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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LN908214 Clostridium beijerinckii isolate C. beijerinckii DSM 6423 plasmid II, complete sequence 0 crisprs NA 0 0 0 0
NZ_LN908215 Clostridium beijerinckii isolate C. beijerinckii DSM 6423 plasmid III 0 crisprs NA 0 0 1 0
NZ_LN908213 Clostridium beijerinckii isolate C. beijerinckii DSM 6423 chromosome I 2 crisprs DEDDh,RT,cas3,csa3,DinG,WYL 0 1 19 0

Results visualization

1. NZ_LN908215
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2210 : 13245 13 Bacillus_phage(75.0%) holin,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_LN908213
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN908213_1 3996920-3997494 Orphan NA
8 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LN908213_2 5899690-5899843 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LN908213_2 2.1|5899724|26|NZ_LN908213|CRISPRCasFinder 5899724-5899749 26 NZ_CP030933 Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence 359472-359497 6 0.769

1. spacer 2.1|5899724|26|NZ_LN908213|CRISPRCasFinder matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 6, identity: 0.769

ccgttgtcattgaaccaaccagtttg	CRISPR spacer
ccgttgtcattgaaccaaccgaggaa	Protospacer
********************..   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 377541 : 449099 75 Clostridium_phage(59.26%) integrase,head,tail,capsid,terminase,protease,portal attL 437607:437622|attR 450634:450649
DBSCAN-SWA_2 454224 : 516821 59 Clostridium_phage(46.88%) tail,integrase,capsid,transposase,terminase,portal,coat attL 459758:459773|attR 510901:510916
DBSCAN-SWA_3 526212 : 581796 53 Clostridium_phage(16.67%) transposase,tRNA,coat,protease NA
DBSCAN-SWA_4 1080088 : 1160845 76 Clostridium_phage(67.5%) integrase,head,tail,capsid,terminase,protease,portal,coat attL 1087856:1087873|attR 1156053:1156070
DBSCAN-SWA_5 1314345 : 1324559 7 Cyanophage(28.57%) NA NA
DBSCAN-SWA_6 1946496 : 1998743 65 Clostridium_phage(48.84%) tail,transposase,terminase,plate,portal NA
DBSCAN-SWA_7 2001929 : 2040703 54 Clostridium_phage(27.27%) integrase,tail,capsid,transposase,portal attL 2020886:2020904|attR 2026937:2026955
DBSCAN-SWA_8 2044228 : 2059462 16 Clostridium_phage(72.73%) tail,plate NA
DBSCAN-SWA_9 2287625 : 2322069 47 Clostridium_phage(48.0%) integrase,head,tail,capsid,terminase,plate,portal attL 2290043:2290058|attR 2308477:2308492
DBSCAN-SWA_10 3090227 : 3099586 11 Escherichia_phage(42.86%) NA NA
DBSCAN-SWA_11 3152278 : 3161407 9 Paenibacillus_phage(33.33%) NA NA
DBSCAN-SWA_12 3629162 : 3635746 7 Clostridium_phage(33.33%) NA NA
DBSCAN-SWA_13 3974815 : 3991792 16 Clostridium_phage(30.0%) NA NA
DBSCAN-SWA_14 4189892 : 4281493 89 Clostridium_phage(60.0%) tRNA,tail,transposase,terminase,plate,protease NA
DBSCAN-SWA_15 4510389 : 4543854 34 Planktothrix_phage(37.5%) transposase,integrase attL 4506010:4506026|attR 4553701:4553717
DBSCAN-SWA_16 4567403 : 4577930 12 Clostridium_phage(28.57%) NA NA
DBSCAN-SWA_17 5260303 : 5267771 7 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_18 5465288 : 5545847 56 uncultured_Caudovirales_phage(21.43%) transposase,integrase,protease attL 5483826:5483861|attR 5520696:5520731
DBSCAN-SWA_19 6080869 : 6088998 12 Paenibacillus_phage(25.0%) integrase attL 6075986:6076001|attR 6101039:6101054
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage