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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP054745 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p1, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP054744 Klebsiella pneumoniae strain KP20194c4 chromosome, complete genome 1 crisprs csa3,RT,cas3,DEDDh,DinG,WYL 0 0 12 0
NZ_CP054749 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054746 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p2, complete sequence 0 crisprs RT 0 0 2 0
NZ_CP054748 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p4, complete sequence 0 crisprs RT 0 0 0 0
NZ_CP054747 Klebsiella pneumoniae strain KP20194c4 plasmid pKP20194c4-p3, complete sequence 0 crisprs RT 0 0 1 0

Results visualization

1. NZ_CP054745
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 15236 : 41366 20 Salmonella_phage(50.0%) integrase,transposase NA
DBSCAN-SWA_2 81517 : 150119 57 Escherichia_phage(17.65%) protease,transposase NA
DBSCAN-SWA_3 186867 : 194296 6 Stx2-converting_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP054744
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054744_1 4601652-4601746 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 448676 : 528774 78 uncultured_Caudovirales_phage(57.14%) protease,terminase,head,tRNA,portal,tail,capsid,integrase,transposase attL 466284:466301|attR 482279:482296
DBSCAN-SWA_2 1176773 : 1262106 97 Salmonella_phage(69.23%) lysis,plate,terminase,tRNA,head,portal,tail,capsid,integrase,transposase attL 1190527:1190546|attR 1239207:1239226
DBSCAN-SWA_3 1368128 : 1434353 71 Salmonella_phage(32.08%) protease,holin,terminase,tail,integrase,transposase attL 1369123:1369140|attR 1437101:1437118
DBSCAN-SWA_4 1746162 : 1753067 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1797612 : 1808636 9 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_6 2798569 : 2809456 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_7 3002726 : 3074491 83 uncultured_Caudovirales_phage(33.33%) holin,terminase,plate,integrase,transposase attL 3065604:3065618|attR 3071613:3071627
DBSCAN-SWA_8 3107424 : 3159113 60 Enterobacteria_phage(29.41%) integrase,protease,holin,transposase attL 3107206:3107221|attR 3134471:3134486
DBSCAN-SWA_9 3264837 : 3372722 125 Klebsiella_phage(35.44%) protease,holin,terminase,head,tRNA,portal,tail,capsid,integrase attL 3291640:3291654|attR 3373062:3373076
DBSCAN-SWA_10 3591230 : 3684181 94 Salmonella_phage(58.62%) protease,lysis,terminase,tRNA,head,tail,plate,portal,capsid,integrase attL 3646756:3646774|attR 3684256:3684274
DBSCAN-SWA_11 4338365 : 4350018 13 Enterobacteria_phage(70.0%) integrase attL 4338815:4338829|attR 4361871:4361885
DBSCAN-SWA_12 4820655 : 4830180 11 Enterobacteria_phage(85.71%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP054746
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1796 : 55955 52 Escherichia_phage(40.0%) transposase,protease NA
DBSCAN-SWA_2 93443 : 104602 10 Escherichia_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP054747
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 40665 : 58379 18 Escherichia_phage(25.0%) transposase,integrase attL 45099:45158|attR 58385:59206
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage