMVNGEIFTTGSIHAGANTISTDGNIYGSLWGGWLNDWINNTIINRFVKDIRLGGIEYAQAWNGPGFNDTPGYVITGVTNGNSDELIDGVHRRPLQKLIGGIWYNVTSI
>NZ_CP054718.1|WP_174896873.1|84229_84685_+|tail-fiber-assembly-protein
MWLYSEDEKNWYEEQKNFAADTLKIAYDQNGVILNISKDVSTINPTGLSVVELPDITANRRADIYGGWMFDGKQVIKRIYTPEELRQQAEVKKVKLLEEAENVITPLARAVKLKIATDEEIKQLEAWELYSVMVNRVDTSNPDWPEKPASQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP054718_2	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	NZ_CP054718.1	76102-76127	0	1.0

1. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to position: 76102-76127, mismatch: 0, identity: 1.0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP054718_1	1.1\|76044\|30\|NZ_CP054718\|CRISPRCasFinder	76044-76073	30	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	76044-76073	1.0
NZ_CP054718_1	1.1\|76044\|30\|NZ_CP054718\|CRISPRCasFinder	76044-76073	30	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	77107-77136	1.0
NZ_CP054718_2	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	76102-76127	1.0
NZ_CP054718_2	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	77052-77077	1.0
NZ_CP054718_2	2.2\|77122\|30\|NZ_CP054718\|PILER-CR	77122-77151	30	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	76044-76073	1.0
NZ_CP054718_2	2.2\|77122\|30\|NZ_CP054718\|PILER-CR	77122-77151	30	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	77107-77136	1.0

1. spacer 1.1|76044|30|NZ_CP054718|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

caagaaagttctaggaagctggctgaagcg	CRISPR spacer
caagaaagttctaggaagctggctgaagcg	Protospacer
******************************

2. spacer 1.1|76044|30|NZ_CP054718|CRISPRCasFinder matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

caagaaagttctaggaagctggctgaagcg	CRISPR spacer
caagaaagttctaggaagctggctgaagcg	Protospacer
******************************

3. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

4. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

5. spacer 2.2|77122|30|NZ_CP054718|PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgcttcagccagcttcctagaactttcttg	CRISPR spacer
cgcttcagccagcttcctagaactttcttg	Protospacer
******************************

6. spacer 2.2|77122|30|NZ_CP054718|PILER-CR matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

cgcttcagccagcttcctagaactttcttg	CRISPR spacer
cgcttcagccagcttcctagaactttcttg	Protospacer
******************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2602 : 55101

Klebsiella_phage(52.46%)

terminase,head,tail,portal,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174896837.1\|2602_3037_-\|terminase	P27 family phage terminase small subunit	Q6UAY1	Klebsiella_phage	1.3e-66	86.8
WP_070799287.1\|3669_4722_-	DNA cytosine methyltransferase	O64366	Escherichia_phage	4.5e-134	66.3
WP_174896838.1\|4801_5110_-	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	1.9e-45	87.8
WP_069720971.1\|5106_5373_-	hypothetical protein	A0A0M3LQ80	Mannheimia_phage	2.3e-10	41.2
WP_061379842.1\|5483_5696_-	hypothetical protein	Q6UAS6	Klebsiella_phage	6.2e-19	82.5
WP_023197217.1\|6105_6597_-	hypothetical protein	Q6UAS8	Klebsiella_phage	2.2e-83	92.0
WP_023197218.1\|6593_6902_-	hypothetical protein	Q6UAS9	Klebsiella_phage	8.4e-41	84.0
WP_023197222.1\|8946_9258_+	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	7.9e-39	80.4
WP_023197223.1\|9254_9536_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	7.2e-31	66.7
WP_023197224.1\|9561_9810_-	hypothetical protein	Q7Y3V8	Yersinia_phage	5.0e-12	46.7
WP_174896839.1\|10200_10791_-	hypothetical protein	Q7Y3W0	Yersinia_phage	5.7e-78	68.3
WP_174896840.1\|10747_11014_-	hypothetical protein	O64355	Escherichia_phage	4.3e-09	45.7
WP_174896835.1\|12130_12592_-	hypothetical protein	G9L6G6	Escherichia_phage	9.7e-17	52.4
WP_174896841.1\|12554_13148_-	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	1.1e-36	54.5
WP_174896842.1\|13349_13778_-	hypothetical protein	Q7Y3W9	Yersinia_phage	1.5e-27	50.0
WP_174896843.1\|13774_14224_-	hypothetical protein	Q7Y3W9	Yersinia_phage	3.1e-20	44.9
WP_174896844.1\|14288_14504_-	hypothetical protein	NA	NA	NA	NA
WP_174896872.1\|14848_15328_-	hypothetical protein	A0A2I6TCB3	Escherichia_phage	4.4e-20	36.8
WP_174896845.1\|15451_15784_-	hypothetical protein	Q7Y3X3	Yersinia_phage	1.4e-25	59.8
WP_031621397.1\|16377_17022_+	XRE family transcriptional regulator	Q7Y3X6	Yersinia_phage	4.9e-67	61.7
WP_174896846.1\|22075_22228_+	DUF5448 family protein	Q6UAU9	Klebsiella_phage	4.3e-06	67.6
WP_174896847.1\|22190_22517_+	DUF5448 family protein	Q6UAU9	Klebsiella_phage	8.1e-26	70.5
WP_174896848.1\|24728_26585_+	protelomerase	Q6UAV6	Klebsiella_phage	1.3e-189	55.0
WP_174896849.1\|26660_27050_-	DUF5448 family protein	Q6UAU9	Klebsiella_phage	8.7e-43	71.3
WP_080087190.1\|27537_27864_-	hypothetical protein	O64345	Escherichia_phage	9.8e-40	69.2
WP_174896850.1\|27874_31849_-	hypothetical protein	Q7Y3X9	Yersinia_phage	0.0e+00	70.3
WP_031621397.1\|32114_32759_-	XRE family transcriptional regulator	Q7Y3X6	Yersinia_phage	4.9e-67	61.7
WP_024148375.1\|32861_33068_+	Cro/Cl family transcriptional regulator	Q7Y3X4	Yersinia_phage	1.2e-14	55.9
WP_024145689.1\|33087_33690_+	hypothetical protein	Q7Y3X3	Yersinia_phage	2.7e-67	64.5
WP_069040855.1\|33676_34342_+	hypothetical protein	Q7Y3X2	Yersinia_phage	1.3e-41	40.5
WP_137948900.1\|34640_34859_+	hypothetical protein	NA	NA	NA	NA
WP_069721606.1\|34862_35801_+	recombination-associated protein RdgC	Q7Y3W9	Yersinia_phage	5.3e-70	46.5
WP_174896851.1\|35800_36001_+	hypothetical protein	Q7Y3W8	Yersinia_phage	1.4e-12	56.1
WP_174896852.1\|36003_36933_+	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	7.9e-66	62.5
WP_174896853.1\|36929_37412_+	ead/Ea22-like family protein	Q8HAA6	Salmonella_phage	1.5e-31	44.2
WP_070799302.1\|38375_38999_+	hypothetical protein	Q7Y3W0	Yersinia_phage	4.9e-80	64.4
WP_023197225.1\|39086_39323_+	DinI-like family protein	Q7Y3V9	Yersinia_phage	4.1e-19	55.8
WP_023197224.1\|39360_39609_+	hypothetical protein	Q7Y3V8	Yersinia_phage	5.0e-12	46.7
WP_023197223.1\|39634_39916_-	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	7.2e-31	66.7
WP_023197222.1\|39912_40224_-	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	7.9e-39	80.4
WP_023197221.1\|40394_40616_+	hypothetical protein	NA	NA	NA	NA
WP_023197220.1\|40665_40899_+	hypothetical protein	O64359	Escherichia_phage	3.0e-14	51.4
WP_174896854.1\|41159_42221_+	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.8e-162	87.3
WP_023197218.1\|42278_42587_+	hypothetical protein	Q6UAS9	Klebsiella_phage	8.4e-41	84.0
WP_023197217.1\|42583_43075_+	hypothetical protein	Q6UAS8	Klebsiella_phage	2.2e-83	92.0
WP_070799294.1\|43091_43556_+	hypothetical protein	Q6UAS7	Klebsiella_phage	2.1e-64	84.4
WP_128189420.1\|43503_43698_+	hypothetical protein	Q6UAS6	Klebsiella_phage	5.7e-19	82.5
WP_069720971.1\|43808_44075_+	hypothetical protein	A0A0M3LQ80	Mannheimia_phage	2.3e-10	41.2
WP_174896838.1\|44071_44380_+	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	1.9e-45	87.8
WP_070799287.1\|44459_45512_+	DNA cytosine methyltransferase	O64366	Escherichia_phage	4.5e-134	66.3
WP_023197212.1\|45565_45928_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	8.1e-59	89.8
WP_023197211.1\|46147_46582_+\|terminase	P27 family phage terminase small subunit	Q6UAY1	Klebsiella_phage	2.5e-67	87.5
WP_079975380.1\|46617_48327_+\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	2.3e-305	88.0
WP_024145686.1\|48320_48500_+	hypothetical protein	Q6UAX9	Klebsiella_phage	4.3e-13	63.2
WP_070799274.1\|48499_49759_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.3e-222	90.5
WP_069040874.1\|49791_50142_+	hypothetical protein	NA	NA	NA	NA
WP_174896855.1\|50125_51043_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	5.8e-130	78.2
WP_174896856.1\|51116_52403_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.4e-208	87.9
WP_023197205.1\|52458_52749_+	hypothetical protein	Q6UAX5	Klebsiella_phage	2.6e-20	61.4
WP_174896857.1\|52729_53053_+\|head,tail	phage gp6-like head-tail connector protein	Q7Y407	Yersinia_phage	3.4e-32	64.2
WP_023228903.1\|53049_53394_+	hypothetical protein	Q6UAX3	Klebsiella_phage	1.8e-36	63.6
WP_079975377.1\|53374_53764_+	hypothetical protein	Q6UAX2	Klebsiella_phage	9.0e-48	72.2
WP_069720979.1\|53760_54162_+	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	7.6e-58	88.0
WP_174896858.1\|54194_54668_+\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	2.4e-63	78.7
WP_023197199.1\|54738_55101_+	hypothetical protein	Q6UAW8	Klebsiella_phage	1.9e-28	55.1

DBSCAN-SWA_2

67972 : 91341

Yersinia_phage(23.81%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174896873.1\|67972_68428_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	5.0e-58	73.7
WP_174896862.1\|68431_68950_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	4.3e-45	52.0
WP_174896836.1\|69595_70012_-	hypothetical protein	A0A192Y7M1	Salmonella_phage	1.7e-60	83.8
WP_070799248.1\|70241_70838_+	recombinase family protein	A0A1S6L009	Salmonella_phage	1.2e-88	87.5
WP_079820990.1\|70895_71135_+	DNA polymerase V	I6PD82	Cronobacter_phage	1.7e-20	55.7
WP_000506738.1\|71137_71446_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.0e-26	57.1
WP_174896863.1\|71576_72758_-	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	7.8e-127	60.4
WP_109909712.1\|74138_74252_+	ash family protein	NA	NA	NA	NA
WP_023197247.1\|74304_74469_+	host cell division inhibitor Icd-like protein	Q7Y3Y4	Yersinia_phage	1.1e-18	83.0
WP_023197246.1\|74465_74693_+	hypothetical protein	NA	NA	NA	NA
WP_174896864.1\|74659_75232_+	helix-turn-helix domain-containing protein	A0A1I9KF42	Aeromonas_phage	2.8e-53	58.5
WP_174896865.1\|75407_75626_+\|transposase	transposase	A0A1I9KF42	Aeromonas_phage	1.1e-13	70.4
WP_174896874.1\|75592_75847_+\|transposase	transposase	A0A1I9KF42	Aeromonas_phage	5.3e-17	58.4
WP_174896866.1\|77310_78525_-\|transposase	transposase	A0A1I9KF42	Aeromonas_phage	1.6e-119	55.7
WP_023197246.1\|78491_78719_-	hypothetical protein	NA	NA	NA	NA
WP_023197247.1\|78715_78880_-	host cell division inhibitor Icd-like protein	Q7Y3Y4	Yersinia_phage	1.1e-18	83.0
WP_109909712.1\|78932_79046_-	ash family protein	NA	NA	NA	NA
WP_023197248.1\|79263_80433_+	plasmid-partitioning protein SopA	Q7Y3Y6	Yersinia_phage	4.0e-192	84.1
WP_174896863.1\|80429_81611_+	ParB/RepB/Spo0J family plasmid partition protein	Q7Y3Y7	Yersinia_phage	7.8e-127	60.4
WP_000506738.1\|81741_82050_-	hypothetical protein	K7PGV5	Enterobacterial_phage	2.0e-26	57.1
WP_079820990.1\|82052_82292_-	DNA polymerase V	I6PD82	Cronobacter_phage	1.7e-20	55.7
WP_174896867.1\|82943_84149_+	hypothetical protein	Q6K1H2	Salmonella_virus	3.3e-88	48.8
WP_174896873.1\|84229_84685_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	5.0e-58	73.7
WP_174896862.1\|84688_85207_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	4.3e-45	52.0
WP_174896868.1\|87945_91341_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	70.1

DBSCAN-SWA_3

98091 : 102075

Klebsiella_phage(85.71%)

head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023197199.1\|98091_98454_-	hypothetical protein	Q6UAW8	Klebsiella_phage	1.9e-28	55.1
WP_174896858.1\|98524_98998_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	2.4e-63	78.7
WP_069720979.1\|99030_99432_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	7.6e-58	88.0
WP_079975377.1\|99428_99818_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.0e-48	72.2
WP_023228903.1\|99798_100143_-	hypothetical protein	Q6UAX3	Klebsiella_phage	1.8e-36	63.6
WP_174896857.1\|100139_100463_-\|head,tail	phage gp6-like head-tail connector protein	Q7Y407	Yersinia_phage	3.4e-32	64.2
WP_174896856.1\|100788_102075_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.4e-208	87.9

DBSCAN-SWA_4

106589 : 113783

Klebsiella_phage(62.5%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174896875.1\|106589_106853_-\|terminase	P27 family phage terminase small subunit	Q6UAY1	Klebsiella_phage	1.1e-36	87.4
WP_174896869.1\|108780_109065_-	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	2.9e-40	86.7
WP_069720971.1\|109084_109351_-	hypothetical protein	A0A0M3LQ80	Mannheimia_phage	2.3e-10	41.2
WP_061379842.1\|109460_109673_-	hypothetical protein	Q6UAS6	Klebsiella_phage	6.2e-19	82.5
WP_023197217.1\|110082_110574_-	hypothetical protein	Q6UAS8	Klebsiella_phage	2.2e-83	92.0
WP_023197218.1\|110570_110879_-	hypothetical protein	Q6UAS9	Klebsiella_phage	8.4e-41	84.0
WP_023197221.1\|112529_112751_-	hypothetical protein	NA	NA	NA	NA
WP_023197223.1\|113227_113509_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	7.2e-31	66.7
WP_023197224.1\|113534_113783_-	hypothetical protein	Q7Y3V8	Yersinia_phage	5.0e-12	46.7

Anti-CRISPR protein detection

Acr_ID: NZ_CP054718.1|WP_174896836.1|69595_70012_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP054718.1|WP_023197247.1|74304_74469_+|host-cell-division-inhibitor-Icd-like-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP054718.1|WP_023197246.1|74465_74693_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP054718.1|WP_023197246.1|78491_78719_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP054718.1|WP_023197247.1|78715_78880_-|host-cell-division-inhibitor-Icd-like-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP054718.1|WP_174896836.1|69595_70012_-|hypothetical-protein

69595_70012_-

138 aa aa

67972-91341

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP054718_2	TypeV	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	76127-76102	0

1. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to NZ_CP054718 position: 76127-76102, mismatch: 0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

NZ_CP054718.1|WP_023197247.1|74304_74469_+|host-cell-division-inhibitor-Icd-like-protein

74304_74469_+

54 aa aa

67972-91341

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP054718_2	TypeV	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	76127-76102	0

1. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to NZ_CP054718 position: 76127-76102, mismatch: 0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

NZ_CP054718.1|WP_023197246.1|74465_74693_+|hypothetical-protein

74465_74693_+

75 aa aa

67972-91341

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP054718_2	TypeV	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	76127-76102	0

1. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to NZ_CP054718 position: 76127-76102, mismatch: 0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

NZ_CP054718.1|WP_023197246.1|78491_78719_-|hypothetical-protein

78491_78719_-

75 aa aa

67972-91341

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP054718_2	TypeV	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	76127-76102	0

1. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to NZ_CP054718 position: 76127-76102, mismatch: 0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

NZ_CP054718.1|WP_023197247.1|78715_78880_-|host-cell-division-inhibitor-Icd-like-protein

78715_78880_-

54 aa aa

67972-91341

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP054718_2	TypeV	2.1\|77061\|26\|NZ_CP054718\|PILER-CR	77061-77086	26	76127-76102	0

1. spacer 2.1|77061|26|NZ_CP054718|PILER-CR matches to NZ_CP054718 position: 76127-76102, mismatch: 0

cggtcgaacatccacagcaaattgac	CRISPR spacer
cggtcgaacatccacagcaaattgac	Protospacer
**************************

2. NZ_CP054715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054715_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054715_1

1817453-1817553

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054715_1

>merge|NZ_CP054715|1|1817453-1817553|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP054715|1|1|1817453-1817553|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054715.1\|WP_000928382.1\|1823396_1823714_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP054715.1\|WP_077905270.1\|1820289_1821186_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP054715.1\|WP_000802092.1\|1814660_1815545_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP054715.1\|WP_174895493.1\|1824823_1825459_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP054715.1\|WP_174895488.1\|1803640_1804984_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP054715.1\|WP_079803414.1\|1812415_1814551_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP054715.1\|WP_174895491.1\|1819099_1820107_-\|luciferase-like-monooxygenase	unknown	unknown	gnl\|CDD\|182505
NZ_CP054715.1\|WP_079819821.1\|1822388_1822913_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP054715.1\|WP_174895489.1\|1807621_1810303_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP054715.1\|WP_000089666.1\|1810811_1811756_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP054715.1\|WP_174895490.1\|1817764_1819009_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP054715.1\|WP_079824088.1\|1824174_1824693_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_CP054715.1\|WP_000380410.1\|1823751_1824195_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP054715.1\|WP_000105461.1\|1805614_1806067_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP054715.1\|WP_000908562.1\|1822906_1823410_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP054715.1\|WP_001031040.1\|1806094_1807597_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP054715.1\|WP_001040201.1\|1810410_1810812_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP054715.1\|WP_010723222.1\|1815650_1815731_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP054715.1\|WP_174895492.1\|1821176_1822172_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP054715.1\|WP_000059465.1\|1811906_1812176_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170

Protein	Function_ID	Function_description	E-value
NZ_CP054715.1\|WP_000928382.1\|1823396_1823714_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	5.54437e-44
NZ_CP054715.1\|WP_077905270.1\|1820289_1821186_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP054715.1\|WP_000802092.1\|1814660_1815545_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP054715.1\|WP_174895493.1\|1824823_1825459_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.50508e-69
NZ_CP054715.1\|WP_174895488.1\|1803640_1804984_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP054715.1\|WP_079803414.1\|1812415_1814551_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP054715.1\|WP_174895491.1\|1819099_1820107_-\|luciferase-like-monooxygenase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP054715.1\|WP_079819821.1\|1822388_1822913_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	5.42899e-83
NZ_CP054715.1\|WP_174895489.1\|1807621_1810303_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP054715.1\|WP_000089666.1\|1810811_1811756_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP054715.1\|WP_174895490.1\|1817764_1819009_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP054715.1\|WP_079824088.1\|1824174_1824693_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	5.63882e-86
NZ_CP054715.1\|WP_000380410.1\|1823751_1824195_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	4.65614e-100
NZ_CP054715.1\|WP_000105461.1\|1805614_1806067_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_CP054715.1\|WP_000908562.1\|1822906_1823410_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP054715.1\|WP_001031040.1\|1806094_1807597_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP054715.1\|WP_001040201.1\|1810410_1810812_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	5.93119e-53
NZ_CP054715.1\|WP_010723222.1\|1815650_1815731_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP054715.1\|WP_174895492.1\|1821176_1822172_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.45746e-116
NZ_CP054715.1\|WP_000059465.1\|1811906_1812176_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54

>NZ_CP054715.1|WP_010723222.1|1815650_1815731_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP054715.1|WP_000802092.1|1814660_1815545_+|lipoprotein-NlpI
MKPFLRWCLVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP054715.1|WP_079803414.1|1812415_1814551_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIDQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQTQPAAAPEAPASEQGE
>NZ_CP054715.1|WP_000059465.1|1811906_1812176_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP054715.1|WP_000089666.1|1810811_1811756_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDALQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLTVSKYPVERMVTLEHLQTLVAQAEQQGLPAAQWLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDGKFIGMGEIDDEGRVAPRRLVVECPA
>NZ_CP054715.1|WP_001040201.1|1810410_1810812_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP054715.1|WP_174895489.1|1807621_1810303_+|translation-initiation-factor-IF-2
MTDVTVKALAAERLVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREASSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPAKKGNKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP054715.1|WP_001031040.1|1806094_1807597_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAETHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP054715.1|WP_000105461.1|1805614_1806067_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP054715.1|WP_174895488.1|1803640_1804984_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTASDNLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLYGYAQSGLLATSSATGLPQVGSLEKKAK
>NZ_CP054715.1|WP_174895490.1|1817764_1819009_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNIVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESHVSYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFAPPIVGGLLWPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGTPMIVLILVFGVGNAVIHILSSFNLLPVYQ
>NZ_CP054715.1|WP_174895491.1|1819099_1820107_-|luciferase-like-monooxygenase
MTNNSVPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPSPLVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMLQAFVKLRRGETGQLPPPIENMDTFWSPSEQYGVRQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKQELLG
>NZ_CP054715.1|WP_077905270.1|1820289_1821186_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVFSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP054715.1|WP_174895492.1|1821176_1822172_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFAVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP054715.1|WP_079819821.1|1822388_1822913_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQLADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP054715.1|WP_000908562.1|1822906_1823410_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP054715.1|WP_000928382.1|1823396_1823714_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRVEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP054715.1|WP_000380410.1|1823751_1824195_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTEDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDVARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA
>NZ_CP054715.1|WP_079824088.1|1824174_1824693_-|type-1-glutamine-amidotransferase
MSKKIAVLITDEFEDSEFTSPATEFRQAGHEVITIEKEAGKTVKGKKGEASVTIDKAIDDVRPDDFDALLLPGGHSPDNLRGDSRFVDFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP054715.1|WP_174895493.1|1824823_1825459_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVSDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTARRLGAQHMLVVSSMGANAHSPFFYHRVKGEMEEALIAQKWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIEARDVARAMLAEALAPAQEGVTILTSSQLREKAE

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Crispr_ID: NZ_CP054715_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054715_2

2216278-2216550

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATA	CRISPRCasFinder
GTGTTCCCCGCGNCAGCGGGGATAAACCG	CRT

4 spacers

The CRISPR arrays of NZ_CP054715_2

>merge|NZ_CP054715|2|2216278-2216550|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCAACATGCGGCAAATAGCAGAACTCAGCTGTGTTCCCCGCGTCAGCGGGGATAAACCGAGGAGCCGACGGGTGATGACGACGACCAGCCAGTGTTCCCCGTGCCAGCGGGGATAAACCGATGGCGTGGGTGATGATCCGACTGTATGCCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATCAGTCCATCAGTAGAGGCGGTTGCCGCGTGTTCCCCGCGTCAGCGGGGATAGCCGT

>NZ_CP054715|2|1|2216278-2216489|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCAACATGCGGCAAATAGCAGAACTCAGCT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	AGGAGCCGACGGGTGATGACGACGACCAGCCA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	ATGGCGTGGGTGATGATCCGACTGTATGCCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP054715|2|2|2216278-2216545|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATA	AACCGGCTCAACATGCGGCAAATAGCAGAACTCAGCT
GTGTTCCCCGCGTCAGCGGGGATA	AACCGAGGAGCCGACGGGTGATGACGACGACCAGCCA
GTGTTCCCCGTGCCAGCGGGGATA	AACCGATGGCGTGGGTGATGATCCGACTGTATGCCCA
GTGTTCCCCGCGCCAGCGGGGATA	AACCGAAAATCAGTCCATCAGTAGAGGCGGTTGCCGC
GTGTTCCCCGCGTCAGCGGGGATA

>NZ_CP054715|2|1|2216278-2216550|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCAACATGCGGCAAATAGCAGAACTCAGCT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	AGGAGCCGACGGGTGATGACGACGACCAGCCA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	ATGGCGTGGGTGATGATCCGACTGTATGCCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATCAGTCCATCAGTAGAGGCGGTTGCCGC
GTGTTCCCCGCGTCAGCGGGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054715.1\|WP_174895644.1\|2221928_2222663_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP054715.1\|WP_171775556.1\|2208827_2211062_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP054715.1\|WP_174895637.1\|2203152_2203935_+\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NZ_CP054715.1\|WP_174895642.1\|2218332_2220132_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP054715.1\|WP_001199956.1\|2215309_2215981_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP054715.1\|WP_174895648.1\|2227026_2228466_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP054715.1\|WP_174895646.1\|2224810_2225857_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP054715.1\|WP_174895640.1\|2207480_2208776_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP054715.1\|WP_000036734.1\|2213875_2215174_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP054715.1\|WP_174895645.1\|2222750_2223704_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP054715.1\|WP_174895641.1\|2212155_2213793_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP054715.1\|WP_174895638.1\|2203953_2204403_+\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP054715.1\|WP_174895643.1\|2220131_2221844_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP054715.1\|WP_174895639.1\|2204666_2207423_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP054715.1\|WP_174895636.1\|2202823_2203153_+\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|225640
NZ_CP054715.1\|WP_001207997.1\|2216647_2217445_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP054715.1\|WP_000108313.1\|2217534_2217897_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP054715.1\|WP_174895647.1\|2226108_2227017_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP054715.1\|WP_053509154.1\|2211136_2211928_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP054715.1\|WP_174896671.1\|2224086_2224572_-\|CRISPR-associated-protein-Cas3	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054715.1\|WP_174895644.1\|2221928_2222663_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.3866e-139
NZ_CP054715.1\|WP_171775556.1\|2208827_2211062_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP054715.1\|WP_174895637.1\|2203152_2203935_+\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	0
NZ_CP054715.1\|WP_174895642.1\|2218332_2220132_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP054715.1\|WP_001199956.1\|2215309_2215981_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP054715.1\|WP_174895648.1\|2227026_2228466_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP054715.1\|WP_174895646.1\|2224810_2225857_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP054715.1\|WP_174895640.1\|2207480_2208776_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP054715.1\|WP_000036734.1\|2213875_2215174_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP054715.1\|WP_174895645.1\|2222750_2223704_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP054715.1\|WP_174895641.1\|2212155_2213793_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP054715.1\|WP_174895638.1\|2203953_2204403_+\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	5.77565e-103
NZ_CP054715.1\|WP_174895643.1\|2220131_2221844_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP054715.1\|WP_174895639.1\|2204666_2207423_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP054715.1\|WP_174895636.1\|2202823_2203153_+\|YqcC-family-protein	gnl\|CDD\|225640	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown].	3.23484e-52
NZ_CP054715.1\|WP_001207997.1\|2216647_2217445_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	7.9973e-103
NZ_CP054715.1\|WP_000108313.1\|2217534_2217897_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP054715.1\|WP_174895647.1\|2226108_2227017_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP054715.1\|WP_053509154.1\|2211136_2211928_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.62077e-158

>NZ_CP054715.1|WP_001199956.1|2215309_2215981_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP054715.1|WP_000036734.1|2213875_2215174_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP054715.1|WP_174895641.1|2212155_2213793_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAQTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP054715.1|WP_053509154.1|2211136_2211928_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLNIMQRLRDPEGGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGLFDFNDICAAISDKLERRHPHVFGELSANNSEDVLVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLIFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP054715.1|WP_171775556.1|2208827_2211062_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGN
>NZ_CP054715.1|WP_174895640.1|2207480_2208776_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDPFGQGVARHNGKALFIPGLLPEESAEVILTEDKKQFARARVLRRLNDSPERETPRCPHFGVCGGCQQQHAGIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNSPPDKPLQMGFRKAGSSDIVNVEQCPVLVPQLEALLPRIRACLASLHGARHLGHVELVQAGNGTLMILRHTAPLSAADREKLERFSHSEGLSLFLAPFSEILETTIGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP054715.1|WP_174895639.1|2204666_2207423_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPVGAPFPRRLSVDRHGDIMILRTPIISESYSPDESVIADAKNTQNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP054715.1|WP_174895638.1|2203953_2204403_+|flavodoxin
MAEIGIFVGTMYGNSLLVAEEAEAILARQGHSATVFEDPELSDWQQYQDKVALVVTSTTGQGDLPDSIAPLFHSIKDTLGFQPNLRYGVIALGDSSYPNFCNGGKQFDALLQEQSAQRMGEMLLIDASEYPEPESQSNPWVENWGTLLS
>NZ_CP054715.1|WP_174895637.1|2203152_2203935_+|tRNA-pseudouridine(65)-synthase-TruC
MLEILYQDPWLVAVNKPAGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRSLAQQFEQHHIRKRYHAIVRGWLMDDAVLDYPLVEERDKIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSAAEHFACRRLMLHASRLELTHPFTGQPLMIQAGLDETWMRALTQFGWRGLLPDNERVEFTAASRQDETHQA
>NZ_CP054715.1|WP_174895636.1|2202823_2203153_+|YqcC-family-protein
MTTHDRVRQQLHALETLLREHRHWRLDAPQAHLFTSTQPFFMDTMEPLEWLQWVLIPRMHTLLDNTQPLPEAFAVAPYYEMALAADHPQREAILAVLQDLDALFVRDKS
>NZ_CP054715.1|WP_001207997.1|2216647_2217445_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP054715.1|WP_000108313.1|2217534_2217897_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP054715.1|WP_174895642.1|2218332_2220132_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPPSALFPLNPEQLARLQAATTDLTPAQLAWVSGYFWGVLNHQPGANATVPAPAVEMPGITLISASQTGNARRVAETLRDDLIAAKLNVTLINAGDYKFKQIANEKLLVVVASTQGEGEPAEEAVALHKFLLSKKAPKLDNTAFAVFGLGDTSYEFFCQAGKDFDSRLAELGGERLLDRVDADVEYQAAAAEWRARLVEVLKARAPAAPSVQAAASGAVNDVHSSPYTKEAPLTATLAVNQKITGRESEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKSLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQQYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLHEQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP054715.1|WP_174895643.1|2220131_2221844_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVECRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP054715.1|WP_174895644.1|2221928_2222663_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRVLALAEINAQLEKLSAEERVAWALKNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP054715.1|WP_174895645.1|2222750_2223704_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNINDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDLLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP054715.1|WP_174896671.1|2224086_2224572_-|CRISPR-associated-protein-Cas3
MPDNARALVDGVYEQKIAASAGLQTISDVAFGKVLSQRSVAAQNLLRYDLGYDREASDFLWDKDREFSTRLGEESVDVYLARKDIDGQLRPLVDEIDFCWEKSRLSVRKSWWQKNSGTFQCPDEETLTCFRKRHHRPSGHIVLVSDAGEASYYSKRFGLVG
>NZ_CP054715.1|WP_174895646.1|2224810_2225857_-|aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTRMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKNISTHYGIRFIATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIAHHHGIAASTNPGLNPAYPEGTGCCNDAEVFDKAGMSVLSVEATNWSLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQYIDKALPGRIERRSRDIVRIMLPLVKELAKAEKTS
>NZ_CP054715.1|WP_174895647.1|2226108_2227017_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIHIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESRAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP054715.1|WP_174895648.1|2227026_2228466_+|sulfate-adenylyltransferase-subunit-CysN
MNTTLAQQIAHEGGVEAWMTAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKYLVVAINKMDLVDYSEETFARIREDYLTFAEKLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVEIQRSVDTQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGQRVKVLPSGVESSVARIVTFDGDREEAYAGEAITLVLNDEIDISRGDLLLVANEALAPTQHAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIETIRYQIDINNLTQRDVESLPLNGIGLVDMIFDEPIALDVYQQNPVTGGLIFIDRLSNVTVGAGMVRESVEHGAMPPVEYGAFERELNALIRRHFPHWDARDLPGDKYGAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054715_2	2.1\|2216307\|32\|NZ_CP054715\|PILER-CR,CRT	2216307-2216338	32	NZ_CP015255	Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence	1084-1115	8	0.75

1. spacer 2.1|2216307|32|NZ_CP054715|PILER-CR,CRT matches to NZ_CP015255 (Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence) position: , mismatch: 8, identity: 0.75

gctcaacatgcggcaaatagcagaactcagct	CRISPR spacer
tttctgcatgcggcaaattgcataactcattt	Protospacer
 .** .************ *** ****** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

449331 : 468560

Escherichia_phage(33.33%)

portal,protease,terminase,integrase,holin

attL 456912:456925|attR 472418:472431

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174895024.1\|449331_449706_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.8e-14	38.2
WP_174895025.1\|450351_451887_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	8.2e-177	63.1
WP_000196423.1\|451883_452090_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-07	48.6
WP_174895026.1\|452086_454195_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	8.0e-292	70.4
WP_000348549.1\|454181_454673_-	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	4.5e-44	57.5
WP_126487362.1\|455066_455603_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_174895027.1\|455599_456217_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	9.1e-95	82.3
WP_001527046.1\|456219_456564_-\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
456912:456925	attL	NA	NA	NA	NA
WP_174896633.1\|457230_458064_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_174895028.1\|458354_459191_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	2.6e-124	83.3
WP_174895029.1\|459187_460048_-	helix-turn-helix domain-containing protein	A0A1B5FPA6	Escherichia_phage	1.9e-135	83.9
WP_000105297.1\|461843_462500_+	helix-turn-helix domain-containing protein	Q8W648	Enterobacteria_phage	8.2e-94	74.8
WP_115267537.1\|462639_462837_+	hypothetical protein	NA	NA	NA	NA
WP_085336127.1\|462839_463031_+	hypothetical protein	NA	NA	NA	NA
WP_000129880.1\|463104_463299_+	hypothetical protein	NA	NA	NA	NA
WP_000155900.1\|463295_463481_+	hypothetical protein	NA	NA	NA	NA
WP_079832474.1\|463668_463878_+	hypothetical protein	NA	NA	NA	NA
WP_174895030.1\|463801_464218_+	hypothetical protein	A0A1B5FPB3	Escherichia_phage	1.4e-27	55.7
WP_174894859.1\|464217_464418_+	hypothetical protein	A0A1B5FPB7	Escherichia_phage	1.6e-13	69.8
WP_174895031.1\|464448_465354_+	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	8.3e-129	77.6
WP_174895032.1\|465350_465917_+	hypothetical protein	A0A088C4R7	Shewanella_sp._phage	7.5e-27	38.3
WP_079918440.1\|465913_466138_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	4.3e-18	64.8
WP_174895033.1\|466134_466347_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	9.9e-25	77.1
WP_174895034.1\|466343_466805_+	ATPase	A0A1B5FPC7	Escherichia_phage	3.0e-42	52.2
WP_174895035.1\|467354_468560_-\|integrase	tyrosine-type recombinase/integrase	A5LH57	Enterobacteria_phage	8.3e-209	84.5
472418:472431	attR	NA	NA	NA	NA

DBSCAN-SWA_2

985320 : 1036995

Cronobacter_phage(64.71%)

protease,plate,head,capsid,integrase,tail

attL 1015945:1015961|attR 1033341:1033357

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208241.1\|985320_985851_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_174895235.1\|985860_987192_+	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	1.9e-44	28.3
WP_174895236.1\|987258_988188_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872918.1\|988280_988766_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000051370.1\|988987_989227_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084285.1\|989625_990471_+	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000136809.1\|990491_992000_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250617.1\|992111_993122_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_174895237.1\|993218_993965_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000155239.1\|994071_994500_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802237.1\|994600_995197_+	YiiQ family protein	NA	NA	NA	NA
WP_001216335.1\|995309_996077_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_174895238.1\|996168_996933_-	epimerase	NA	NA	NA	NA
WP_001543603.1\|996942_997233_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_000774146.1\|997315_998191_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_174895239.1\|998219_999242_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000981826.1\|999270_1000272_-	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000911134.1\|1000268_1001312_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001167250.1\|1001305_1002841_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	30.0
WP_001283049.1\|1003096_1004056_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_174895240.1\|1004142_1005735_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_001173081.1\|1005748_1006099_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000061014.1\|1006335_1006500_-	hypothetical protein	NA	NA	NA	NA
WP_174895241.1\|1006597_1007320_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_174895242.1\|1007382_1008423_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_174895243.1\|1008432_1009392_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_174895244.1\|1009402_1010737_-	MFS transporter	NA	NA	NA	NA
WP_174895245.1\|1011001_1011757_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000758724.1\|1011857_1012847_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000591793.1\|1013011_1013974_-	6-phosphofructokinase	NA	NA	NA	NA
WP_002954865.1\|1014157_1015060_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
WP_174895246.1\|1015417_1016170_-	peptide transporter	NA	NA	NA	NA
1015945:1015961	attL	NA	NA	NA	NA
WP_174895247.1\|1018647_1018902_+\|integrase	integrase	S4TP66	Salmonella_phage	3.0e-20	82.3
WP_174895248.1\|1020508_1022212_-	hypothetical protein	F1BUJ7	Cronobacter_phage	2.4e-222	80.9
WP_174895249.1\|1022727_1023453_-	hypothetical protein	F1BUK1	Cronobacter_phage	5.0e-68	56.8
WP_174896649.1\|1023442_1023997_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.1e-88	87.3
WP_174895250.1\|1026129_1026717_-	hypothetical protein	F1BUK5	Cronobacter_phage	6.4e-90	82.6
WP_174895251.1\|1026709_1027894_-\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	1.5e-178	78.9
WP_001002797.1\|1027890_1028220_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_174895252.1\|1028216_1030184_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	1.9e-266	69.5
WP_023185862.1\|1030774_1031107_-	hypothetical protein	F1BUL2	Cronobacter_phage	2.6e-35	70.0
WP_000175560.1\|1031106_1031448_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_079892356.1\|1032202_1033330_-	DUF2586 family protein	F1BUL5	Cronobacter_phage	1.2e-174	83.2
WP_079895316.1\|1034503_1034956_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	4.7e-48	64.0
1033341:1033357	attR	NA	NA	NA	NA
WP_079895315.1\|1035049_1035241_-	hypothetical protein	Q8W634	Enterobacteria_phage	8.1e-10	55.4
WP_058673815.1\|1035966_1036995_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	7.5e-134	71.3

DBSCAN-SWA_3

1041265 : 1050223

Enterobacteria_phage(37.5%)

integrase

attL 1028583:1028597|attR 1049315:1049329

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1028583:1028597	attL	NA	NA	NA	NA
WP_080171132.1\|1041265_1041634_-	DUF2528 family protein	K7PGR6	Enterobacteria_phage	3.0e-29	52.1
WP_174895253.1\|1041698_1044395_-	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	5.5e-237	47.0
WP_174895254.1\|1044654_1045215_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	2.7e-21	34.1
WP_174895255.1\|1045224_1045557_-	hypothetical protein	NA	NA	NA	NA
WP_048227709.1\|1045559_1045829_-	hypothetical protein	Q1JS20	Enterobacteria_phage	2.0e-22	55.6
WP_174895256.1\|1045930_1046251_+	helix-turn-helix transcriptional regulator	A0A0U4ISL7	Pseudomonas_phage	3.4e-08	36.8
WP_174895257.1\|1046335_1047319_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	6.1e-125	67.3
WP_001233471.1\|1047503_1048004_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_001033731.1\|1048154_1048853_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580433.1\|1048849_1050223_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.1e-15	25.6
1049315:1049329	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2379967 : 2490585

Cronobacter_phage(28.57%)

portal,tRNA,capsid,head,transposase,plate,terminase,integrase,tail

attL 2385643:2385659|attR 2464403:2464421

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071651506.1\|2379967_2380120_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.0e-07	78.1
WP_079816476.1\|2380182_2380953_-	N-acetylmuramoyl-L-alanine amidase	A0A076YN96	Rhizobium_phage	3.0e-10	27.8
WP_174895092.1\|2382336_2383484_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-145	90.7
WP_174895702.1\|2384582_2385695_+	His-Xaa-Ser system radical SAM maturase HxsC	NA	NA	NA	NA
2385643:2385659	attL	NA	NA	NA	NA
WP_174895703.1\|2385691_2386294_+	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
2385643:2385659	attL	NA	NA	NA	NA
WP_174895704.1\|2386384_2388415_+	AAA family ATPase	NA	NA	NA	NA
WP_174895705.1\|2388411_2390094_+	ATP-dependent helicase	A0A1P8CWU5	Bacillus_phage	3.8e-10	24.9
WP_174895706.1\|2390626_2391523_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_174895707.1\|2391519_2392416_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_174895708.1\|2392405_2393962_-	recombinase family protein	Q9XJF6	Enterococcus_phage	8.4e-12	26.9
WP_174895709.1\|2394244_2395474_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	8.4e-209	87.3
WP_047748625.1\|2396022_2396361_+	hypothetical protein	J9Q6E9	Salmonella_phage	7.1e-09	36.9
WP_079916824.1\|2396372_2397140_+	hypothetical protein	NA	NA	NA	NA
WP_174894878.1\|2397247_2398606_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	2.2e-85	39.7
WP_079916823.1\|2398791_2399970_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	3.9e-211	94.6
WP_174895710.1\|2400502_2400964_-	ATPase	A0A1B5FPC7	Escherichia_phage	7.4e-41	51.2
WP_174895711.1\|2400960_2401173_-	hypothetical protein	A0A286S2B6	Klebsiella_phage	6.4e-24	77.1
WP_079918440.1\|2401169_2401394_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	4.3e-18	64.8
WP_174895712.1\|2401390_2401957_-	hypothetical protein	A0A088C4R7	Shewanella_sp._phage	6.8e-28	38.9
WP_174895713.1\|2401953_2402820_-	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	1.7e-126	76.1
WP_174895714.1\|2402819_2403101_-	hypothetical protein	NA	NA	NA	NA
WP_174895715.1\|2403100_2403514_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	8.6e-49	68.6
WP_174895716.1\|2403571_2405122_+	DEAD/DEAH box helicase	A0A1B5FPA4	Escherichia_phage	1.6e-260	86.5
WP_023237658.1\|2405118_2406087_+	toprim domain-containing protein	A0A1B5FPA8	Escherichia_phage	3.2e-179	95.3
WP_174895717.1\|2406086_2406947_+	helix-turn-helix domain-containing protein	A0A1B5FPA6	Escherichia_phage	6.0e-137	84.6
WP_174895718.1\|2406943_2407780_+	antitermination protein	A0A1B5FPA5	Escherichia_phage	4.2e-127	80.4
WP_001533567.1\|2407911_2408598_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.1e-130	98.2
WP_174895719.1\|2411413_2411944_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	4.9e-73	77.1
WP_174895720.1\|2411995_2413126_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	7.6e-39	36.9
WP_174895721.1\|2413510_2413897_-	hypothetical protein	NA	NA	NA	NA
WP_024172626.1\|2413896_2414367_-	SocA family protein	D0UIM3	Aggregatibacter_phage	7.1e-23	44.5
WP_174895722.1\|2414627_2414867_-	DinI family protein	K7P797	Enterobacteria_phage	3.8e-33	94.8
WP_001518569.1\|2417041_2417524_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242604.1\|2417673_2418150_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|2418139_2418430_+	RnfH family protein	NA	NA	NA	NA
WP_001203442.1\|2418591_2418930_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_174895723.1\|2419078_2420740_-	DNA repair protein RecN	NA	NA	NA	NA
WP_174895724.1\|2420825_2421704_-	NAD(+) kinase	NA	NA	NA	NA
WP_023187382.1\|2421827_2422421_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_127172650.1\|2422481_2423768_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|2423787_2424579_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_174895725.1\|2424744_2426106_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|2426358_2426607_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|2426625_2427174_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469807.1\|2427344_2428112_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|2428152_2428500_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_174895726.1\|2429155_2430226_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	8.1e-91	51.8
WP_174895727.1\|2430235_2431357_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_174895464.1\|2431546_2432905_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	2.2e-85	39.7
WP_174895728.1\|2433024_2433933_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200082.1\|2433893_2435054_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|2435153_2435201_-	hypothetical protein	NA	NA	NA	NA
WP_174895729.1\|2435365_2436358_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	5.0e-103	54.8
WP_174895730.1\|2436457_2436760_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	5.9e-23	56.0
WP_148977804.1\|2436855_2437182_+	hypothetical protein	NA	NA	NA	NA
WP_174895731.1\|2437212_2437545_+	hypothetical protein	NA	NA	NA	NA
WP_174895732.1\|2437554_2438115_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	7.2e-22	35.5
WP_174895733.1\|2438374_2441071_+	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	3.8e-238	47.1
2440210:2440226	attR	NA	NA	NA	NA
WP_080171132.1\|2441135_2441504_+	DUF2528 family protein	K7PGR6	Enterobacteria_phage	3.0e-29	52.1
2440210:2440226	attR	NA	NA	NA	NA
WP_174895734.1\|2441570_2441840_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	6.0e-35	80.7
WP_023187394.1\|2441893_2442913_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.0e-135	68.8
WP_031603163.1\|2444903_2445743_+\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	4.8e-46	52.0
WP_058673815.1\|2445777_2446806_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	7.5e-134	71.3
WP_079895314.1\|2446817_2447516_+\|terminase	terminase	F1BUM0	Cronobacter_phage	2.2e-60	51.7
WP_079895315.1\|2447534_2447726_+	hypothetical protein	Q8W634	Enterobacteria_phage	8.1e-10	55.4
WP_079895316.1\|2447819_2448272_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	4.7e-48	64.0
WP_000175560.1\|2451326_2451668_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_023185862.1\|2451667_2452000_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.6e-35	70.0
WP_000411498.1\|2452146_2452404_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	3.1e-20	61.0
WP_001002797.1\|2454553_2454883_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_174895251.1\|2454879_2456064_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	1.5e-178	78.9
WP_174895735.1\|2456652_2458764_+\|tail	phage tail protein	F1BUK3	Cronobacter_phage	2.0e-149	78.7
WP_174896673.1\|2458776_2459331_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	2.0e-88	87.8
WP_174895736.1\|2459320_2460046_+	hypothetical protein	F1BUK1	Cronobacter_phage	3.8e-68	56.8
WP_174895737.1\|2460017_2460563_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.5
WP_174895738.1\|2460562_2462266_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.1e-222	80.9
WP_174895739.1\|2463878_2464307_+	hypothetical protein	NA	NA	NA	NA
WP_000178449.1\|2464447_2464786_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197658.1\|2465057_2465795_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079130.1\|2465926_2466907_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_174895740.1\|2466903_2467635_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235096.1\|2467764_2470338_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.6
WP_000985653.1\|2476394_2476850_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_174895741.1\|2476953_2478255_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.0e-42	30.1
WP_001264473.1\|2478251_2478575_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_174896674.1\|2478619_2479975_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_174895742.1\|2480089_2482750_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_023194661.1\|2482803_2483484_-	DTW domain-containing protein	NA	NA	NA	NA
WP_001098732.1\|2483556_2483976_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000997368.1\|2484179_2485217_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_000179978.1\|2485332_2486022_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
WP_000627811.1\|2486340_2486724_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
WP_174895743.1\|2486785_2487364_-	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000365861.1\|2487466_2488366_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_174895744.1\|2488383_2489718_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.2e-43	29.7
WP_174895745.1\|2489847_2490585_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA

DBSCAN-SWA_5

2945769 : 3076956

113

Cronobacter_phage(36.73%)

portal,capsid,head,plate,lysis,transposase,terminase,tail,integrase,tRNA,holin

attL 2958145:2958162|attR 3001919:3001936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989296.1\|2945769_2946465_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_000045719.1\|2946461_2946860_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_000024658.1\|2946991_2947900_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000194222.1\|2948025_2949384_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_174895901.1\|2949395_2950433_+	gentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_174895902.1\|2950448_2951150_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_094964397.1\|2951158_2951803_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_000150099.1\|2951817_2953011_+	3-hydroxybenzoate 6-monooxygenase	NA	NA	NA	NA
WP_001264834.1\|2953119_2954058_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_000698460.1\|2954115_2954199_-	protein YohP	NA	NA	NA	NA
WP_174895903.1\|2954516_2955953_+	multidrug resistance outer membrane protein MdtQ	NA	NA	NA	NA
WP_000169608.1\|2956018_2956780_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_001523476.1\|2956827_2957397_-	DedA family protein	NA	NA	NA	NA
WP_001017057.1\|2957555_2958143_+	YIP1 family protein	NA	NA	NA	NA
2958145:2958162	attL	NA	NA	NA	NA
WP_000911555.1\|2958308_2959256_+	D-alanyl-D-alanine endopeptidase	NA	NA	NA	NA
WP_174895904.1\|2959314_2961045_-	D-lactate dehydrogenase	NA	NA	NA	NA
WP_174895905.1\|2961300_2963598_+	beta-glucosidase BglX	NA	NA	NA	NA
WP_171775276.1\|2963778_2964696_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_174895906.1\|2964699_2965866_+	ABC transporter permease	NA	NA	NA	NA
WP_079823561.1\|2965858_2966806_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-23	31.2
WP_174895907.1\|2966789_2967521_+	ABC transporter permease	NA	NA	NA	NA
WP_001234242.1\|2967501_2967609_-	protein YohO	NA	NA	NA	NA
WP_079804825.1\|2967668_2968400_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	5.9e-101	88.4
WP_174895908.1\|2968622_2970311_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.0e-273	90.8
WP_079804826.1\|2970303_2971023_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_174895909.1\|2971074_2971545_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.5e-70	85.3
WP_174895910.1\|2971669_2972128_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	5.4e-52	71.2
WP_174895911.1\|2972368_2974402_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.6e-55	27.6
WP_174895912.1\|2974566_2975676_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_000760402.1\|2975953_2976235_+	YehE family protein	NA	NA	NA	NA
WP_174895913.1\|2977105_2977786_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_174895914.1\|2977798_2980279_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_174895915.1\|2980288_2981302_+	hypothetical protein	NA	NA	NA	NA
WP_000837539.1\|2981354_2981669_-	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_076009991.1\|2982078_2982867_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000822241.1\|2982863_2983664_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_174895916.1\|2983700_2984447_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_174895917.1\|2984420_2985386_-	sugar kinase	NA	NA	NA	NA
WP_000642803.1\|2985382_2986387_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_174895918.1\|2986383_2987655_-	MFS transporter	NA	NA	NA	NA
WP_000129591.1\|2987908_2988961_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_174895919.1\|2989013_2989913_-	lipid kinase YegS	NA	NA	NA	NA
WP_174895920.1\|2991070_2991487_+	CesT family type III secretion system chaperone	NA	NA	NA	NA
WP_174895921.1\|2991912_2992926_-\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	8.3e-178	89.6
WP_080171139.1\|2993041_2993341_-	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.3e-43	85.9
WP_080171138.1\|2993458_2993734_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.5e-41	81.3
WP_080171136.1\|2994071_2994632_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	7.9e-21	33.5
WP_174895253.1\|2994891_2997588_+	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	5.5e-237	47.0
WP_080171132.1\|2997652_2998021_+	DUF2528 family protein	K7PGR6	Enterobacteria_phage	3.0e-29	52.1
WP_174895922.1\|2998089_2998359_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	1.7e-34	79.5
WP_174895923.1\|2998412_2999432_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.9e-135	68.5
WP_174895924.1\|2999428_3001213_-\|terminase	terminase	F1BUM5	Cronobacter_phage	1.3e-247	69.5
WP_058673815.1\|3002296_3003325_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	7.5e-134	71.3
3001919:3001936	attR	NA	NA	NA	NA
WP_079895314.1\|3003336_3004035_+\|terminase	terminase	F1BUM0	Cronobacter_phage	2.2e-60	51.7
WP_079895315.1\|3004053_3004245_+	hypothetical protein	Q8W634	Enterobacteria_phage	8.1e-10	55.4
WP_079895316.1\|3004338_3004791_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	4.7e-48	64.0
WP_079895317.1\|3004787_3005270_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	8.8e-37	48.7
WP_174895925.1\|3005266_3005971_+	hypothetical protein	F1BUL6	Cronobacter_phage	1.5e-69	59.1
WP_079892356.1\|3005967_3007095_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	1.2e-174	83.2
WP_023185863.1\|3007091_3007547_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.3e-58	72.2
WP_001154426.1\|3007559_3007856_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	2.4e-16	48.2
WP_000175560.1\|3007852_3008194_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_023185862.1\|3008193_3008526_+	hypothetical protein	F1BUL2	Cronobacter_phage	2.6e-35	70.0
WP_000411498.1\|3008672_3008930_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	3.1e-20	61.0
WP_001002797.1\|3011080_3011410_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_174895926.1\|3011406_3012591_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	8.8e-179	78.6
WP_174895250.1\|3012583_3013171_+	hypothetical protein	F1BUK5	Cronobacter_phage	6.4e-90	82.6
WP_174896649.1\|3015302_3015857_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.1e-88	87.3
WP_174895249.1\|3015846_3016572_+	hypothetical protein	F1BUK1	Cronobacter_phage	5.0e-68	56.8
WP_023185855.1\|3016543_3017089_+	hypothetical protein	F1BUJ9	Cronobacter_phage	1.9e-59	72.5
WP_174895738.1\|3017088_3018792_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.1e-222	80.9
WP_174895927.1\|3020403_3020832_+	hypothetical protein	NA	NA	NA	NA
WP_001517981.1\|3021095_3022457_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.3e-207	95.4
WP_000137927.1\|3022596_3023319_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.6
WP_000870068.1\|3023315_3024719_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	2.1e-30	29.0
WP_174895928.1\|3024718_3026131_-	MFS transporter	NA	NA	NA	NA
WP_174895929.1\|3026127_3029208_-	multidrug efflux RND transporter permease subunit MdtC	S5VTK5	Leptospira_phage	4.9e-64	22.9
WP_174895930.1\|3029208_3032331_-	multidrug efflux RND transporter permease subunit MdtB	NA	NA	NA	NA
WP_079804763.1\|3032330_3033572_-	multidrug efflux RND transporter subunit MdtA	NA	NA	NA	NA
WP_074430376.1\|3033854_3033914_+	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
WP_174895931.1\|3034012_3035365_-	molecular chaperone	NA	NA	NA	NA
WP_079823546.1\|3035498_3036368_+	DNA-3-methyladenine glycosylase 2	NA	NA	NA	NA
WP_174895932.1\|3036335_3039323_-	MASE1 domain-containing protein	NA	NA	NA	NA
WP_000132082.1\|3039653_3040295_+	uridine kinase	A0A1V0SAA3	Catovirus	2.5e-34	36.9
WP_079804710.1\|3040385_3040967_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.6e-32	42.6
WP_174895933.1\|3041005_3042862_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
WP_174895934.1\|3042947_3044528_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	8.2e-39	45.4
WP_079804714.1\|3045201_3046341_+	polysaccharide export protein	NA	NA	NA	NA
WP_000482224.1\|3046346_3046796_+	low molecular weight protein-tyrosine-phosphatase Wzb	NA	NA	NA	NA
WP_174895935.1\|3046792_3048952_+	tyrosine-protein kinase Wzc	A0A1X9I5D6	Streptococcus_phage	5.4e-17	30.8
WP_000205695.1\|3049038_3049881_+	colanic acid biosynthesis glycosyltransferase WcaA	NA	NA	NA	NA
WP_000888724.1\|3049883_3050372_+	colanic acid biosynthesis acetyltransferase WcaB	NA	NA	NA	NA
WP_174895936.1\|3050368_3051586_+	colanic acid biosynthesis glycosyltransferase WcaC	NA	NA	NA	NA
WP_000091392.1\|3051560_3052775_+	putative colanic acid polymerase WcaD	NA	NA	NA	NA
WP_174895937.1\|3052787_3053534_+	colanic acid biosynthesis glycosyltransferase WcaE	NA	NA	NA	NA
WP_001153600.1\|3053549_3054104_+	colanic acid biosynthesis acetyltransferase WcaF	NA	NA	NA	NA
WP_000048166.1\|3054127_3055249_+	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	5.3e-133	65.5
WP_071650738.1\|3055251_3056217_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	3.5e-85	50.5
WP_071650739.1\|3056219_3056693_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_023187279.1\|3056689_3057913_+	colanic acid biosynthesis fucosyltransferase WcaI	NA	NA	NA	NA
WP_174895938.1\|3057909_3059352_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	7.2e-50	29.5
WP_079807452.1\|3060884_3062279_+	undecaprenyl-phosphate glucose phosphotransferase	NA	NA	NA	NA
WP_174895939.1\|3062280_3063759_+	colanic acid undecaprenyl disphosphate flippase WzxC	NA	NA	NA	NA
WP_174895940.1\|3063820_3065101_+	colanic acid biosynthesis pyruvyl transferase WcaK	NA	NA	NA	NA
WP_174895941.1\|3065097_3066318_+	colanic acid biosynthesis glycosyltransferase WcaL	NA	NA	NA	NA
WP_001111207.1\|3066328_3067732_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.6e-20	31.9
WP_071650745.1\|3067908_3068802_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	3.6e-44	42.2
WP_174895942.1\|3069137_3070268_+	glycosyltransferase	NA	NA	NA	NA
WP_174895943.1\|3070413_3071850_+	mannose-1-phosphate guanyltransferase	A0A1V0SH58	Hokovirus	1.1e-55	30.4
WP_174895944.1\|3071945_3073313_+	colanic acid biosynthesis phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	1.4e-31	26.5
WP_174895945.1\|3073309_3074596_+	hypothetical protein	NA	NA	NA	NA
WP_174896681.1\|3074651_3075803_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
WP_174895765.1\|3075918_3076956_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_6

3098128 : 3149698

Salmonella_phage(33.33%)

tail,transposase,integrase

attL 3127620:3127637|attR 3157599:3157616

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174894878.1\|3098128_3099487_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	2.2e-85	39.7
WP_111722124.1\|3099640_3101071_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_171775225.1\|3101246_3102428_+\|integrase	tyrosine-type recombinase/integrase	A0A0M4QX09	Salmonella_phage	6.4e-214	91.1
WP_174895958.1\|3102408_3102600_-	AlpA family transcriptional regulator	A0A0M4RTZ2	Salmonella_phage	7.0e-22	79.0
WP_174895959.1\|3102889_3103333_-	hypothetical protein	NA	NA	NA	NA
WP_174895960.1\|3103361_3103613_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174895961.1\|3103824_3104394_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.1e-89	85.2
WP_174895962.1\|3104596_3105115_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_174895963.1\|3105163_3105433_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_023239910.1\|3105472_3105649_-	hypothetical protein	NA	NA	NA	NA
WP_174895964.1\|3106632_3108909_+	thiosulfate reductase PhsA	NA	NA	NA	NA
WP_001016228.1\|3108923_3109502_+	thiosulfate reductase electron transport protein PhsB	A0A077SL61	Escherichia_phage	1.9e-22	37.6
WP_174895965.1\|3109498_3110263_+	thiosulfate reductase cytochrome B subunit	NA	NA	NA	NA
WP_174895966.1\|3110386_3111559_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	9.9e-199	87.1
WP_079804755.1\|3111704_3112172_+	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_079804756.1\|3112290_3113349_+	FUSC family protein	NA	NA	NA	NA
WP_000450405.1\|3113592_3113928_+	DUF496 family protein	NA	NA	NA	NA
WP_174895967.1\|3114626_3116078_+	cobyric acid synthase	NA	NA	NA	NA
WP_174895968.1\|3116255_3117185_+	L,D-transpeptidase	NA	NA	NA	NA
WP_174895969.1\|3117890_3120791_+	RHS repeat protein	NA	NA	NA	NA
WP_171774052.1\|3123378_3123546_-	hypothetical protein	NA	NA	NA	NA
WP_023186591.1\|3123597_3123732_-	ash family protein	NA	NA	NA	NA
WP_174895092.1\|3126471_3127618_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-145	90.7
3127620:3127637	attL	NA	NA	NA	NA
WP_174895970.1\|3127638_3131403_-	hypothetical protein	NA	NA	NA	NA
WP_174895971.1\|3131482_3132415_-	hypothetical protein	NA	NA	NA	NA
WP_174895972.1\|3132418_3133414_-	nucleotidyltransferase	NA	NA	NA	NA
WP_174895973.1\|3134490_3135378_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_174895974.1\|3136789_3137827_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_174895975.1\|3137836_3138796_-	DMT family transporter	NA	NA	NA	NA
WP_174895976.1\|3138917_3140414_-	acyl--CoA ligase	NA	NA	NA	NA
WP_174895974.1\|3140988_3142026_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_174895977.1\|3142223_3143219_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_174895978.1\|3143368_3144247_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_174895979.1\|3145021_3146212_-\|integrase	tyrosine-type recombinase/integrase	B7SYF8	Stenotrophomonas_phage	1.8e-70	41.5
WP_174896683.1\|3146584_3148036_-	EmmdR/YeeO family multidrug/toxin efflux MATE transporter	NA	NA	NA	NA
WP_174895980.1\|3148435_3149698_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	9.0e-73	40.2
3157599:3157616	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3943764 : 4001543

Escherichia_phage(21.43%)

tRNA,holin,transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_162007618.1\|3943764_3944283_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_000272241.1\|3944279_3944387_-	hypothetical protein	NA	NA	NA	NA
WP_174896282.1\|3944593_3945040_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_174896283.1\|3945019_3945814_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_174896284.1\|3945914_3947099_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_001222527.1\|3947217_3947565_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_000487128.1\|3947550_3947862_-	hypothetical protein	NA	NA	NA	NA
WP_000673492.1\|3947930_3948182_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_001589065.1\|3948377_3948476_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_000512149.1\|3948614_3948863_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_000762776.1\|3949177_3949819_-	hypothetical protein	NA	NA	NA	NA
WP_000513733.1\|3950048_3950231_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_001248993.1\|3950233_3950596_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000457190.1\|3950768_3951407_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_174896285.1\|3951602_3952148_-	chorismate mutase	NA	NA	NA	NA
WP_001524298.1\|3952230_3952386_+	hypothetical protein	NA	NA	NA	NA
WP_000208086.1\|3952464_3952713_+	hypothetical protein	NA	NA	NA	NA
WP_000190263.1\|3952967_3953816_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001562706.1\|3953884_3954478_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_086776411.1\|3954622_3955411_-	cryptic aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9)	NA	NA	NA	NA
WP_174894878.1\|3955652_3957011_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	2.2e-85	39.7
WP_174896697.1\|3957132_3957780_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_174896286.1\|3957976_3958303_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
WP_174896698.1\|3958496_3959630_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_000947460.1\|3959711_3960302_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_174896287.1\|3960295_3961093_-	ATP-binding cassette domain-containing protein	A0A2R8FG22	Brazilian_cedratvirus	1.8e-10	31.2
WP_174896288.1\|3961086_3961899_-	ABC transporter permease	NA	NA	NA	NA
WP_174896699.1\|3961888_3962863_-	ABC transporter permease	NA	NA	NA	NA
WP_174896289.1\|3962862_3964503_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000182479.1\|3965191_3965506_+	hypothetical protein	NA	NA	NA	NA
WP_000929971.1\|3965654_3966185_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	3.7e-36	70.5
WP_174896290.1\|3966267_3967311_-	exo-alpha-sialidase	NA	NA	NA	NA
WP_001218118.1\|3967649_3968117_-	Hsp20 family protein	NA	NA	NA	NA
WP_174896291.1\|3968311_3968542_-	hypothetical protein	NA	NA	NA	NA
WP_002951235.1\|3969256_3969601_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_174896292.1\|3970812_3971370_-	Ail/Lom family outer membrane beta-barrel protein	Q9LA63	Enterobacterial_phage	8.4e-15	31.6
WP_079803535.1\|3972176_3972440_+	virulence factor	NA	NA	NA	NA
WP_174896293.1\|3972664_3972877_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_174896294.1\|3973423_3973945_+	RICIN domain-containing protein	NA	NA	NA	NA
WP_079803534.1\|3974152_3974392_+	virulence protein MsgA	K7P6H1	Enterobacteria_phage	1.9e-32	87.3
WP_174894878.1\|3974606_3975965_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	2.2e-85	39.7
WP_174896295.1\|3976094_3980249_-	autotransporter outer membrane beta-barrel domain-containing protein	Q9LA54	Enterobacteria_phage	7.1e-300	41.8
WP_174896296.1\|3980741_3983012_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_079803531.1\|3983429_3983831_+	PPC domain-containing protein	NA	NA	NA	NA
WP_000588501.1\|3984361_3984652_+	Bor family protein	C6ZCX3	Enterobacteria_phage	2.3e-32	70.8
WP_174896297.1\|3988207_3990334_-	E3 ubiquitin--protein ligase	Q9MBL9	Phage_Gifsy-2	1.3e-58	77.9
WP_051124265.1\|3990830_3991955_-	type III secretion system effector SopF	NA	NA	NA	NA
WP_174896298.1\|3993596_3993878_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.2e-35	78.5
WP_001294873.1\|3993864_3994254_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	4.8e-41	72.5
WP_000444203.1\|3994499_3994841_+	hypothetical protein	NA	NA	NA	NA
WP_001663850.1\|3994877_3995687_-\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_000658043.1\|3995813_3996002_-	hypothetical protein	NA	NA	NA	NA
WP_023227239.1\|3996310_3997006_-	hypothetical protein	NA	NA	NA	NA
WP_174896299.1\|3997307_3998144_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	5.5e-119	76.3
WP_000609694.1\|3998140_3998413_-	hypothetical protein	A0A1B5FPA6	Escherichia_phage	2.7e-27	76.3
WP_174896300.1\|3999487_4000027_+	HD family hydrolase	A0A192Y8M4	Salmonella_phage	4.7e-95	97.2
WP_174896301.1\|4000169_4000406_+	excisionase	NA	NA	NA	NA
WP_174895765.1\|4000505_4001543_+\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_8

4200414 : 4210600

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174896373.1\|4200414_4203027_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.4e-19	22.9
WP_174896374.1\|4203451_4203676_+	DinI family protein	K7PKM2	Enterobacterial_phage	8.5e-27	87.7
WP_174896704.1\|4204393_4205203_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	8.4e-64	50.2
WP_174896375.1\|4205365_4205743_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	9.7e-15	38.2
WP_174896376.1\|4205910_4206462_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	1.2e-69	65.5
WP_174896377.1\|4206658_4207390_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	2.1e-58	50.0
WP_174896378.1\|4207538_4207697_-	hypothetical protein	NA	NA	NA	NA
WP_174896379.1\|4209669_4210095_-	subtilase cytotoxin subunit B-like protein	NA	NA	NA	NA
WP_174896380.1\|4210021_4210600_-	hypothetical protein	A0A0U2KD26	Escherichia_phage	4.4e-51	66.5

DBSCAN-SWA_9

4659424 : 4701959

Salmonella_phage(62.96%)

portal,coat,lysis,terminase,integrase,tail,holin

attL 4659253:4659297|attR 4701975:4702019

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4659253:4659297	attL	NA	NA	NA	NA
WP_174896564.1\|4659424_4661608_-	hypothetical protein	A0A193GYB8	Enterobacter_phage	1.5e-147	46.8
WP_174896565.1\|4661710_4661998_+	Arc family DNA-binding protein	A0A088CPT2	Enterobacteria_phage	4.2e-26	66.7
WP_058820361.1\|4662037_4662811_-	ORF6N domain-containing protein	H6WRU9	Salmonella_phage	1.0e-79	66.1
WP_174896715.1\|4662894_4663533_-	hypothetical protein	H6WRU8	Salmonella_phage	2.2e-96	82.5
WP_021548180.1\|4663606_4663780_-	hypothetical protein	NA	NA	NA	NA
WP_174896566.1\|4663877_4664738_+	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	2.7e-20	35.1
WP_174896567.1\|4664826_4665312_+	hypothetical protein	NA	NA	NA	NA
WP_174896568.1\|4665402_4667334_-	lytic transglycosylase domain-containing protein	Q716G2	Shigella_phage	8.9e-306	88.9
WP_174896569.1\|4667333_4668683_-	phage DNA ejection protein	B9UDL0	Salmonella_phage	5.2e-244	98.7
WP_000964907.1\|4668692_4669382_-	hypothetical protein	A0A1R3Y5P8	Salmonella_virus	5.4e-88	97.8
WP_001531194.1\|4669384_4669840_-	DUF2824 family protein	I6R0L6	Salmonella_phage	8.8e-87	99.3
WP_174896570.1\|4669839_4670541_-\|tail	phage tail protein	A0A0M4QWW6	Salmonella_phage	1.1e-75	97.4
WP_174896571.1\|4670609_4671101_+	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	1.6e-30	45.6
WP_174896572.1\|4671104_4672523_-	packaged DNA stabilization protein gp10	B9UDK6	Salmonella_phage	2.3e-266	94.7
WP_001166096.1\|4672482_4672983_-	packaged DNA stabilization protein p27	I6RSF6	Salmonella_phage	2.5e-90	100.0
WP_174896573.1\|4672966_4673527_-	hypothetical protein	I6S1J7	Salmonella_phage	2.5e-99	93.0
WP_065348417.1\|4673567_4674860_-\|coat	coat protein	A0A075B8L2	Enterobacteria_phage	4.2e-243	99.5
WP_174896574.1\|4674859_4675771_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	5.4e-160	99.0
WP_174896575.1\|4675784_4677962_-\|portal	portal protein	A0A0M4RCZ3	Salmonella_phage	0.0e+00	98.3
WP_174896576.1\|4678010_4678511_+	HNH endonuclease	A0A0M4R2Z1	Salmonella_phage	2.1e-94	98.8
WP_023892386.1\|4678514_4680014_-\|terminase	terminase	A0A192Y824	Salmonella_phage	4.1e-306	99.6
WP_174896577.1\|4679991_4680480_-	DNA-packaging protein	A8CGG1	Salmonella_phage	6.5e-88	99.4
WP_174896578.1\|4680503_4680683_-	hypothetical protein	Q9AZ02	Salmonella_phage	2.7e-23	93.2
WP_000807788.1\|4680684_4680927_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_174896579.1\|4681230_4681920_-	Rha family transcriptional regulator	Q5G8R0	Enterobacteria_phage	4.7e-124	98.7
WP_174896580.1\|4682137_4682575_-\|lysis	lysis protein	A0A0N6WGE8	Salmonella_phage	1.7e-71	97.2
WP_174896716.1\|4682571_4683009_-	lysozyme	Q5G8R3	Enterobacteria_phage	7.4e-75	98.6
WP_000738703.1\|4682992_4683319_-\|holin	phage holin, lambda family	Q5G8R5	Enterobacteria_phage	1.7e-52	100.0
WP_174896581.1\|4683696_4684185_-	DUF1133 family protein	A0A192Y911	Salmonella_phage	4.2e-79	87.7
WP_174896582.1\|4684181_4684364_-	hypothetical protein	C6ZR61	Salmonella_phage	3.0e-22	93.3
WP_174896583.1\|4684351_4684822_-	hypothetical protein	C6ZR60	Salmonella_phage	4.4e-89	96.2
WP_001749499.1\|4684802_4685039_-	hypothetical protein	C6ZR59	Salmonella_phage	3.4e-34	88.5
WP_174896584.1\|4685031_4685202_-	NinF family protein	Q5G8S2	Enterobacteria_phage	5.7e-23	89.1
WP_001659070.1\|4685198_4685375_-	NinE family protein	I6RSI9	Salmonella_phage	2.3e-27	100.0
WP_000679702.1\|4685341_4685515_-	hypothetical protein	C6ZR56	Salmonella_phage	5.2e-32	100.0
WP_174896585.1\|4685511_4685949_-	recombination protein NinB	C6ZR55	Salmonella_phage	7.9e-77	97.2
WP_079918900.1\|4686022_4686301_-	hypothetical protein	Q5G8S7	Enterobacteria_phage	2.1e-46	94.6
WP_174896586.1\|4686301_4688182_-	toprim domain-containing protein	Q5G8S8	Enterobacteria_phage	0.0e+00	99.0
WP_174896587.1\|4689169_4689460_-	hypothetical protein	I6RSP4	Salmonella_phage	2.6e-44	97.9
WP_001059982.1\|4689590_4689800_-	helix-turn-helix transcriptional regulator	I6S1U2	Salmonella_phage	2.1e-35	100.0
WP_174896588.1\|4689909_4690563_+	LexA family transcriptional regulator	I6R0S2	Salmonella_phage	4.3e-127	99.1
WP_174896717.1\|4690562_4691033_+	hypothetical protein	B9UDH1	Salmonella_phage	2.6e-78	95.5
WP_080151913.1\|4691064_4691418_+	hypothetical protein	NA	NA	NA	NA
WP_000834175.1\|4691554_4691758_-	hypothetical protein	A0A2H5BFH9	Salmonella_phage	2.0e-27	100.0
WP_174896589.1\|4692114_4692477_+	antitermination protein	C6ZR44	Salmonella_phage	3.4e-57	93.3
WP_174896590.1\|4692550_4693777_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	2.2e-68	99.2
WP_000983400.1\|4693986_4694121_+	hypothetical protein	K7PHK2	Enterobacteria_phage	1.4e-08	68.2
WP_001191777.1\|4694105_4694258_+	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_174896718.1\|4694342_4694651_+	hypothetical protein	K7PJM4	Enterobacteria_phage	7.3e-53	98.0
WP_006786550.1\|4694647_4695550_+	recombinase RecT	K7PKG9	Enterobacteria_phage	1.7e-145	87.5
WP_064013238.1\|4695533_4696016_+	siphovirus Gp157 family protein	K7P6T5	Enterobacteria_phage	5.1e-77	96.2
WP_023200936.1\|4696027_4696342_+	hypothetical protein	A0A0M4R304	Salmonella_phage	2.1e-47	95.2
WP_023993441.1\|4696358_4696529_+	DUF2737 family protein	A0A0N7CAQ8	Salmonella_phage	1.8e-24	98.2
WP_174896591.1\|4696516_4696930_+	hypothetical protein	A0A0N6WGF1	Salmonella_phage	3.4e-21	57.3
WP_174896592.1\|4696926_4697262_+	hypothetical protein	H6WRY0	Salmonella_phage	8.3e-50	93.6
WP_174896593.1\|4697263_4698583_+	phosphoadenosine phosphosulfate reductase family protein	Q8W6P3	Burkholderia_virus	3.6e-40	32.2
WP_023230812.1\|4698593_4698803_+	hypothetical protein	NA	NA	NA	NA
WP_024140007.1\|4700234_4700507_+	hypothetical protein	A0A2H4FNB3	Salmonella_phage	6.9e-39	100.0
WP_174896594.1\|4700795_4701959_+\|integrase	site-specific integrase	B9UDL9	Salmonella_phage	1.0e-224	98.4
4701975:4702019	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP054717

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5667 : 60584

Escherichia_phage(31.25%)

bacteriocin,transposase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_102025837.1\|5667_6767_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-47	42.2
WP_174896744.1\|7224_13059_-	inverse autotransporter beta domain-containing protein	NA	NA	NA	NA
WP_174895649.1\|14734_16093_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.9e-84	39.5
WP_174896745.1\|16847_17369_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_174896746.1\|17365_18319_+	fec operon regulator FecR	NA	NA	NA	NA
WP_174896747.1\|18405_20730_+	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_174896748.1\|21692_22691_+	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_174896749.1\|22687_23644_+	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_174896750.1\|23644_24412_+	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	4.9e-13	26.7
WP_004178129.1\|25539_25773_-	hypothetical protein	NA	NA	NA	NA
WP_174896751.1\|26579_27353_-	sprT domain-containing protein	NA	NA	NA	NA
WP_000780222.1\|27731_28013_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_000493286.1\|27993_28323_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_174896752.1\|28435_28867_-	hypothetical protein	NA	NA	NA	NA
WP_080096647.1\|29699_29936_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_171774016.1\|30023_30566_+	colicin immunity protein Cui	NA	NA	NA	NA
WP_171774047.1\|32417_32801_+	Exc2 family lipoprotein	NA	NA	NA	NA
WP_174896753.1\|33389_33959_+	hypothetical protein	NA	NA	NA	NA
WP_174896754.1\|34026_34197_-	hypothetical protein	NA	NA	NA	NA
WP_174896755.1\|34187_34403_+	hypothetical protein	NA	NA	NA	NA
WP_174896829.1\|34497_34857_-	helix-turn-helix domain-containing protein	A0A222YXG1	Escherichia_phage	4.1e-55	87.3
WP_168445557.1\|34862_35165_-	type II toxin-antitoxin system HigB family toxin	A0A0P0ZE17	Stx2-converting_phage	1.7e-17	45.1
WP_174896756.1\|35226_35976_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_174896757.1\|36011_36497_-	hypothetical protein	NA	NA	NA	NA
WP_174896758.1\|36711_37644_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_174896759.1\|38305_39217_-	DMT family transporter	NA	NA	NA	NA
WP_174896760.1\|39312_40341_-	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_174896761.1\|41060_41663_-	hypothetical protein	A0A219UQS0	Bacillus_phage	2.7e-06	30.3
WP_174896762.1\|41941_42268_-	hypothetical protein	NA	NA	NA	NA
WP_174896763.1\|42260_42557_-	hypothetical protein	NA	NA	NA	NA
WP_174896764.1\|42903_43212_-	hypothetical protein	NA	NA	NA	NA
WP_174896765.1\|43350_43968_+	riboflavin synthase subunit alpha	A0A1V0SE20	Indivirus	3.8e-16	32.8
WP_174896766.1\|44010_44373_-	hypothetical protein	H7BVT3	unidentified_phage	5.0e-08	38.5
WP_174896767.1\|44501_45017_+	hypothetical protein	NA	NA	NA	NA
WP_174896768.1\|45265_45661_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_174896769.1\|45668_46625_-	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	5.4e-94	54.1
WP_174896770.1\|46945_47380_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.5
WP_174896771.1\|48764_49742_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	8.2e-82	52.2
WP_174896772.1\|49741_50947_-	ParA family protein	A0A077SL49	Escherichia_phage	8.1e-164	69.6
WP_174896773.1\|51909_52950_-\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	5.2e-183	87.9
WP_023229282.1\|53558_54500_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
WP_174896774.1\|54651_55575_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_085398029.1\|55612_56701_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_085398018.1\|56710_57532_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_174896830.1\|58205_58709_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_095472388.1\|59441_59900_+\|transposase	IS200/IS605 family transposase	D9CGB6	Hyperthermophilic_Archaeal_Virus_2	3.4e-14	35.3
WP_174896775.1\|60087_60234_-\|lysis	colicin release lysis protein	NA	NA	NA	NA
WP_174896776.1\|60320_60584_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_2

72253 : 148728

Aeromonas_phage(18.18%)

protease,transposase,integrase,coat,holin

attL 84933:84960|attR 112811:112838

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174896791.1\|72253_73414_+\|coat	spore coat protein CotH	NA	NA	NA	NA
WP_174896833.1\|73900_75382_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_174896792.1\|75378_75771_+	conjugal transfer protein	NA	NA	NA	NA
WP_174896793.1\|75858_76173_+	hypothetical protein	NA	NA	NA	NA
WP_174896794.1\|77027_79355_+	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	4.7e-35	26.9
WP_174896795.1\|79366_79822_+	H-NS histone family protein	NA	NA	NA	NA
WP_174896834.1\|79900_80287_+	hypothetical protein	NA	NA	NA	NA
WP_174896796.1\|80713_81640_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_174896797.1\|81864_83097_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_174896798.1\|83134_84325_+	cystathionine beta-lyase	NA	NA	NA	NA
84933:84960	attL	NA	NA	NA	NA
WP_174896799.1\|85516_85792_+	hypothetical protein	NA	NA	NA	NA
WP_000389613.1\|87160_87856_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_071678786.1\|88359_89142_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	1.9e-52	92.9
WP_057394649.1\|89686_89977_-	cytoplasmic protein	NA	NA	NA	NA
WP_001159874.1\|89978_90284_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813642.1\|90285_90504_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_171774035.1\|91215_91830_+	DNA-binding protein	NA	NA	NA	NA
WP_174896800.1\|92000_92231_+	hypothetical protein	NA	NA	NA	NA
WP_174896801.1\|92261_92567_+	cytoplasmic protein	NA	NA	NA	NA
WP_171774034.1\|93098_93629_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171774033.1\|93632_93902_-	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_077907168.1\|94755_95748_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	6.6e-103	60.3
WP_174896802.1\|96263_99215_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	3.5e-51	22.6
WP_174896731.1\|99333_99951_+	recombinase family protein	A0A219Y912	Aeromonas_phage	2.7e-22	35.3
WP_174896803.1\|100057_100918_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	5.3e-08	21.7
WP_171774032.1\|101938_102235_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_171774031.1\|102221_102488_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_174896804.1\|102944_103238_-	hypothetical protein	NA	NA	NA	NA
WP_171774006.1\|103234_103687_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_171774005.1\|103792_104146_-	hypothetical protein	NA	NA	NA	NA
WP_174896805.1\|104198_104447_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_171774003.1\|105311_105677_+	hypothetical protein	NA	NA	NA	NA
WP_171774002.1\|105716_106844_+	acyl-protein synthase	NA	NA	NA	NA
WP_174896806.1\|106845_109254_+	AMP-binding protein	NA	NA	NA	NA
WP_174896807.1\|109292_110594_+	phenylacetate--CoA ligase family protein	NA	NA	NA	NA
WP_174896808.1\|110590_111475_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174896809.1\|112807_113164_-	recombinase family protein	NA	NA	NA	NA
112811:112838	attR	NA	NA	NA	NA
WP_174896810.1\|113474_113594_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174896811.1\|113666_114062_+	recombinase family protein	A0A219YB42	Aeromonas_phage	3.5e-15	45.0
WP_174896812.1\|114614_115067_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_114047722.1\|115066_115324_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_171773995.1\|116249_118028_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_174896813.1\|118516_119704_+	knotted carbamoyltransferase YgeW	NA	NA	NA	NA
WP_171773994.1\|119765_120965_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_171773993.1\|121028_122240_+	YgeY family selenium metabolism-linked hydrolase	NA	NA	NA	NA
WP_174896814.1\|122290_123697_+	dihydropyrimidinase	NA	NA	NA	NA
WP_174896815.1\|123709_124642_+	carbamate kinase	NA	NA	NA	NA
WP_024274377.1\|124692_125526_-	XdhC family protein	NA	NA	NA	NA
WP_174896816.1\|126057_129162_+	putative selenate reductase subunit YgfK	NA	NA	NA	NA
WP_164852917.1\|129164_130496_+	putative aminohydrolase SsnA	NA	NA	NA	NA
WP_004103174.1\|130593_131070_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_174896817.1\|131066_133007_-	formate-dependent uric acid utilization protein YgfT	NA	NA	NA	NA
WP_174896818.1\|133518_134994_+	purine permease	Q9KX94	Enterobacteria_phage	8.2e-25	27.5
WP_171773988.1\|135127_137275_+	formate dehydrogenase subunit alpha	A0A077SK27	Escherichia_phage	3.6e-29	23.8
WP_032728392.1\|137349_137955_-	CTP--molybdopterin cytidylyltransferase	NA	NA	NA	NA
WP_004103181.1\|138020_138479_-	(2Fe-2S)-binding protein	A0A0P0IVM8	Acinetobacter_phage	1.6e-19	36.6
WP_174896819.1\|138491_141704_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_174895092.1\|147581_148728_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-145	90.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054718

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

2. NZ_CP054715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP054717

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection