CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053806	Vibrio cholerae strain SP6G chromosome 1, complete sequence	2 crisprs	cas3,DEDDh,DinG,csx1,csa3	0	1	5	0
NZ_CP053807	Vibrio cholerae strain SP6G chromosome 2, complete sequence	0 crisprs	csa3,cas3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053806_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053806_1

2031899-2032194

Orphan

Consensus_repeat	Method
TGCGGTCGCCGCCGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAAC	PILER-CR

2 spacers

DEDDh

The CRISPR arrays of NZ_CP053806_1

>merge|NZ_CP053806|1|2031899-2032194|PILER-CR
GCCGTCGCTGCGGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAACCGAAAGCGCAGCTCAGCCAGCACAAGCCACGCCAAGCAGTGACGAGGCTGATCCGGAAAAAGCTGCGGTCGCCGACGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAACCAAAAGTACAGCTCAGCCAGCTCAAGCCACGCCAAGCAGTGACGAGGCTGACCCGAAAAAAGCTGCGGTCGCCGCCGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAAC

>NZ_CP053806|1|1|2031899-2032194|PILER-CR
GCCGTCGCTGCGGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAACC	GAAAGCGCAGCTCAGCCAGCACAAGCCACGCCAAGCAGTGACGAGGCTGATCCGGAAAAAGCT
GCGGTCGCCGACGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAACC	AAAAGTACAGCTCAGCCAGCTCAAGCCACGCCAAGCAGTGACGAGGCTGACCCGAAAAAAGCT
GCGGTCGCCGCCGCCATTGCTCGCGCTAAAGCGCGTAAAGCAGAGCAGCAGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053806.1\|WP_019829917.1\|2035674_2036091_+\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|272886
NZ_CP053806.1\|WP_001209531.1\|2023909_2024251_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|366732
NZ_CP053806.1\|WP_000509705.1\|2021163_2021676_-\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715
NZ_CP053806.1\|WP_001057745.1\|2034992_2035634_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|182661
NZ_CP053806.1\|WP_001293888.1\|2034273_2034966_+\|electron-transport-complex-subunit-E	unknown	unknown	gnl\|CDD\|237091
NZ_CP053806.1\|WP_175242081.1\|2020673_2021153_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
NZ_CP053806.1\|WP_001021927.1\|2036252_2036690_+\|DUF2753-domain-containing-protein	unknown	unknown	gnl\|CDD\|287867
NZ_CP053806.1\|WP_000334237.1\|2040124_2041639_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP053806.1\|WP_000104485.1\|2029544_2030132_+\|electron-transport-complex-subunit-RsxB	unknown	unknown	gnl\|CDD\|235347
NZ_CP053806.1\|WP_095490387.1\|2038671_2039997_+\|Na+/H+-antiporter-family-protein	unknown	unknown	gnl\|CDD\|224967
NZ_CP053806.1\|WP_001914672.1\|2026051_2028082_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP053806.1\|WP_000141550.1\|2028963_2029545_+\|electron-transport-complex-subunit-RsxA	unknown	unknown	gnl\|CDD\|235352
NZ_CP053806.1\|WP_000068565.1\|2021735_2022725_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_CP053806.1\|WP_000130224.1\|2037896_2038571_+\|ribonuclease-T	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|179951
NZ_CP053806.1\|WP_000061070.1\|2023030_2023921_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP053806.1\|WP_000863732.1\|2032584_2033631_+\|electron-transport-complex-subunit-RsxD	unknown	unknown	gnl\|CDD\|234844
NZ_CP053806.1\|WP_000954369.1\|2033642_2034272_+\|electron-transport-complex-subunit-RsxG	unknown	unknown	gnl\|CDD\|179350
NZ_CP053806.1\|WP_001888250.1\|2024254_2025622_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP053806.1\|WP_001045948.1\|2036738_2037623_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|375819
NZ_CP053806.1\|WP_000598588.1\|2020431_2020677_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985

Protein	Function_ID	Function_description	E-value
NZ_CP053806.1\|WP_019829917.1\|2035674_2036091_+\|lactoylglutathione-lyase	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	1.82567e-80
NZ_CP053806.1\|WP_001209531.1\|2023909_2024251_-\|Hpt-domain-containing-protein	gnl\|CDD\|366732	pfam01627, Hpt, Hpt domain. The histidine-containing phosphotransfer (HPt) domain is a novel protein module with an active histidine residue that mediates phosphotransfer reactions in the two-component signaling systems. A multistep phosphorelay involving the HPt domain has been suggested for these signaling pathways. The crystal structure of the HPt domain of the anaerobic sensor kinase ArcB has been determined. The domain consists of six alpha helices containing a four-helix bundle-folding. The pattern of sequence similarity of the HPt domains of ArcB and components in other signaling systems can be interpreted in light of the three-dimensional structure and supports the conclusion that the HPt domains have a common structural motif both in prokaryotes and eukaryotes. In S. cerevisiae ypd1p this domain has been shown to contain a binding surface for Ssk1p (response regulator receiver domain containing protein pfam00072).	2.89002e-08
NZ_CP053806.1\|WP_000509705.1\|2021163_2021676_-\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	5.97413e-104
NZ_CP053806.1\|WP_001057745.1\|2034992_2035634_+\|endonuclease-III	gnl\|CDD\|182661	PRK10702, PRK10702, endonuclease III; Provisional.	2.13039e-145
NZ_CP053806.1\|WP_001293888.1\|2034273_2034966_+\|electron-transport-complex-subunit-E	gnl\|CDD\|237091	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional.	3.98478e-134
NZ_CP053806.1\|WP_175242081.1\|2020673_2021153_-\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	6.08648e-105
NZ_CP053806.1\|WP_001021927.1\|2036252_2036690_+\|DUF2753-domain-containing-protein	gnl\|CDD\|287867	pfam10952, DUF2753, Protein of unknown function (DUF2753). This bacterial family of proteins has no known function.	3.52491e-95
NZ_CP053806.1\|WP_000334237.1\|2040124_2041639_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP053806.1\|WP_000104485.1\|2029544_2030132_+\|electron-transport-complex-subunit-RsxB	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	3.6166e-127
NZ_CP053806.1\|WP_095490387.1\|2038671_2039997_+\|Na+/H+-antiporter-family-protein	gnl\|CDD\|224967	COG2056, COG2056, Predicted permease [General function prediction only].	0
NZ_CP053806.1\|WP_001914672.1\|2026051_2028082_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP053806.1\|WP_000141550.1\|2028963_2029545_+\|electron-transport-complex-subunit-RsxA	gnl\|CDD\|235352	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional.	4.22504e-120
NZ_CP053806.1\|WP_000068565.1\|2021735_2022725_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_CP053806.1\|WP_000130224.1\|2037896_2038571_+\|ribonuclease-T	gnl\|CDD\|179951	PRK05168, PRK05168, ribonuclease T; Provisional.	1.46967e-161
NZ_CP053806.1\|WP_000061070.1\|2023030_2023921_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.20109e-151
NZ_CP053806.1\|WP_000863732.1\|2032584_2033631_+\|electron-transport-complex-subunit-RsxD	gnl\|CDD\|234844	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed.	0
NZ_CP053806.1\|WP_000954369.1\|2033642_2034272_+\|electron-transport-complex-subunit-RsxG	gnl\|CDD\|179350	PRK01908, PRK01908, electron transport complex protein RnfG; Validated.	7.08715e-127
NZ_CP053806.1\|WP_001888250.1\|2024254_2025622_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP053806.1\|WP_001045948.1\|2036738_2037623_-\|OmpA-family-protein	gnl\|CDD\|375819	pfam18393, MotY_N, MotY N-terminal domain. The bacterial flagellar motor is a rotary motor complex composed of various proteins. MotX and MotY are essential for the Na+-driven flagellar motor motility of Vibrio, Shewanella and Aeromonas species. MotY is main component for T-ring formation and absence of MotY completely disrupt the T-ring formation. This is the N-terminal domain of MotY which is shown to be essential for motility and responsible for the interaction with both MotX and the basal body. Functional analysis suggests that MotY-N connects the basal body to MotX and that the PomA/PomB complex associates with MotX to form the functional stator complex around the rotor. MotY-N alone does not associate strongly with the basal body, but the partial T-ring structure made of the MotY-N/MotX complex is sufficient to allow at least a few PomA/PomB stator complexes to be incorporated into the motor.	7.14257e-78
NZ_CP053806.1\|WP_000598588.1\|2020431_2020677_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	7.50588e-53

>NZ_CP053806.1|WP_000104485.1|2029544_2030132_+|electron-transport-complex-subunit-RsxB
MSTIVIAVIALAALAAVFGAILGFASIRFKVEADPIVDQIDAILPQTQCGQCGYPGCRPYAEAIANGDAINKCPPGGQATIEKLADLMGVEVQDSAHDLDDKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNKAVHTVIKNECTGCDLCVAPCPTDCIEMIPVQTTPESWKWQLNAIPVVNVTDSAPAAQKSAN
>NZ_CP053806.1|WP_000141550.1|2028963_2029545_+|electron-transport-complex-subunit-RsxA
MTEYLLLLIGTVLVNNFVLVKFLGLCPFMGVSKKLETAIGMGLATTFVLTLASVCAYLVESYVLRPLGIEYLRTMSFILVIAVVVQFTEMVVHKTSPTLYRLLGIFLPLITTNCAVLGVALLNINENHNFIQSIIYGFGAAVGFSLVLILFASMRERIHVADVPAPFKGASIAMITAGLMSLAFMGFTGLVKL
>NZ_CP053806.1|WP_001914672.1|2026051_2028082_-|excinuclease-ABC-subunit-UvrB
MSKAFELVSDYQPAGDQPTAIKQLLEGLEAGLAHQTLLGVTGSGKTFTLANVIATAQRPTIILAPNKTLAAQLYGEMKAFFPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDASVNAHIEQMRLSATKALLERKDAVIVASVSAIYGLGDPDSYLKMMLHLRRGDVINQRDMLRRLAELQYSRNDMAFERGQFRVRGEVIDIFPAESDQEAVRVEMFDDEVECISLFDPLTGVITSRDLARFTIYPKTHYVTPRERILEAIEQIKSELQVRRQYLLDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEGEPPPTLFDYLPHDGLLIIDESHVTVPQIGAMFKGDRSRKETLVEFGFRLPSALDNRPLKFDEFEALAPQTIFVSATPSEYELTKSGGEVAEQVVRPTGLLDPIIEVRPVATQVDDLLSEARIRAANDERILVTTLTKRMAEDLTEYLHEHGVKVRYLHSDIDTVERVEIIRDLRLGIFDVLVGINLLREGLDMPEVALVAILDADKEGFLRSERSLIQTMGRAARNVNGKAILYADSITKSMRKAIDETERRREKQLAYNEQRGITPQPLKRSVKDIMELGDIAKSRKQKNSKVVPLAKVAEESAAYQVLTPQQLEKEISKLEAAMYQHAQNLEFELAAQKRDEIHQLRQQFIANS
>NZ_CP053806.1|WP_001888250.1|2024254_2025622_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLGFMSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER
>NZ_CP053806.1|WP_001209531.1|2023909_2024251_-|Hpt-domain-containing-protein
MREWINQSKIDLLAKEIGEENVPILVNIFLGELNDYQSKLVSDTVADKLGYLKEISHALKSSAASFGADRLCAKAVELDSRAKSGEMMDISLEVEHMLELLKQTHQCYSDLVH
>NZ_CP053806.1|WP_000061070.1|2023030_2023921_+|YvcK-family-protein
MSLYENKKVVAIGGGHGLGRMLAALKVFGSNATGIVTTTDNGGSTGRIRHCQGGIAWGDTRNCINQLITEPSISSMMFEYRFKGAGELNGHNLGNLMLTALDNLSVRPLDAINLIRNMLKVDVNILPMSEHPSDLAALAMDGKWVTGETSVDEMTQDLRRLDLAPEVPATKEAVTAIQDADCVILGPGSFLTSVMPPLLLPELGKAIARNQTAKVIFVENLSPEYGPAGRMSLEQKLEWCERACQGRKIDVVLGHHPHPELEQRWNFVTRDLASANRDWRHDRQKLRQAIEEQLMN
>NZ_CP053806.1|WP_000068565.1|2021735_2022725_-|GTP-3',8-cyclase-MoaA
MAQQFEDRFQRKFYYLRLSITDVCNFKCTYCLPDGYKPSADRPASFLTVNEIRRVVSAFAHCGTSKVRITGGEPSLRKDFGEIIHTIAQTPGIQKVATTTNGYRLAKHIGEWREAGLTQLNVSVDSLDPRMFAQITGENRFQQVMSGIDRAFEVGFEQVKVNVVLMKNLNHLELPKFMAWIKTRPIQLRFIELMQTGEMDALFARHHVSGISIRDYLLGNGWLLKARADNDGPAQVFIHPDFQGEIGLIMPYEKDFCRSCNRLRVSALGKLHLCLFGEQGIELRDLLQDDHQENALIERIQTQLQNKAETHFLHDGNSGVTPHLASIGG
>NZ_CP053806.1|WP_000509705.1|2021163_2021676_-|molybdenum-cofactor-biosynthesis-protein-B
MGHAESKFQAANIAVLTVSDTRTEENDTSGRYLAEQLQEAGHTLADKQIVIDDMYKIRAVVSQWIADETIQAILITGGTGFTSRDSTPEALKPLFDKEVEGFGELFRMVSFEEIGTSTIQSRAVAGFANHTVIFAMPGSTGACRTGWTKIIKQQLDASHRPCNFMPHLTV
>NZ_CP053806.1|WP_175242081.1|2020673_2021153_-|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQLTHINALGEANMVDVSNKADTVREARAEAYVRMAPETLQLILSGQHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEVQLEALLEQNSVRIESLCKLSGKTGVEMEALTAASVAALTIYDMCKAVQKDIVIENVRLLEKSGGKSGHFKVDA
>NZ_CP053806.1|WP_000598588.1|2020431_2020677_-|molybdopterin-synthase-sulfur-carrier-subunit
MIKVLFFAQTRELVECDSLVVDHAFATVEALRQHLAQQPGKWDIALEPGKLLAAVNQSIVPFDTELQDGDEVAFFPPVTGG
>NZ_CP053806.1|WP_000863732.1|2032584_2033631_+|electron-transport-complex-subunit-RsxD
MAFFIASSPHLRSKRSTADVMRWVLACALPGLIAQTYFFGYGTLIQLLLAISVAVALEAGIMLLRKRSPISALRDYSAVVTAWLLAVAIPPLSPWWVVVIGLIFAIVIAKHLYGGLGQNPFNPAMIAYVVLLISFPVQMTSWMAPIKLTAEPSSLVDSFSLIFGGFDSDGLSLQQIRTGIDGITMATPLDAIKTSLKAGHTMSETLTQPQFSGFAGIGWEWVNIAYLLGGLILLKLRIIRWHIPMAMLAGLVFTALLAQLFAPGTTASPMIHLLSGATMLGAFFIATDPVSASTTDKGRLIYGFFIGAMVFLIRSWGGFPDGVAFAVLLANMCVPLIDYYTKPRTYGH
>NZ_CP053806.1|WP_000954369.1|2033642_2034272_+|electron-transport-complex-subunit-RsxG
MLTAIRKNGLILAVFACVSTGLVALTYALTAEQIQQQEQKQLLQVLNQVIPHKYHDNPLAQACTLVNDDKLGTAKTMHAYLAQRDGQPTAIAVETIAPDGYNGEIKLIVGIANNGTVLGVRVLAHQETPGLGDKIDLRISNWVLGFNGQQVTADNQDDWKVRKDGGQFDQFTGATITPRAVVLAVKKAVEYVNQHQQQLHNQPNPCEGQ
>NZ_CP053806.1|WP_001293888.1|2034273_2034966_+|electron-transport-complex-subunit-E
MSENRTLMLNGMWNNNPALVQLLGLCPLLAVSSTVTNALGLGIATLLVLVGSNVTVSLVRDYVPKEVRIPVFVMIIASLVTCVQLLMNAYAYGLYLSLGIFIPLIVTNCIIIGRAEAFASKNDVLPAALDGFWMGLGMTSVLVVLGSLREIIGNGTLFDGADLLLGEWAKVLRIEVFHFDSAFLLALLPPGAFIGVGFLIAAKSVIDKQIAARQPKQQKQAIERARVTNV
>NZ_CP053806.1|WP_001057745.1|2034992_2035634_+|endonuclease-III
MNNAKRIEILERLRANNPKPETELNWNSPFELLIAVLLSAQATDVSVNKATDKLYAVANTPQAMLDLGVDGVKEYIKTIGLFNSKAENVIKTCRILLEKHQGEVPEDREALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVSNRTKFAVGKNVDEVEHKLLKVVPNEFKLDVHHWLILHGRYTCVARKPRCGSCIIEDLCEFKDKVYPES
>NZ_CP053806.1|WP_019829917.1|2035674_2036091_+|lactoylglutathione-lyase
MSNHRILHTMLRVGDLDKSIEFYTQVMGMSLLRKNENTEYKYTLAFLGYGDESQGAVIELTYNWGVADYEKGNAFGHIAIGVDDIYATCDTIKAAGGIVTREPGPVKGGTTHIAFVKDPDGYMIELIQNKQAHAGLEG
>NZ_CP053806.1|WP_001021927.1|2036252_2036690_+|DUF2753-domain-containing-protein
MNIKEWERHTLLADIAMQESDHLRSILHYQQALTVSQQLDESEEIDMEDRMMISVISCHNMAKFWRTMGDNQYELKYLQLASERVLTLIPQCHKPGCEAFVDSLGCCRKALLDFMKRHPNPEIARMVQHIDTASKCEIIAQFRLN
>NZ_CP053806.1|WP_001045948.1|2036738_2037623_-|OmpA-family-protein
MNKWVITSLFAISTLSASVASALEVRYVATPQQSTWQMATNTPLECRLVHPIPNYGDAEFSSRAGKKINLDFELKMRRPMGDTRNVSLVSMPPVWRPGEGADRITNLQFFKQFDGYIGGQTAWSLLSELEKGRYPTFSYQDWQSRDQRIEVALSSVLFQQPYNEFSDCISKLLPYSFEDISFTILHYDQGTSVELNKASQKRLAQIAEYVRYNQDIDLVLVSTYTDSTDTNNNSQNLSEQRAEVLREYFKSIGLPEDRIQVQGYGKRRPIADNASPIGKDKNRRVVISLGRTQV
>NZ_CP053806.1|WP_000130224.1|2037896_2038571_+|ribonuclease-T
MTDKNDALTLKKRFRGYFPVVIDVETAGFNAQTDALLEICAVTLSMDENGDLHPASTIHFHVEPFEGANLEKAALEFTGIYDPFSPLRGAVSEDHALKEIYKLVRKEQKAADCSRAIIVAHNAHFDHSFVMAASERCKLKRVPFHPFATFDTATLSGLAFGQTVLAKACKTAGMEFDNREAHSALYDTQKTAELFCTIVNQWKALGGWPLVNDDEDNNNDADLN
>NZ_CP053806.1|WP_095490387.1|2038671_2039997_+|Na+/H+-antiporter-family-protein
MNPVVISVCVMLLLALMRVNVVVALTFSAVVGGLVAGMSLNETVAAFESGLGGGATIALSYAMLGTFAVAISKSGITDLLAQSVIRRIHGQESHAASTGLKYLVLISLLLMAVASQNVIPVHIAFIPILIPPLLSVFAKLKLDRRLVACVLTFGLITPYMVLPVGFGGIFLNNILLKNLHENGLESITASQVPTAMILPAAGMIFGLLLAVLFSYRKPREYQETKLTVVQQESSSINKQHIAIAGVGIVAALAVQLLTGSMIIGALAGFMVFTFGGVIAWKETHDVFTRGVHMMAMIGFIMISAAGFAAVMKATGGVETLVTSLSTSIGDNKALAALLMLVVGLLVTMGIGSSFSTIPIIATIYVPLCLSFGFSPMATVALVGTAAALGDAGSPASDSTLGPTSGLNADGQHEHIWETVVPTFIHYNLPLIVFGWIAAMVL
>NZ_CP053806.1|WP_000334237.1|2040124_2041639_-|amidophosphoribosyltransferase
MCGIVGIVGTTPVNQSIYDALTVLQHRGQDAAGICTIESNRFRLRKANGLVRDVFEAKHMQRLQGNVGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNANQVRQKLFEKDRRHVNTTSDSEVLLNVLAHEIDTVKGNVTAEDVFRAISNVHRTIRGAYAVAAMIIGHGMIAFRDPHGIRPLCLGKREVNGQLEYMVASESVALDAVGFDFVRDVAPGEAIYATFDGELYTKQCADNPALNPCIFEFVYFARPDSFIDKISVYSARVEMGKRLGERIKNDYSDLDIDVVIPIPETSCDIALQIAQAIDKPYRQGFVKNRYVGRTFIMPGQQQRKKSVRRKLNAIRSEFKDKNVLLVDDSIVRGTTSEQIIEMARDSGAKKVYIVSAAPEIRFPNVYGIDMPSANELIAHGRDNDAICKQIGADALIFQTLEDLVEAVRCGNPDIVKFEASVFNGEYVTGDIDQQYLDFLESMRSDDAKVQREIQQDLANLELHNEGA

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Crispr_ID: NZ_CP053806_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053806_2

2570359-2570602

Orphan

Consensus_repeat	Method
AAAATGTGCCTCCTTAGCTCAGTCGGTAGAGCAACGGACTGATAATCCG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP053806_2

>merge|NZ_CP053806|2|2570359-2570602|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCGCCAGTTCGATTCCGGCAGCCGGCACCACTTAAAATTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAATTGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

>NZ_CP053806|2|2|2570359-2570602|PILER-CR
TGTGCCGGCTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGG	TCGCCAGTTCGATTCCGGCAGCCGGCACCACTTAAAA
TTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTG	TCGGTGGTTCGATTCCGCCTCGAGGCACCACTATTAAAAGTTGTGCCATAGACACAATAAAAAT
TGTTCCTCCTTAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053806.1\|WP_175242133.1\|2564150_2565326_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP053806.1\|WP_000383338.1\|2580157_2580538_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP053806.1\|WP_175242134.1\|2569000_2570128_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP053806.1\|WP_095466455.1\|2580548_2581358_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	unknown	unknown	gnl\|CDD\|234673
NZ_CP053806.1\|WP_001243262.1\|2579270_2580086_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP053806.1\|WP_000005581.1\|2566592_2567312_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP053806.1\|WP_044126943.1\|2563554_2564157_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP053806.1\|WP_175242135.1\|2570891_2572517_+\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP053806.1\|WP_000124738.1\|2568626_2568899_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP053806.1\|WP_114812965.1\|2581507_2582005_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP053806.1\|WP_033933170.1\|2567551_2568613_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP053806.1\|WP_000805059.1\|2565561_2566482_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_CP053806.1\|WP_000780522.1\|2576979_2578275_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP053806.1\|WP_001233674.1\|2563053_2563485_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_CP053806.1\|WP_044126934.1\|2574575_2576927_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP053806.1\|WP_000546924.1\|2573562_2574417_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP053806.1\|WP_095466454.1\|2578264_2579257_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP053806.1\|WP_001087261.1\|2562160_2562718_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_CP053806.1\|WP_000954087.1\|2582017_2582491_-\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|182143
NZ_CP053806.1\|WP_071180105.1\|2562717_2563008_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931

Protein	Function_ID	Function_description	E-value
NZ_CP053806.1\|WP_175242133.1\|2564150_2565326_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP053806.1\|WP_000383338.1\|2580157_2580538_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	1.16069e-74
NZ_CP053806.1\|WP_175242134.1\|2569000_2570128_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	5.01776e-156
NZ_CP053806.1\|WP_095466455.1\|2580548_2581358_+\|symmetrical-bis(5'-nucleosyl)-tetraphosphatase	gnl\|CDD\|234673	PRK00166, apaH, symmetrical bis(5'-nucleosyl)-tetraphosphatase.	2.01556e-169
NZ_CP053806.1\|WP_001243262.1\|2579270_2580086_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.27746e-146
NZ_CP053806.1\|WP_000005581.1\|2566592_2567312_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.57395e-111
NZ_CP053806.1\|WP_044126943.1\|2563554_2564157_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	4.98972e-128
NZ_CP053806.1\|WP_175242135.1\|2570891_2572517_+\|cache-domain-containing-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.94547e-58
NZ_CP053806.1\|WP_000124738.1\|2568626_2568899_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	5.47988e-59
NZ_CP053806.1\|WP_114812965.1\|2581507_2582005_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	9.99264e-91
NZ_CP053806.1\|WP_033933170.1\|2567551_2568613_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP053806.1\|WP_000805059.1\|2565561_2566482_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP053806.1\|WP_000780522.1\|2576979_2578275_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	1.14348e-156
NZ_CP053806.1\|WP_001233674.1\|2563053_2563485_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	6.80534e-67
NZ_CP053806.1\|WP_044126934.1\|2574575_2576927_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP053806.1\|WP_000546924.1\|2573562_2574417_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.60415e-153
NZ_CP053806.1\|WP_095466454.1\|2578264_2579257_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP053806.1\|WP_001087261.1\|2562160_2562718_+\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	2.77868e-12
NZ_CP053806.1\|WP_000954087.1\|2582017_2582491_-\|threonine/serine-exporter-family-protein	gnl\|CDD\|182143	PRK09917, PRK09917, threonine/serine exporter.	7.45224e-67
NZ_CP053806.1\|WP_071180105.1\|2562717_2563008_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	1.32702e-58

>NZ_CP053806.1|WP_175242134.1|2569000_2570128_+|membrane-bound-lytic-murein-transglycosylase-MltC
MRKLVLCITALLLSGCSREFIEKIYDVDYEPTNRFAKNLAELPGQFQKDTAALDALINSFSGNIEKRWGRRELKIAGKNNYVKYIDNYLSRSEVNFTEGRIIVETVSPIAPKAHLRNAIITTLLTPDDPAHVDLFSSKDIELKGQPFLYQQVLDQDGQPIQWSWRANRYADYLIANHLKVKQVDFKKAYYVEIPMVKDQIDIRGYKYASIVRKASRKYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGEPSPEYLFNPENNIDTGTAYFYILKNRYLKEVRHPTSLEYSMISAYNGGTGGVLSTFSSDRQRAMRDLNALQPNQVYWALTKKHPNAEARRYLEKVTKFKKEFNAG
>NZ_CP053806.1|WP_000124738.1|2568626_2568899_+|oxidative-damage-protection-protein
MARTVFCTRLQKEADGLDFQLYPGELGKRIFDNICKEAWAQWQTKQTMLINEKKLNMMDPEHRKLLEQEMVNFLFEGKEVHIEGYTPPAK
>NZ_CP053806.1|WP_033933170.1|2567551_2568613_+|A/G-specific-adenine-glycosylase
MTPFAQAILTWYDAYGRKNLPWQQNKNAYRVWLSEIMLQQTQVATVIPYFERFLERFPTVQALAAAPQDEVLHFWTGLGYYARARNLHKAAKMVVSEYGGEFPTDLEQMNALPGVGRSTAAAVLSSVYKKPHAILDGNVKRTLARCFAVQGWPGQKSVENQLWHYAEMHTPKVDVDKYNQAMMDMGAMICTRSKPKCSLCPVESFCLAKQQGNPQEYPGKKPKTDKPVKATWFVMLYHDNAVWLEQRPQSGIWGGLYCFPQSEIANIQTTIDQRAIGDSTITSQKTLIAFRHTFSHYHLDITPILLQLSRKPDIVMEGSKGLWYNLSQPDEIGLAAPVKQLLHSLPFDIDSHI
>NZ_CP053806.1|WP_000005581.1|2566592_2567312_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVITQEYTEDGKVLRRIRSFVRREGRLTKGQEAAMKECWPTMGIDYQPELLDWQQVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFLGIEVHSPGVGACLASAREAGVTNLRVMCHDAVEVFAHMIPDNSLHTLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLIIGSGVFHMATDWENYAEHMIEVMNQAPGFANLATDGDYIPRPDERPLTKFEQRGHRLGHGVWDIKYQRTA
>NZ_CP053806.1|WP_000805059.1|2565561_2566482_-|glutaminase-B
MKPTAEILASIIEEVRPLTSKGIVADYIPALAKVPSEKLGIAVFTNQGEVITAGDAQEGFSIQSISKVLSLTLAMGLYQPDELWSRVGKEPSGQAFNSLIQLEMEHGIPRNPFINAGAIVVCDMLQSRLSAPRQRLLEFVRQLSGEPLIAYDKVVAASEMMHSDRNAAIAYLMRSFGNFHNEVIPVLHNYFHACALKMSCVELAKTFSYLANKGVSVVTGETVITPTQSKQTNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPALDQSGNSLAGTRALELLAQRIGRSIF
>NZ_CP053806.1|WP_175242133.1|2564150_2565326_+|radical-SAM-family-heme-chaperone-HemW
MLTPPPLSLYIHIPWCVQKCPYCDFNSHAQKGEIPEQEYLDALLQDLDRDIERYQLKGDPRLLHSIFIGGGTPSLISAEGIARLLQGVAERIAFKPEIEITMEANPGTIEAQRFAGYRTAGVTRISIGVQSFEPEKLARLGRIHGQQEAVRAAQLAHKIGLNSFNLDLMHGLPDQTPEQALADLDQAIALNPPHLSWYQLTIEPNTLFYSKPPKLPDEDALWDIFELGHQKLSDAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGAHGKLSFADGRIVRTTKTKHPRGYLAALNNLAKAYLDSEQLVADQDKPFEFFMNRFRLIEPCPKADFTATTGLTIDVIRPTLDWALNEGYLSEDDQHWQITEKGKLFLNDLLEAFMADEEE
>NZ_CP053806.1|WP_044126943.1|2563554_2564157_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLSDFGFDVVAQSEFNVPEAAETGTTFIENAIIKARHAAQITGLPAIADDSGLEVDYLNGAPGIYSARYAGEHASDGDNLNKLLAAMQDVPDEQRSARFHCVLVLMRHADDPTPIVCHGKWEGKILTAPHGSNGFGYDPIFWVPEENCASAELEPVRKKQLSHRGKALQKLFKAIEEQRTC
>NZ_CP053806.1|WP_001233674.1|2563053_2563485_+|DUF4426-domain-containing-protein
MRKWMMSLLLTLLALPASAEQQKTIKDIEVHYSAFNSTFLTPKVASSYQLTRNGYTAILNISVLDRASLGKPATEAKLTGHAKNLIGNLRELSFKQVKEGNAIYYLAEVPISNEEMLTFDIDVDAGLKGAGKLTFSQKFYTEQ
>NZ_CP053806.1|WP_071180105.1|2562717_2563008_+|YggU-family-protein
MAAAWREGDDLLLRLYIQPKASRDSIVGLHGEELKVAITAPPIDGKANAHLSKYLAKLCKVAKGSVVVEKGELGRHKQVRILQPSLIPAEISALIE
>NZ_CP053806.1|WP_001087261.1|2562160_2562718_+|YggT-family-protein
MNSLSFLINTLFDLYIMVVILRIWLQAARADFYNPFSQFIVKATQPVVGPLRRVIPSIGSIDLATIVFAYVLCVLKFMALVLIASSGSVSFSADFLFLGLLSLIKAAGGLLFWVLLIRAILSWVSQGRSPIEYVFHQLTEPMLAPIRRIIPVMGGFDLSILVLFIVLQFANFLMGDVIGPIWYQL
>NZ_CP053806.1|WP_175242135.1|2570891_2572517_+|cache-domain-containing-protein
MKLKTQAYLLSAIILAALLALTATGLWTLRVASNLDNKARVTELFNSAYSILTEVEKLAQEGKMSEPEAKALATRLMRNNLYKDNEYVYVADENMTFVATPLDPQLHDTSFHDFKDGKGNSVGRLIQDVLRHQSGKLVEYTWTQKQADGSIEEKLSIARKTPHWGWVVGTGIGFNEVNAHFWSTAQWQLSLCVVIAVAILSLLLVAIRKILLIIGGEPNEVRSAVQAVAQGRIRREFAIKAPKESIYGAVQQMSSSLADLVAKLEQSMVALRSELAGAGTRAKSIAELTDSQQQSTAMIATAMTEMASSANQVADSARDTAFNTDQADQQSQHTQKLIHNTVSNIQGLATQLQTASTAVADLDLDVKNIAKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQTSTKEIQQMIHNLQEGSRNAIQTIQICGQTSQSSVQESENAASALALIVSALESVSSMSHQIATAAAEQTQVSDDIARRINMIEESGSKLSRVVMESHNSTQTLTKLARELEQWAAHFEVTR
>NZ_CP053806.1|WP_000546924.1|2573562_2574417_-|co-chaperone-DjlA
MHIFGKILGAFFGFLFGGPFGAIFGIFLGHQFDKARRLNQAGFQSGTFGAGPSQAERQEEFFKSAFSVMGHVAKAKGQVTKEEIQLATIMMDRMNLTLEQKRAAQDAFRDGKESDFPLEQVLERVKIATGGRFDLLQFFLELQVSSAFADGDVHPSERQVLHRIARGLGFSSEQLERRLRMQEAAFRFQQGGGFGGSQQQSHSGQQWQQPSSRHQLADAYEVLGVSESASAQEVKRAYRKLMNEHHPDKLMAKGLPPEMMNVAKEKSQQIQHAYELIRKEKGIK
>NZ_CP053806.1|WP_044126934.1|2574575_2576927_+|LPS-assembly-protein-LptD
MSCFSRTFLAASISAALFAPQIQAEASVDDNRAQLPNGEQCLVNQPEPTNPGQQPINVEADKLEAINGQKATYSGNVVVVQGKKRIAADNVTLHQQENVVVAEGNVQFSDGEIKTHSTKATNHLNTDEMTLENTRYQFLCEPGRGEAVYVSKTGKAVYEIEDGSITSCPDGDNAWRMRASSIDVDQNEEIATFYNPRLEVQNVPVFYLPYLTVPIGDTRKTGFLYPTASYGSRNGYSFEVPIYWNLAPQYDLETTFNYMQKRGTQLNSVFRYLTDFGAGQIKSEYLADDQLHTELGDRWAFQYEHNGIFQQAWKFEIDYSKVSDINYFSDLDSGVGNREDGQLIQEGRATYRSDNWDSALLVRDFQLLTKDTTSTNLPYRLMPQLSYNYYAPETMKYLDLDLVSHISRFETDARGKPSATRVHIEPGLKIPFSNTWGNWTTEARVLGTYYQQDLDKTTDAKLEESVTRVIPEIRSVAGIVLERDTVLLDDYTQTLEPKIQYLYVPEKYQDNIGLYDSTLLQTDYYGLFRSRKYSGVDRIESANQVSYGASTRFFDSNYKERLNIAFGQIFYLDSKLNPSNKNPDSTSDKTSYSAWAVEMDFNFADYLFYHGGIQYDIDSQAVQLGNSTLEYRVASGYIQANYRYVAKDYIRNTVGDSITNIDDITRDGISQAGILAGYQLSRKWSASGQYYYDLTTDEALEWLANLTYTSDCWYVGFTYSNQLKSWNGNFVTDPYATPIYENNFSFNIGIIGFGTSIGAGSSMTGVDSAGNSLGYGRPFFLNN
>NZ_CP053806.1|WP_000780522.1|2576979_2578275_+|peptidylprolyl-isomerase-SurA
MKLWKPTLISVLSALTLFNAHAEPKQLDSVAVIVNSGVILQSDVDSALKTIKANAKQNKQPLPQETVLREQVLEKLIIDTLQQQEADRIGVKIDDNRLNEAIKEIAKNNQQTQEQLIASVAQEGLTYPEFREQVRKEMAASDARNALVRRRINILPAEVDTLAELLAQETDATVQYKISHIQLRVDDGQDKSAAETLANKLVNDLRNGADFAQMAYAYSKGPKALQGGDWGWMRKEEMPTIFADQIKMQNKGSIIGPFRSGVGFHILKIDDVKGLETVAVTEVNARHILIKPTIILSDEGAQKQLNEFVQRIKNGEVTFAELAQQYSQDPGSAAQKGELGYQTPDLYVPEFKHQIETLPVGQISEPFKTVHGWHIVEVLDRREVDRTDSALKNKAYRILFNRKFNEEASAWLQELRASAFVEVLKDEKDEQ
>NZ_CP053806.1|WP_095466454.1|2578264_2579257_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MSSKRIIVTAGEPAGIGPDLVLALSAQDWPHQLVVCADKALLAQRAVQLGIQVKLLDYQRDNPVQAQQAGTLLVEHIPLAEPVVAGQLNPANGHYVLKTLERAAKGCMNGEFDAIVTGPVHKGVINRAGVAFSGHTEFFAEQSKTPLVVMMLATEGLRTALVTTHLPLAEVPQAITCERLEQIVHILHKDLVEKFAIAEPKIYVCGLNPHAGEEGVLGMEEIETITPTLQRLREQYGMQLVGPLPADTIFSEKYLQQADAVLGMYHDQVLPVLKYKGFGRSVNITLGLPFIRTSVDHGTALDLAGTGQADAGSFWTALAYAIELVDKKAQ
>NZ_CP053806.1|WP_001243262.1|2579270_2580086_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MRNDVHLGHKARKRFGQNFLNDPYIIDGIVSAINPKPGQNLVEIGPGLGAITEPVGREVDKFTVIELDRDLAERLRNHPELASKLTIHEGDAMRFDFKQLVKPNNKLRVFGNLPYNISTPLMFHLFEFHRDIQDMHFMLQKEVVNRLAAGPGTKAYGRLTVMAQYYCKVVPVLEVPPSAFVPPPKVDSAVVRLVPYEDLPHPATSLEWLDRVVREGFNQRRKTVRNCYKGLAEPETLETLGINPGMRPENLTLAQFVALANWLDATHKTHA
>NZ_CP053806.1|WP_000383338.1|2580157_2580538_+|Co2+/Mg2+-efflux-protein-ApaG
MDVSLPCIKIQVQTRYIEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGVMQGQYLMIDEQGESFTVEIEPFRLAVPHVLN
>NZ_CP053806.1|WP_095466455.1|2580548_2581358_+|symmetrical-bis(5'-nucleosyl)-tetraphosphatase
MANYIVGDIQGCFDELQQLLKQAEFNSQLDTLWFAGDLVARGPKSLETLRFAYQLGDAARVVLGNHDLHLLSVALGHHPAKRRDQTQAILDAPDAAPLLDWLRQQPLLAEHQEFVLCHAGISPQWDLATARQAAQEVESVLRSPEWSTLIEQMYSDQPDAWHPTLQGIDRLRYIVNAFTRMRFCFPDGRLDMQCKLPPQEVTDGSLLPWFQLPQRIALEKTVIFGHWAALEGYVSETVIGLDTGCVWGGTLTMLRWEDKHYFSQAALPA
>NZ_CP053806.1|WP_114812965.1|2581507_2582005_-|type-3-dihydrofolate-reductase
MMISMIAAMADQRIIGKDNQMPWHLPADFAWFKRCTLGKPVVMGRKTYKSIGRPLPGRHNIVISRDVSLQIEGVDVVTSIEAALAKAGEVDEVMIIGGGSLYAACLPMAHKLYITEIHAKLEGDTQFPEWGSDWLERFREHYPADEKNAYGMDFVIFERQYPLPT
>NZ_CP053806.1|WP_000954087.1|2582017_2582491_-|threonine/serine-exporter-family-protein
MLSWDLFFGLLNDMFFAAIPAVGFALVFNVPVPALKYCALGGALGHGSRYLMMHFGVPIEWASFFAATLVGMVGVYWSRRFLAHPKVFTVAALIPMVPGVFAFKAMIALVEINHVGFSPELMEALLENFLKAMFIIAGLAVGLAVPGLLFYRRKPII

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053806_2	2.1\|2570408\|37\|NZ_CP053806\|PILER-CR	2570408-2570444	37	NC_049942	Escherichia phage JLK-2012, complete sequence	23524-23560	4	0.892
NZ_CP053806_2	2.1\|2570408\|37\|NZ_CP053806\|PILER-CR	2570408-2570444	37	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35428-35464	4	0.892

1. spacer 2.1|2570408|37|NZ_CP053806|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
caggtcgccagttcgattccggtagccggcaccatat	Protospacer
.*********************.***********. *

2. spacer 2.1|2570408|37|NZ_CP053806|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

taggtcgccagttcgattccggcagccggcaccactt	CRISPR spacer
taggtcaccagttcgattccggtagccggcaccaatc	Protospacer
******.***************.*********** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

655796 : 662290

Staphylococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210573.1\|655796_656930_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4
WP_171008806.1\|656941_658192_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.2e-98	49.2
WP_000543544.1\|658291_658741_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_095462320.1\|658766_659870_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.0e-43	33.1
WP_001959295.1\|659874_660528_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.9e-32	38.2
WP_001122865.1\|660568_661678_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_001959298.1\|661819_662290_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.9e-34	48.7

DBSCAN-SWA_2

1545117 : 1571110

Vibrio_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000948761.1\|1545117_1545429_+	hypothetical protein	E3U9J1	Vibrio_phage	6.6e-09	100.0
WP_175242012.1\|1545548_1545920_+	phage protein	G8IRV3	Vibrio_phage	1.6e-62	92.7
WP_175242013.1\|1546049_1546496_-	hypothetical protein	NA	NA	NA	NA
WP_175242014.1\|1546498_1546786_-	hypothetical protein	NA	NA	NA	NA
WP_175242015.1\|1547499_1547685_-	hypothetical protein	G8IRV2	Vibrio_phage	1.9e-19	88.5
WP_175242016.1\|1547693_1549061_-	toxin	Q64EV0	Vibrio_phage	3.4e-259	99.3
WP_001160095.1\|1549063_1549408_-	DUF2523 domain-containing protein	Q64EV1	Vibrio_phage	4.8e-61	100.0
WP_175242017.1\|1549407_1550826_-	hypothetical protein	G8IRU9	Vibrio_phage	3.1e-146	70.4
WP_000672170.1\|1550958_1551168_-	hypothetical protein	G8IRU8	Vibrio_phage	1.1e-20	81.2
WP_001896626.1\|1551433_1551796_-	DUF1293 family protein	Q783U4	Vibrio_phage	1.6e-35	61.0
WP_000870098.1\|1551802_1553098_-	replication initiation factor domain-containing protein	R9TNS0	Vibrio_phage	2.5e-171	66.0
WP_000442957.1\|1553094_1553286_-	hypothetical protein	R9TRU0	Vibrio_phage	1.7e-15	63.9
WP_000288489.1\|1553410_1553767_+	hypothetical protein	Q9MCC3	Vibrio_phage	3.7e-32	57.9
WP_175242018.1\|1554077_1567721_-	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	B3Y8K3	Vibrio_virus	8.4e-07	100.0
WP_001881196.1\|1567744_1568206_-	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA
WP_001906284.1\|1568231_1568579_-	hypothetical protein	NA	NA	NA	NA
WP_154401350.1\|1569004_1571110_+	RTX toxin T1SS ABC transporter subunit RtxB	W8CYL7	Bacillus_phage	1.1e-38	26.9

DBSCAN-SWA_3

2270776 : 2277970

Anguillid_herpesvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162850.1\|2270776_2271205_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4
WP_001959105.1\|2271409_2272699_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	6.5e-34	34.0
WP_000872174.1\|2272918_2273113_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_175242115.1\|2273161_2273500_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_175242116.1\|2273513_2275364_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.0e-105	40.9
WP_076008364.1\|2275387_2275903_-	co-chaperone HscB	NA	NA	NA	NA
WP_000301571.1\|2275951_2276275_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_000331703.1\|2276335_2276719_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000775249.1\|2276755_2277970_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	8.8e-33	30.8

DBSCAN-SWA_4

2509552 : 2516777

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001914090.1\|2509552_2510440_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	2.4e-56	41.1
WP_001892042.1\|2510707_2513296_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.2e-33	23.0
WP_000116739.1\|2513389_2514397_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.0e-35	34.2
WP_095461793.1\|2514470_2515406_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	7.8e-05	34.7
WP_057550676.1\|2515405_2516032_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	51.5
WP_000698374.1\|2516024_2516777_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-68	53.3

DBSCAN-SWA_5

2835105 : 2841781

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_175242186.1\|2835105_2836395_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.0e-14	28.6
WP_175242187.1\|2836384_2837197_-	ABC transporter permease	NA	NA	NA	NA
WP_175242188.1\|2837193_2837751_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-53	59.2
WP_175242189.1\|2837750_2838641_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	6.2e-36	34.6
WP_069212354.1\|2838637_2839516_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.4e-110	67.2
WP_069212353.1\|2839539_2840604_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.1e-99	51.9
WP_175242190.1\|2840842_2841781_+	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	2.8e-34	35.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053807

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

908257 : 984659

Vibrio_phage(35.0%)

integrase,holin,transposase,terminase,portal

attL 914967:914989|attR 959388:959410

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_175242377.1\|908257_909333_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-42	37.6
WP_095462559.1\|909307_910288_+\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	1.7e-140	80.5
WP_175242378.1\|910405_911803_-	HAMP domain-containing histidine kinase	A0A2K9L0Z8	Tupanvirus	2.9e-11	30.3
WP_001961306.1\|911786_912461_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.7e-30	33.5
WP_033931945.1\|912626_913124_+	heme-binding protein	NA	NA	NA	NA
914967:914989	attL	NA	NA	NA	NA
WP_000269804.1\|915333_915573_+\|integrase	tyrosine-type recombinase/integrase	R9TMP3	Vibrio_phage	9.4e-32	78.5
WP_175242379.1\|915938_918515_+	AAA family ATPase	NA	NA	NA	NA
WP_000859507.1\|918893_919499_-	short chain dehydrogenase	NA	NA	NA	NA
WP_175242380.1\|919634_920528_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000464289.1\|920767_920923_-	hypothetical protein	R9TPW0	Vibrio_phage	4.4e-22	92.2
WP_000257156.1\|921127_921481_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_001260269.1\|921480_921735_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_175242381.1\|921889_934600_-	PLxRFG domain-containing protein	A0A240F4T3	Ochrobactrum_phage	0.0e+00	29.2
WP_080391399.1\|934914_938139_-	hypothetical protein	NA	NA	NA	NA
WP_113622214.1\|938754_938967_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.4e-15	58.6
WP_113622213.1\|939273_941490_+	ribonuclease R	Q0GXV6	Lactococcus_phage	9.0e-60	32.9
WP_001889101.1\|941573_942551_+\|transposase	IS481-like element ISVch1 family transposase	S5WIU1	Leptospira_phage	8.1e-05	24.5
WP_113622078.1\|942656_944135_-	ATPase	M4MHC7	Vibrio_phage	7.4e-42	36.6
WP_000331793.1\|944134_944395_-	hypothetical protein	NA	NA	NA	NA
WP_000115807.1\|944397_944775_-	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	6.5e-19	45.0
WP_000509008.1\|944778_945429_-	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	1.2e-39	45.2
WP_055064797.1\|945428_945770_-	hypothetical protein	NA	NA	NA	NA
WP_113622077.1\|945810_946173_-	hypothetical protein	NA	NA	NA	NA
WP_113622076.1\|946177_948154_-	DUF1983 domain-containing protein	A0A2L1IV54	Escherichia_phage	6.6e-54	32.7
WP_001885332.1\|948153_949761_-	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	1.1e-128	45.3
WP_113622075.1\|949833_952338_-	right-handed parallel beta-helix repeat-containing protein	A0A240EWW2	Vibrio_phage	8.7e-19	30.9
WP_113622074.1\|952352_952982_-	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	2.5e-23	32.9
WP_113622073.1\|952981_953581_-	hypothetical protein	NA	NA	NA	NA
WP_000149029.1\|953583_954048_-	hypothetical protein	A0A2R2Z354	Escherichia_phage	1.0e-26	48.6
WP_000149719.1\|954105_954486_-	hypothetical protein	M4MCI2	Vibrio_phage	1.8e-08	31.1
WP_000207893.1\|954500_955706_-	DUF4043 family protein	A0A088CC32	Shigella_phage	2.7e-135	58.3
WP_057563526.1\|955768_956773_-	hypothetical protein	A0A1I9KFD1	Aeromonas_phage	1.2e-22	32.6
WP_113622079.1\|956890_957151_-	hypothetical protein	NA	NA	NA	NA
WP_000228310.1\|957162_957741_-	hypothetical protein	A0A1V0E8A2	Vibrio_phage	1.8e-23	36.9
WP_000835319.1\|957743_957965_-	hypothetical protein	NA	NA	NA	NA
WP_001007095.1\|958059_958236_-	hypothetical protein	NA	NA	NA	NA
WP_175242382.1\|958240_958399_-	hypothetical protein	NA	NA	NA	NA
WP_000460725.1\|958408_958927_-	hypothetical protein	Q6VT55	Vibrio_phage	1.0e-59	62.6
WP_001128531.1\|958995_959307_-\|holin	phage holin family protein	R9TR41	Vibrio_phage	2.2e-20	47.4
WP_069217332.1\|959570_963326_-	SIR2 family protein	NA	NA	NA	NA
959388:959410	attR	NA	NA	NA	NA
WP_000457818.1\|963604_964861_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.2e-87	41.9
WP_001263878.1\|964860_965268_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1B1ITQ0	uncultured_Mediterranean_phage	2.5e-24	47.5
WP_069217334.1\|965694_966843_-	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_113622072.1\|967111_968476_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.3e-53	34.2
WP_113622071.1\|968609_968795_-	hypothetical protein	NA	NA	NA	NA
WP_000066466.1\|968960_969173_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	9.6e-20	69.1
WP_113622070.1\|969467_971555_-\|portal	portal protein	A0A088CE71	Shigella_phage	1.5e-202	58.2
WP_113622069.1\|971551_973249_-\|terminase	terminase	B0FEF1	Escherichia_phage	1.8e-217	65.6
WP_080390915.1\|973241_974087_-	hypothetical protein	A0A2R2Z334	Escherichia_phage	1.1e-13	26.4
WP_113622068.1\|974200_975019_-	hypothetical protein	NA	NA	NA	NA
WP_113622067.1\|975082_976051_-	helix-turn-helix domain-containing protein	R9TPU9	Vibrio_phage	4.9e-87	54.3
WP_000532438.1\|976219_976384_-	hypothetical protein	R9TR53	Vibrio_phage	5.5e-07	56.0
WP_000844441.1\|976671_976866_-	hypothetical protein	R9TPV3	Vibrio_phage	6.9e-25	81.2
WP_000196481.1\|976941_977655_+	helix-turn-helix domain-containing protein	R9TNM0	Vibrio_phage	3.7e-116	85.3
WP_102787478.1\|977906_978170_+	hypothetical protein	NA	NA	NA	NA
WP_000083583.1\|978175_978358_+	hypothetical protein	NA	NA	NA	NA
WP_113622066.1\|978339_979566_+	DUF3596 domain-containing protein	R9TMP3	Vibrio_phage	2.5e-189	78.1
WP_057573389.1\|979628_980492_-	DNA adenine methylase	A0A2K9R7J9	Dishui_lake_phycodnavirus	4.3e-18	26.3
WP_057573388.1\|980560_982042_-	hypothetical protein	Q858T2	Yersinia_virus	2.3e-06	31.6
WP_170831666.1\|982431_983457_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	7.7e-22	92.3
WP_000092843.1\|983465_984659_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	1.0e-41	29.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053806

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053807

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection