CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP054780	Klebsiella pneumoniae strain KP20194a chromosome, complete genome	1 crisprs	csa3,RT,cas3,DEDDh,DinG,WYL	12
NZ_CP054783	Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p3, complete sequence	0 crisprs	RT	1
NZ_CP054782	Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p2, complete sequence	0 crisprs	RT	2
NZ_CP054781	Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p1, complete sequence	0 crisprs	RT	3
NZ_CP054785	Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p5, complete sequence	0 crisprs	NA	0
NZ_CP054784	Klebsiella pneumoniae strain KP20194a plasmid pKP20194a-p4, complete sequence	0 crisprs	RT	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1796 : 55954

Escherichia_phage(37.5%)

transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616807.1\|1796_2450_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000557619.1\|2542_2800_+	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_001398199.1\|2732_3134_+	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_001067855.1\|4444_5149_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013188475.1\|5659_6535_+	class A extended-spectrum beta-lactamase CTX-M-65	A0A1B0VBP7	Salmonella_phage	6.8e-152	98.9
WP_013362812.1\|6569_7538_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
WP_001067855.1\|9288_9993_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_174900808.1\|11103_11808_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.5e-138	99.6
WP_000957857.1\|12485_12674_-	hypothetical protein	NA	NA	NA	NA
WP_064441864.1\|12765_13302_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.8e-84	100.0
WP_000027057.1\|13484_14345_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_012372818.1\|14514_15270_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_015059004.1\|15350_15632_-	sodium/hydrogen exchanger	NA	NA	NA	NA
WP_001333089.1\|18364_18646_+	hypothetical protein	NA	NA	NA	NA
WP_000361389.1\|18768_19119_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_000959884.1\|19121_20084_-	plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	4.1e-94	53.9
WP_032146011.1\|20230_20524_+	hypothetical protein	NA	NA	NA	NA
WP_000085883.1\|20600_21284_+	DNA methylase	A0A2I7RE86	Vibrio_phage	5.6e-29	37.4
WP_001104881.1\|21284_21506_+	hypothetical protein	NA	NA	NA	NA
WP_000274503.1\|21519_21954_+	DUF1380 domain-containing protein	NA	NA	NA	NA
WP_001383963.1\|22004_22781_+	hypothetical protein	NA	NA	NA	NA
WP_001198928.1\|23198_23624_+	antirestriction protein	NA	NA	NA	NA
WP_000271762.1\|23670_24093_+	DUF1380 family protein	NA	NA	NA	NA
WP_001027493.1\|24089_24281_+	hypothetical protein	NA	NA	NA	NA
WP_012372796.1\|24594_26262_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.7e-164	53.3
WP_000218642.1\|27661_27892_+	hypothetical protein	NA	NA	NA	NA
WP_000170695.1\|27943_29305_+	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_015059007.1\|29351_29915_+	class I SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	6.1e-21	37.3
WP_000290834.1\|30757_31285_+	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	6.0e-47	74.4
WP_000006003.1\|31342_31576_+	DUF905 family protein	NA	NA	NA	NA
WP_000845953.1\|33728_34163_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_001276217.1\|34159_34879_+	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_001312861.1\|35158_35317_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001272251.1\|36231_36528_+	hypothetical protein	NA	NA	NA	NA
WP_001234445.1\|36638_37460_+	DUF945 domain-containing protein	A0A2C9CYF8	Yersinia_phage	3.4e-44	38.2
WP_015059008.1\|37756_38404_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_000124981.1\|38680_39064_+	relaxosome protein TraM	NA	NA	NA	NA
WP_001067855.1\|39344_40049_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004151610.1\|41682_42585_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_002210513.1\|42846_43608_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002904004.1\|43628_44489_-	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_001138014.1\|44729_47696_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001161490.1\|47699_48260_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_013213990.1\|49802_50081_+	hypothetical protein	NA	NA	NA	NA
WP_013213989.1\|50191_50617_+	antirestriction protein	A0A2D0W8Z5	Bordetella_virus	5.3e-17	37.3
WP_013213988.1\|50744_50900_+	hypothetical protein	NA	NA	NA	NA
WP_013213987.1\|50945_51242_+	transcriptional regulator	NA	NA	NA	NA
WP_004199234.1\|52476_53358_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
WP_013213985.1\|53633_54614_-\|transposase	IS481-like element ISKpn27 family transposase	A8RHK4	Spiroplasma_virus	2.9e-10	27.4
WP_014343468.1\|54736_55210_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	3.3e-76	99.3
WP_001067855.1\|55249_55954_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

93442 : 104601

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118283.1\|93442_94309_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_011977818.1\|95418_96624_+	AAA family ATPase	A0A077SL49	Escherichia_phage	5.3e-163	69.3
WP_011977819.1\|96623_97598_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	1.4e-86	53.8
WP_013214011.1\|97679_98951_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	7.5e-152	63.7
WP_001568036.1\|98950_99382_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.1e-29	53.3
WP_004178082.1\|99788_101276_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152353.1\|101524_102496_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_013214012.1\|102498_103170_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001568040.1\|103232_103463_+	hypothetical protein	NA	NA	NA	NA
WP_001568041.1\|103899_104601_+	DNA methylase	A0A2I7RE86	Vibrio_phage	1.6e-26	36.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054781

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15236 : 41367

Salmonella_phage(50.0%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213558.1\|15236_16166_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	5.6e-72	52.4
WP_004213560.1\|16310_17090_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	89.4
WP_004213562.1\|17086_17908_-	hypothetical protein	NA	NA	NA	NA
WP_014343465.1\|18407_18869_-	hypothetical protein	NA	NA	NA	NA
WP_001261282.1\|18825_19056_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044770.1\|19052_19469_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004206609.1\|19542_21105_+	AAA family ATPase	NA	NA	NA	NA
WP_000361404.1\|21089_22112_+	helicase UvrD	NA	NA	NA	NA
WP_000405672.1\|24737_25172_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004213585.1\|25257_27663_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
WP_000118563.1\|27659_28736_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_004213590.1\|28865_29423_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.6e-48	81.3
WP_004213592.1\|29425_32395_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.3
WP_000427619.1\|32473_33478_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_004213594.1\|33763_34258_+	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|34466_35447_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004225014.1\|35691_36660_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.2e-172	91.3
WP_048333570.1\|36681_37152_-	hypothetical protein	NA	NA	NA	NA
WP_048333569.1\|38695_39139_+	hypothetical protein	NA	NA	NA	NA
WP_040217257.1\|39159_39948_+	hypothetical protein	NA	NA	NA	NA
WP_074428168.1\|40398_41367_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-170	91.0

DBSCAN-SWA_2

81518 : 150120

Escherichia_phage(17.65%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000019473.1\|81518_82499_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004213615.1\|83933_84155_+	hypothetical protein	NA	NA	NA	NA
WP_004213613.1\|84297_85200_-	DMT family transporter	NA	NA	NA	NA
WP_004213611.1\|85272_85824_-	response regulator transcription factor	NA	NA	NA	NA
WP_004213609.1\|86204_86837_-	transcriptional regulator	NA	NA	NA	NA
WP_000019473.1\|87262_88243_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_011251259.1\|88578_89232_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_094818822.1\|91847_92414_-	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_004225014.1\|92525_93494_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.2e-172	91.3
WP_004213252.1\|94193_95021_+	ABC transporter ATP-binding protein	M1HV27	Acanthocystis_turfacea_Chlorella_virus	2.2e-11	28.4
WP_004213250.1\|95042_95999_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004902166.1\|95998_97003_+	iron ABC transporter permease	NA	NA	NA	NA
WP_004902162.1\|98827_100027_-	GTP-binding protein	NA	NA	NA	NA
WP_004902159.1\|100124_100511_+	hypothetical protein	NA	NA	NA	NA
WP_004213915.1\|100747_101065_+	c-type lysozyme inhibitor	NA	NA	NA	NA
WP_004145290.1\|101614_102124_-	peptide deformylase	E3SLL2	Synechococcus_phage	8.8e-19	41.9
WP_004213918.1\|102984_103179_-	hypothetical protein	NA	NA	NA	NA
WP_023302795.1\|103876_105076_-	MFS transporter	NA	NA	NA	NA
WP_004213920.1\|105232_106957_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_004213921.1\|106957_107905_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_004213922.1\|107904_109638_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_004213923.1\|109641_110919_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_004213924.1\|111000_113202_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_004213925.1\|113868_114129_+	DUF1471 domain-containing protein	A0A1B2IE60	Erwinia_phage	1.1e-06	51.0
WP_004213927.1\|114170_114731_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_004902152.1\|114768_115197_+	DUF417 family protein	NA	NA	NA	NA
WP_004213932.1\|115280_115556_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_011251327.1\|115618_116110_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_004213934.1\|116158_117079_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004213072.1\|119869_120313_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_004213073.1\|120309_120540_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_004213075.1\|121147_122281_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_004213076.1\|122296_122590_+	hypothetical protein	NA	NA	NA	NA
WP_004213077.1\|122579_122786_-	hypothetical protein	NA	NA	NA	NA
WP_004213078.1\|123137_123428_+	hypothetical protein	NA	NA	NA	NA
WP_004225022.1\|123417_124317_+	nucleotide-binding protein	NA	NA	NA	NA
WP_004215174.1\|124365_126591_-	exclusion suppressor FxsA	NA	NA	NA	NA
WP_004215173.1\|126592_127495_-	hypothetical protein	NA	NA	NA	NA
WP_004225020.1\|127578_127761_+	hypothetical protein	NA	NA	NA	NA
WP_004215188.1\|127779_128241_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_004215186.1\|128356_129304_+	DMT family transporter	NA	NA	NA	NA
WP_004225018.1\|129639_130635_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.1e-20	28.7
WP_004210218.1\|130840_131854_-	NAD(P)-dependent alcohol dehydrogenase	M1PHA2	Moumouvirus	5.8e-06	26.0
WP_077250518.1\|132507_135465_+\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	2.3e-50	22.8
WP_004144375.1\|136306_137167_+	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.0e-08	21.7
WP_011251321.1\|138898_139534_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_011251320.1\|139870_141112_-	VWA domain-containing protein	A0A2D1GNA9	Pseudoalteromonas_phage	2.2e-10	27.2
WP_000301240.1\|141196_141772_-	tellurium resistance cAMP binding protein TerE	K4JRX3	Caulobacter_phage	9.6e-30	41.6
WP_004026609.1\|141858_142437_-	tellurium resistance membrane protein TerD	K4JRX3	Caulobacter_phage	1.9e-33	40.8
WP_004026607.1\|142475_143516_-	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	1.8e-71	46.5
WP_004026604.1\|143539_143995_-	tellurium resistance membrane protein TerB	NA	NA	NA	NA
WP_011251319.1\|144017_145169_-	tellurium resistance system protein TerA	NA	NA	NA	NA
WP_004196925.1\|145165_145750_-	TerD family protein	K4JRX3	Caulobacter_phage	2.0e-11	29.4
WP_011251317.1\|146060_147119_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_004181731.1\|147130_148273_+	phosphoribosyltransferase domain-containing protein	A0A172Q0Y1	Acinetobacter_phage	3.7e-33	28.5
WP_004181732.1\|148265_149039_+	hypothetical protein	NA	NA	NA	NA
WP_004026596.1\|149040_150120_+\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	1.7e-40	34.1

DBSCAN-SWA_3

186873 : 194302

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004213807.1\|186873_187842_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	7.3e-14	28.8
WP_004902302.1\|188169_189762_-\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_004189161.1\|189792_190143_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_004215130.1\|190139_190580_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	4.4e-19	53.8
WP_094818816.1\|192164_193136_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	7.0e-150	86.9
WP_004211841.1\|193135_194302_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	2.0e-223	97.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP054780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054780_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054780_1

4600452-4600546

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054780_1

>merge|NZ_CP054780|1|4600452-4600546|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP054780|1|1|4600452-4600546|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054780.1\|WP_002888368.1\|4587850_4589560_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP054780.1\|WP_002888345.1\|4598998_4600363_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP054780.1\|WP_002888349.1\|4592081_4594439_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP054780.1\|WP_002888323.1\|4609609_4609987_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP054780.1\|WP_002888329.1\|4606507_4607794_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP054780.1\|WP_002888332.1\|4603033_4603861_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP054780.1\|WP_002888370.1\|4586667_4587513_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP054780.1\|WP_004151368.1\|4594626_4597533_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP054780.1\|WP_002888340.1\|4600687_4602313_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP054780.1\|WP_002888357.1\|4589570_4591073_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP054780.1\|WP_002888353.1\|4591210_4591906_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP054780.1\|WP_004147026.1\|4604104_4606453_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP054780.1\|WP_002888373.1\|4585771_4586539_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP054780.1\|WP_002888327.1\|4607799_4608789_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP054780.1\|WP_002888320.1\|4611095_4611575_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP054780.1\|WP_002888348.1\|4597545_4598205_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP054780.1\|WP_002888324.1\|4608785_4609607_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP054780.1\|WP_002888321.1\|4609991_4610840_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NZ_CP054780.1\|WP_002888337.1\|4602302_4603001_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP054780.1\|WP_002888347.1\|4598279_4598819_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145

Protein	Function_ID	Function_description	E-value
NZ_CP054780.1\|WP_002888368.1\|4587850_4589560_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP054780.1\|WP_002888345.1\|4598998_4600363_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP054780.1\|WP_002888349.1\|4592081_4594439_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP054780.1\|WP_002888323.1\|4609609_4609987_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP054780.1\|WP_002888329.1\|4606507_4607794_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP054780.1\|WP_002888332.1\|4603033_4603861_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP054780.1\|WP_002888370.1\|4586667_4587513_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP054780.1\|WP_004151368.1\|4594626_4597533_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP054780.1\|WP_002888340.1\|4600687_4602313_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP054780.1\|WP_002888357.1\|4589570_4591073_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP054780.1\|WP_002888353.1\|4591210_4591906_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP054780.1\|WP_004147026.1\|4604104_4606453_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP054780.1\|WP_002888373.1\|4585771_4586539_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP054780.1\|WP_002888327.1\|4607799_4608789_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP054780.1\|WP_002888320.1\|4611095_4611575_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP054780.1\|WP_002888348.1\|4597545_4598205_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP054780.1\|WP_002888324.1\|4608785_4609607_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP054780.1\|WP_002888321.1\|4609991_4610840_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP054780.1\|WP_002888337.1\|4602302_4603001_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP054780.1\|WP_002888347.1\|4598279_4598819_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86

>NZ_CP054780.1|WP_002888345.1|4598998_4600363_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP054780.1|WP_002888347.1|4598279_4598819_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP054780.1|WP_002888348.1|4597545_4598205_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP054780.1|WP_004151368.1|4594626_4597533_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP054780.1|WP_002888349.1|4592081_4594439_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP054780.1|WP_002888353.1|4591210_4591906_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP054780.1|WP_002888357.1|4589570_4591073_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP054780.1|WP_002888368.1|4587850_4589560_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP054780.1|WP_002888370.1|4586667_4587513_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP054780.1|WP_002888373.1|4585771_4586539_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP054780.1|WP_002888340.1|4600687_4602313_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP054780.1|WP_002888337.1|4602302_4603001_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP054780.1|WP_002888332.1|4603033_4603861_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP054780.1|WP_004147026.1|4604104_4606453_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP054780.1|WP_002888329.1|4606507_4607794_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP054780.1|WP_002888327.1|4607799_4608789_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP054780.1|WP_002888324.1|4608785_4609607_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP054780.1|WP_002888323.1|4609609_4609987_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP054780.1|WP_002888321.1|4609991_4610840_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP054780.1|WP_002888320.1|4611095_4611575_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

448676 : 528774

uncultured_Caudovirales_phage(57.14%)

portal,protease,tRNA,integrase,tail,transposase,head,terminase,capsid

attL 466284:466301|attR 482279:482296

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|448676_449624_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|449638_450148_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|450276_451401_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|451372_451846_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|451871_452414_+	topoisomerase DNA-binding C4 zinc finger domain-containing protein	NA	NA	NA	NA
WP_002919132.1\|452418_452991_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|452994_453813_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|453809_454067_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|454042_454597_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|460392_460614_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|460907_464018_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|464030_465170_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|465548_466199_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
466284:466301	attL	NA	NA	NA	NA
WP_004150971.1\|466474_467701_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|467793_468735_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|468916_469201_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|469211_469991_+	phage antirepressor KilAC domain-containing protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_106918304.1\|470442_470712_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|470704_470893_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|470885_471200_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|471196_471565_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|471561_471927_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|471926_474062_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|474404_474740_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|474788_475301_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|475564_476731_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|476782_477343_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|477344_478586_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|478582_478918_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|478914_479214_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|479213_479657_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004150957.1\|479649_479802_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_000113647.1\|479932_480289_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|480272_481934_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
WP_004150954.1\|481936_482128_+	hypothetical protein	NA	NA	NA	NA
WP_000462905.1\|482281_482578_-	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
482279:482296	attR	NA	NA	NA	NA
WP_004144972.1\|482602_483568_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_002918745.1\|483925_484807_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_002918742.1\|484818_486270_-	sodium/pantothenate symporter	NA	NA	NA	NA
WP_002918740.1\|486259_486502_-	YhdT family protein	NA	NA	NA	NA
WP_002918738.1\|486612_487962_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_002918736.1\|487972_488440_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_002918732.1\|488462_488915_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_002918689.1\|489138_489747_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_002918688.1\|489746_490748_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_002918687.1\|490976_491168_+	hypothetical protein	NA	NA	NA	NA
WP_002918686.1\|491247_493188_+	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_002918653.1\|493493_494537_+	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_004149974.1\|494607_495600_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002918648.1\|495599_496088_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_002918646.1\|496095_496677_+	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002918644.1\|496679_498149_+	ribonuclease G	NA	NA	NA	NA
WP_004150952.1\|498186_501984_+	AsmA2 domain-containing protein	NA	NA	NA	NA
WP_002918642.1\|502072_503518_+\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_002918641.1\|503553_504483_-	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002918640.1\|504614_504818_+	AaeX family protein	NA	NA	NA	NA
WP_002918639.1\|504825_505758_+	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002918632.1\|505763_507731_+	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002918629.1\|507810_508086_+	barstar family protein	NA	NA	NA	NA
WP_002918627.1\|508136_508403_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918626.1\|508501_508765_-	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918625.1\|509140_509611_-	transcriptional regulator ArgR	NA	NA	NA	NA
WP_002918570.1\|510025_510964_+	malate dehydrogenase	NA	NA	NA	NA
WP_002918568.1\|511100_512159_-	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_062954970.1\|512246_513614_-\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
WP_002918565.1\|513787_514186_-	DUF1043 family protein	NA	NA	NA	NA
WP_004144945.1\|514376_515504_+	cell division protein ZapE	NA	NA	NA	NA
WP_002918559.1\|515769_516198_+	50S ribosomal protein L13	NA	NA	NA	NA
WP_000829818.1\|516213_516606_+	30S ribosomal protein S9	NA	NA	NA	NA
WP_135801240.1\|516663_516948_+	hypothetical protein	NA	NA	NA	NA
WP_002918467.1\|516917_517556_+	stringent starvation protein A	NA	NA	NA	NA
WP_002918465.1\|517559_518054_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8
WP_002918463.1\|518178_518883_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_002918461.1\|518937_520356_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_002918458.1\|520365_524826_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_002918455.1\|525499_526432_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.4e-16	33.8
WP_049118345.1\|526483_527716_-	MFS transporter	NA	NA	NA	NA
WP_000019445.1\|527793_528774_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

DBSCAN-SWA_2

1176773 : 1262106

Salmonella_phage(69.23%)

portal,tRNA,integrase,plate,tail,transposase,head,lysis,terminase,capsid

attL 1190527:1190546|attR 1239207:1239226

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002914765.1\|1176773_1179401_+\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	4.9e-81	38.6
WP_000906486.1\|1179764_1179950_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_002914359.1\|1181471_1181786_+	BON domain-containing protein	NA	NA	NA	NA
WP_002914357.1\|1181911_1182478_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_002914355.1\|1182474_1182903_+	DedA family protein	NA	NA	NA	NA
WP_002914353.1\|1182969_1184526_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_002914351.1\|1184682_1185198_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_002914345.1\|1185250_1186018_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002914344.1\|1185996_1187673_-	2-isopropylmalate synthase	NA	NA	NA	NA
WP_002914342.1\|1187809_1189348_-	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_002914339.1\|1189363_1190536_-	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
1190527:1190546	attL	NA	NA	NA	NA
WP_002914337.1\|1190661_1191192_-	transcriptional repressor MprA	NA	NA	NA	NA
WP_002914335.1\|1191282_1191618_-	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_002914333.1\|1191607_1192354_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_002914330.1\|1192531_1193530_-	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_004151038.1\|1193608_1194676_-	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_002914328.1\|1194668_1195871_-	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	1.2e-26	37.8
WP_002914327.1\|1196227_1197190_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0M4S3B4	Mycobacterium_phage	1.5e-131	72.2
WP_002914325.1\|1197200_1199342_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.5e-184	46.4
WP_002914321.1\|1199314_1199725_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_002914320.1\|1199721_1199967_-	glutaredoxin-like protein NrdH	A0A0M7REK7	Lactobacillus_phage	5.5e-11	41.1
WP_004151037.1\|1200150_1200582_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_004149442.1\|1200670_1202023_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_002914293.1\|1202166_1202514_-	DUF883 domain-containing protein	NA	NA	NA	NA
WP_002914291.1\|1202663_1203026_+	YgaC family protein	NA	NA	NA	NA
WP_002914289.1\|1203111_1203561_-	L-alanine exporter AlaE	NA	NA	NA	NA
WP_004217497.1\|1204271_1204691_+	DNA-binding protein StpA	NA	NA	NA	NA
WP_002914284.1\|1204763_1204943_-	hypothetical protein	NA	NA	NA	NA
WP_002914281.1\|1205148_1206051_+	lipid A hydroxylase LpxO	H8ZJK8	Ostreococcus_tauri_virus	2.6e-37	40.2
WP_002914279.1\|1206031_1206577_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_002914277.1\|1206584_1206884_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002914274.1\|1206959_1207565_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_004145715.1\|1207668_1208577_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004151036.1\|1208659_1210447_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_004151035.1\|1210710_1212231_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000019473.1\|1212962_1213943_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_062955148.1\|1213988_1214987_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	2.2e-183	94.5
WP_004151019.1\|1214989_1215619_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1215741_1215984_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1216016_1216526_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1216533_1216734_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1216697_1217036_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1217103_1217337_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1217336_1217564_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1217560_1218412_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1218408_1220793_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004178082.1\|1221270_1222758_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004151011.1\|1222865_1223054_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1223065_1223299_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1223394_1224078_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1224064_1225144_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1225143_1226145_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1226666_1226936_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1226992_1228036_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1228035_1229799_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1229939_1230773_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1230789_1231842_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1231845_1232499_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1232594_1233059_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1233058_1233262_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1233265_1233481_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1233461_1233971_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1233975_1234359_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1234355_1234784_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_072093160.1\|1234758_1234917_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	9.0e-15	75.0
WP_004150997.1\|1234879_1235302_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1235294_1235741_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1235763_1236630_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1236724_1237297_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1237293_1237656_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1237642_1238551_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1238543_1239215_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1239216_1241166_+	CotH kinase family protein	Q6QI97	Burkholderia_phage	1.0e-06	38.9
1239207:1239226	attR	NA	NA	NA	NA
WP_004200602.1\|1241175_1242294_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1242345_1243419_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1243567_1244740_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1244749_1245265_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1245317_1245617_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1245631_1245751_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_072093161.1\|1245977_1248374_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.1e-107	44.5
WP_004150983.1\|1248370_1248856_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1248852_1249947_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1250013_1250232_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1250259_1250637_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1251240_1251723_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
WP_004188817.1\|1251833_1252310_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1252299_1252590_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1252656_1252998_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914159.1\|1253145_1254807_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1254893_1255772_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1255896_1256487_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1256606_1257893_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1257912_1258704_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1258867_1260232_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1260491_1260740_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1260758_1261307_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1261338_1262106_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1368128 : 1434353

Salmonella_phage(31.48%)

protease,integrase,tail,holin,transposase,terminase

attL 1369123:1369140|attR 1437101:1437118

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|1368128_1369595_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
1369123:1369140	attL	NA	NA	NA	NA
WP_004151979.1\|1369662_1371240_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_060617729.1\|1371432_1372683_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	3.1e-206	85.1
WP_004200579.1\|1372699_1372891_-	hypothetical protein	NA	NA	NA	NA
WP_060617728.1\|1372887_1373658_-	hypothetical protein	D5LH17	Escherichia_phage	2.7e-64	52.0
WP_060617727.1\|1373654_1374248_-	adenine methylase	T1SA14	Salmonella_phage	9.6e-110	91.9
WP_032439437.1\|1374244_1374403_-	DUF1317 family protein	T1SAR0	Salmonella_phage	4.3e-17	78.8
WP_071182196.1\|1374395_1374689_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	3.0e-32	71.1
WP_009485476.1\|1374798_1375047_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	1.0e-28	70.7
WP_124747885.1\|1375095_1375977_-	recombinase RecT	T1SBJ5	Salmonella_phage	2.7e-132	82.6
WP_124747886.1\|1375973_1376795_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A193GYK2	Enterobacter_phage	6.0e-134	82.4
WP_060617724.1\|1376791_1377091_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	1.1e-18	52.5
WP_004164037.1\|1377087_1377237_-	hypothetical protein	G9L6A5	Escherichia_phage	7.9e-13	84.2
WP_060617723.1\|1377465_1378047_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.8e-64	64.3
WP_023285447.1\|1378201_1378435_+	hypothetical protein	T1SAR5	Salmonella_phage	1.2e-23	66.2
WP_004152537.1\|1378581_1378791_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_023285446.1\|1378790_1379558_+	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_032418532.1\|1379554_1380340_+	replication protein	A0A193GYX1	Enterobacter_phage	3.7e-133	87.7
WP_071182195.1\|1380459_1380804_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.3e-53	85.1
WP_071182197.1\|1380996_1381407_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	7.3e-16	55.6
WP_032441402.1\|1381390_1381582_+	hypothetical protein	NA	NA	NA	NA
WP_032441401.1\|1381578_1382223_+	hypothetical protein	Q1MVG0	Enterobacteria_phage	8.0e-110	79.3
WP_157772047.1\|1383208_1383379_+	hypothetical protein	NA	NA	NA	NA
WP_071182194.1\|1383375_1384314_+	DUF551 domain-containing protein	R9TQX3	Aeromonas_phage	6.1e-42	61.8
WP_071182193.1\|1384398_1384704_+	hypothetical protein	Q7Y3Y0	Yersinia_phage	1.7e-14	43.4
WP_071182192.1\|1384696_1385035_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	1.9e-49	88.2
WP_071182168.1\|1385112_1385442_+	hypothetical protein	K7PGV5	Enterobacterial_phage	5.1e-28	56.1
WP_032457429.1\|1385499_1386084_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	5.8e-91	89.1
WP_071182167.1\|1386080_1387556_+\|terminase	terminase	Q858H3	Salmonella_phage	1.3e-280	93.5
WP_004141368.1\|1388291_1388498_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_032441398.1\|1388512_1390195_+\|tail	tail protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	1.5e-264	84.4
WP_004152446.1\|1390191_1390488_+	hypothetical protein	T1SBI9	Salmonella_phage	1.2e-33	70.4
WP_032441397.1\|1390490_1391171_+	peptidase	G9L6C4	Escherichia_phage	6.1e-76	84.0
WP_004200546.1\|1391185_1392172_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_020953461.1\|1392225_1392663_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	1.3e-66	91.7
WP_062955141.1\|1392673_1393015_+	hypothetical protein	G9L6C7	Escherichia_phage	2.4e-36	70.8
WP_004152441.1\|1393065_1393389_+	hypothetical protein	G9L6C8	Escherichia_phage	5.3e-46	85.0
WP_062955139.1\|1393388_1393994_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	4.0e-87	77.0
WP_062955138.1\|1393993_1396471_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.4
WP_004152438.1\|1396470_1396935_+	hypothetical protein	Q858G2	Salmonella_phage	1.5e-70	81.2
WP_032447858.1\|1396934_1397474_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	8.0e-71	80.0
WP_124747888.1\|1397484_1400001_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	81.5
WP_094923803.1\|1399997_1401800_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	1.5e-270	82.0
WP_094923800.1\|1401804_1404279_+	hypothetical protein	T1S9I6	Salmonella_phage	0.0e+00	94.8
WP_032457415.1\|1404474_1404771_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	7.5e-47	92.7
WP_074195329.1\|1404814_1405012_-	type II toxin-antitoxin system HicA family toxin	A0A0M4RCZ9	Salmonella_phage	3.7e-18	63.5
WP_064189924.1\|1405015_1405273_-	DUF1902 domain-containing protein	NA	NA	NA	NA
WP_064152944.1\|1405365_1406055_-	anti-repressor protein	G9L6E2	Escherichia_phage	2.1e-79	65.2
WP_004152432.1\|1406369_1406666_-	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	1.1e-24	64.0
WP_094923797.1\|1409556_1409751_+	hypothetical protein	NA	NA	NA	NA
WP_124747889.1\|1409943_1410348_+	hypothetical protein	A0A0F6R7N0	Escherichia_coli_O157_typing_phage	1.0e-54	82.6
WP_023339240.1\|1410334_1410640_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	81.4
WP_062955009.1\|1410629_1411259_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.8e-90	76.9
WP_062955008.1\|1411255_1411756_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-59	76.9
WP_004152009.1\|1411942_1413811_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_004162150.1\|1413794_1414973_-	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_002913847.1\|1415266_1416499_-	MFS transporter	NA	NA	NA	NA
WP_004221278.1\|1416572_1417484_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004174861.1\|1417580_1417754_-	DUF2633 family protein	G9L6F2	Escherichia_phage	1.4e-16	78.8
WP_002913841.1\|1418124_1420353_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002913839.1\|1420406_1421939_-	exopolyphosphatase	NA	NA	NA	NA
WP_002913838.1\|1421942_1424003_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_004152007.1\|1424183_1424825_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913836.1\|1424821_1425859_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_002913833.1\|1426122_1427016_+	ROK family protein	NA	NA	NA	NA
WP_002913829.1\|1427025_1428459_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913827.1\|1428676_1429303_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913824.1\|1429398_1430685_+	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_020947395.1\|1430783_1431485_+	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913812.1\|1431481_1432393_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_002913810.1\|1432520_1432880_-	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913807.1\|1432889_1434353_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
1437101:1437118	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1746162 : 1753067

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072353998.1\|1746162_1747026_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-10	27.5
WP_094818808.1\|1747036_1747810_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.1e-26	36.7
WP_004151134.1\|1748050_1748947_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_004144192.1\|1749189_1750551_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-207	94.8
WP_004175198.1\|1750869_1751592_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_072353997.1\|1751588_1753067_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.9e-29	28.3

DBSCAN-SWA_5

1797612 : 1808636

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000043543.1\|1797612_1799019_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_004180506.1\|1799245_1800661_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
WP_039819506.1\|1800682_1802053_+	O9 family phosphomannomutase RfbK2	A0A127AWJ1	Bacillus_phage	6.4e-32	25.9
WP_039819536.1\|1802207_1803272_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-105	54.7
WP_023278825.1\|1803285_1804155_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-110	66.7
WP_004175259.1\|1804186_1805077_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_039819508.1\|1805091_1805646_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	58.2
WP_072353991.1\|1805825_1806992_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	9.1e-112	54.7
WP_000019445.1\|1807655_1808636_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

DBSCAN-SWA_6

2798569 : 2809456

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2798569_2801677_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2801731_2802997_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2803027_2804116_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2804202_2804463_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2804760_2805621_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2805641_2806403_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|2806663_2807566_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|2807577_2808843_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|2808835_2809456_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3002726 : 3074491

uncultured_Caudovirales_phage(33.33%)

integrase,plate,transposase,holin,terminase

attL 3065604:3065618|attR 3071613:3071627

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002902268.1\|3002726_3003812_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004151598.1\|3003775_3005530_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004151599.1\|3007201_3010627_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_002902254.1\|3010610_3011750_-	hypothetical protein	NA	NA	NA	NA
WP_002902252.1\|3011746_3012004_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_004151601.1\|3012048_3014466_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_002902180.1\|3014453_3014984_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902178.1\|3015051_3015582_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902176.1\|3015650_3016181_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902174.1\|3016248_3016779_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902172.1\|3016847_3017378_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902169.1\|3017441_3018221_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_004228410.1\|3018221_3020591_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.1e-18	33.8
WP_002902163.1\|3020592_3023247_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.5e-96	33.4
WP_002902160.1\|3023511_3024003_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_004151602.1\|3024007_3025714_-	OmpA family protein	NA	NA	NA	NA
WP_004151603.1\|3025710_3026400_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004218490.1\|3026396_3027740_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002902148.1\|3027749_3029294_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000019473.1\|3029365_3030346_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_002902136.1\|3030941_3031190_+	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	70.4
WP_002902133.1\|3031412_3031697_-	hypothetical protein	NA	NA	NA	NA
WP_002902131.1\|3031801_3032011_-	hypothetical protein	NA	NA	NA	NA
WP_002902128.1\|3032007_3032739_-	hypothetical protein	NA	NA	NA	NA
WP_004218487.1\|3032749_3033478_-	hypothetical protein	NA	NA	NA	NA
WP_004152577.1\|3035828_3036026_-	hypothetical protein	NA	NA	NA	NA
WP_004152576.1\|3036025_3036892_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152575.1\|3036891_3037665_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|3037661_3038858_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3038857_3039211_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3039212_3039866_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152571.1\|3039919_3040486_-	hypothetical protein	NA	NA	NA	NA
WP_004199301.1\|3040528_3040711_-	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3040760_3041102_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3041101_3042124_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004217362.1\|3042126_3042354_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004152567.1\|3042429_3043029_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152566.1\|3043028_3045032_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3045021_3045174_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3045209_3045635_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004199809.1\|3045638_3046079_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152177.1\|3046089_3047235_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3047238_3047679_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3047773_3048160_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3048159_3048666_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3048662_3049082_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3049050_3049332_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3049371_3050313_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3050324_3050819_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3050822_3052025_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3052076_3052625_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3052680_3054132_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3054369_3055770_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004218030.1\|3055720_3056209_-	hypothetical protein	NA	NA	NA	NA
WP_004152170.1\|3056574_3056895_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|3057129_3057519_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3057515_3058046_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3058048_3058297_-\|holin	class II holin family protein	NA	NA	NA	NA
WP_004152167.1\|3058702_3059485_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3059481_3059958_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|3059954_3060917_-	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3060918_3062577_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152162.1\|3063153_3063375_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3063472_3064141_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3064311_3064626_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3064618_3064807_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152158.1\|3064976_3065342_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152157.1\|3065334_3065589_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004177208.1\|3065560_3065779_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
3065604:3065618	attL	NA	NA	NA	NA
WP_004152156.1\|3065775_3066201_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3066197_3066392_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3066388_3067216_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3067320_3067839_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3067844_3068555_+	Rha family transcriptional regulator	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3068544_3068769_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004152150.1\|3068765_3068978_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_014343018.1\|3069220_3069454_+	hypothetical protein	NA	NA	NA	NA
WP_004198245.1\|3069526_3069673_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_004152148.1\|3069632_3069875_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3069855_3071037_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3071233_3071782_+	DJ-1/PfpI family protein	NA	NA	NA	NA
3071613:3071627	attR	NA	NA	NA	NA
WP_004152145.1\|3071980_3073513_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3073729_3074491_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_8

3107424 : 3159113

Enterobacteria_phage(29.41%)

holin,transposase,protease,integrase

attL 3107206:3107221|attR 3134471:3134486

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3107206:3107221	attL	NA	NA	NA	NA
WP_002901815.1\|3107424_3108096_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3108282_3109110_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3109185_3110451_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3110452_3110872_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004178082.1\|3110951_3112439_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_001067855.1\|3114348_3115053_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_062955100.1\|3115089_3115377_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	4.4e-36	95.4
WP_004218565.1\|3115373_3115913_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_024940884.1\|3115909_3116209_-\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_000019473.1\|3116364_3117345_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_022644626.1\|3117887_3118934_-\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
WP_004232548.1\|3119159_3119849_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|3119848_3119989_-	YlcG family protein	NA	NA	NA	NA
WP_004218533.1\|3119985_3120624_-	recombination protein NinG	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|3120616_3121285_-	metallophosphoesterase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|3121281_3121449_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|3121429_3121897_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004243011.1\|3122029_3122308_-	hypothetical protein	NA	NA	NA	NA
WP_004218530.1\|3122417_3123446_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3123653_3123899_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3123954_3124257_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3124253_3125102_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3125098_3125959_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3126044_3126266_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3126306_3126534_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3126645_3127344_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_004201109.1\|3127631_3128708_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3128789_3128993_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004219883.1\|3129303_3129429_+	hypothetical protein	NA	NA	NA	NA
WP_004135674.1\|3129421_3129616_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3129704_3129989_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3130004_3130850_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_088224434.1\|3130846_3131134_+	hypothetical protein	NA	NA	NA	NA
WP_004201102.1\|3131135_3131816_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3131812_3132241_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3132237_3132900_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004151900.1\|3133107_3134325_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	8.6e-121	51.9
WP_004151901.1\|3134471_3135362_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
3134471:3134486	attR	NA	NA	NA	NA
WP_004140266.1\|3135361_3136354_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3136355_3137165_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_004151902.1\|3137209_3138589_-	cytosine permease	NA	NA	NA	NA
WP_004152967.1\|3138836_3139379_+	HutD family protein	NA	NA	NA	NA
WP_004140277.1\|3139577_3140366_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_004151905.1\|3140556_3141714_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_174892460.1\|3141795_3143730_+	exoribonuclease II	A0A2H4UVB7	Bodo_saltans_virus	7.0e-08	24.6
WP_002901786.1\|3143888_3144068_+	hypothetical protein	NA	NA	NA	NA
WP_002901785.1\|3144139_3144889_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002901783.1\|3145164_3145383_+	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA
WP_002901782.1\|3145514_3145841_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_004151907.1\|3145840_3146578_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_002901781.1\|3146769_3147939_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_002901780.1\|3147945_3148254_-	LapA family protein	NA	NA	NA	NA
WP_002901779.1\|3148389_3149157_-	phosphatidylglycerophosphatase B	NA	NA	NA	NA
WP_002901778.1\|3149320_3149923_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-43	49.5
WP_002901777.1\|3149969_3152642_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_002901776.1\|3153030_3153198_-	YmiA family putative membrane protein	NA	NA	NA	NA
WP_002901772.1\|3153443_3154418_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_002901763.1\|3154763_3157361_-	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	2.9e-89	35.6
WP_002901761.1\|3157767_3158019_+	YciN family protein	NA	NA	NA	NA
WP_002901758.1\|3158066_3159113_-\|protease	protease SohB	NA	NA	NA	NA

DBSCAN-SWA_9

3264837 : 3372722

125

Klebsiella_phage(35.44%)

portal,protease,tRNA,integrase,tail,holin,head,terminase,capsid

attL 3291640:3291654|attR 3373062:3373076

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901088.1\|3264837_3265338_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_002901080.1\|3265454_3265901_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_004140469.1\|3265884_3266679_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_014343001.1\|3266786_3267962_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_004140471.1\|3267993_3268686_-	CTP synthase	NA	NA	NA	NA
WP_004150778.1\|3268831_3269341_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_014343000.1\|3269345_3269684_+	DUF488 family protein	NA	NA	NA	NA
WP_004150780.1\|3269673_3269913_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_004150781.1\|3270213_3271227_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150782.1\|3271284_3271386_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_099119317.1\|3271385_3271460_+	protein YoaJ	NA	NA	NA	NA
WP_004140488.1\|3271577_3271703_+	hypothetical protein	NA	NA	NA	NA
WP_004140489.1\|3271762_3272026_-	DUF2534 family protein	NA	NA	NA	NA
WP_004150783.1\|3272156_3272795_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_004148038.1\|3272884_3273799_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-72	50.4
WP_004150784.1\|3274460_3275504_-	type II asparaginase	NA	NA	NA	NA
WP_004150785.1\|3275806_3277015_+	HD domain-containing protein	NA	NA	NA	NA
WP_004150787.1\|3277088_3278873_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_004150788.1\|3278879_3279770_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004140497.1\|3279890_3281399_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_004150789.1\|3281432_3281597_+	hypothetical protein	NA	NA	NA	NA
WP_004150790.1\|3281709_3282396_-	EAL domain-containing protein	NA	NA	NA	NA
WP_004140501.1\|3282793_3282973_-	hypothetical protein	NA	NA	NA	NA
WP_004150791.1\|3283012_3283645_-	DNA-binding protein	NA	NA	NA	NA
WP_004140506.1\|3284211_3284409_+	hypothetical protein	NA	NA	NA	NA
WP_004140509.1\|3284524_3285535_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_004150793.1\|3285531_3286938_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_004140512.1\|3286993_3287881_-	manganese catalase family protein	NA	NA	NA	NA
WP_004140514.1\|3287897_3288404_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150794.1\|3288430_3288925_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3289015_3289201_-	general stress protein	NA	NA	NA	NA
WP_004140529.1\|3289822_3291016_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_004140530.1\|3291128_3291356_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_004225560.1\|3291497_3291674_+	hypothetical protein	NA	NA	NA	NA
3291640:3291654	attL	NA	NA	NA	NA
WP_004150797.1\|3291792_3292116_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_004150798.1\|3292108_3292501_+	amino acid-binding protein	NA	NA	NA	NA
WP_004150799.1\|3292497_3293211_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004892953.1\|3293483_3293636_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_023328083.1\|3293790_3295287_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	1.4e-125	63.7
WP_062955111.1\|3295355_3308060_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	47.1
WP_023328085.1\|3308122_3308716_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	8.0e-80	76.6
WP_047666390.1\|3308742_3309165_-	hypothetical protein	J9Q806	Salmonella_phage	5.9e-29	50.0
WP_047666389.1\|3309206_3309917_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	1.9e-136	90.3
WP_023328087.1\|3309918_3310674_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	4.6e-125	80.5
WP_023328088.1\|3310670_3311009_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-57	88.4
WP_023328089.1\|3311008_3314344_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.3
WP_014228914.1\|3314576_3314942_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_023328090.1\|3314999_3315461_-	hypothetical protein	Q6UAX0	Klebsiella_phage	7.8e-67	83.7
WP_168895379.1\|3315492_3315885_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	7.1e-61	93.8
WP_017880258.1\|3315890_3316280_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_023328092.1\|3316260_3316599_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.8e-53	90.2
WP_020317538.1\|3316595_3316913_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_049010370.1\|3316893_3317154_-	hypothetical protein	Q6UAX5	Klebsiella_phage	7.4e-22	60.5
WP_023328094.1\|3317212_3318499_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	9.8e-216	89.0
WP_014907815.1\|3318576_3319497_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	9.6e-149	88.2
WP_023279520.1\|3319533_3320793_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.8e-222	89.8
WP_017898992.1\|3320792_3320972_-	hypothetical protein	Q6UAX9	Klebsiella_phage	3.1e-11	57.6
WP_021462603.1\|3320965_3322687_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	1.5e-190	57.4
WP_012542168.1\|3322686_3323121_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_014907818.1\|3323369_3323801_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-41	61.6
WP_023297386.1\|3323797_3324121_-	hypothetical protein	NA	NA	NA	NA
WP_032428746.1\|3324072_3324435_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_163621077.1\|3324418_3324709_-	hypothetical protein	NA	NA	NA	NA
WP_094819074.1\|3325352_3325622_-	hypothetical protein	NA	NA	NA	NA
WP_016160650.1\|3326571_3326922_-	hypothetical protein	R9TPM9	Aeromonas_phage	7.9e-11	38.1
WP_032432826.1\|3326918_3327416_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.1e-77	84.6
WP_016160648.1\|3327415_3327631_-\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	2.7e-30	88.7
WP_004147999.1\|3328548_3328698_+	small membrane protein	NA	NA	NA	NA
WP_004147997.1\|3329435_3329639_+	hypothetical protein	NA	NA	NA	NA
WP_025861432.1\|3329882_3330485_-	hypothetical protein	H9C175	Pectobacterium_phage	1.1e-76	68.6
WP_062955112.1\|3330501_3331533_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.7e-96	49.6
WP_025861428.1\|3331732_3332125_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	8.0e-12	36.6
WP_071531363.1\|3332165_3332405_-	hypothetical protein	H6WRY6	Salmonella_phage	1.9e-16	58.6
WP_025368263.1\|3332467_3332701_-	DinI-like family protein	K7PM44	Enterobacteria_phage	3.7e-25	71.1
WP_004178082.1\|3332779_3334267_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_064155591.1\|3334664_3334907_+	DinI family protein	Q6UAW0	Klebsiella_phage	1.6e-31	81.0
WP_031592310.1\|3334906_3335149_+	hypothetical protein	NA	NA	NA	NA
WP_094818792.1\|3335924_3336677_-	hypothetical protein	NA	NA	NA	NA
WP_094818791.1\|3336687_3338856_-	hypothetical protein	B5TAB2	Burkholderia_phage	6.7e-100	45.1
WP_094818790.1\|3338933_3342002_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	66.3
WP_094818789.1\|3341998_3342385_-	nitrite transporter	H2BD94	Pseudomonas_phage	4.0e-16	35.7
WP_038433285.1\|3342392_3342875_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	8.5e-56	67.7
WP_032420722.1\|3342861_3343335_-	hypothetical protein	A0A286S298	Klebsiella_phage	3.9e-53	63.5
WP_094818788.1\|3343334_3346031_-\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	4.9e-201	62.4
WP_032420719.1\|3346011_3346329_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.4e-19	51.5
WP_025714420.1\|3346349_3346745_-\|tail	phage tail protein	M9NZD7	Enterobacteria_phage	1.9e-08	27.5
WP_023304948.1\|3346787_3347270_-	hypothetical protein	M9NYX0	Enterobacteria_phage	5.7e-60	68.6
WP_020804325.1\|3347277_3347676_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	3.2e-40	57.8
WP_048291628.1\|3347672_3348224_-\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	1.6e-53	67.3
WP_020317349.1\|3348213_3348507_-	sugar ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_049186541.1\|3348499_3348826_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	4.0e-33	66.4
WP_094818787.1\|3348906_3350922_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.2
WP_020317329.1\|3350866_3352366_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	1.1e-247	83.6
WP_094818786.1\|3352362_3352578_-	hypothetical protein	A5LH28	Enterobacteria_phage	6.5e-24	75.7
WP_094818785.1\|3352574_3354683_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	83.5
WP_014228567.1\|3354682_3355174_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.4e-67	84.0
WP_072002796.1\|3355494_3355680_-	hypothetical protein	Q8W634	Enterobacteria_phage	2.4e-11	61.1
WP_071606030.1\|3355747_3356125_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004216876.1\|3356234_3356480_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	3.0e-33	96.3
WP_116723292.1\|3356869_3357058_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	6.3e-23	89.8
WP_094818783.1\|3357008_3357284_-	hypothetical protein	G8C7W1	Escherichia_phage	8.6e-13	46.7
WP_094818782.1\|3357280_3357628_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	3.0e-39	78.3
WP_019704505.1\|3357624_3358164_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	5.7e-101	98.3
WP_024176410.1\|3358160_3358460_-\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	4.5e-39	83.8
WP_040210598.1\|3358629_3358869_-	hypothetical protein	NA	NA	NA	NA
WP_094818781.1\|3359019_3359598_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.2e-50	56.7
WP_094818780.1\|3359611_3360592_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.7e-133	67.5
WP_065519871.1\|3360604_3360982_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	3.9e-48	73.6
WP_094818779.1\|3360991_3361801_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	5.9e-110	68.9
WP_094818778.1\|3361797_3362712_-	conserved phage C-terminal domain-containing protein	H2DE83	Erwinia_phage	1.8e-30	60.6
WP_023317571.1\|3362668_3362881_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.2e-16	72.7
WP_004213338.1\|3363118_3363580_-	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_024176406.1\|3363605_3363815_-	cell division protein	NA	NA	NA	NA
WP_019705289.1\|3363909_3364554_+	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.2e-38	40.7
WP_094818777.1\|3364853_3365777_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	1.5e-104	62.9
WP_040186300.1\|3365862_3366162_+	hypothetical protein	K7PJS4	Enterobacterial_phage	1.0e-14	47.8
WP_094818776.1\|3366161_3366947_+	hypothetical protein	A4JX52	Burkholderia_virus	1.3e-61	50.6
WP_094818775.1\|3367074_3367566_+	hypothetical protein	E7C9P6	Salmonella_phage	5.1e-32	53.4
WP_064151808.1\|3367562_3367826_+	DUF4752 family protein	T1S9K2	Salmonella_phage	1.1e-30	78.0
WP_094818774.1\|3367818_3368463_+	hypothetical protein	A0A2R2Z312	Escherichia_phage	1.1e-39	42.8
WP_004141386.1\|3368462_3368675_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_038435237.1\|3369470_3369689_+	hypothetical protein	G8C7S3	Escherichia_phage	3.0e-08	51.7
WP_000089156.1\|3369989_3370226_+	excisionase	NA	NA	NA	NA
WP_000741346.1\|3370215_3371358_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z02	Phage_21	9.1e-173	82.2
WP_094818773.1\|3371471_3372722_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
3373062:3373076	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3591230 : 3684181

Salmonella_phage(58.62%)

portal,protease,tRNA,integrase,plate,tail,head,lysis,terminase,capsid

attL 3646756:3646774|attR 3684256:3684274

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3591230_3592523_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3592613_3593957_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3593965_3594577_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3594699_3598953_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3599088_3599583_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_002898019.1\|3600115_3601084_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3601198_3602965_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3602965_3604687_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3604731_3605433_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3605786_3606005_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3606125_3608405_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3608435_3608753_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3609078_3609300_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3609376_3611317_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3611313_3612429_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3612575_3614234_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3614653_3615349_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3615464_3616364_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3616507_3618160_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3618170_3619139_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3619350_3619785_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3619936_3621655_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3621693_3622695_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3622705_3624148_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3624235_3625249_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3625245_3626076_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3626107_3627247_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3628124_3628640_+	lipoprotein	NA	NA	NA	NA
WP_032419144.1\|3628866_3629595_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3629615_3630347_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3630353_3631070_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3631069_3631738_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3631921_3632653_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3632695_3634168_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3634164_3634881_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3634959_3636087_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3636128_3636617_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3636674_3637520_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3637516_3638470_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3638480_3639614_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3639777_3640890_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3641238_3641718_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3641806_3642709_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3643530_3643818_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3644020_3644284_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3644290_3644674_-	inner membrane protein YbjM	NA	NA	NA	NA
WP_004179131.1\|3644940_3646626_+	aspartate:alanine antiporter	NA	NA	NA	NA
3646756:3646774	attL	NA	NA	NA	NA
WP_000972391.1\|3646845_3647064_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3647155_3648256_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|3648252_3648738_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_014342962.1\|3648734_3651128_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.1e-106	44.0
WP_002896220.1\|3651354_3651474_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3651488_3651788_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3651840_3652356_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3652365_3653538_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3653676_3654753_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|3654782_3654986_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3654982_3655714_-	hypothetical protein	NA	NA	NA	NA
WP_019724930.1\|3655717_3656452_-	hypothetical protein	NA	NA	NA	NA
WP_004150856.1\|3658670_3659270_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3659262_3660171_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_032441567.1\|3660157_3660520_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	4.9e-48	83.9
WP_002896177.1\|3660516_3661089_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004150857.1\|3661183_3661876_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3661872_3662319_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3662311_3662743_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896170.1\|3662705_3662852_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896168.1\|3662838_3663267_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3663263_3663647_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3663651_3664161_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3664141_3664357_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3664360_3664564_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3664563_3665028_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3665123_3665774_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3665777_3666836_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3666852_3667686_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3667828_3669595_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3669594_3670620_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3670681_3672424_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3672699_3673377_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3673491_3673725_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3673735_3673924_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|3674077_3676492_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3676488_3677346_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3677342_3677570_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3677569_3677803_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3677870_3678212_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3678175_3678376_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3678383_3678893_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3678925_3679147_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3679292_3680171_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3680182_3681127_+	hypothetical protein	NA	NA	NA	NA
WP_004178082.1\|3681225_3682713_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_014342959.1\|3683200_3684181_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
3684256:3684274	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4337165 : 4348818

Enterobacteria_phage(70.0%)

integrase

attL 4337615:4337629|attR 4360671:4360685

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004144574.1\|4337165_4338269_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4337615:4337629	attL	NA	NA	NA	NA
WP_002889940.1\|4338279_4339533_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4339885_4341076_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4341063_4342014_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_004152979.1\|4342013_4342439_+	hypothetical protein	NA	NA	NA	NA
WP_004152202.1\|4343006_4343573_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|4343590_4343836_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_062956184.1\|4343832_4344570_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.9e-70	59.4
WP_002889915.1\|4345111_4345378_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4345374_4345932_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4345928_4346156_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4346152_4346473_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4346484_4348818_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4360671:4360685	attR	NA	NA	NA	NA

DBSCAN-SWA_12

4819455 : 4828980

Enterobacteria_phage(85.71%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4819455_4821789_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|4821803_4822124_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4822120_4822348_-	hypothetical protein	NA	NA	NA	NA
WP_004153681.1\|4822344_4822893_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_000556592.1\|4822889_4823156_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004152204.1\|4823716_4824454_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4824450_4824696_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4824713_4825280_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152201.1\|4826020_4827100_+	hypothetical protein	NA	NA	NA	NA
WP_004152200.1\|4827100_4827637_+	hypothetical protein	NA	NA	NA	NA
WP_000019445.1\|4827999_4828980_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.0e-185	99.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP054783

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30100 : 61823

Escherichia_phage(33.33%)

transposase,integrase

attL 34534:34593|attR 47820:48641

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004178082.1\|30100_31588_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_045325066.1\|31665_32091_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	3.7e-31	49.3
WP_108970993.1\|32090_32870_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.7e-69	51.0
WP_053897648.1\|33017_34574_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.1e-83	99.4
34534:34593	attL	NA	NA	NA	NA
WP_001067855.1\|34598_35303_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_094818827.1\|35336_35861_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.2e-31	48.4
WP_000845048.1\|36253_37267_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_004201280.1\|37422_37896_+	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_001067855.1\|38142_38847_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000427619.1\|40743_41748_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|41929_42106_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|42435_43251_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_071881958.1\|43533_43785_-	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|43815_45309_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000743213.1\|45519_45744_-	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|45740_46478_-	recombinase family protein	NA	NA	NA	NA
WP_001044210.1\|46963_47104_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|47109_47814_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_174892462.1\|47893_48394_+	hypothetical protein	NA	NA	NA	NA
WP_001011939.1\|48543_49185_+	type A-2 chloramphenicol O-acetyltransferase CatII	G3CFL0	Escherichia_phage	7.3e-55	45.9
47820:48641	attR	NA	NA	NA	NA
WP_001067855.1\|49328_50033_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000164043.1\|50210_50861_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|50966_52166_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|52197_53082_-	EamA family transporter	NA	NA	NA	NA
WP_001214976.1\|53219_53627_-	cysteine hydrolase	NA	NA	NA	NA
WP_040212993.1\|55373_56477_+	peptidoglycan synthetase FtsI	NA	NA	NA	NA
WP_012477595.1\|56541_57399_+	class A beta-lactamase LAP-2	Q1MVP3	Enterobacteria_phage	2.0e-92	61.1
WP_001516695.1\|58995_59652_+	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_001493761.1\|60431_61823_-\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054782

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP054781

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP054780

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP054783

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection