CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LN879430	Herbinix luporum strain SD1D chromosome I	1 crisprs	cas3HD,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,PD-DExK,DEDDh,WYL,DinG,csa3	0	7	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LN879430_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LN879430_1

558615-563346

TypeI

I-C

Consensus_repeat	Method
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	PILER-CR
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CRT

70 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_LN879430_1

>merge|NZ_LN879430|1|558615-563346|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCCTTTACGGGTGCGTGGATTGAAATTAAATGCCCTCATAAAAGGCATGTTTCTATATCGTCGTCGCACCCTTTACGGGTGCGTGGATTGAAATCACAATTCAATCTTGCACTCGATACATATACCGTGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAGGTCAAACCCATCTGTATCATTCCAATACCATTGTCGCACCCTTTACGGGTGCGTGGATTGAAATATCTAGTATTGGCTCACCTTGTTTGTCTCTTGCTACGTCGCACCCTTTACGGGTGCGTGGATTGAAATATGTGCTGAAGCAGCTTACCTATCTCTGTCTCATGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAGATGAGATTGTTGCACTTTTACCCATTTGTATACCGTCGCACCCTTTACGGGTGCGTGGATTGAAATCAAAACATTTTATAATATAGTTTTATTGCAGGACAGTCGCACCCTTTACGGGTGCGTGGATTGAAATTGGCATTACGCAAACTATTAACAATGTTAAGGACACTGTCGCACCCTTTACGGGTGCGTGGATTGAAATTTCCATGCTATCCCTCCCAATCCATTCTCTGCCCGTCGCACCCTTTACGGGTGCGTGGATTGAAATTATGGTTAAATGAAATACCAAGAGTACTAAGCAAGGTCGCACCCTTTACGGGTGCGTGGATTGAAATCAAATATCAAAACAAGTGAAATCATTACATTTAATGTCGCACCCTTTACGGGTGCGTGGATTGAAATCCCAGTTTTTTCATAACGTTTTATTGCGTGTAATATGGTCGCACCCTTTACGGGTGCGTGGATTGAAATCAGATATCTTCATGGACTGAAACCGACCGCAAATTGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAGGTCCGCAGATAACACACAGCAGTTTGATGTTAGTCGCACCCTTTACGGGTGCGTGGATTGAAATATACACTTGGGTTGGGTATTAAATATCAGGTTAAAGGTCGCACCCTTTACGGGTGCGTGGATTGAAATATACACTTGGGTTGGGTATTAAATATCAGGTTAAAGCGTCGCACCCTTTACGGGTGCGTGGATTGAAATAAGATATAAAAGAAAAAACCACTGTTAATGCAAGGTCGCACCCTTTACGGGTGCGTGGATTGAAATAAGCAAGTTATATAATATAGGTGAATACCGTTTTAATGTCGCACCCTTTACGGGTGCGTGGATTGAAATATTATTGCTTCTTTACCCACAGCACCAAACCAGGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAGCGGCACAGGCGGTTATAGAAAAAGAACTAAAAGGTCGCACCCTTTACGGGTGCGTGGATTGAAATTTTGATCAAGCCGCCTGTCGTCTCAAAGGTTTTTGTCGCACCCTTTACGGGTGCGTGGATTGAAATCTAGTCGATAGCGAAGTCTTTTTCTGTTGCTTATCGTCGCACCCTTTACGGGTGCGTGGATTGAAATTGTCATCCGCATTATCCATGTGATATAGTAAAAACGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAAGTATTCTTTCTCAGCCTGTTCTTCTTGCGTGTCGCACCCTTTACGGGTGCGTGGATTGAAATTTTTGTTTGTTGGTAGGTTTCATCTTTTCGGTCATGGTCGCACCCTTTACGGGTGCGTGGATTGAAATTGTGATTGAGAACACACGTCAACCTCAAACCCGCCAGGTCGCACCCTTTACGGGTGCGTGGATTGAAATAATCGGTGCAACACCAGATGGCGGTGTTGTCACGTCGCACCCTTTACGGGTGCGTGGATTGAAATATATGTTGCAGGATATTTTTGAAGGTAATCTTTATAGTCGCACCCTTTACGGGTGCGTGGATTGAAATCACAGGCGAATTAGCTATACACCCAGGAAGTATGGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAGGTCCGCAGATAACACACAGCAGTTTGATGTTAGTCGCACCCTTTACGGGTGCGTGGATTGAAATAAGGTGGGGTGACAGCTTACGCCACTGGGGGACTAGGGTCGCACCCTTTACGGGTGCGTGGATTGAAATATCATACCGCCAATAAATTGTTCCATAGAGGTTGCCCCGTCGCACCCTTTACGGGTGCGTGGATTGAAATCGCCTTGTCCACACCTGCTGTTTCAATTCCAACAGTCGCACCCTTTACGGGTGCGTGGATTGAAATAAAATCTGTCAAAATGTCACCAGGCATCATAATGCGGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAATTACTCATTTAAGGTGGATGATAACCTGCATAAGTCGCACCCTTTACGGGTGCGTGGATTGAAATTGCAGTTTTTCAGCAACCAACTGAAAAAATGGGCTGTCGCACCCTTTACGGGTGCGTGGATTGAAATCAGGTTAGCAGTGATGATGTAAAAATATCTATCGAGTCGCACCCTTTACGGGTGCGTGGATTGAAATAGTGAACACGCTTTTGGTAACAGATTTTACCTAGAGTCGCACCCTTTACGGGTGCGTGGATTGAAATAAAAATTTTGTATATTTTACATTAGATTAATTGACAACGTCGCACCCTTTACGGGTGCGTGGATTGAAATCTGACGCCTTTATAAAAACAGAATAAAAAAGAGACCGTCGCACCCTTTACGGGTGCGTGGATTGAAATATCTCTTGGCAAAACCTATAAGAACTCAGTGTACTGGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAAAGGCATTAGCTTTGTACGTGGTATTTTACAATCGTCGCACCCTTTACGGGTGCGTGGATTGAAATCTCTGCCTTGCCTGCCAGTATAAACAATTAAACCGTCGCACCCTTTACGGGTGCGTGGATTGAAATCCGGGGGTCTATTCGCCTGGGTCTAGTCAATCTCCGTCGCACCCTTTACGGGTGCGTGGATTGAAATTTTTTTAACTTAATTATAGGTTTTATTGTTTTTTTGTCGCACCCTTTACGGGTGCGTGGATTGAAATATATTTTTAGTATTTAAGCGTGCACCTGAGATTATGTCGCACCCTTTACGGGTGCGTGGATTGAAATAGTTAGTTGACTCCGGTAAATTTACGGATAAAGGTGTCGCACCCTTTACGGGTGCGTGGATTGAAATATGAGTGTAAGCAGTTTTTCTTGGGATAGTCCGGTCGCACCCTTTACGGGTGCGTGGATTGAAATAAAAAAAGCTTATGCAAGCGAAAAAACAGCGTATGATGGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAGTTGCTTTTGTTGTTCTTCTCTGTAAGCCTTAGTCGCACCCTTTACGGGTGCGTGGATTGAAATATAATTTTAAAAATTATAAACACAATACCAAAACAGTCGCACCCTTTACGGGTGCGTGGATTGAAATAGAAGTTGGTATTGAAAATATTATAAATGAGATACTGTCGCACCCTTTACGGGTGCGTGGATTGAAATAGCAATACTCATAATGTCAGGCAATAGAGTCATGTCGCACCCTTTACGGGTGCGTGGATTGAAATAGTATGAAAAAGATGAATATATCAAAATGTTGGCTGTCGCACCCTTTACGGGTGCGTGGATTGAAATTCCTAGTAGTATGGCATTTAAGCAATCAGGAAGTGGTCGCACCCTTTACGGGTGCGTGGATTGAAATAGCCTGTGTCTGTGCTAGCCTTTTAAGGTTTTCGTTGTCGCACCCTTTACGGGTGCGTGGATTGAAATCCGTCAATGCTGCCAGGCAGAGCGTCCAAAGTCGGGTCGCACCCTTTACGGGTGCGTGGATTGAAATCCAAAAATTTAAAGGACATATATAAATTGTAAATAGTCGCACCCTTTACGGGTGCGTGGATTGAAATTCCGCAGATGTCACATGTTAGCGATACGCCTACGTCGCACCCTTTACGGGTGCGTGGATTGAAATCTGGGTAGCATTACACCGCCGAAGCGGTGCCATCGTCGCACCCTTTACGGGTGCGTGGATTGAAATTATACTGTATATATAATCTAATTAAGTACATGGATGTCGCACCCTTTACGGGTGCGTGGATTGAAATACCCCCTTCAATTTGTTAAGTTCCCGCCTGAGTAGTCGCACCCTTTACGGGTGCGTGGATTGAAATTAATTCTTTTTGCCACATCTTTACTTCTTTGTTAGTCGCACCCTTTACGGGTGCGTGGATTGAAATTTTTTTAATTTTAAATGTTTGTTTTGTTTCTGTAGTCGCACCCTTTACGGGTGCGTGGATTGAAATTTGAAATCCTTGTATGTAGTGAGGAGTTCGGTTAGTCGCACCCTTTACGGGTGCGTGGATTGAAATCGCCTTATCCAAAATTAAATCCTGCTCCTCACCACGTCGCACCCTTTACGGGTGCGTGGATTGAAATCATCTTCTTTTGGTAATCTCTCTGTTACTGGTATCGTCGCACCCTTTACGGGTGCGTGGATTGAAATTCGTGATTACCGGATTGAATAGACAATATTTTATCGTCGCACCCTTTACGGGTGCGTGGATTGAAATTTAGCTATATGCAATAAGAAAAAAGCTGGCTCAGTGTCGCACCCTTTACGGGTGCGTGGATTGAAATTGATGGTGTGTTTAGGTCTAGTTCCGTTTGGAATAGTCGCACCCTTTACGGGTGCGTGGTTTTTTTA

>NZ_LN879430|1|1|558615-563279|PILER-CR
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAATGCCCTCATAAAAGGCATGTTTCTATATCGTC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CACAATTCAATCTTGCACTCGATACATATACCGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCAAACCCATCTGTATCATTCCAATACCATT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCTAGTATTGGCTCACCTTGTTTGTCTCTTGCTAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATGTGCTGAAGCAGCTTACCTATCTCTGTCTCAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGATGAGATTGTTGCACTTTTACCCATTTGTATACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAAAACATTTTATAATATAGTTTTATTGCAGGACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGGCATTACGCAAACTATTAACAATGTTAAGGACACT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTCCATGCTATCCCTCCCAATCCATTCTCTGCCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TATGGTTAAATGAAATACCAAGAGTACTAAGCAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAAATATCAAAACAAGTGAAATCATTACATTTAAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCCAGTTTTTTCATAACGTTTTATTGCGTGTAATATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAGATATCTTCATGGACTGAAACCGACCGCAAATT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAGC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGATATAAAAGAAAAAACCACTGTTAATGCAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGCAAGTTATATAATATAGGTGAATACCGTTTTAAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATTATTGCTTCTTTACCCACAGCACCAAACCAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGCGGCACAGGCGGTTATAGAAAAAGAACTAAAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTGATCAAGCCGCCTGTCGTCTCAAAGGTTTTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTAGTCGATAGCGAAGTCTTTTTCTGTTGCTTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGTCATCCGCATTATCCATGTGATATAGTAAAAAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAGTATTCTTTCTCAGCCTGTTCTTCTTGCGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTGTTTGTTGGTAGGTTTCATCTTTTCGGTCATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGTGATTGAGAACACACGTCAACCTCAAACCCGCCAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AATCGGTGCAACACCAGATGGCGGTGTTGTCAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATATGTTGCAGGATATTTTTGAAGGTAATCTTTATA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CACAGGCGAATTAGCTATACACCCAGGAAGTATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGGTGGGGTGACAGCTTACGCCACTGGGGGACTAGG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCATACCGCCAATAAATTGTTCCATAGAGGTTGCCCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CGCCTTGTCCACACCTGCTGTTTCAATTCCAACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAATCTGTCAAAATGTCACCAGGCATCATAATGCG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAATTACTCATTTAAGGTGGATGATAACCTGCATAA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGCAGTTTTTCAGCAACCAACTGAAAAAATGGGCT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAGGTTAGCAGTGATGATGTAAAAATATCTATCGA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTGAACACGCTTTTGGTAACAGATTTTACCTAGA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAAATTTTGTATATTTTACATTAGATTAATTGACAAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTGACGCCTTTATAAAAACAGAATAAAAAAGAGACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCTCTTGGCAAAACCTATAAGAACTCAGTGTACTG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAAGGCATTAGCTTTGTACGTGGTATTTTACAATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTCTGCCTTGCCTGCCAGTATAAACAATTAAACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCGGGGGTCTATTCGCCTGGGTCTAGTCAATCTCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTTTAACTTAATTATAGGTTTTATTGTTTTTTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATATTTTTAGTATTTAAGCGTGCACCTGAGATTAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTTAGTTGACTCCGGTAAATTTACGGATAAAGGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATGAGTGTAAGCAGTTTTTCTTGGGATAGTCCG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAAAAAGCTTATGCAAGCGAAAAAACAGCGTATGATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGTTGCTTTTGTTGTTCTTCTCTGTAAGCCTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATAATTTTAAAAATTATAAACACAATACCAAAACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGAAGTTGGTATTGAAAATATTATAAATGAGATACT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGCAATACTCATAATGTCAGGCAATAGAGTCAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTATGAAAAAGATGAATATATCAAAATGTTGGCT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCCTAGTAGTATGGCATTTAAGCAATCAGGAAGTG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGCCTGTGTCTGTGCTAGCCTTTTAAGGTTTTCGTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCGTCAATGCTGCCAGGCAGAGCGTCCAAAGTCGG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCAAAAATTTAAAGGACATATATAAATTGTAAATA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCCGCAGATGTCACATGTTAGCGATACGCCTAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTGGGTAGCATTACACCGCCGAAGCGGTGCCATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TATACTGTATATATAATCTAATTAAGTACATGGAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ACCCCCTTCAATTTGTTAAGTTCCCGCCTGAGTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAATTCTTTTTGCCACATCTTTACTTCTTTGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTTTAATTTTAAATGTTTGTTTTGTTTCTGTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTGAAATCCTTGTATGTAGTGAGGAGTTCGGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CGCCTTATCCAAAATTAAATCCTGCTCCTCACCAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CATCTTCTTTTGGTAATCTCTCTGTTACTGGTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCGTGATTACCGGATTGAATAGACAATATTTTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTAGCTATATGCAATAAGAAAAAAGCTGGCTCAGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT

>NZ_LN879430|1|1|558615-563346|CRISPRCasFinder
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAATGCCCTCATAAAAGGCATGTTTCTATATCGTC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CACAATTCAATCTTGCACTCGATACATATACCGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCAAACCCATCTGTATCATTCCAATACCATT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCTAGTATTGGCTCACCTTGTTTGTCTCTTGCTAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATGTGCTGAAGCAGCTTACCTATCTCTGTCTCAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGATGAGATTGTTGCACTTTTACCCATTTGTATACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAAAACATTTTATAATATAGTTTTATTGCAGGACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGGCATTACGCAAACTATTAACAATGTTAAGGACACT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTCCATGCTATCCCTCCCAATCCATTCTCTGCCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TATGGTTAAATGAAATACCAAGAGTACTAAGCAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAAATATCAAAACAAGTGAAATCATTACATTTAAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCCAGTTTTTTCATAACGTTTTATTGCGTGTAATATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAGATATCTTCATGGACTGAAACCGACCGCAAATT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAGC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGATATAAAAGAAAAAACCACTGTTAATGCAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGCAAGTTATATAATATAGGTGAATACCGTTTTAAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATTATTGCTTCTTTACCCACAGCACCAAACCAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGCGGCACAGGCGGTTATAGAAAAAGAACTAAAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTGATCAAGCCGCCTGTCGTCTCAAAGGTTTTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTAGTCGATAGCGAAGTCTTTTTCTGTTGCTTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGTCATCCGCATTATCCATGTGATATAGTAAAAAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAGTATTCTTTCTCAGCCTGTTCTTCTTGCGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTGTTTGTTGGTAGGTTTCATCTTTTCGGTCATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGTGATTGAGAACACACGTCAACCTCAAACCCGCCAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AATCGGTGCAACACCAGATGGCGGTGTTGTCAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATATGTTGCAGGATATTTTTGAAGGTAATCTTTATA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CACAGGCGAATTAGCTATACACCCAGGAAGTATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGGTGGGGTGACAGCTTACGCCACTGGGGGACTAGG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCATACCGCCAATAAATTGTTCCATAGAGGTTGCCCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CGCCTTGTCCACACCTGCTGTTTCAATTCCAACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAATCTGTCAAAATGTCACCAGGCATCATAATGCG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAATTACTCATTTAAGGTGGATGATAACCTGCATAA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGCAGTTTTTCAGCAACCAACTGAAAAAATGGGCT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAGGTTAGCAGTGATGATGTAAAAATATCTATCGA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTGAACACGCTTTTGGTAACAGATTTTACCTAGA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAAATTTTGTATATTTTACATTAGATTAATTGACAAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTGACGCCTTTATAAAAACAGAATAAAAAAGAGACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCTCTTGGCAAAACCTATAAGAACTCAGTGTACTG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAAGGCATTAGCTTTGTACGTGGTATTTTACAATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTCTGCCTTGCCTGCCAGTATAAACAATTAAACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCGGGGGTCTATTCGCCTGGGTCTAGTCAATCTCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTTTAACTTAATTATAGGTTTTATTGTTTTTTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATATTTTTAGTATTTAAGCGTGCACCTGAGATTAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTTAGTTGACTCCGGTAAATTTACGGATAAAGGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATGAGTGTAAGCAGTTTTTCTTGGGATAGTCCG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAAAAAGCTTATGCAAGCGAAAAAACAGCGTATGATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGTTGCTTTTGTTGTTCTTCTCTGTAAGCCTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATAATTTTAAAAATTATAAACACAATACCAAAACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGAAGTTGGTATTGAAAATATTATAAATGAGATACT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGCAATACTCATAATGTCAGGCAATAGAGTCAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTATGAAAAAGATGAATATATCAAAATGTTGGCT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCCTAGTAGTATGGCATTTAAGCAATCAGGAAGTG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGCCTGTGTCTGTGCTAGCCTTTTAAGGTTTTCGTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCGTCAATGCTGCCAGGCAGAGCGTCCAAAGTCGG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCAAAAATTTAAAGGACATATATAAATTGTAAATA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCCGCAGATGTCACATGTTAGCGATACGCCTAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTGGGTAGCATTACACCGCCGAAGCGGTGCCATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TATACTGTATATATAATCTAATTAAGTACATGGAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ACCCCCTTCAATTTGTTAAGTTCCCGCCTGAGTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAATTCTTTTTGCCACATCTTTACTTCTTTGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTTTAATTTTAAATGTTTGTTTTGTTTCTGTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTGAAATCCTTGTATGTAGTGAGGAGTTCGGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CGCCTTATCCAAAATTAAATCCTGCTCCTCACCAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CATCTTCTTTTGGTAATCTCTCTGTTACTGGTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCGTGATTACCGGATTGAATAGACAATATTTTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTAGCTATATGCAATAAGAAAAAAGCTGGCTCAGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGATGGTGTGTTTAGGTCTAGTTCCGTTTGGAATA
GTCGCACCCTTTACGGGTGCGTGGTTTTTTTA

