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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT009690 Staphylococcus aureus strain NZAK3 chromosome 1 10 crisprs cas3,DEDDh,DinG,csa3,RT,WYL 9 3 10 1
NZ_LT009691 Staphylococcus aureus strain NZAK3 plasmid 2 0 crisprs csa3,RT 0 0 0 0

Results visualization

1. NZ_LT009690
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_1 402144-402245 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_2 764147-764229 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_3 805094-805172 Unclear NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_4 810549-810818 Unclear NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_5 870105-870186 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_6 1663643-1663727 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_7 2100374-2100455 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_8 2229631-2229711 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_9 2241952-2242037 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT009690_10 2349975-2350055 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT009690_3 3.1|805118|31|NZ_LT009690|CRISPRCasFinder 805118-805148 31 NZ_LT009690.1 287073-287103 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 163746-163767 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 163804-163825 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 163862-163883 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 286998-287019 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 287108-287129 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 638680-638701 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 763188-763209 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 870178-870199 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 1393601-1393622 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 1482153-1482174 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 1663719-1663740 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 1678253-1678274 0 1.0
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 1988805-1988826 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 163746-163767 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 163804-163825 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 163862-163883 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 286998-287019 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 287108-287129 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 638680-638701 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 763188-763209 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 870178-870199 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 1393601-1393622 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 1482153-1482174 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 1663719-1663740 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 1678253-1678274 0 1.0
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 1988805-1988826 0 1.0
NZ_LT009690_7 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder 2100398-2100431 34 NZ_LT009690.1 805093-805126 0 1.0
NZ_LT009690_7 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder 2100398-2100431 34 NZ_LT009690.1 1182013-1182046 0 1.0
NZ_LT009690_3 3.1|805118|31|NZ_LT009690|CRISPRCasFinder 805118-805148 31 NZ_LT009690.1 287018-287048 1 0.968
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 984529-984550 1 0.955
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 1697980-1698001 1 0.955
NZ_LT009690_4 4.1|810585|22|NZ_LT009690|CRT 810585-810606 22 NZ_LT009690.1 1698098-1698119 1 0.955
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 163920-163942 1 0.957
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 764138-764160 1 0.957
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 764416-764438 1 0.957
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 1393717-1393739 1 0.957
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 1988863-1988885 1 0.957
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 2339170-2339192 1 0.957
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 984529-984550 1 0.955
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 1697980-1698001 1 0.955
NZ_LT009690_4 4.3|810702|22|NZ_LT009690|CRT 810702-810723 22 NZ_LT009690.1 1698098-1698119 1 0.955
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 163920-163942 1 0.957
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 764138-764160 1 0.957
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 764416-764438 1 0.957
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 1393717-1393739 1 0.957
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 1988863-1988885 1 0.957
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 2339170-2339192 1 0.957
NZ_LT009690_5 5.1|870129|34|NZ_LT009690|CRISPRCasFinder 870129-870162 34 NZ_LT009690.1 1393697-1393730 1 0.971
NZ_LT009690_6 6.1|1663669|33|NZ_LT009690|CRISPRCasFinder 1663669-1663701 33 NZ_LT009690.1 163901-163933 1 0.97
NZ_LT009690_6 6.1|1663669|33|NZ_LT009690|CRISPRCasFinder 1663669-1663701 33 NZ_LT009690.1 1393698-1393730 1 0.97
NZ_LT009690_7 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder 2100398-2100431 34 NZ_LT009690.1 1783551-1783584 1 0.971
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 817837-817867 1 0.968
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 817893-817923 1 0.968
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 1482036-1482058 2 0.913
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 NZ_LT009690.1 2100455-2100477 2 0.913
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 1482036-1482058 2 0.913
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 NZ_LT009690.1 2100455-2100477 2 0.913
NZ_LT009690_7 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder 2100398-2100431 34 NZ_LT009690.1 1398071-1398104 2 0.941
NZ_LT009690_7 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder 2100398-2100431 34 NZ_LT009690.1 2790454-2790487 2 0.941
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 65098-65128 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 363406-363436 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 638735-638765 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 870441-870471 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 1187558-1187588 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 1482089-1482119 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 1482205-1482235 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 1678307-1678337 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 1987457-1987487 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 2339223-2339253 2 0.935
NZ_LT009690_10 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder 2350000-2350030 31 NZ_LT009690.1 2514802-2514832 2 0.935

1. spacer 3.1|805118|31|NZ_LT009690|CRISPRCasFinder matches to position: 287073-287103, mismatch: 0, identity: 1.0

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattgcc	Protospacer
*******************************

2. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 163746-163767, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

3. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 163804-163825, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

4. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 163862-163883, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

5. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 286998-287019, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

6. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 287108-287129, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

7. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 638680-638701, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

8. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 763188-763209, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

9. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 870178-870199, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

10. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 1393601-1393622, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

11. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 1482153-1482174, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

12. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 1663719-1663740, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

13. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 1678253-1678274, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

14. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 1988805-1988826, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

15. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 163746-163767, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

16. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 163804-163825, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

17. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 163862-163883, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

18. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 286998-287019, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

19. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 287108-287129, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

20. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 638680-638701, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

21. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 763188-763209, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

22. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 870178-870199, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

23. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 1393601-1393622, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

24. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 1482153-1482174, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

25. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 1663719-1663740, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

26. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 1678253-1678274, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

27. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 1988805-1988826, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttcgaaa	Protospacer
**********************

28. spacer 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder matches to position: 805093-805126, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

29. spacer 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder matches to position: 1182013-1182046, mismatch: 0, identity: 1.0

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctctgtgttgg	Protospacer
**********************************

30. spacer 3.1|805118|31|NZ_LT009690|CRISPRCasFinder matches to position: 287018-287048, mismatch: 1, identity: 0.968

ctgtgttggggccccgccaacttgcattgcc	CRISPR spacer
ctgtgttggggccccgccaacttgcattacc	Protospacer
****************************.**

31. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 984529-984550, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

32. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 1697980-1698001, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

33. spacer 4.1|810585|22|NZ_LT009690|CRT matches to position: 1698098-1698119, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

34. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 163920-163942, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

35. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 764138-764160, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

36. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 764416-764438, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

37. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 1393717-1393739, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

38. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 1988863-1988885, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

39. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 2339170-2339192, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

40. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 984529-984550, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttcttttagaaa	Protospacer
***************** ****

41. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 1697980-1698001, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

42. spacer 4.3|810702|22|NZ_LT009690|CRT matches to position: 1698098-1698119, mismatch: 1, identity: 0.955

cctgtagaatttcttttcgaaa	CRISPR spacer
cctgtagaatttctttacgaaa	Protospacer
**************** *****

43. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 163920-163942, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

44. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 764138-764160, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

45. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 764416-764438, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

46. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 1393717-1393739, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

47. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 1988863-1988885, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

48. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 2339170-2339192, mismatch: 1, identity: 0.957

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatccaat	Protospacer
**************.********

49. spacer 5.1|870129|34|NZ_LT009690|CRISPRCasFinder matches to position: 1393697-1393730, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

50. spacer 6.1|1663669|33|NZ_LT009690|CRISPRCasFinder matches to position: 163901-163933, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

51. spacer 6.1|1663669|33|NZ_LT009690|CRISPRCasFinder matches to position: 1393698-1393730, mismatch: 1, identity: 0.97

attgggaatccaatttctctgtgttggggccca	CRISPR spacer
attgggaatccaatttctctttgttggggccca	Protospacer
******************** ************

52. spacer 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder matches to position: 1783551-1783584, mismatch: 1, identity: 0.971

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttgtgttgg	Protospacer
*************************.********

53. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 817837-817867, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

54. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 817893-817923, mismatch: 1, identity: 0.968

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgtcagct	Protospacer
***********************.*******

55. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 1482036-1482058, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

56. spacer 4.2|810643|23|NZ_LT009690|CRT matches to position: 2100455-2100477, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

57. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 1482036-1482058, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgtagaaattgggaatacaat	Protospacer
**************.*** ****

58. spacer 4.4|810760|23|NZ_LT009690|CRT matches to position: 2100455-2100477, mismatch: 2, identity: 0.913

tctgtagaaattggaaatccaat	CRISPR spacer
tctgttgaaattgggaatccaat	Protospacer
***** ********.********

59. spacer 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder matches to position: 1398071-1398104, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtggaatttcttatcgaaattctctgtgttgg	Protospacer
****.********* *******************

60. spacer 7.1|2100398|34|NZ_LT009690|CRISPRCasFinder matches to position: 2790454-2790487, mismatch: 2, identity: 0.941

ttgtagaatttcttttcgaaattctctgtgttgg	CRISPR spacer
ttgtagaatttcttttcgaaattctttttgttgg	Protospacer
*************************.* ******

61. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 65098-65128, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

62. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 363406-363436, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

63. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 638735-638765, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

64. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 870441-870471, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

65. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 1187558-1187588, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

66. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 1482089-1482119, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

67. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 1482205-1482235, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

68. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 1678307-1678337, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

69. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 1987457-1987487, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

70. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 2339223-2339253, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgacttttcgtcagct	Protospacer
**********************..*******

71. spacer 10.1|2350000|31|NZ_LT009690|CRISPRCasFinder matches to position: 2514802-2514832, mismatch: 2, identity: 0.935

cacattattgtaagctgactttctgtcagct	CRISPR spacer
cacattattgtaagctgactttccgccagct	Protospacer
***********************.*.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_LT009690_4 4.2|810643|23|NZ_LT009690|CRT 810643-810665 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 AP014226 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS *** 28490-28512 3 0.87
NZ_LT009690_4 4.4|810760|23|NZ_LT009690|CRT 810760-810782 23 AP014225 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS *** 24653-24675 3 0.87
NZ_LT009690_9 9.1|2241978|34|NZ_LT009690|CRISPRCasFinder 2241978-2242011 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_LT009690_9 9.1|2241978|34|NZ_LT009690|CRISPRCasFinder 2241978-2242011 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 4.2|810643|23|NZ_LT009690|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

2. spacer 4.2|810643|23|NZ_LT009690|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

3. spacer 4.4|810760|23|NZ_LT009690|CRT matches to AP014226 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S44-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

4. spacer 4.4|810760|23|NZ_LT009690|CRT matches to AP014225 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C9-MedDCM-OCT-S41-C89, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 3, identity: 0.87

tctgtagaaattggaaatccaat	CRISPR spacer
actgtagaaaatggaaatccaac	Protospacer
 ********* ***********.

5. spacer 9.1|2241978|34|NZ_LT009690|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

6. spacer 9.1|2241978|34|NZ_LT009690|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 742266 : 750087 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 762058 : 776699 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 827663 : 846939 25 Staphylococcus_phage(70.0%) coat,integrase attL 827331:827346|attR 833874:833889
DBSCAN-SWA_4 878451 : 935468 80 Staphylococcus_phage(73.13%) portal,head,integrase,terminase,transposase,holin,plate,capsid,tail attL 874709:874725|attR 901910:901926
DBSCAN-SWA_5 1009985 : 1052287 38 Streptococcus_phage(50.0%) protease,bacteriocin,transposase,tRNA NA
DBSCAN-SWA_6 1086534 : 1095007 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 1713197 : 1722240 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1836268 : 1903375 61 Staphylococcus_phage(95.35%) protease,tRNA NA
DBSCAN-SWA_9 2012836 : 2064528 54 Staphylococcus_phage(72.73%) protease,integrase,tail,holin attL 2024767:2024783|attR 2042511:2042527
DBSCAN-SWA_10 2069298 : 2105338 56 Staphylococcus_phage(94.12%) portal,head,terminase,integrase,protease,capsid,tail attL 2071660:2071677|attR 2096478:2096495
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_LT009690.1|WP_000178987.1|2080162_2080411_-|hypothetical-protein 2080162_2080411_- 82 aa aa NA NA NA 2069298-2105338 yes