>NZ_LN879430|1|1|558615-563346|CRT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAATGCCCTCATAAAAGGCATGTTTCTATATCGTC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CACAATTCAATCTTGCACTCGATACATATACCGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCAAACCCATCTGTATCATTCCAATACCATT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCTAGTATTGGCTCACCTTGTTTGTCTCTTGCTAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATGTGCTGAAGCAGCTTACCTATCTCTGTCTCAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGATGAGATTGTTGCACTTTTACCCATTTGTATACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAAAACATTTTATAATATAGTTTTATTGCAGGACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGGCATTACGCAAACTATTAACAATGTTAAGGACACT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTCCATGCTATCCCTCCCAATCCATTCTCTGCCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TATGGTTAAATGAAATACCAAGAGTACTAAGCAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAAATATCAAAACAAGTGAAATCATTACATTTAAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCCAGTTTTTTCATAACGTTTTATTGCGTGTAATATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAGATATCTTCATGGACTGAAACCGACCGCAAATT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATACACTTGGGTTGGGTATTAAATATCAGGTTAAAGC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGATATAAAAGAAAAAACCACTGTTAATGCAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGCAAGTTATATAATATAGGTGAATACCGTTTTAAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATTATTGCTTCTTTACCCACAGCACCAAACCAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGCGGCACAGGCGGTTATAGAAAAAGAACTAAAAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTGATCAAGCCGCCTGTCGTCTCAAAGGTTTTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTAGTCGATAGCGAAGTCTTTTTCTGTTGCTTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGTCATCCGCATTATCCATGTGATATAGTAAAAAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAGTATTCTTTCTCAGCCTGTTCTTCTTGCGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTGTTTGTTGGTAGGTTTCATCTTTTCGGTCATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGTGATTGAGAACACACGTCAACCTCAAACCCGCCAG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AATCGGTGCAACACCAGATGGCGGTGTTGTCAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATATGTTGCAGGATATTTTTGAAGGTAATCTTTATA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CACAGGCGAATTAGCTATACACCCAGGAAGTATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGGTCCGCAGATAACACACAGCAGTTTGATGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAGGTGGGGTGACAGCTTACGCCACTGGGGGACTAGG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCATACCGCCAATAAATTGTTCCATAGAGGTTGCCCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CGCCTTGTCCACACCTGCTGTTTCAATTCCAACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAATCTGTCAAAATGTCACCAGGCATCATAATGCG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAATTACTCATTTAAGGTGGATGATAACCTGCATAA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGCAGTTTTTCAGCAACCAACTGAAAAAATGGGCT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CAGGTTAGCAGTGATGATGTAAAAATATCTATCGA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTGAACACGCTTTTGGTAACAGATTTTACCTAGA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAAATTTTGTATATTTTACATTAGATTAATTGACAAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTGACGCCTTTATAAAAACAGAATAAAAAAGAGACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATCTCTTGGCAAAACCTATAAGAACTCAGTGTACTG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAAAGGCATTAGCTTTGTACGTGGTATTTTACAATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTCTGCCTTGCCTGCCAGTATAAACAATTAAACC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCGGGGGTCTATTCGCCTGGGTCTAGTCAATCTCC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTTTAACTTAATTATAGGTTTTATTGTTTTTTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATATTTTTAGTATTTAAGCGTGCACCTGAGATTAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTTAGTTGACTCCGGTAAATTTACGGATAAAGGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATGAGTGTAAGCAGTTTTTCTTGGGATAGTCCG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AAAAAAAGCTTATGCAAGCGAAAAAACAGCGTATGATG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAGTTGCTTTTGTTGTTCTTCTCTGTAAGCCTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ATAATTTTAAAAATTATAAACACAATACCAAAACA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGAAGTTGGTATTGAAAATATTATAAATGAGATACT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGCAATACTCATAATGTCAGGCAATAGAGTCAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGTATGAAAAAGATGAATATATCAAAATGTTGGCT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCCTAGTAGTATGGCATTTAAGCAATCAGGAAGTG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	AGCCTGTGTCTGTGCTAGCCTTTTAAGGTTTTCGTT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCGTCAATGCTGCCAGGCAGAGCGTCCAAAGTCGG
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CCAAAAATTTAAAGGACATATATAAATTGTAAATA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCCGCAGATGTCACATGTTAGCGATACGCCTAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CTGGGTAGCATTACACCGCCGAAGCGGTGCCATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TATACTGTATATATAATCTAATTAAGTACATGGAT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	ACCCCCTTCAATTTGTTAAGTTCCCGCCTGAGTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TAATTCTTTTTGCCACATCTTTACTTCTTTGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTTTTTAATTTTAAATGTTTGTTTTGTTTCTGTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTGAAATCCTTGTATGTAGTGAGGAGTTCGGTTA
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CGCCTTATCCAAAATTAAATCCTGCTCCTCACCAC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	CATCTTCTTTTGGTAATCTCTCTGTTACTGGTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TCGTGATTACCGGATTGAATAGACAATATTTTATC
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TTAGCTATATGCAATAAGAAAAAAGCTGGCTCAGT
GTCGCACCCTTTACGGGTGCGTGGATTGAAAT	TGATGGTGTGTTTAGGTCTAGTTCCGTTTGGAATA
GTCGCACCCTTTACGGGTGCGTGGTTTTTTTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LN879430.1\|WP_087758732.1\|565784_566897_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LN879430.1\|WP_087758730.1\|548907_549030_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LN879430.1\|WP_058257497.1\|571705_572266_-\|folate-family-ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|275311
NZ_LN879430.1\|WP_058257494.1\|568107_568854_+\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350623
NZ_LN879430.1\|WP_058257491.1\|565096_565798_+\|VanR-ABDEGLN-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LN879430.1\|WP_058257487.1\|553649_555620_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_LN879430.1\|WP_157893087.1\|573858_574029_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|259816
NZ_LN879430.1\|WP_058257483.1\|549162_549525_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN879430.1\|WP_058257484.1\|549645_550173_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LN879430.1\|WP_058257493.1\|567058_568111_+\|D-alanine--D-serine-ligase-VanG	unknown	unknown	gnl\|CDD\|234993
NZ_LN879430.1\|WP_058257485.1\|550340_552896_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_LN879430.1\|WP_058259173.1\|558165_558456_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LN879430.1\|WP_058257486.1\|552909_553653_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_LN879430.1\|WP_058257488.1\|555619_556480_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_LN879430.1\|WP_058257496.1\|571172_571697_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LN879430.1\|WP_058257495.1\|568858_571012_+\|serine-racemase-VanT-catalytic-subunit	unknown	unknown	gnl\|CDD\|143498
NZ_LN879430.1\|WP_058257489.1\|556466_557126_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_LN879430.1\|WP_058257498.1\|572615_573683_+\|DUF362-domain-containing-protein	unknown	unknown	gnl\|CDD\|377193
NZ_LN879430.1\|WP_058259174.1\|563407_564817_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_LN879430.1\|WP_058257490.1\|557122_558154_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360

Protein	Function_ID	Function_description	E-value
NZ_LN879430.1\|WP_087758732.1\|565784_566897_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.91051e-47
NZ_LN879430.1\|WP_087758730.1\|548907_549030_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	1.23468e-19
NZ_LN879430.1\|WP_058257497.1\|571705_572266_-\|folate-family-ECF-transporter-S-component	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	1.53798e-26
NZ_LN879430.1\|WP_058257494.1\|568107_568854_+\|M15-family-metallopeptidase	gnl\|CDD\|350623	cd14849, DD-dipeptidase_VanXYc, D-Ala-D-Ala dipeptidase/D-Ala-D-Ala carboxypeptidase (VanXYc) and related proteins. VanXYc peptidase (also known as vanXY(C) peptidase, D-alanyl-D-alanine carboxypeptidase D,D-dipeptidase/D,D-carboxypeptidase, vancomycin resistance D,D-dipeptidase) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci. Some of the vancomycin resistance operons encode VanXY D,D-carboxypeptidase which hydrolyzes both, dipeptide (D-Ala-D-Ala) or pentapeptide (UDP-MurNac-L-Ala-D-Glu-L-Lys-D-Ala-D-Ala). It is a bifunctional enzyme that catalyzes D,D-peptidase and D,D-carboxypeptidase activities. VanXY has higher sequence similarity to VanY than with VanX and hydrolyzes D,D-dipeptides such as D-Ala-D-Ala, whereas VanY is inactive against this substrate; thus having a less restrictive active site to accommodate larger substrates such as UDP-MurNAc-pentapeptide[Ala]. This family belongs to the MEROPS family M15, subfamily B, and includes the D,D-dipeptidases VanXYg and VanXYe.	3.86798e-73
NZ_LN879430.1\|WP_058257491.1\|565096_565798_+\|VanR-ABDEGLN-family-response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.94014e-88
NZ_LN879430.1\|WP_058257487.1\|553649_555620_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	1.12476e-99
NZ_LN879430.1\|WP_157893087.1\|573858_574029_+\|hypothetical-protein	gnl\|CDD\|259816	cd13438, SPFH_eoslipins_u2, Uncharacterized prokaryotic subgroup of the stomatin-like proteins (slipins) family; belonging to the SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model summarizes a subgroup of the stomatin-like protein family (SLPs or slipins) that is found in bacteria. The conserved domain common to the SPFH superfamily has also been referred to as the Band 7 domain. Individual proteins of the SPFH superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Bacterial SLPs remain uncharacterized.	8.25796e-16
NZ_LN879430.1\|WP_058257484.1\|549645_550173_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	9.02856e-54
NZ_LN879430.1\|WP_058257493.1\|567058_568111_+\|D-alanine--D-serine-ligase-VanG	gnl\|CDD\|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	7.93e-132
NZ_LN879430.1\|WP_058257485.1\|550340_552896_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.75515e-43
NZ_LN879430.1\|WP_058259173.1\|558165_558456_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.91907e-31
NZ_LN879430.1\|WP_058257486.1\|552909_553653_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	3.89361e-74
NZ_LN879430.1\|WP_058257488.1\|555619_556480_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	3.9398e-118
NZ_LN879430.1\|WP_058257495.1\|568858_571012_+\|serine-racemase-VanT-catalytic-subunit	gnl\|CDD\|143498	cd06825, PLPDE_III_VanT, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, VanT and similar proteins. This subfamily is composed of Enterococcus gallinarum VanT and similar proteins. VanT is a membrane-bound serine racemase (EC 5.1.1.18) that is essential for vancomycin resistance in Enterococcus gallinarum. It converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. The C-terminal region of this protein contains a PLP-binding TIM-barrel domain followed by beta-sandwich domain, which is homologous to the fold type III PLP-dependent enzyme, bacterial alanine racemase (AR). AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. On the basis of this similarity, it has been suggested that dimer formation of VanT is required for its catalytic activity, and that it catalyzes the racemization of serine in a mechanistically similar manner to that of alanine by bacterial AR. Some biochemical evidence indicates that VanT also exhibits alanine racemase activity and plays a role in the racemization of L-alanine. VanT contains a unique N-terminal transmembrane domain, which may function as an L-serine transporter. VanT serine racemases are not related to eukaryotic serine racemases, which are fold type II PLP-dependent enzymes.	0
NZ_LN879430.1\|WP_058257489.1\|556466_557126_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	1.66411e-27
NZ_LN879430.1\|WP_058257498.1\|572615_573683_+\|DUF362-domain-containing-protein	gnl\|CDD\|377193	pfam04015, DUF362, Domain of unknown function (DUF362). Domain that is sometimes present in iron-sulphur proteins.	2.45307e-63
NZ_LN879430.1\|WP_058259174.1\|563407_564817_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	0.00110729
NZ_LN879430.1\|WP_058257490.1\|557122_558154_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0

>NZ_LN879430.1|WP_058259173.1|558165_558456_+|CRISPR-associated-endonuclease-Cas2
MYILITYDINTTSLNGQARLRKVAKVCINYGQRVQNSVFECKVNEAQYRELQHKLLKIIDKNVDSLRFYRLGENYDKKVKHIGAKQTYKVDDPMIL
>NZ_LN879430.1|WP_058257490.1|557122_558154_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYITRPNAYLSLNGENIVIKEDNQTIGRYPLHNIESIVLFSNLGMSPQLMGKCVDNHISICFLTPNGRFRARVVGRSYGNVLLRKKQYKVSMDDAECVKISINFILGKIYNQKWLIERYIREYPLRIQGELLKNISYQLTEYMNCVKTCTELDSLRGFEGKAQVCYFQGFNELILNQKKEFVFNGRNKRPPQDPVNSLLSFAYTLLSNDIASALETVGLDSYVGFMHQDRPGRISLALDLIEELRAPIADRFVLSLINRQQVKFEDFIINDNGAVLIKDEARKKILSEWQKRKQEKLKHPFLDEKIPWGLVPYAQSMLLARYLRGDLNEYPPFFWK
>NZ_LN879430.1|WP_058257489.1|556466_557126_+|CRISPR-associated-protein-Cas4
MKEYKEDDYLLISGIQHFIFCKRQWALIHVEQQWEENFFTMDGILLHERADDGSIKESRKDLVTIHALPVKSKSLCVTGKCDVVELRLSSEGIYLPKYNNTYKVYPVEYKRGKPKEDESDILQLLAQAICLEEMLMTKIEKAYMFYFEIRRRQEVIFTEAMRKRLYDIVTEMHYYMDKGITPKVRTGKKCRTCSLNNICMPGLNEEKNVTLYIQRRINE
>NZ_LN879430.1|WP_058257488.1|555619_556480_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MGKLENKIDFVMFFTVDHANPNGDPLNGNMPRNDYDGFGEISDVCIKRKIRNRLQDAGEKIFVQSNDRIEDDLKSLEARFNNVFKKGKDDDETVFTQSCELWIDVRSFGQVVTFQNRSIGIRGPVSISMAKSLSPVNIISMQITRSTNGMIKAEGGKSSDTMGTKHYVDFGVYKIKGSINPYFAEKTGFTIEDAEKIKEALRTLFVNDASSARPEGSMEVKSIYWFTHPGKLGVASSAKIHNLVKDQLKEGVIKPTTYDDYVIKLNEIELSKYKEKGLKVEVIEGI
>NZ_LN879430.1|WP_058257487.1|553649_555620_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSGLKVLYDTYNIALDANLVDRSENIEEETILLPLYHSNKKSDGKDIIQITLSTKGEFIKADWVPKDKYIIFPVTERSIARSNGYAPHPLCDELSYLTKEINSEKHKLYIKEIKSWKDYMVQGNINITFEAIYNYIIKETILDDVIKEIFGVNDYSIDDKNVVHYMDENQKVKEWKPEKIFITFLIEHRDAFHKNLSVTTDRQLHNNYISYVRSLNMDNDKKYCNISKEFTYCVKSHRGIMGNAKLISISNNKETYYGRFSTGDEVISIGYETSQKIHLMLKYFLENKNNSRWIGENSYLINWFSDDISNSNGLQLTGGITTYDDEDLDLEEYEDESISLGGNTSKNLNNYLTGRDRFIPPESKFYVMIIDKISNGRVSIKYFRELYRSDLYKRVEAWYHSTKWGFYSARQKEIVQQSPSIYTIADYILGTETEEKNRTTVVCNNKKMRVKTIERLIPCIIDGKKIPLDLVNRMFNNLCKRSSYGKTWSSIVQVGCSLLKKYKLDYKLKDEVKEMLEENNKDRSYLYGRLLAIYEKLEADTLYSGTNEVGNRSTNAERLWTAYTKTPARTLMILEEKIRPYKERLQKGKPSSYIYYERLIGKIINDLSGNENFDNEKNNPLNEDFVFGYYAQKQDLYKKKSEDKKDEVLENMKEVY
>NZ_LN879430.1|WP_058257486.1|552909_553653_+|type-I-C-CRISPR-associated-protein-Cas5
MSEKFRSSPFYYRLFGDYALFTDPVTKGGGEKFTYQIPTYQALKGITEQIYWKPTIQYYVDAVKVLQPIQTETKGVVAFLKNGKKDLNYYTYLKNVDYLVKVHFEWNELRHELAYDRNEKKHEQIFLRSLERGGRRDIFLGARECFGYVEKINENEFINAITPFEGKQISFGIMFHSFVYPDEAYNEDTANNLTSNFTNIAMNNGIINFIRPEECEIQQQLRNYSIKMFDSDSMKDVGEEWEEVMNQ
>NZ_LN879430.1|WP_058257485.1|550340_552896_+|CRISPR-associated-helicase/endonuclease-Cas3
MFFDVLARKEENELGEVKSQSLTEHLLSVGKIASQIGDLIGIKHLMMHVGLLHDMGKADRNFQTYLNGSSNKKVDHSSAGAKLWIHILSDTKEYEEYYNTVKFQYYKEIILYLIQSHHGLFDVIDTINIKNKSFERLKYDSKVTYHFNDDVLNYYNYFNNYLIQNENYSMDELIWRGFEEFNVIFNKLKQMAKSNPLAESKKVYLHEFNYYISCFVRLCLSILKEADIYDSANVFEAEKQKVWNQEELQSIWNEAYSKIEMIYRDYENVDKPSELNYTRTEMSKVAKQFASNYKEGIFQLEMPTGAGKTKTSLRYALTNAKNYNRKRIFYITAFLSVLEQNANEIKNIISNDTIVLEHHSNILLEERKDDEQFKYDVEHRMLSYLKESWEAPIILTTMVQFCNTLFKGQASQIRRFCKLIDSVIIIDEVQSLPLKAIYNFNLMMNFMKNIMHCNIVHCTATQPILNSKALKYPVYYGDLNNNNFKIIEKKLIKRTCFDRVVYYNLTGSDARKKMSTYDIIQHVEKTLRDFDSCLIVLNTKKAVRTLYDEFSNQMTNEKIVYLTTNLCAAHRLEIIDEVKQILIKNRNGNSKTKLICISTQLIEAGVDLDFDCVYRSMAGIDSLVQCAGRCNREGKLTKDGQYIQGKIYIINYDMENLANLQDIRQTVTASEEAIRSISIANDEEQISLDEIKSYYFNKYYIENEKKMSYCQRKDGDNMIEQLSINKSMRIAYEQYHYTKYPFRLAQAFREAADNFELIKHDTVGVIVYYKNEDLIEQLLIAIEKRDSYEISKLLKKLQRTTVNVYFNEKLQGYVQNIIKDKVKDGQIWLLDKHYYDEKLGIVTEGLADFIV
>NZ_LN879430.1|WP_058257484.1|549645_550173_+|histidine-phosphatase-family-protein
MKLLVTRHGETEWNRKNMILGRTDITLNETGIMQAKKLRDNIPYPIKYVIASPLQRAAMTANIVCENLNVEIKYDDRLMEMDFGTFEGRDRTCEVYQMEKRNFFTRYPQGESYFQVAQRVYNCLDEIIEKYSDGNVLIITHNGICRVIRTYFDNISNEEFAQYSLKNCELEVYHI
>NZ_LN879430.1|WP_058257483.1|549162_549525_+|hypothetical-protein
MKKIILIGVLIVSMIALTACEQSTEDWPTADEMLNNLQKAGYVITEGDKVQVGAVKHKGYVIIAEKDSEFVAGFWGEDYSSAKEVFNYWDRYQTKFKILVDNTVYCGTKEAIKHAGIDLK
>NZ_LN879430.1|WP_087758730.1|548907_549030_+|ATP-binding-cassette-domain-containing-protein
MLGLKDKLKSYPYQLSGGQQQRVAIARALAIDPESVFLFF
>NZ_LN879430.1|WP_058259174.1|563407_564817_-|PQQ-dependent-sugar-dehydrogenase
MDRLSLGLQPIVHNLNLPTVIKTTIFPGDQEETLMIATQVGEIFYIRNNTIGTFLDIRQNILQLGTNGGYDERGLLGLAFHPNFRYNGLFYLHYSLADSEGPGALPGGFSPNPCDENTLNLRWTDRENRYDHIDTVEEWMLQNEGQPIKRRTLLNIRRPFANHNGVNSLNFSPETGRLVLTIGDGGLGYDPFNLAQTDNEIAGKIIEIDVDMDLFIDNMPVVTRFSELSLQVLESLTVIAKGVRNIPGISYQFFNDRYIKYVGNVGQDLVESIFAFIYYRPVPATDIVKSYIMNSSSNQEGFINLGWRGWEGDLPTSLIRPCDSNLNQKIIAYYNEAITISTKRIYPLCCYYHQDPRVDKFQGRALTGVQAYMGNEIPSLMGSCVFTDFARRTNTVSPPRGVLAYTWFTPECQMNEYYMIDIDYDFGNEAAFFTCLGSNINQTKLYLGVYGSANVTDLNRGSVYEIVKL
>NZ_LN879430.1|WP_058257491.1|565096_565798_+|VanR-ABDEGLN-family-response-regulator-transcription-factor
MSESILIVDDEKEIADLVELYLKNEGYQVYKFYSGYEALECIKNNKLDLAILDVMLPDIDGFRICQKIREHYFFPIIMLTAKVEDMDKIMGLTLGADDYITKPFNPLEVVARVKTQLRRYMRYNQSEGGSDLPLNNEFDFKGLVINKDTHNCTLYGKPLNLTPIEFSILWYLCEKRGKVVSSEELFEAVWGEKFLNNNNTVMAHIGRLREKMNDSYKNPKFIKTVWGVGYQIE
>NZ_LN879430.1|WP_087758732.1|565784_566897_+|HAMP-domain-containing-histidine-kinase
MRLSKRKAKKTNFKRALSFRILVRFFATIIIYSIAVITLFIVAKNFLGLFIWYEHDLLYRILNTIDDNYILFFILVMGLGYLIIFLYYWIRTMGYLDNIIKATEVIYNTEDELIELPSDLKEVEYRMNEIKMDIQKNQRAAKEAEQRKNDLVVYLAHDLKTPLTSVIGYLTLLRDEKDISEELKDKYLSITLEKAERLEELINEFFEITRFSLTDLTLETSKVNLTRMLEQITFEFKPMFLEKNLSYILNVSDNLMIKCDANKMQRVFDNIIRNAINYSFPQTTIEISVEEYSRDIKIRFTNHGNTIPAEKLERIFEQFYRLDSSRTSNTGGAGLGLAIAKEIVELHKGKINAKSDNDIIEFEITLPYIS
>NZ_LN879430.1|WP_058257493.1|567058_568111_+|D-alanine--D-serine-ligase-VanG
MNKKKVAIIFGGCSDEYPVSLESAYAIISHIDNNLFETILIGITKEGSWFRYTGDIEKIKNDTWYEDKEACIPAMISTDRKYPGLIEFNMEELKYLKIDVVFPVLHGKNGEDGTVQGLIELAGIPLVGCGTLSSALCMDKDRAHRLVETLGISVPKAIVLLRPYDNKELFEKTKELNYPLFVKPIKSGSSFGITKVYNKEDLPKAVEIAFMHDDEVIIEENIDGFEVGCAVMGNDELIIGEIDEIELTDGFFDYTEKYNLKKSFIHMPARIDRDTADKVKETAASIYKILGCRGLARVDMFITPDKRIVFNEVNTIPGFTAHSRYPNMMKGIGIVFDELITKLIELGMEQ
>NZ_LN879430.1|WP_058257494.1|568107_568854_+|M15-family-metallopeptidase
MKTITLYKNDIHKGSLILVNKFFPIVRSEDDILMRAIDDDNQDIYLESTTAAVLSHMFITLNCQENIVPISGYRSFKKQQSIYEKSLRDNGREFTEKYVALPNHSEHQTGLAVDLALKRDNIDFICPDFPYQGICNDFRNKAPLYGFIERYQKGKEEITGIGHEPWHFRYVGYPHSLIMNKYNLVLEEYIDLIRLYPYKRKHYLTYLYNQAVEIFYVDTSYKSIELPEDAIHQISGNNVDGFIVTLWR
>NZ_LN879430.1|WP_058257495.1|568858_571012_+|serine-racemase-VanT-catalytic-subunit
MKKTKEYGGIDYFRIIAALLIVAIHTSPLASISNIADFILTRVIARVAVPFFFMTSGFFLFSNGSAKEEKIKRFLKKTSVIYLVTIVLYIPINFYAGYFYKKNLLFNIIKDIIFDGTIYHLWYLPAAILGVALVSLLIKYMSLNRAFIISCILYFIGVFGDSYYKIAAKSAVIKDVYKVIFIFSDYTRNGIFFAPIFLLLGSLVSKNINKFKKKEGLLYLYIFVALMMVEALLLRNFNLMRHDSMYFMLIPCMYFLFSLIVSYKVSSRKEFRNISLLIYLIHPMVIIMIRGGAKFLGMKAILVDNSIIHYILVTLCSGIIAVIIAYYMDKKKDSYPKNSKNKNSKKTCRSWIEINMGNLEHNVKELKSVMPKRCKFMAVVKANAYGHGAIEISRHLNRIGVDAFAVATIDEAIELRKNGIQGEILILGYTDVSRANELNHYHLIQTVIDYEYACMLNSQKKSLQVHIKIDTGMHRLGIPVEDIDKISKVFHMDMLKVTGIFTHLCVADQLDEEAEKFTKEQIDKFYGLLNRLELSGITIPKVHIQSSYGLLNYPQLTCDYARIGIALYGCLSTWEDRTRIGLSLRPVLSLKSKIAIIRNVEKGEGVSYGRDIHVTRDSRIAVLPLGYADGLPRNLSDGTGSVLIHGTKVPIVGRICMDQLLIDVTDMPKVKTGDIATLIGIDGKEEILAANLAKKAGTITNELLSRLGGRIERVYLK
>NZ_LN879430.1|WP_058257496.1|571172_571697_+|hypothetical-protein
MKKINLVYQIGLGGILTSITVILQSAPVFLPIIGLILSPFSTLPVALAALINVYLGLGVFTSSLFILLIVSIQEGAIFLFATGILGIVLGSLLFRKGILITILASSLTLSIGMILLTLIVAIPGFVYMVTCFAFIFIIIIYLMFSLAYVSIWTICFRRLANYLFKINIFGKFYN
>NZ_LN879430.1|WP_058257497.1|571705_572266_-|folate-family-ECF-transporter-S-component
MRKILKSFKDSSKELKSVKCITITAMFGAISIVLNSFTTVMVTKFLKIGFFSFLPSRLVYFLFGPLVGGLFGAAMDILNFIVKPTGTFHPGFTFNALISGIIYGIFLYKKPVSITRILAANIVQMIIVSFILGSYWLTHLTGMTFLQLLPPRALKELIMLPFETFLFFLIIKGVEASGVLKLVYGK
>NZ_LN879430.1|WP_058257498.1|572615_573683_+|DUF362-domain-containing-protein
MSIIYINYGTKLQEITYEIMKEANIKAGLNSDMTIGIKPNLVVSRPAKEGATSHPEIVEGIIQYLQEAGIKNIIILEGSWIGDSTQKAFENCGYSALAKKYKVKLVDTKHDNAIRKESKGIQLNVCESALAVDYLINVPVLKGHCQTGLTCCLKNLKGCIPDSEKRRFHTLGLHTPIAALNAILRPSLHIVDSICGDLSFEEGGNPVVANRIMLGFDPVLLDSYGAQLIGYDPDEIVHLRIAKEYGLGNYISDETNIIELNSQNRPLVNIKANPIGSLLSKYIEEDSACSACYASLIYALDKLDRYKGDRIKIGQGFKGKKIKGLGVGQCTSGCEQYVKGCPPKASDIIKILENL
>NZ_LN879430.1|WP_157893087.1|573858_574029_+|hypothetical-protein
MYIILNTAKLMDENQTLYKLKELEYIEKICENVGNITVGGGTDLLSQLTKIIKGES

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NZ_CP038888	Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence	36338-36371	6	0.824
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	112719-112752	7	0.794
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NC_009344	Shigella dysenteriae Sd197 plasmid pSD197_spA, complete sequence	4490-4523	7	0.794
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	HE616532	Shigella sonnei 53G plasmid E, complete genome	3750-3783	7	0.794
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NZ_LR134427	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 18	5079-5112	7	0.794
NZ_LN879430_1	1.24\|560195\|33\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	560195-560227	33	MN694000	Marine virus AFVG_250M989, complete genome	16214-16246	8	0.758
NZ_LN879430_1	1.24\|560195\|33\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	560195-560227	33	MN694459	Marine virus AFVG_250M532, complete genome	32255-32287	8	0.758
NZ_LN879430_1	1.45\|561612\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	561612-561646	35	NZ_CP006906	Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence	159942-159976	8	0.771
NZ_LN879430_1	1.17\|559727\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	559727-559760	34	MF360958	Salicola phage SCTP-2, complete genome	130873-130906	9	0.735
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NC_017140	Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence	8778-8811	9	0.735
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	261083-261116	9	0.735
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NZ_CP048323	Escherichia coli strain 64 plasmid p64-A, complete sequence	4070-4103	9	0.735
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NZ_LR217721	Candidatus Erwinia haradaeae strain ErCilaricifoliae isolate 3058 plasmid pBioThi	32455-32488	9	0.735
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NC_019924	Clostridium phage phi8074-B1, complete genome	11123-11156	9	0.735
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	AP014255	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S25-C160, * SEQUENCING IN PROGRESS *	6913-6946	9	0.735
NZ_LN879430_1	1.7\|559051\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	559051-559085	35	NZ_CP039703	Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence	230429-230463	10	0.714
NZ_LN879430_1	1.7\|559051\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	559051-559085	35	NZ_CP039706	Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence	474782-474816	10	0.714
NZ_LN879430_1	1.7\|559051\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	559051-559085	35	NZ_MK413720	Enterobacter cloacae strain 12949 plasmid p12949-HI2, complete sequence	227242-227276	10	0.714
NZ_LN879430_1	1.7\|559051\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	559051-559085	35	NZ_MG288680	Klebsiella pneumoniae strain D610 plasmid pD610-HI2, complete sequence	216183-216217	10	0.714
NZ_LN879430_1	1.7\|559051\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	559051-559085	35	NZ_MF344582	Citrobacter freundii strain 525011 plasmid p525011-HI2, complete sequence	276585-276619	10	0.714
NZ_LN879430_1	1.50\|561948\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	561948-561981	34	MN694010	Marine virus AFVG_250M212, complete genome	19463-19496	10	0.706
NZ_LN879430_1	1.50\|561948\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	561948-561981	34	NC_024792	Bacillus phage Bobb, complete genome	74985-75018	10	0.706
NZ_LN879430_1	1.54\|562214\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562214-562248	35	AP013817	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, * SEQUENCING IN PROGRESS *	8175-8209	10	0.714
NZ_LN879430_1	1.54\|562214\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562214-562248	35	MH327490	Marine virus AG-345-A17 Ga0172217_11 genomic sequence	2735-2769	10	0.714
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	NC_013792	Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence	173140-173173	10	0.706
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	KX373692	Lactococcus phage M6654, complete genome	22273-22306	10	0.706
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	KX373691	Lactococcus phage M6653, complete genome	22080-22113	10	0.706
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	L33769	Lactococcus phage bIL67, complete genome	45-78	10	0.706
NZ_LN879430_1	1.54\|562214\|35\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562214-562248	35	KM359505	Prochlorococcus phage P-TIM68, complete genome	149830-149864	11	0.686
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	MN689513	Lactococcus phage CHPC1242, partial genome	21056-21089	11	0.676
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	KY705270	Streptococcus phage P7573, complete genome	24120-24153	11	0.676
NZ_LN879430_1	1.64\|562880\|34\|NZ_LN879430\|PILER-CR,CRISPRCasFinder,CRT	562880-562913	34	KY705281	Streptococcus phage P7955, complete genome	24113-24146	11	0.676

1. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038888 (Piscirickettsia salmonis strain Psal-004 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.824

ttttttaattttaaatgtttgttttgtttctgta--	CRISPR spacer
ttttttaattttaactatttgttt--tttatgcagt	Protospacer
************** *.*******  *** **.*

2. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 7, identity: 0.794

ttttttaatt---ttaaatgtttgttttgtttctgta	CRISPR spacer
---actaatttagttaaatattggttttgtttctgta	Protospacer
    .*****   ******.** **************

3. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NC_009344 (Shigella dysenteriae Sd197 plasmid pSD197_spA, complete sequence) position: , mismatch: 7, identity: 0.794

ttttttaattttaaatgtt-tgttttgtttctgta	CRISPR spacer
atttttaattttaaatgttcttttttaattcctt-	Protospacer
 ****************** * ****. ***. *

4. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to HE616532 (Shigella sonnei 53G plasmid E, complete genome) position: , mismatch: 7, identity: 0.794

ttttttaattttaaatgtt-tgttttgtttctgta	CRISPR spacer
atttttaattttaaatgttcttttttaattcctt-	Protospacer
 ****************** * ****. ***. *

5. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134427 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 18) position: , mismatch: 7, identity: 0.794

ttttttaattttaaatgtttgttttgtttctgta-	CRISPR spacer
ttttttatttttaactgtttg-tttatctttgtct	Protospacer
******* ****** ****** ***.*.*.***

6. spacer 1.24|560195|33|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to MN694000 (Marine virus AFVG_250M989, complete genome) position: , mismatch: 8, identity: 0.758

taagtattctttctcagcctgttcttcttgcgt	CRISPR spacer
ctttttttctttctcaggctcttcttcttgcat	Protospacer
.   * *********** ** **********.*

7. spacer 1.24|560195|33|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to MN694459 (Marine virus AFVG_250M532, complete genome) position: , mismatch: 8, identity: 0.758

taagtattctttctcagcctgttcttcttgcgt	CRISPR spacer
ctttttttctttctcaggctcttcttcttgcat	Protospacer
.   * *********** ** **********.*

8. spacer 1.45|561612|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006906 (Clostridium baratii str. Sullivan plasmid pCBJ, complete sequence) position: , mismatch: 8, identity: 0.771

ttttttaacttaattataggttttattgttttttt	CRISPR spacer
ttttttatcttatttataggttttaatttagcatt	Protospacer
******* **** ************ * *  . **

9. spacer 1.17|559727|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 9, identity: 0.735

aagatataaaagaaaaaaccactgtta-atgcaag	CRISPR spacer
catatataaatgaaaaaactactgttatatatcg-	Protospacer
 * ******* ********.******* **.. .

10. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NC_017140 (Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence) position: , mismatch: 9, identity: 0.735

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
gagtttaattttaactgtttgtattgtttttcgt	Protospacer
   *********** ******* ******.*

11. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 9, identity: 0.735

ttttttaattttaaatgtttgttttgtttctgta-------	CRISPR spacer
tttttatattttaaatgtttgtt-------tgtacaaaaac	Protospacer
*****  ****************       ****

12. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048323 (Escherichia coli strain 64 plasmid p64-A, complete sequence) position: , mismatch: 9, identity: 0.735

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
atttttaattttaaatgttcttttttaatttctt	Protospacer
 ******************. ****   *.* *

13. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR217721 (Candidatus Erwinia haradaeae strain ErCilaricifoliae isolate 3058 plasmid pBioThi) position: , mismatch: 9, identity: 0.735

ttttttaattttaaatgtttgttt-----tgtttctgta	CRISPR spacer
tttttttattttaaatgtttatttgaaaatatat-----	Protospacer
****** *************.***     *.* *

14. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NC_019924 (Clostridium phage phi8074-B1, complete genome) position: , mismatch: 9, identity: 0.735

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
tactgtgtctttaaatgtttgtattgtgtctgtc	Protospacer
* .* *. .************* **** *****

15. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to AP014255 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S25-C160, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
ttttttaatttgaaatgcttgtttcatagaacta	Protospacer
*********** *****.******..*     **

16. spacer 1.7|559051|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 10, identity: 0.714

caaaacattttataatatagttttattgcaggaca	CRISPR spacer
aaaaacactttataagatagttttattctccatct	Protospacer
 ******.******* *********** .  . *

17. spacer 1.7|559051|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039706 (Clostridium butyricum strain 4-1 plasmid p-butyl_plas_4-1, complete sequence) position: , mismatch: 10, identity: 0.714

caaaacattttataatatagttttattgcaggaca	CRISPR spacer
aaaaacactttataagatagttttattctccatct	Protospacer
 ******.******* *********** .  . *

18. spacer 1.7|559051|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK413720 (Enterobacter cloacae strain 12949 plasmid p12949-HI2, complete sequence) position: , mismatch: 10, identity: 0.714

caaaacattttataatatagttttattgcaggaca	CRISPR spacer
caaaacattttaaaatatagttataaaaaactaag	Protospacer
************ ********* **  . *  * .

19. spacer 1.7|559051|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG288680 (Klebsiella pneumoniae strain D610 plasmid pD610-HI2, complete sequence) position: , mismatch: 10, identity: 0.714

caaaacattttataatatagttttattgcaggaca	CRISPR spacer
caaaacattttaaaatatagttataaaaaactaag	Protospacer
************ ********* **  . *  * .

20. spacer 1.7|559051|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF344582 (Citrobacter freundii strain 525011 plasmid p525011-HI2, complete sequence) position: , mismatch: 10, identity: 0.714

caaaacattttataatatagttttattgcaggaca	CRISPR spacer
caaaacattttaaaatatagttataaaaaactaag	Protospacer
************ ********* **  . *  * .

21. spacer 1.50|561948|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to MN694010 (Marine virus AFVG_250M212, complete genome) position: , mismatch: 10, identity: 0.706

tagttgcttttgttgttcttctctgtaagcctta	CRISPR spacer
tagtttctgttgttgttcttctctacctaactct	Protospacer
***** ** ***************..  . **.

22. spacer 1.50|561948|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NC_024792 (Bacillus phage Bobb, complete genome) position: , mismatch: 10, identity: 0.706

tagttgcttttgttgttcttctctgtaagcctta	CRISPR spacer
tagttgcttttgttgatcttcacttgcttcccct	Protospacer
*************** ***** **     **..

23. spacer 1.54|562214|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to AP013817 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.714

agtatgaaaaagatgaatatatcaaaatgttggct	CRISPR spacer
attttgaagaagatgaatatatgaaaatggaaaaa	Protospacer
* * ****.************* ******  ..

24. spacer 1.54|562214|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to MH327490 (Marine virus AG-345-A17 Ga0172217_11 genomic sequence) position: , mismatch: 10, identity: 0.714

agtatgaaaaagatgaatatatcaaaatgttggct	CRISPR spacer
attttgaagaagatgaatatatgaaaatggaaaaa	Protospacer
* * ****.************* ******  ..

25. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to NC_013792 (Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence) position: , mismatch: 10, identity: 0.706

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
gctaatccttttaaatggtttttttgtttctgct	Protospacer
 .*  *  ********* ** ***********.

26. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to KX373692 (Lactococcus phage M6654, complete genome) position: , mismatch: 10, identity: 0.706

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
tttttttattttaaatttttgtttgagtttaaag	Protospacer
****** ********* ******* . **. . .

27. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to KX373691 (Lactococcus phage M6653, complete genome) position: , mismatch: 10, identity: 0.706

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
tttttttattttaaatttttgtttgagtttaaag	Protospacer
****** ********* ******* . **. . .

28. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to L33769 (Lactococcus phage bIL67, complete genome) position: , mismatch: 10, identity: 0.706

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
tttttttattttaaatttttgtttgagtttaaag	Protospacer
****** ********* ******* . **. . .

29. spacer 1.54|562214|35|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 11, identity: 0.686

agtatgaaaaagatgaatatatcaaaatgttggct	CRISPR spacer
agtatgaaaaagatgagtctatcaagaaaacaaag	Protospacer
****************.* ******.* . ...

30. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to MN689513 (Lactococcus phage CHPC1242, partial genome) position: , mismatch: 11, identity: 0.676

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
tttttttattttaaatttttgtttaagattaaag	Protospacer
****** ********* ******* .  *. . .

31. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to KY705270 (Streptococcus phage P7573, complete genome) position: , mismatch: 11, identity: 0.676

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
gtttttaattttatatctttgttttttagaaact	Protospacer
 ************ ** ******** *    ..

32. spacer 1.64|562880|34|NZ_LN879430|PILER-CR,CRISPRCasFinder,CRT matches to KY705281 (Streptococcus phage P7955, complete genome) position: , mismatch: 11, identity: 0.676

ttttttaattttaaatgtttgttttgtttctgta	CRISPR spacer
gtttttaattttatatctttgttttttagaaact	Protospacer
 ************ ** ******** *    ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

141480 : 149858

uncultured_Caudovirales_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058257145.1\|141480_143535_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.8e-07	26.7
WP_058257146.1\|143774_144494_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-26	34.3
WP_058257147.1\|144668_145547_+	hypothetical protein	NA	NA	NA	NA
WP_058257148.1\|145703_147233_+	DNA methylase	M1Q231	Streptococcus_phage	1.7e-33	28.6
WP_058257149.1\|147245_147650_+	hypothetical protein	NA	NA	NA	NA
WP_087758703.1\|147671_148340_-	HAD family phosphatase	A0A1D8KNV9	Synechococcus_phage	3.6e-12	27.6
WP_157893075.1\|148369_149005_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	3.8e-19	44.9
WP_058257151.1\|149114_149858_-	hypothetical protein	M1HTS7	Paramecium_bursaria_Chlorella_virus	3.3e-14	27.3

DBSCAN-SWA_2

963855 : 972896

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058257806.1\|963855_964860_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	7.0e-20	25.4
WP_058257807.1\|964886_965615_-	response regulator transcription factor	NA	NA	NA	NA
WP_058257808.1\|965852_966539_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
WP_058257809.1\|966650_967352_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.7e-34	36.0
WP_087758940.1\|967812_969252_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	5.4e-13	26.9
WP_058259194.1\|969414_970173_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA
WP_058257811.1\|970194_971073_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.0e-100	60.1
WP_058257812.1\|971109_971661_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.0e-41	49.2
WP_058257813.1\|971876_972896_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.3e-85	48.6

DBSCAN-SWA_3

1557504 : 1654392

100

Erysipelothrix_phage(69.12%)

portal,capsid,transposase,head,protease,terminase,holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058258309.1\|1557504_1557966_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	8.0e-19	35.4
WP_058258310.1\|1558130_1559054_-	hypothetical protein	NA	NA	NA	NA
WP_058258311.1\|1559050_1559533_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_058258312.1\|1560121_1560454_-	hypothetical protein	NA	NA	NA	NA
WP_058258313.1\|1560495_1561419_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	4.3e-48	38.2
WP_087758846.1\|1561484_1562135_-	hypothetical protein	NA	NA	NA	NA
WP_058258314.1\|1562526_1563825_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_157893110.1\|1563840_1564014_-	hypothetical protein	NA	NA	NA	NA
WP_058258315.1\|1564522_1565311_-	aminoglycoside nucleotidyltransferase ANT(9)	NA	NA	NA	NA
WP_002294507.1\|1565442_1565970_-	adenine phosphoribosyltransferase	A0A1X9I6E2	Streptococcus_phage	1.9e-93	100.0
WP_002294505.1\|1566013_1566877_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	A0A1X9I6F2	Streptococcus_phage	8.7e-168	100.0
WP_000662263.1\|1566909_1567644_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.5e-141	100.0
WP_000228166.1\|1567624_1568494_-	nucleotidyltransferase domain-containing protein	A0A1X9I6C9	Streptococcus_phage	4.3e-159	95.8
WP_000567889.1\|1568596_1568842_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_024400882.1\|1568985_1570557_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	8.6e-174	61.1
WP_058258316.1\|1570560_1570974_-	recombinase	NA	NA	NA	NA
WP_058258317.1\|1570974_1572540_-	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	5.4e-160	54.4
WP_058258318.1\|1572592_1572823_-	hypothetical protein	A0A2K5B2B1	Erysipelothrix_phage	3.2e-05	40.6
WP_058258319.1\|1572953_1573655_-	N-acetylmuramoyl-L-alanine amidase	H7BVK7	unidentified_phage	7.5e-45	41.6
WP_058258320.1\|1573682_1575101_-	hypothetical protein	NA	NA	NA	NA
WP_058258321.1\|1575097_1575532_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	2.9e-47	66.2
WP_058258322.1\|1575609_1578081_-	hypothetical protein	NA	NA	NA	NA
WP_058258323.1\|1578092_1578596_-	hypothetical protein	A0A2K9V3F4	Faecalibacterium_phage	4.6e-20	38.7
WP_058258324.1\|1578611_1580540_-	siphovirus ReqiPepy6 Gp37-like family protein	D2J072	Enterococcus_phage	1.0e-22	29.2
WP_058258325.1\|1580542_1581394_-\|tail	phage tail family protein	E2ELJ6	Clostridium_phage	4.7e-41	34.7
WP_087758848.1\|1581406_1584151_-\|tail	phage tail protein	A0A2K5B297	Erysipelothrix_phage	1.5e-24	67.8
WP_058258326.1\|1584352_1584739_-	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	9.5e-42	68.8
WP_058258327.1\|1584743_1585343_-\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	6.4e-77	73.1
WP_058258328.1\|1585346_1585688_-	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	1.8e-28	52.3
WP_058258329.1\|1585684_1586116_-	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	1.0e-44	62.2
WP_058258330.1\|1586121_1586457_-\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	2.3e-28	53.6
WP_058258331.1\|1586458_1586779_-\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	5.9e-37	77.0
WP_058258332.1\|1586798_1587179_-	hypothetical protein	A0A2K5B289	Erysipelothrix_phage	1.6e-12	43.5
WP_058258333.1\|1587191_1588397_-\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	1.7e-190	82.8
WP_058258334.1\|1588417_1589119_-\|protease	Clp protease ClpP	A0A2K5B288	Erysipelothrix_phage	2.2e-73	61.5
WP_058258335.1\|1589115_1590363_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.2e-175	72.1
WP_058258336.1\|1590476_1590914_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_058258337.1\|1590914_1592519_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	2.6e-266	83.1
WP_058258338.1\|1592597_1592786_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_058258339.1\|1592778_1593237_-	gamma-glutamylcyclotransferase	G3MAQ5	Bacillus_virus	4.8e-16	34.3
WP_058258340.1\|1593281_1594181_-	amidoligase family protein	A0A2K9V489	Faecalibacterium_phage	1.3e-52	42.1
WP_058258341.1\|1594323_1594548_-	DUF4314 domain-containing protein	A0A2K5B281	Erysipelothrix_phage	1.7e-11	58.2
WP_058258342.1\|1594540_1595230_-	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	2.1e-52	50.5
WP_058258343.1\|1595320_1596553_-	site-specific DNA-methyltransferase	A0A2I4R670	Erysipelothrix_phage	1.0e-145	61.8
WP_058258344.1\|1596559_1597138_-\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	1.6e-53	55.4
WP_058258345.1\|1597396_1598083_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.0e-06	21.6
WP_058258346.1\|1598075_1599548_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.4e-16	26.0
WP_058258347.1\|1599980_1601669_-	ATP-dependent helicase	A0A068EQC7	Bacillus_phage	1.9e-17	26.6
WP_058258348.1\|1601653_1603702_-	AAA family ATPase	NA	NA	NA	NA
WP_058258349.1\|1603777_1607026_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_058258350.1\|1607025_1610160_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	2.1e-38	30.6
WP_058258351.1\|1610175_1613019_-	DEAD/DEAH box helicase family protein	A0A2H4J643	uncultured_Caudovirales_phage	1.4e-219	45.7
WP_014256634.1\|1613046_1613256_-	helix-turn-helix transcriptional regulator	A0A2K5B261	Erysipelothrix_phage	5.5e-20	70.6
WP_058258352.1\|1613686_1614985_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
WP_157893111.1\|1615000_1615174_-	hypothetical protein	NA	NA	NA	NA
WP_058258353.1\|1615996_1616500_-	hypothetical protein	NA	NA	NA	NA
WP_027622175.1\|1617164_1618007_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_027622176.1\|1618058_1619183_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_027622177.1\|1619406_1620141_-	iron-sulfur cluster loop	NA	NA	NA	NA
WP_027622178.1\|1620178_1620586_-	hypothetical protein	NA	NA	NA	NA
WP_027622179.1\|1620624_1621455_-	HNH endonuclease	NA	NA	NA	NA
WP_027622180.1\|1621432_1621843_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_011837761.1\|1622116_1623229_-\|transposase	IS30-like element ISCth2 family transposase	H7BWC8	unidentified_phage	2.1e-89	53.1
WP_058258354.1\|1623344_1624913_-	recombinase family protein	A0A2K5B2B4	Erysipelothrix_phage	9.9e-170	57.5
WP_087758849.1\|1624875_1625367_-	recombinase	A0A2K5B2B3	Erysipelothrix_phage	2.8e-22	43.8
WP_058258355.1\|1625330_1626899_-	recombinase family protein	A0A2K5B2B2	Erysipelothrix_phage	1.2e-151	53.1
WP_004400094.1\|1626960_1627179_-	hypothetical protein	NA	NA	NA	NA
WP_058258356.1\|1627236_1628241_-	N-acetylmuramoyl-L-alanine amidase	H7BVK7	unidentified_phage	7.5e-22	31.4
WP_058258357.1\|1628237_1628657_-\|holin	phage holin family protein	A0A2K5B2A2	Erysipelothrix_phage	2.5e-51	71.3
WP_058258358.1\|1628744_1631213_-	glycosyl hydrolase	A0A2K5B2A1	Erysipelothrix_phage	0.0e+00	68.5
WP_058258359.1\|1631209_1631785_-	hypothetical protein	A0A2K5B2A0	Erysipelothrix_phage	1.8e-52	52.4
WP_058258360.1\|1631992_1632781_+	23S ribosomal RNA methyltransferase Erm	E4ZFQ0	Streptococcus_phage	1.4e-34	36.4
WP_058258361.1\|1632999_1635522_-\|tail	phage tail protein	A0A2K5B298	Erysipelothrix_phage	0.0e+00	63.3
WP_058258362.1\|1635526_1636300_-\|tail	phage tail family protein	A0A2I4R672	Erysipelothrix_phage	2.5e-73	51.9
WP_058258363.1\|1636313_1638500_-\|tail	phage tail protein	A0A2K5B297	Erysipelothrix_phage	2.4e-12	38.5
WP_003520671.1\|1638527_1638719_-	hypothetical protein	A0A2K5B296	Erysipelothrix_phage	3.9e-12	75.6
WP_003516030.1\|1638715_1639099_-	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	8.9e-40	68.8
WP_058258364.1\|1639098_1639698_-\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	1.4e-79	74.7
WP_058258365.1\|1639703_1640048_-	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	2.0e-30	55.9
WP_014256681.1\|1640044_1640476_-	HK97 gp10 family phage protein	A0A2K5B292	Erysipelothrix_phage	1.6e-45	62.2
WP_058258366.1\|1640492_1640828_-\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	5.2e-28	56.0
WP_004400079.1\|1640830_1641139_-\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	3.0e-38	75.5
WP_028992638.1\|1641160_1642363_-\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	4.9e-177	78.2
WP_058258367.1\|1642376_1643102_-\|protease	Clp protease ClpP	A0A2K5B288	Erysipelothrix_phage	2.5e-75	64.1
WP_058258368.1\|1643040_1644363_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	4.0e-188	75.0
WP_014256685.1\|1644359_1646012_-\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	3.0e-249	77.2
WP_014256686.1\|1646066_1646261_-	DUF5049 domain-containing protein	NA	NA	NA	NA
WP_058258369.1\|1646264_1646732_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_058258370.1\|1646796_1647696_-	amidoligase family protein	A0A2K9V489	Faecalibacterium_phage	1.9e-53	42.1
WP_058258371.1\|1647837_1648068_-	DUF4314 domain-containing protein	NA	NA	NA	NA
WP_046499172.1\|1648064_1648400_-	hypothetical protein	NA	NA	NA	NA
WP_058258372.1\|1648392_1649085_-	virulence factor	A0A2K5B280	Erysipelothrix_phage	2.3e-30	36.1
WP_058258373.1\|1649201_1650455_-	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	5.4e-102	47.2
WP_058258374.1\|1650460_1651759_-	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	6.2e-77	40.5
WP_004400063.1\|1651733_1651916_-	hypothetical protein	NA	NA	NA	NA
WP_003515999.1\|1651915_1652467_-\|terminase	P27 family phage terminase small subunit	A0A2K5B277	Erysipelothrix_phage	3.1e-70	68.1
WP_058258375.1\|1652690_1653050_-	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	3.7e-40	62.2
WP_058258376.1\|1653185_1653416_-	hypothetical protein	NA	NA	NA	NA
WP_004400053.1\|1653542_1653998_-	hypothetical protein	NA	NA	NA	NA
WP_014256659.1\|1654089_1654392_-	VRR-NUC domain-containing protein	I3VYX6	Thermoanaerobacterium_phage	2.6e-26	65.2

DBSCAN-SWA_4

1947609 : 1956665

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058258611.1\|1947609_1948926_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3SN07	Prochlorococcus_phage	1.2e-59	38.1
WP_058258612.1\|1948995_1949364_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_058258613.1\|1949380_1950466_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_058258614.1\|1950714_1951491_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.1e-31	37.4
WP_087758959.1\|1951588_1952299_+	ABC transporter permease	G3M9Y4	Bacillus_virus	2.7e-10	27.8
WP_058258615.1\|1952471_1953341_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	2.6e-10	32.1
WP_058258616.1\|1953673_1954540_+	NYN domain-containing protein	A0A0K2CNZ2	Brevibacillus_phage	7.7e-07	28.6
WP_058258617.1\|1954970_1956665_-	molecular chaperone HscC	E5ESM6	Bathycoccus_sp._RCC1105_virus	4.3e-78	34.1

DBSCAN-SWA_5

2379991 : 2443219

Planktothrix_phage(28.57%)

tRNA,coat,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087758909.1\|2379991_2380270_-\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_087758969.1\|2380250_2380370_-\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_058258961.1\|2380791_2381718_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-15	29.2
WP_058258962.1\|2381735_2382614_+	VanZ family protein	NA	NA	NA	NA
WP_058258963.1\|2382591_2385018_-	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_058258964.1\|2385193_2385439_-	hypothetical protein	NA	NA	NA	NA
WP_058258965.1\|2385636_2385990_+	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_058258966.1\|2386063_2387899_-	ATP-dependent helicase	G3MA40	Bacillus_virus	4.6e-86	35.0
WP_058258967.1\|2388049_2389540_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_058258968.1\|2389582_2390011_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_162287270.1\|2390151_2391486_-	ABC transporter permease	NA	NA	NA	NA
WP_058258970.1\|2391490_2391994_-	hypothetical protein	NA	NA	NA	NA
WP_058258971.1\|2392025_2394479_-	hypothetical protein	NA	NA	NA	NA
WP_087758911.1\|2394559_2395351_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.4e-36	37.8
WP_058258972.1\|2395521_2396715_-	AI-2E family transporter	NA	NA	NA	NA
WP_058258973.1\|2396912_2399441_-	transglutaminase domain-containing protein	NA	NA	NA	NA
WP_058258974.1\|2399456_2400704_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_058258975.1\|2400714_2401701_-	MoxR family ATPase	NA	NA	NA	NA
WP_058258976.1\|2401997_2403095_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_157893124.1\|2403176_2403317_+	hypothetical protein	NA	NA	NA	NA
WP_058258977.1\|2403508_2404861_+	Trk system potassium transporter TrkA	NA	NA	NA	NA
WP_058258978.1\|2404935_2406396_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_058258979.1\|2406384_2407062_-	DUF3298 and DUF4163 domain-containing protein	NA	NA	NA	NA
WP_058258980.1\|2407132_2409220_-	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	A7XX33	Thermus_virus	1.5e-125	39.5
WP_058258981.1\|2409509_2410958_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_058258982.1\|2411387_2412461_-	plasmid recombination protein	NA	NA	NA	NA
WP_058258983.1\|2413090_2413357_-	hypothetical protein	NA	NA	NA	NA
WP_058258984.1\|2413361_2414048_-	hypothetical protein	NA	NA	NA	NA
WP_157893125.1\|2414177_2415038_-	protein rep	NA	NA	NA	NA
WP_058258981.1\|2415328_2416777_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA
WP_058258986.1\|2417153_2418431_+\|tRNA	serine--tRNA ligase	A0A1V0SK42	Klosneuvirus	3.5e-48	30.1
WP_058258987.1\|2418493_2420842_-	CotH kinase family protein	NA	NA	NA	NA
WP_058258988.1\|2420998_2421601_-	hypothetical protein	NA	NA	NA	NA
WP_058258989.1\|2421939_2422158_-	hypothetical protein	NA	NA	NA	NA
WP_058258990.1\|2422249_2422813_-\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_058258991.1\|2422802_2423363_-	metalloregulator ArsR/SmtB family transcription factor	NA	NA	NA	NA
WP_058258992.1\|2423373_2423751_-	hypothetical protein	NA	NA	NA	NA
WP_058258993.1\|2423940_2424867_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_058258994.1\|2425076_2425718_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_058258995.1\|2425739_2428358_+	bifunctional acetaldehyde-CoA/alcohol dehydrogenase	NA	NA	NA	NA
WP_058258996.1\|2428371_2429121_+	phosphotransferase	NA	NA	NA	NA
WP_087758912.1\|2430314_2431205_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	6.4e-41	37.5
WP_157893126.1\|2432857_2433292_+	hypothetical protein	NA	NA	NA	NA
WP_058259001.1\|2433288_2433930_-	endonuclease III domain-containing protein	NA	NA	NA	NA
WP_058259002.1\|2433922_2434171_-	hypothetical protein	NA	NA	NA	NA
WP_058259003.1\|2434192_2434879_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-25	35.1
WP_058259004.1\|2434878_2436015_-	hypothetical protein	NA	NA	NA	NA
WP_058259005.1\|2436016_2437027_-	hypothetical protein	NA	NA	NA	NA
WP_157893127.1\|2439122_2439281_-	hypothetical protein	NA	NA	NA	NA
WP_157893139.1\|2439344_2439536_-	UPF0236 family protein	NA	NA	NA	NA
WP_058258272.1\|2441746_2443219_+\|transposase	ISLre2 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage