CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_LR736240	Staphylococcus epidermidis isolate BPH0662 plasmid 4	0 crisprs	NA	0	0	0
NZ_LT571450	Staphylococcus epidermidis isolate BPH0662 plasmid 2	0 crisprs	NA	0	0	0
NZ_LT571449	Staphylococcus epidermidis isolate BPH0662 chromosome 1	4 crisprs	cas3,csa3,DEDDh,DinG,WYL	2	2	9
NZ_LT571451	Staphylococcus epidermidis isolate BPH0662 plasmid 3	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT571449_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT571449_1

133737-133824

Orphan

Consensus_repeat	Method
GGATGGGGCCCCAACAAAGAGAATTTCACTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT571449_1

>merge|NZ_LT571449|1|133737-133824|CRISPRCasFinder
GGATGGGGCCCCAACAAAGAGAATTTCACTGAGAAATTCAACAAGCAAAGCAAGTTGGGGATGGGCCCCAACAAAGAGAATTTCACTG

>NZ_LT571449|1|1|133737-133824|CRISPRCasFinder
GGATGGGGCCCCAACAAAGAGAATTTCACTG	AGAAATTCAACAAGCAAAGCAAGTTG
GGGATGGGCCCCAACAAAGAGAATTTCACTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT571449.1\|WP_001831345.1\|129461_129758_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_LT571449.1\|WP_001829387.1\|141382_142285_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380149
NZ_LT571449.1\|WP_001831333.1\|129780_130290_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|168659
NZ_LT571449.1\|WP_001829411.1\|143203_143611_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|378584
NZ_LT571449.1\|WP_001831355.1\|128002_128194_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT571449.1\|WP_002456828.1\|134452_135076_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
NZ_LT571449.1\|WP_002437166.1\|137888_138668_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226480
NZ_LT571449.1\|WP_001829358.1\|139685_141074_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_LT571449.1\|WP_001832461.1\|131528_131783_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|225170
NZ_LT571449.1\|WP_001830921.1\|131046_131307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT571449.1\|WP_002437185.1\|133855_134233_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT571449.1\|WP_001831354.1\|130334_130577_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_LT571449.1\|WP_002455899.1\|138808_139564_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_LT571449.1\|WP_002437170.1\|136874_137444_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NZ_LT571449.1\|WP_002455908.1\|128267_129077_-\|lysozyme	unknown	unknown	gnl\|CDD\|119383
NZ_LT571449.1\|WP_002484799.1\|126672_127770_+\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_LT571449.1\|WP_002456826.1\|132907_133498_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_LT571449.1\|WP_002437172.1\|135336_136860_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NZ_LT571449.1\|WP_001830914.1\|132254_132887_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
NZ_LT571449.1\|WP_002455897.1\|142410_143076_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT571449.1\|WP_001831345.1\|129461_129758_+\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	4.8221e-36
NZ_LT571449.1\|WP_001829387.1\|141382_142285_-\|hypothetical-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	0.000708705
NZ_LT571449.1\|WP_001831333.1\|129780_130290_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|168659	PRK06751, PRK06751, single-stranded DNA-binding protein; Provisional.	7.31904e-63
NZ_LT571449.1\|WP_001829411.1\|143203_143611_-\|general-stress-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	1.18912e-16
NZ_LT571449.1\|WP_002456828.1\|134452_135076_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	3.6171e-78
NZ_LT571449.1\|WP_002437166.1\|137888_138668_-\|hypothetical-protein	gnl\|CDD\|226480	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism].	7.67998e-54
NZ_LT571449.1\|WP_001829358.1\|139685_141074_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_LT571449.1\|WP_001832461.1\|131528_131783_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	1.06396e-07
NZ_LT571449.1\|WP_002437170.1\|136874_137444_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.42852e-125
NZ_LT571449.1\|WP_001831354.1\|130334_130577_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.06497e-43
NZ_LT571449.1\|WP_002455899.1\|138808_139564_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.49022e-90
NZ_LT571449.1\|WP_002455908.1\|128267_129077_-\|lysozyme	gnl\|CDD\|119383	cd06523, GH25_PlyB-like, PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.	2.15473e-55
NZ_LT571449.1\|WP_002484799.1\|126672_127770_+\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_LT571449.1\|WP_002456826.1\|132907_133498_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	8.59751e-47
NZ_LT571449.1\|WP_002437172.1\|135336_136860_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NZ_LT571449.1\|WP_001830914.1\|132254_132887_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.9097e-35

>NZ_LT571449.1|WP_002456826.1|132907_133498_+|histidine-phosphatase-family-protein
MEIYLVRHGESQSNYDNKHGYLYFCGQLDVPLTERGIKSAKELSVYFKNKYIDNVYVSDLKRTRQTYEELFPYDIPTIYTKTLRERSLGVFEGKNKEEVCKDKRFEKYFRDPNYKYFRHSFSQKAPQGESYQDVYDRVVTFIENELNQQQRRVVIVAHQVVIRCFFVYFKMITKEEALTTEIHNCYPYLIKEEMKF
>NZ_LT571449.1|WP_001830914.1|132254_132887_+|LysE-family-translocator
MDGLITFIIITLLIIIVPGPDFIIVMKNTINSSKMNGFMAAFGITTGHILYSSLAIFGIIYILTSLHFVFLTIKILGACYLIYLGIKSILSAHSSVDFSKQALADVRNVSYITSFRQGFLSTSLNPKALLFYVSIFPQFLSNGNIHMKSEVALFAFSVVVVICLWFLFCVFIFQYIKLLFSRPRFKAIFDYIVGFVLIGLSINLLLSKSS
>NZ_LT571449.1|WP_001832461.1|131528_131783_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MFGLIGMIIVGGIIGWIAGLILGKDVPGGILGNIIAGIVGSWVGTMILGEWGPQLGKIHIFPALLGSIILIFIISLILKALRKK
>NZ_LT571449.1|WP_001830921.1|131046_131307_-|hypothetical-protein
MQHKNKFQRINQIIQVIGFLSFLAILTIITLNFFIKGHLQGHFEIGFNIQSNQVYVVTTLIIVTIICTILSAILNMLSNKKQNYKH
>NZ_LT571449.1|WP_001831354.1|130334_130577_+|30S-ribosomal-protein-S18
MAGGPRRGGRRRKKVCYFTANGITHIDYKDTELLKRFISERGKILPRRVTGTSAKYQRMLTTAIKRARHMALLPYVKEEQ
>NZ_LT571449.1|WP_001831333.1|129780_130290_+|single-stranded-DNA-binding-protein
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQAENVNNYLSKGSLAGVDGRIQSRSYENQEGRRIFVTEVVCDSVQFLEPKNAQHGGQRSQNNNFQDYGQGFGGQQSGQNTSYNNNNSSNSNQSDNPFANANGPIDISDDDLPF
>NZ_LT571449.1|WP_001831345.1|129461_129758_+|30S-ribosomal-protein-S6
MRTYEIMYIVRPNIEEDAKKALVERFNGILASEGSEVLEEKDWGKRRLAYEINDFKEGFYNIVRIKTDNNKSTDEFQRLAKINDDIIRYIVIREDQDK
>NZ_LT571449.1|WP_002455908.1|128267_129077_-|lysozyme
MLKKFSYSIISLSIFATSLNFIDTQAQASSSSVSEKGTMGYGYQQYLKDHPKKQTHKTQNRSTFSAESNITETNNGERVLDISEWQGLLTNEQIKQLKKNYDFIILRAQYGSEYVDKTFEKNAELLEQNKMKYGVYSYSMYESPKDARYEAKTLSQRAPKAAFYINDYEEQTVKSGDDETATQAWANEMRKLAGNKKILFYSYENFMLNHASNAVSSYDGYWLAAYQAEEPNREKVLWQYTNSYYSPELNQNVDANYIDENVNSSWFTS
>NZ_LT571449.1|WP_001831355.1|128002_128194_-|hypothetical-protein
MRLNLDWNKDFQEFQDILNSGIHPEWLYCAKANLVLEPAYTGEGKQFFSTQDIIKASKIIPFF
>NZ_LT571449.1|WP_002484799.1|126672_127770_+|redox-regulated-ATPase-YchF
MALTAGIVGLPNVGKSTLFNAITKAGALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQPKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRVNPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEMELRILTQIKEALEDGKPVRSIDFNEDDQKWVNQAQLLTSKKMLYMANVGEDEIGDKDNDKVKAIREYAANEDSEVIVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAWTFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAGRQRLEGKDYIMQDGDIVHFRFNV
>NZ_LT571449.1|WP_002437185.1|133855_134233_-|hypothetical-protein
MKIRLTFIILAILSTIGLVLVLAKYPTGPHTINYNEPYTVLIAITTIVIMALPALILGIFNHLACRIISAILQISALMMWGFLVIISLIMGQIVIMLMASLTILALLVSSIVTLSVHPSTSDKIN
>NZ_LT571449.1|WP_002456828.1|134452_135076_-|NDxxF-motif-lipoprotein
MKKRVITYLILALSLTLAACSNTNDNNNQEHHSNAHAPKNAKTLKEKDIFSSNKKGQKISEKEMKQALEKYLQANSDVLDNKYVMQHKLDKQSDSNPKITESQADRLSKLSNLAVKNDLHFKKFIKNNHIPEEYKDPTDRIINYFHALNSTISNVDEDIEKLNYQPQNSINVVDVATKYSGDVNKKQQDKITTFLKKKGIDTEVFNK
>NZ_LT571449.1|WP_002437172.1|135336_136860_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLQQLLELMEGDVEFVASLGSDDKSNELKELLNEMAEMSAHITITEKSLKRTPSFSVNRPGEETGITFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKGLEGPFHFETFVSLTCQKCPDVVQALNLMSVINPNITHTMIDGAVFREESENIMAVPAVFLDGQEFGNGRMTVQDILTKLGSTQDASEFNDKDPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAEHIAQYDIDTMTGIRATNIEKTDSAIRVTLENDAVLESKTVIISTGASWRKLNIPGEDRLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVKHVTLFEYASELKADSVLQERLRSLPNVDIKTSAKTTEVIGDDYVTGISYEDMTTGESQVVNLDGIFVQIGLVPNTSWLQNAVELNERGEVMINRDNATNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>NZ_LT571449.1|WP_002437170.1|136874_137444_-|peroxiredoxin
MSLINKEILPFTAQAYDPKKDEFKEVTQEDFKGSWNVVCFYPADFSFVCPTELEDLQNQYAKLQELGVNVYSVSTDTHFVHKAWHDHSDAISKLEYSMIGDPSQTITRNFDVLDEETGLAQRGTFIIDPDGVVQAAEINADGIGRDASTLVNKIKAAQYVRQHPGEVCPAKWEEGSESLQPGLDLVGKI
>NZ_LT571449.1|WP_002437166.1|137888_138668_-|hypothetical-protein
MTLTNKEVAKVLFKAYRYKKPIDFISENYQLNEEEAYHVQEELIDQLTFKDRSTVTGYKVSMTSKATQAIANTNEPAYGTLLSNQIVNDGASVSLSELFSPLLEPEIIFIVQEDLPYDADLETIRYHTRIAPGIEIPDARYKNWFPNFTLSDLISDNTATGLVVVGDPVDGLDNDAFANVHLNLYKDDKCIATGESSKVLGNPLNAIHWLIKKLHTHGKQLKKGDIISSGTFISPLKLEYGTYRAEYSGIGKVSFSVNK
>NZ_LT571449.1|WP_002455899.1|138808_139564_+|NADPH-dependent-oxidoreductase
MSDYVYELMKQHHSVRKFKNQPLGSETVEKLVEAGQSASTSSYLQTYSIIGVEDPSIKARLKEVSGQPYVLDNGYLFVFVLDYYRHHLVDEVAASNMETSYGSAEGLLVGTIDVALVAQNMAVAAEDMGYGIVYLGSLRNDVARVREILNLPDYTFPLFGMAVGEPSDEENGSPKPRLPFKHIFHKDQYDANQHQQRKELEAYDQVVSEYYKERTHGVRTENWSQQIETFLGRKTRLDMLDELKKAGFIQR
>NZ_LT571449.1|WP_001829358.1|139685_141074_-|L-cystine-transporter
MEILFTVINVIVLLVFLIMLNIMARKHVSFPKRVFTALAIGIVFGIVLHLIYGAESKTLEQSTDWFSIVGDGYVALLQMIVMPLIFISIVAAFSKIQIGEKFAKIGSYIFMFLIGTVAIAAIVGIFYALIFGLDASSIDLGSAEHSRGTEISKQAKDLTANTLPQQILEVFPSNPFLDFTGQRTTSTIAVVIFATFVGFAYLRVARKQPEHGSLLKRGIEAIYSIVMAIVTFVLRLTPYGILAIMASTLATSDFSAIWTLGKFLIASYAALITMYIIHLIILSVLGINPVKYVKKTIEVLIFAFTSRSSAGALPLNVQTQTKRLGVPEGIANFSATFGLSIGQNGCAGIYPAMLAVMVAPVANVEIDFQFVVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISIEPLIDMGRTALNVNDSMLAGTGTARLTNHWDKKTFDSNDYGDLSAN
>NZ_LT571449.1|WP_001829387.1|141382_142285_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYHLSKTEYRGREATDFKEDDIELFTDIANKVKQTNSYDLAFEELEKEKDFLQVIVKDEDSQLPTDQNVAQLVEDLRSEIQKMREERQMLGQMINQVHQQQQELKELQTDITTKLDSNAQSLKSIQNSQEAIQSAQEQQSKDIAKANELKDSELRSHFDSMSNSASISQSNVASQSTTASLSQSESANDSMSSSLSESNSITSESNTNSKSEIESKSTSTSEFLSESGSVSNSEKSESISHSQSTSATPSSQSTYQQQPKEEKKGFFARLFNL
>NZ_LT571449.1|WP_002455897.1|142410_143076_-|hypothetical-protein
MEFKVIESAKDPLFNEALKLYDDKLDIGLDEDSKIFKRSLENNKTENDYAFIVGIENQTVVSLATAHYEATTNSAFLIYLIAKESPNHDERMSLTLEAIEKQLNLLSQEVHNRDINFIMLEVPKEPSTANIDDKLRNALEHRRQFLFENQFEKQDDIDYIHPNQNQKETPQKVDLFIKANIELTKDIYGTSVKSNYILKYVFANGISREIIYPLLKEMNLR
>NZ_LT571449.1|WP_001829411.1|143203_143611_-|general-stress-protein
MAKITVVNNQDELYKVINQKKSEGYLETELAVISKSKLHLDDLHNSQISLMATSGSFSDRMSRLLTGEDGEETVLSRYDLTDNELEGYKQDILNDKMLVVANSDRSSHDEVEDNNAAYKEVDITHYAAESEGPKA

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Click the colored protein region to show detailed information

Crispr_ID: NZ_LT571449_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT571449_2

928096-928197

Unclear

Consensus_repeat	Method
TCATGTATAAGAAACACTAAATACCTATGTATTAAGTG	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_LT571449_2

>merge|NZ_LT571449|2|928096-928197|CRISPRCasFinder
TCATGTATAAGAAACACTAAATACCTATGTATTAAGTGAAAAGAGGAACACATGAGCTTGAGGTTCATGTATAAAAAACACTAAATACCTATGTATTAAGTG

>NZ_LT571449|2|2|928096-928197|CRISPRCasFinder
TCATGTATAAGAAACACTAAATACCTATGTATTAAGTG	AAAAGAGGAACACATGAGCTTGAGGT
TCATGTATAAAAAACACTAAATACCTATGTATTAAGTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT571449.1\|WP_002456579.1\|922655_924704_+\|ATP-dependent-DNA-helicase-RecG	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|236794
NZ_LT571449.1\|WP_002456573.1\|933062_934289_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_LT571449.1\|WP_001830156.1\|920404_920779_+\|Asp23/Gls24-family-envelope-stress-response-protein	unknown	unknown	gnl\|CDD\|224221
NZ_LT571449.1\|WP_002469384.1\|925424_926402_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_LT571449.1\|WP_002456580.1\|920793_922452_+\|DAK2-domain-containing-protein	unknown	unknown	gnl\|CDD\|274671
NZ_LT571449.1\|WP_001830113.1\|934653_936021_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_LT571449.1\|WP_001830184.1\|928284_928518_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_LT571449.1\|WP_002457379.1\|934290_934623_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_LT571449.1\|WP_001830107.1\|919858_920047_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_LT571449.1\|WP_001830161.1\|927322_928057_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_LT571449.1\|WP_001830099.1\|924862_925423_+\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_LT571449.1\|WP_002439483.1\|936328_936604_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_LT571449.1\|WP_001830164.1\|919140_919776_+\|thiamine-diphosphokinase	unknown	unknown	gnl\|CDD\|273588
NZ_LT571449.1\|WP_002484841.1\|929496_933066_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_LT571449.1\|WP_002436293.1\|938076_938427_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_LT571449.1\|WP_001832559.1\|936730_937234_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_LT571449.1\|WP_002456575.1\|928632_929370_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_LT571449.1\|WP_001829466.1\|937233_937971_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_LT571449.1\|WP_001830173.1\|918491_919136_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_LT571449.1\|WP_002469385.1\|926403_927330_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408

Protein	Function_ID	Function_description	E-value
NZ_LT571449.1\|WP_002456579.1\|922655_924704_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_LT571449.1\|WP_002456573.1\|933062_934289_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_LT571449.1\|WP_001830156.1\|920404_920779_+\|Asp23/Gls24-family-envelope-stress-response-protein	gnl\|CDD\|224221	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown].	1.7844e-34
NZ_LT571449.1\|WP_002469384.1\|925424_926402_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	1.20323e-175
NZ_LT571449.1\|WP_002456580.1\|920793_922452_+\|DAK2-domain-containing-protein	gnl\|CDD\|274671	TIGR03599, YloV, DAK2 domain fusion protein YloV. This model describes a protein family that contains an N-terminal DAK2 domain (pfam02734), so named because of similarity to the dihydroxyacetone kinase family family. The GTP-binding protein CgtA (a member of the obg family) is a bacterial GTPase associated with ribosome biogenesis, and it has a characteristic extension (TIGR03595) in certain lineages. This protein family described here was found, by the method of partial phylognetic profiling, to have a phylogenetic distribution strongly correlated to that of TIGR03595. This correlation implies some form of functional coupling.	0
NZ_LT571449.1\|WP_001830113.1\|934653_936021_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_LT571449.1\|WP_001830184.1\|928284_928518_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.2999e-31
NZ_LT571449.1\|WP_002457379.1\|934290_934623_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	2.69203e-43
NZ_LT571449.1\|WP_001830107.1\|919858_920047_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	1.3072e-18
NZ_LT571449.1\|WP_001830161.1\|927322_928057_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	8.64489e-139
NZ_LT571449.1\|WP_001830099.1\|924862_925423_+\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	1.79193e-99
NZ_LT571449.1\|WP_002439483.1\|936328_936604_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	4.31598e-41
NZ_LT571449.1\|WP_001830164.1\|919140_919776_+\|thiamine-diphosphokinase	gnl\|CDD\|273588	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	5.23977e-73
NZ_LT571449.1\|WP_002484841.1\|929496_933066_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_LT571449.1\|WP_002436293.1\|938076_938427_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	4.1359e-69
NZ_LT571449.1\|WP_001832559.1\|936730_937234_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.61565e-69
NZ_LT571449.1\|WP_002456575.1\|928632_929370_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	2.98269e-117
NZ_LT571449.1\|WP_001829466.1\|937233_937971_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	7.08021e-168
NZ_LT571449.1\|WP_001830173.1\|918491_919136_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	3.21388e-115
NZ_LT571449.1\|WP_002469385.1\|926403_927330_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.85618e-127

>NZ_LT571449.1|WP_001830161.1|927322_928057_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MNKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDDLKDQMLEQIPLKRFGEDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_LT571449.1|WP_002469385.1|926403_927330_+|ACP-S-malonyltransferase
MGKIAVVFPGQGAQKVGMASDLYNEEERSTRVLNLAQETVDFDLLETMFTDNDGKLGETENTQPALLTHSVALLESLNHLKVDYTMGHSLGEYSSLVSSGVLSFEDAVRIVRKRGQLMAQAFPNGVGGMAAVLGLDYDDVDKICQTLSTKEQLIEPANINSPGQIVVSGHKSLIDELVEKGKELGAKRVLPLAVSGPFHSSMMKVIEEDFANFINQFEWHNANYPVVQNVNAKGETDAEVIKRNMVKQLYSPVQFIQSTEWLINQGVDHFIEIGPGKVLSGLIKKINRDVKITSIQTLEDVKGWNNHE
>NZ_LT571449.1|WP_002469384.1|925424_926402_+|phosphate-acyltransferase-PlsX
MVKIAVDMMGGDDAPGIVLDAVKKAVEDFKDLEIILFGDESQYNLSHERIEFRHCTEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTTDGKGFVFLDVGANADAKAEHLLQYAQLGNIYAQKIRGIQNPSVSLLNIGTEAAKGNSLTKKAYDLFEKNQSFNFTGNIEAKTLMDGNVDVVVTDGYTGNMVLKNLEGTAKSIGKMLKETIMSSFKNKLAGAVLKKDLETFAKKMDYSEYGGSVLLGLDGTVVKAHGSSNAKAFYSAIRQAKIAGEENIVQIMKDTVGE
>NZ_LT571449.1|WP_001830099.1|924862_925423_+|transcription-factor-FapR
MKLKKNDRRVAIKEAIELNPFITDYELCEKFDVSIQTIRLDRTHLNIPELRKRIKLVAEQNYGRIKSIEANEIIGDLIQVNPDVSAQSLIEITIDSVFAKSEIARGHVLFAQANSLCVALIHKPIVLTHESQVEFKEKVKLNDTVRADARVIDITDKHYIIEVNSYVSDMLVFKGKFKMYYTSEDE
>NZ_LT571449.1|WP_002456579.1|922655_924704_+|ATP-dependent-DNA-helicase-RecG
MSKVHLIESPYALDKIKGIGPKRLALLEELNIKSVEDLVLYLPTRYEDNTVIDLNQADDQATVTVQGEVYSSPTVAFFGRNKSKLTVHLMINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRNKQEINGNRIFFKDQKNQEDTHLEPIYRIKEGIKQKQLRDNIRQALSDVTIHEWLTDDLREKYKLETLAYTIQTLHHPINKQNLLRARRTYAFTELFMFELRMQWLNRLEKTSDEAIEINYDINKVKQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMVPTEILAEQHAESLIQLFGNTMNVALLTGSVKGKKRRLLLEQLENGTIDCLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKTSWAKHEQYDQVLAQMSNELKKGRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSEHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVANVVEDYRMLEVARDEAAELIQSGQFFEQQYSHLREFIKQNLRHIRFD
>NZ_LT571449.1|WP_002456580.1|920793_922452_+|DAK2-domain-containing-protein
MISKINGKLFADMIIQGAQNLSNNADLVDSLNVYPVPDGDTGTNMNLTITSGREEVENNLSQNIGELGKTFSKGLLMGARGNSGVILSQLFRGFCKNIEEEKEISVQQFAESFQAGVETAYKAVMKPVEGTILTVAKDAAKAAMDYVDQAEDCVDLMAHLIEAASESLDNTPNLLAVLKEVGVVDSGGKGLLCVYEGFLKGLKGEKIEAQAPKLDTESFVNDDHDFHGVINTEDIVYGYCTEMMVRFGKNKKAFDEQEFRNDMSEFGDSLLVINDDEIVKVHVHTEHPGDVFNYGQKYGELIKLKVENMREQHREVIRKEQDGLQSKEANESKTVETAIVTISVGDGIAELFKSMGATHIISGGQTMNPSTEDIVKVIEQSQCKRAIILPNNKNIMMASEQAASIVEAETVVIPTKSIPQGISALFQYDLESSLEDNKRHMSDALETVQSGSITFAVRDTKIDGIEIKKDEFMGLAEDKIVTSDVNQFHAVKGLLSKLLNEDSEILTMISGEDADNSITNQIINWIESEYPDVEVEQHEGGQPIYQYFFAVE
>NZ_LT571449.1|WP_001830156.1|920404_920779_+|Asp23/Gls24-family-envelope-stress-response-protein
MTLEISNDYGKIDISNDVIASVVGGKAVESYGIVGMASRQQVRDGIAEILGHDNYAKGIKVREDNGIIDVDMYIIVSYGVKISEVASNLQSTVKYTLEKTLNVKVNSINIFVQGVRVNETVKKV
>NZ_LT571449.1|WP_001830107.1|919858_920047_-|50S-ribosomal-protein-L28
MGKQCFVTGRKASTGNHRSHALNANKRRWNANLQKVRILVDGKPKKVWVSARALKSGKVTRV
>NZ_LT571449.1|WP_001830164.1|919140_919776_+|thiamine-diphosphokinase
MKINLLCSQRLLPNHIFEKEKDSNWAGIDRGALILVKQGIQPIFSVGDFDSVNNEERLMLMKNLQIEPVEAEKDDTDLALGVAQAVERGYTEITIYGATGGRLDHFMGVLQILQKPQYLHQSIKIKVIDQQNHIQLLNEGKYVINRDSTYPYISFIPLNDKTILTLQGFKYNLNQEHLNLGSTLTISNEVKVNEAIIRVEQGTVLKIRSRD
>NZ_LT571449.1|WP_001830173.1|918491_919136_+|ribulose-phosphate-3-epimerase
MVKILPSLLSIDFLNLKEELQLLETAKVDGLHFDVMDGKFVPNISIGIPILDAVRQQSHLPIDVHLMIEQPENYINLFAEHGADMISVHVESTTHIHRAIEQIKQLGKKAGVVINPGTSVETILPILSIVDYVLVMTVNPGFGGQTFIEQCVTKIEQLNQLKHENHLTFDIEVDGGINDQTSKRCVEQGATMLVTGSYFFKQEDYAKVTSLLKE
>NZ_LT571449.1|WP_001830184.1|928284_928518_+|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKYINSLEK
>NZ_LT571449.1|WP_002456575.1|928632_929370_+|ribonuclease-III
MANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLFDRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMKNKKSL
>NZ_LT571449.1|WP_002484841.1|929496_933066_+|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAKMEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGESEYYLNNDRARLKDIIDLFLDSGLGKEAFSIISQGRVDEILNAKPINRRQIIEESAGVLKYKKRKAESIQKLDHTEDNLNRVEDILYDLEGRVEPLKEEAAIAKEYKQLSKEMEQSDVIVTVSDIDHYTEDNQRLDERLNHLKSQQAEKEGQQAQINQLLQKYKGKRQQNDYDIEKLNYELVKATENYEQLSGKLNVLEERKKNQSETNARYEEELDNLESQIDSIKNEKAQNEKLLADLKNKQKQLNKEVQELESLLYISDEQHDEKLEEIKNSYYTLMSEQSVVNNDIRFLEHTINENEAKKSRLDSRLVEAFNQLKDIQQNITQTQKEYQSSKKSMEKVEQNIQQLEQQLTDSKRLLSEYENKLYQAYRYNEKLKSRIDSLATQEEDYTYFFNGVKHILKAKDKELRGIHGAVAEVINVPSEMTQAIETALGASLQHVIVDNEKDGRQAIQYLKQRGLGRATFLPLNVIQPRHVAADIKDVARGSQGFINIASDAINVSAKYQNIIENLLGNTIIVENLKHANELARAIRYRTRIVTLEGDVVNPGGSMTGGGARKTKSILSQKDELSTMRNQLEDYQRQTAEFERQFKEQKTQAEQLSEQYFSASQQYNNLKEQVHHHELELDRLKTQEAHLKNEHEEFEFEKNDGYQSDKSKETLKEKQNHLIEIQQQLKQLESDIERYTQLSKEGKASTHQTQQQLHQKQSDLAVVKERIKSQKQVYERLDKQLSDSERQKIEVNEKIKLFNSDEMMGKDAFEKLKEQIQQQENVRQNLNQQLSEIKQQRKDLNEKIEINESQLQKCHQDILFIENHYQDIKAKQSKLDVLINHAIDHLNDTYQLTVERARMEYDSDETIDNLRKKVKLTKMSIDELGPVNLNAIEQFEELNERYTFLNEQRTDLREAKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGGGQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAQYLNELSTETQFIVITHRKGTMEFSDRLYGVTMQESGVSKLVSVNLNTIDEVMKEEQA
>NZ_LT571449.1|WP_002456573.1|933062_934289_+|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFSSKSEDDIQKDLDETVDSNANSDSDSMDPNDSDEQVKPKKKPKKLSEADFDEDGLISIEDFEEIEAQKIGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDYSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESYVYGLFADMIEQNEDIPEEISRNSSVESEEGN
>NZ_LT571449.1|WP_002457379.1|934290_934623_+|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQKNYLELFYLQDYSLSEIADTFEVSRQAVYDNIRRTGDLVEDYESKLRLYQRFEKRRELYNLMKQSLNQPELLKQYITQLEELE
>NZ_LT571449.1|WP_001830113.1|934653_936021_+|signal-recognition-particle-protein
MAFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERALGSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKMANKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISKPDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSDKQIDHIKAIIQSMTPKERSNPETLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKAKRNQMQNMLKGMNLPF
>NZ_LT571449.1|WP_002439483.1|936328_936604_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQLGTYNPAHVNAPEVKIDEELALKWLHDGAKPTDTVHNILSREGILKKFDEQKNAK
>NZ_LT571449.1|WP_001832559.1|936730_937234_+|ribosome-maturation-factor-RimM
MEVEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVASYRIHKGFHMLRFEGINNINEIEHLKGDYIYQERDHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINIFETGANDVWVVKGEKEYLIPYIEDVVKDIDIETKTIKITPMEGLLD
>NZ_LT571449.1|WP_001829466.1|937233_937971_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFEGVLNHSILKRAQDKGIINVNTINFRDYSINKHNQVDDYPFGGGQGMVLKPEPVFNAMEDINHNEHTRVILMCPQGRPFTQEIAQELSEAKHIVFICGHYEGYDERIRKHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNQASHQDDSFSDGLLEFPQYTRPREYKNMSVPEVLLSGNHAHIDQWRHEQKLIRTYEKRPDLLEQYPLTEKDREILETYKKKLKND
>NZ_LT571449.1|WP_002436293.1|938076_938427_+|50S-ribosomal-protein-L19
MSNHKLIEAVTKSQLRTDLPTFRSGDTLRVHVRIVEGSRERIQVFEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR

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Crispr_ID: NZ_LT571449_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT571449_3

936128-936223

Unclear

Consensus_repeat	Method
CATGCATAACCAAAAGTACGATTTACTTCGTAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT571449_3

>merge|NZ_LT571449|3|936128-936223|CRISPRCasFinder
CATGCATAACCAAAAGTACGATTTACTTCGTAAAAGAGTAGTGGAACGCCTGAGCTAAAGCACATGCATAACCAAAAGTACGATTTACTTCGTAAA

>NZ_LT571449|3|3|936128-936223|CRISPRCasFinder
CATGCATAACCAAAAGTACGATTTACTTCGTAAA	AGAGTAGTGGAACGCCTGAGCTAAAGCA
CATGCATAACCAAAAGTACGATTTACTTCGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT571449.1\|WP_001830184.1\|928284_928518_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_LT571449.1\|WP_002457379.1\|934290_934623_+\|putative-DNA-binding-protein	unknown	unknown	gnl\|CDD\|234647
NZ_LT571449.1\|WP_002469384.1\|925424_926402_+\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_LT571449.1\|WP_001830099.1\|924862_925423_+\|transcription-factor-FapR	unknown	unknown	gnl\|CDD\|179847
NZ_LT571449.1\|WP_001830113.1\|934653_936021_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_LT571449.1\|WP_002439496.1\|946227_947394_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_LT571449.1\|WP_001830161.1\|927322_928057_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|235500
NZ_LT571449.1\|WP_002456573.1\|933062_934289_+\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_LT571449.1\|WP_002439483.1\|936328_936604_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|223306
NZ_LT571449.1\|WP_001829514.1\|945349_946120_+\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_LT571449.1\|WP_002484841.1\|929496_933066_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|224117
NZ_LT571449.1\|WP_162154119.1\|944311_944461_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT571449.1\|WP_002436293.1\|938076_938427_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_LT571449.1\|WP_001832559.1\|936730_937234_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_LT571449.1\|WP_002456575.1\|928632_929370_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_LT571449.1\|WP_001829466.1\|937233_937971_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_LT571449.1\|WP_001829495.1\|944481_945345_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_LT571449.1\|WP_002469385.1\|926403_927330_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_LT571449.1\|WP_002456571.1\|941552_944153_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|370572
NZ_LT571449.1\|WP_002504748.1\|938956_941560_-\|YfhO-family-protein	unknown	unknown	gnl\|CDD\|226888

Protein	Function_ID	Function_description	E-value
NZ_LT571449.1\|WP_001830184.1\|928284_928518_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	1.2999e-31
NZ_LT571449.1\|WP_002457379.1\|934290_934623_+\|putative-DNA-binding-protein	gnl\|CDD\|234647	PRK00118, PRK00118, putative DNA-binding protein; Validated.	2.69203e-43
NZ_LT571449.1\|WP_002469384.1\|925424_926402_+\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	1.20323e-175
NZ_LT571449.1\|WP_001830099.1\|924862_925423_+\|transcription-factor-FapR	gnl\|CDD\|179847	PRK04424, PRK04424, transcription factor FapR.	1.79193e-99
NZ_LT571449.1\|WP_001830113.1\|934653_936021_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_LT571449.1\|WP_002439496.1\|946227_947394_+\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_LT571449.1\|WP_001830161.1\|927322_928057_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	8.64489e-139
NZ_LT571449.1\|WP_002456573.1\|933062_934289_+\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	0
NZ_LT571449.1\|WP_002439483.1\|936328_936604_+\|30S-ribosomal-protein-S16	gnl\|CDD\|223306	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis].	4.31598e-41
NZ_LT571449.1\|WP_001829514.1\|945349_946120_+\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	3.62396e-100
NZ_LT571449.1\|WP_002484841.1\|929496_933066_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0
NZ_LT571449.1\|WP_002436293.1\|938076_938427_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	4.1359e-69
NZ_LT571449.1\|WP_001832559.1\|936730_937234_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.61565e-69
NZ_LT571449.1\|WP_002456575.1\|928632_929370_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	2.98269e-117
NZ_LT571449.1\|WP_001829466.1\|937233_937971_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	7.08021e-168
NZ_LT571449.1\|WP_001829495.1\|944481_945345_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	7.55244e-160
NZ_LT571449.1\|WP_002469385.1\|926403_927330_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.85618e-127
NZ_LT571449.1\|WP_002456571.1\|941552_944153_-\|YfhO-family-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	5.33371e-168
NZ_LT571449.1\|WP_002504748.1\|938956_941560_-\|YfhO-family-protein	gnl\|CDD\|226888	COG4485, COG4485, Predicted membrane protein [Function unknown].	0

>NZ_LT571449.1|WP_001830113.1|934653_936021_+|signal-recognition-particle-protein
MAFEGLSDRLQATMQKMRGKGKVTEADIKTMMREVRLALLEADVNFKVVKEFVKTVSERALGSDVMQSLTPGQQVIKIVQEELTSLMGGENTSIKMANKPPTVVMMVGLQGAGKTTTAGKLALLMRKKYNKKPLLVAGDIYRPAAIDQLQTVGKQIDIPVYSEGDQVSPQQIVENALKHAKEEHLDFVIIDTAGRLHIDEALMNELQEVKEISKPDEIMLVVDAMTGQDAVNVAQSFDEQLDVSGVTLTKLDGDTRGGAALSIRSVTQKPIKFVGMSEKLDGLELFHPERMASRILGMGDVLSLIEKAQQDVDQEKAKDLEKKMRESSFTLDDFLEQLDQVKNLGPLDDIMKMIPGMNKMKGLDKLNMSDKQIDHIKAIIQSMTPKERSNPETLNVSRKKRIAKGSGRSLQEVNRLMKQFNDMKKMMKQFTGGGKGKKAKRNQMQNMLKGMNLPF
>NZ_LT571449.1|WP_002457379.1|934290_934623_+|putative-DNA-binding-protein
MGQNDLVKTLRMNYLFDFYQSLLTNKQKNYLELFYLQDYSLSEIADTFEVSRQAVYDNIRRTGDLVEDYESKLRLYQRFEKRRELYNLMKQSLNQPELLKQYITQLEELE
>NZ_LT571449.1|WP_002456573.1|933062_934289_+|signal-recognition-particle-docking-protein-FtsY
MSFFKRLKDKFSSKSEDDIQKDLDETVDSNANSDSDSMDPNDSDEQVKPKKKPKKLSEADFDEDGLISIEDFEEIEAQKIGAKFKAGLEKSRQNFQEQLNNLIARYRKVDEDFFEALEEMLITADVGFNTVMKLTDELRTEAQRRNIQETEDLREVIVEKIVEIYHQEDDYSEAMNIEDGRLNVILMVGVNGVGKTTTIGKLAYRYQQEGKKVMLAAGDTFRAGAIQQLNVWGERVGVEVVSQNEGSDPAAVVYDAINAAKNKGVDILICDTAGRLQNKSNLMQELDKMKRVINRAIPDAPHEALLCLDATTGQNALSQARSFKEVTNVSGIVLTKLDGTAKGGIVLAIRNELHIPVKYVGLGEKMDDLQPFNPESYVYGLFADMIEQNEDIPEEISRNSSVESEEGN
>NZ_LT571449.1|WP_002484841.1|929496_933066_+|chromosome-segregation-protein-SMC
MVYLKSIDAIGFKSFADHTNVQFDKGVTAIVGPNGSGKSNITDAIKWVLGEQSAKSLRGAKMEDIIFSGAEHRKAQNFAEVKLKLDNHSQKLQIDSEELVVTRRLYRSGESEYYLNNDRARLKDIIDLFLDSGLGKEAFSIISQGRVDEILNAKPINRRQIIEESAGVLKYKKRKAESIQKLDHTEDNLNRVEDILYDLEGRVEPLKEEAAIAKEYKQLSKEMEQSDVIVTVSDIDHYTEDNQRLDERLNHLKSQQAEKEGQQAQINQLLQKYKGKRQQNDYDIEKLNYELVKATENYEQLSGKLNVLEERKKNQSETNARYEEELDNLESQIDSIKNEKAQNEKLLADLKNKQKQLNKEVQELESLLYISDEQHDEKLEEIKNSYYTLMSEQSVVNNDIRFLEHTINENEAKKSRLDSRLVEAFNQLKDIQQNITQTQKEYQSSKKSMEKVEQNIQQLEQQLTDSKRLLSEYENKLYQAYRYNEKLKSRIDSLATQEEDYTYFFNGVKHILKAKDKELRGIHGAVAEVINVPSEMTQAIETALGASLQHVIVDNEKDGRQAIQYLKQRGLGRATFLPLNVIQPRHVAADIKDVARGSQGFINIASDAINVSAKYQNIIENLLGNTIIVENLKHANELARAIRYRTRIVTLEGDVVNPGGSMTGGGARKTKSILSQKDELSTMRNQLEDYQRQTAEFERQFKEQKTQAEQLSEQYFSASQQYNNLKEQVHHHELELDRLKTQEAHLKNEHEEFEFEKNDGYQSDKSKETLKEKQNHLIEIQQQLKQLESDIERYTQLSKEGKASTHQTQQQLHQKQSDLAVVKERIKSQKQVYERLDKQLSDSERQKIEVNEKIKLFNSDEMMGKDAFEKLKEQIQQQENVRQNLNQQLSEIKQQRKDLNEKIEINESQLQKCHQDILFIENHYQDIKAKQSKLDVLINHAIDHLNDTYQLTVERARMEYDSDETIDNLRKKVKLTKMSIDELGPVNLNAIEQFEELNERYTFLNEQRTDLREAKETLEQIIHEMDKEVEGRFKTTFHAVQDHFTTVFKQLFGGGQAELRLTEDDYLSAGVDIIVQPPGKKLQHLSLLSGGERALSAIALLFAILKVRSAPFVILDEVEAALDEANVIRYAQYLNELSTETQFIVITHRKGTMEFSDRLYGVTMQESGVSKLVSVNLNTIDEVMKEEQA
>NZ_LT571449.1|WP_002456575.1|928632_929370_+|ribonuclease-III
MANQKKKEMVHDFQQKFTDKMKSLGLHFKNIDLYQQAFSHSSFINDFNMNRLEHNERLEFLGDAVLELTVSRYLFDRHPHLPEGNLTKMRATIVCEPSLVIFANKIKLNELILLGKGEEKTGGRTRPSLISDAFEAFVGALYLDQGLDSVWTFAEKVIFPYVEDDELVGVVDFKTQFQEYVHSQNKGDVTYQLIKEEGPAHHRLFTSEVILENKAVAEGKGKTKKESEQKAAEQAYKLMKNKKSL
>NZ_LT571449.1|WP_001830184.1|928284_928518_+|acyl-carrier-protein
MENFDKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINTVGDAVKYINSLEK
>NZ_LT571449.1|WP_001830161.1|927322_928057_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MNKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKDKAEAVVEEIKAKGVESFAIQANVAKGDEVKEMIKEVVSQFGSVDVLVNNAGITKDNLLMRMKEQEWDDVIDTNLKGVFNCIQKVTPQMLRQRSGAIINLTSIVGAMGNPGQANYVATKAGVIGLTKTAARELASRGITVNAVAPGFIVSDMTNALSDDLKDQMLEQIPLKRFGEDTDIANTVAFLASDKAKYITGQTIHVNGGMYM
>NZ_LT571449.1|WP_002469385.1|926403_927330_+|ACP-S-malonyltransferase
MGKIAVVFPGQGAQKVGMASDLYNEEERSTRVLNLAQETVDFDLLETMFTDNDGKLGETENTQPALLTHSVALLESLNHLKVDYTMGHSLGEYSSLVSSGVLSFEDAVRIVRKRGQLMAQAFPNGVGGMAAVLGLDYDDVDKICQTLSTKEQLIEPANINSPGQIVVSGHKSLIDELVEKGKELGAKRVLPLAVSGPFHSSMMKVIEEDFANFINQFEWHNANYPVVQNVNAKGETDAEVIKRNMVKQLYSPVQFIQSTEWLINQGVDHFIEIGPGKVLSGLIKKINRDVKITSIQTLEDVKGWNNHE
>NZ_LT571449.1|WP_002469384.1|925424_926402_+|phosphate-acyltransferase-PlsX
MVKIAVDMMGGDDAPGIVLDAVKKAVEDFKDLEIILFGDESQYNLSHERIEFRHCTEKIEMEDEPVRAIKRKKDSSMVKMAEAVKSGEADGCVSAGNTGALMSAGLFIVGRIKGVARPALVVTLPTTDGKGFVFLDVGANADAKAEHLLQYAQLGNIYAQKIRGIQNPSVSLLNIGTEAAKGNSLTKKAYDLFEKNQSFNFTGNIEAKTLMDGNVDVVVTDGYTGNMVLKNLEGTAKSIGKMLKETIMSSFKNKLAGAVLKKDLETFAKKMDYSEYGGSVLLGLDGTVVKAHGSSNAKAFYSAIRQAKIAGEENIVQIMKDTVGE
>NZ_LT571449.1|WP_001830099.1|924862_925423_+|transcription-factor-FapR
MKLKKNDRRVAIKEAIELNPFITDYELCEKFDVSIQTIRLDRTHLNIPELRKRIKLVAEQNYGRIKSIEANEIIGDLIQVNPDVSAQSLIEITIDSVFAKSEIARGHVLFAQANSLCVALIHKPIVLTHESQVEFKEKVKLNDTVRADARVIDITDKHYIIEVNSYVSDMLVFKGKFKMYYTSEDE
>NZ_LT571449.1|WP_002439483.1|936328_936604_+|30S-ribosomal-protein-S16
MAVKIRLTRLGSKRNPFYRIVVADARSPRDGRIIEQLGTYNPAHVNAPEVKIDEELALKWLHDGAKPTDTVHNILSREGILKKFDEQKNAK
>NZ_LT571449.1|WP_001832559.1|936730_937234_+|ribosome-maturation-factor-RimM
MEVEVGQIVNTHGIKGEVKVKSNSDFTETRFQPGEQLLVKHNNTEIVYTVASYRIHKGFHMLRFEGINNINEIEHLKGDYIYQERDHQDIELGEHEYYYSDIIGCTVFKDDDTPIGRVINIFETGANDVWVVKGEKEYLIPYIEDVVKDIDIETKTIKITPMEGLLD
>NZ_LT571449.1|WP_001829466.1|937233_937971_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MKIDYLTLFPEMFEGVLNHSILKRAQDKGIINVNTINFRDYSINKHNQVDDYPFGGGQGMVLKPEPVFNAMEDINHNEHTRVILMCPQGRPFTQEIAQELSEAKHIVFICGHYEGYDERIRKHLVTDEISMGDYVLTGGELPAMTMTDAIVRLIPGVLGNQASHQDDSFSDGLLEFPQYTRPREYKNMSVPEVLLSGNHAHIDQWRHEQKLIRTYEKRPDLLEQYPLTEKDREILETYKKKLKND
>NZ_LT571449.1|WP_002436293.1|938076_938427_+|50S-ribosomal-protein-L19
MSNHKLIEAVTKSQLRTDLPTFRSGDTLRVHVRIVEGSRERIQVFEGVVIKRRGGGISETFTVRKISSGVGVERTFPLHTPKIEKIEVKRRGKVRRAKLYYLRSLRGKAARIQEIR
>NZ_LT571449.1|WP_002504748.1|938956_941560_-|YfhO-family-protein
MIKNIWNKPIKRFTLIVLVSCILSFILYGPFLYQFITKGIVFSGSGDGFRQMMPFQMYLYEHFTSLKGFYDASFGLGGDYVKSLAYYYSLSPLMWINFSMIWILEQTINVNPHDISFWPINQLIMAYVRTVITFIFSFYLFSYLRLKPAPMFIATILYGMSTVVTYYNFTWSFYGNLLIMLPMSLWAIERFFKERKIGWFIFAIAYTLFSNFYFSYYEAIVIGFYFIYRFAIPHEKDIVNRWQKLYILVCATLLSVLVSIYGLYTGISSFLDNDRAQNPNFKITFFTNLFETNYNIFADGFYITISFIAIIALFCFKLYQHYYYKLFAIATWILLIGSFSQWFDSAFNGFSLPQRRWVYFLALSTSVLIALFIQHLSEISIKEYTFVAIPVFIYGFIFIALSERSVKWMFVALILIIVLFIFIKYKSLLTRTSMMVLLVVLFLAQQVLMTNDSRKITIEPYQTTIKTINDSNYRSPVLNKKIKYMHQSSTDPLKRLDYFSYYALNSPLIYHYNGTSLYSSIFDGDILKYYDQTLQINMPVDKNSTYRYLNNRANLMSLWDVQDRLRHPDDLNMPYGFKKKELITDKKDQWIHSVNTINYPSAHITNKIYDARKLKSPLDREQAMLKGVVLNHKSQANTDFKPNPNLLSNAKQNLNHANWIDSKHLKVKQHNGGVTLNLPRNIVKNYKDMYIEMDVELLSPDKEHKVGVNEYSQERNRLSYKYRRFVSPVTMRAKASNQLNIKMSKGVYRFKVKGIYGENYQTLKKASQQLQPVKVKKERNGFTIIKKKKEHGYLVLPMVYAKGMHAMANGKPLKVQQGNGIMTTIPVKEGQTKIKLSYTPPYFYLLITVSCIGIILSILFTHYVKRK
>NZ_LT571449.1|WP_002456571.1|941552_944153_-|YfhO-family-protein
MRRKACFIILLITLSLIGHSYIIFRFHHDGVLSTGPNDGMEQMIPIQMYLYHQWTQGNLFYSTHLGLGGDFFTDLSYYFSTNLIFILNVPIIKLCEIFFSLNTNQILLWMYNALIVSIIKSTIALFCTYLFSYYISKNKIISLLISFIFVMSPLYFRFTIYWPFFSDTFIWLPLLLLGIERLLRDFKAGLFILTVSLILINNFYFAYYFLIIGIGYTLIRIIYRHPKDSLTRWQASLTIICSALLALGNSMFVFFHGVQSFLNNRRQSFTGQVNWIEHLNKDTNIFFDNYLIVVIFLSIQALLTIKLYKHFYYKLFALLLLATIIFAFLPFVDQLFNGFSAPQKRWHFILAFNSSILIGLFVKYFKTIRPKTYIYTNLIAQSVIYISSISYNTFLPWLSLVPVVSVIGLLILLIKEKKVRYYLTYLYSISIAALSLMITFVFIKNQIFFQDHINRANKRYINSSFYNSAIQRSLVKEMNQTKNDDQRINWRVDEQDNTPMYQNFKGLSIYSSIFHHNILDFYYDALKINLAEESVSRYQSTNARQNIESLFSVKYLMMKDYQNFIPSYFKKVKSRGQYIIYKNQLPLPSVKVTQNIYNHKSLKKPIDREHAMINGAIVTSKGTAYHSKVKNLLDQTRVSTQNITRYSNNELTVNKESGIIKLHLPKNIRDKYKDFYLTMNIKRGDPDSNYTVSINQYHNHRLYNDSIYRTGISKVLYRSLPDKNGDITIQLSPKGKFNLELLELNGENYDTLKQAHHHANFNMRYKDIKNGVKVNLDHHSKGLAVINIPYRKGMRAYVDDRQSNIKKVNYMMTGVPVNKNDKTITIQYRPPFLKTMFSISIFSIVVSIVFIRLKNIRKRKMRIRHD
>NZ_LT571449.1|WP_162154119.1|944311_944461_+|hypothetical-protein
MNKFTNSHRRFFMNRKMIFILNDARVKLKVVGLAIIKYNYEVIDKSLRK
>NZ_LT571449.1|WP_001829495.1|944481_945345_+|ribosome-biogenesis-GTPase-YlqF
MAIQWYPGHMAKAKRQVSEQLKKVDVVFELVDARIPYSSRNPMIDDVIKQKPRVVILNKKDMTNLKELEKWEIYFKNEGFYPVAVDAKHGKNLKNVEVEAIKATQEKFDREKAKGLKPRAIRAMIVGIPNVGKSTLINKLAKRSIAETGNKPGVTKQQQWIKVGKSLQLLDTPGILWPKFEDEEVGKKLSLTGAIKDSIVHLDEVAIYGLNFMIKHDVSALKRHYNIDTHEDAEILDWFDAIGRRRGLLQKGNEVDYESVIELIINDMRNAKIGTYCFDILKEMKSE
>NZ_LT571449.1|WP_001829514.1|945349_946120_+|ribonuclease-HII
MSLTIKEIKEKLSRIETLEELHKHEANNDSRKGVINAIKSREKNILKQQALEEHYLSMNQYENNIMSSNRDALICGIDEVGRGPLAGPVVACAVILEKNHHYIGLDDSKKVSPKNRARLNQNLKENVYQYAYGIASSVEIDELNIYRATQLAMLRAINQLDVTPTHLLIDAMTLDIDIPQTSIIKGDAKSVSIAAASIMAKEYRDQYMRQLSKQFPEYGFDKNAGYGTKQHLKAIDQVGIINEHRQSFEPIKSMMK
>NZ_LT571449.1|WP_002439496.1|946227_947394_+|ADP-forming-succinate--CoA-ligase-subunit-beta
MNIHEYQGKEIFRSMGVAVPEGRVAFTAEEAVEKAKELNSDVYVVKAQIHAGGRGKAGGVKIAKSLSEVETYANELLGKQLVTHQTGPEGKEVKRLYIEEGCDIQKEYYVGFVIDRATDKVTLMASEEGGTEIEEVAAQTPEKIFKETIDPVVGLSPYQARRIAFNINIPKESVGKATKFLLALYNVFIEKDCSIVEINPLVTTGDGQVLALDAKLNFDDNALFRHKDILELRDLEEEDPKEIEASKYDLSYIALDGDIGCMVNGAGLAMATMDTINHFGGNPANFLDVGGGATKEKVTEAFKIILGDDNVKGIFVNIFGGIMKCDVIAEGIVAAVKEVELTLPLVVRLEGTNVERGKAILNESGLAIEPAATMAEGAQKIVKLVKEA

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Crispr_ID: NZ_LT571449_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT571449_4

2323764-2323847

Orphan

Consensus_repeat	Method
CAACTTGCCTTGTCCGTGGAATTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT571449_4

>merge|NZ_LT571449|4|2323764-2323847|CRISPRCasFinder
CAACTTGCCTTGTCCGTGGAATTTCTCGGTGAAATTCTCTTTGTTGGGGCCCCGAACCCCAACTTGCCTTGTCCGTAGAATTTC

>NZ_LT571449|4|4|2323764-2323847|CRISPRCasFinder
CAACTTGCCTTGTCCGTGGAATTTC	TCGGTGAAATTCTCTTTGTTGGGGCCCCGAACCC
CAACTTGCCTTGTCCGTAGAATTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT571449.1\|WP_002484437.1\|2318462_2319512_+\|membrane-protein	unknown	unknown	gnl\|CDD\|226458
NZ_LT571449.1\|WP_001831599.1\|2329640_2330252_-\|class-A-sortase-SrtA	unknown	unknown	gnl\|CDD\|130148
NZ_LT571449.1\|WP_001832363.1\|2333422_2334322_-\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha	unknown	unknown	gnl\|CDD\|129801
NZ_LT571449.1\|WP_002493287.1\|2334334_2335015_-\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	unknown	unknown	gnl\|CDD\|224674
NZ_LT571449.1\|WP_001831616.1\|2312240_2313239_+\|thiazole-biosynthesis-adenylyltransferase-ThiF	unknown	unknown	gnl\|CDD\|274094
NZ_LT571449.1\|WP_001832881.1\|2314134_2316099_+\|fructose-1,6-bisphosphatase	unknown	unknown	gnl\|CDD\|226373
NZ_LT571449.1\|WP_001831506.1\|2311471_2312239_+\|thiazole-synthase	unknown	unknown	gnl\|CDD\|234687
NZ_LT571449.1\|WP_001831422.1\|2328487_2329297_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_LT571449.1\|WP_002456688.1\|2324529_2326023_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143435
NZ_LT571449.1\|WP_001831584.1\|2313346_2313961_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_LT571449.1\|WP_002438139.1\|2330975_2331152_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT571449.1\|WP_001831463.1\|2330417_2330912_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_LT571449.1\|WP_162139016.1\|2331495_2331633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT571449.1\|WP_001831598.1\|2319760_2321185_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143407
NZ_LT571449.1\|WP_001831461.1\|2321255_2322203_-\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238499
NZ_LT571449.1\|WP_002484434.1\|2322912_2323701_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|225312
NZ_LT571449.1\|WP_153801572.1\|2331862_2333041_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_LT571449.1\|WP_001831535.1\|2322369_2322651_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379642
NZ_LT571449.1\|WP_002484424.1\|2327308_2328301_+\|D-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|183550
NZ_LT571449.1\|WP_001831423.1\|2316327_2318115_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104

Protein	Function_ID	Function_description	E-value
NZ_LT571449.1\|WP_002484437.1\|2318462_2319512_+\|membrane-protein	gnl\|CDD\|226458	COG3949, COG3949, Uncharacterized membrane protein [Function unknown].	9.57735e-87
NZ_LT571449.1\|WP_001831599.1\|2329640_2330252_-\|class-A-sortase-SrtA	gnl\|CDD\|130148	TIGR01076, Uncharacterized_protein_YhcS, LPXTG-site transpeptidase (sortase) family protein. This family includes Staphylococcus aureus sortase, a transpeptidase that attaches surface proteins by the Thr of an LPXTG motif to the cell wall. It also includes a protein required for correct assembly of an LPXTG-containing fimbrial protein, a set of homologous proteins from Streptococcus pneumoniae, in which LPXTG proteins are common. However, related proteins are found in Bacillus subtilis and Methanobacterium thermoautotrophicum, in which LPXTG-mediated cell wall attachment is not known. [Cell envelope, Other, Protein fate, Protein and peptide secretion and trafficking].	1.43034e-42
NZ_LT571449.1\|WP_001832363.1\|2333422_2334322_-\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha	gnl\|CDD\|129801	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit. This enzyme is also called serine deaminase. L-serine dehydratase converts serine into pyruvate in the gluconeogenesis pathway from serine. This model describes the alpha chain of an iron-sulfur-dependent L-serine dehydratase, found in Bacillus subtilis. A fairly deep split in a UPGMA tree separates members of this family of alpha chains from the homologous region of single chain forms such as found in Escherichia coli. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	8.36299e-108
NZ_LT571449.1\|WP_002493287.1\|2334334_2335015_-\|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta	gnl\|CDD\|224674	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism].	1.3129e-54
NZ_LT571449.1\|WP_001831616.1\|2312240_2313239_+\|thiazole-biosynthesis-adenylyltransferase-ThiF	gnl\|CDD\|274094	TIGR02356, molybdopterin_biosynthesis_protein_moeB, thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. [Biosynthesis of cofactors, prosthetic groups, and carriers, Thiamine].	3.34753e-109
NZ_LT571449.1\|WP_001832881.1\|2314134_2316099_+\|fructose-1,6-bisphosphatase	gnl\|CDD\|226373	COG3855, Fbp, Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism].	0
NZ_LT571449.1\|WP_001831506.1\|2311471_2312239_+\|thiazole-synthase	gnl\|CDD\|234687	PRK00208, thiG, thiazole synthase; Reviewed.	3.65912e-146
NZ_LT571449.1\|WP_001831422.1\|2328487_2329297_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.03989e-48
NZ_LT571449.1\|WP_002456688.1\|2324529_2326023_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143435	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.	0
NZ_LT571449.1\|WP_001831584.1\|2313346_2313961_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.68558e-44
NZ_LT571449.1\|WP_001831463.1\|2330417_2330912_+\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	8.8583e-62
NZ_LT571449.1\|WP_001831598.1\|2319760_2321185_+\|aldehyde-dehydrogenase	gnl\|CDD\|143407	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.	0
NZ_LT571449.1\|WP_001831461.1\|2321255_2322203_-\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	1.52754e-112
NZ_LT571449.1\|WP_002484434.1\|2322912_2323701_+\|VOC-family-protein	gnl\|CDD\|225312	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only].	2.27772e-97
NZ_LT571449.1\|WP_153801572.1\|2331862_2333041_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	7.67754e-19
NZ_LT571449.1\|WP_001831535.1\|2322369_2322651_+\|N-acetyltransferase	gnl\|CDD\|379642	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase. This family of GCN5-related N-acetyl-transferases bind both CoA and acetyl-CoA. They are characterized by highly conserved glycine, a cysteine residue in the acetyl-CoA binding site near the acetyl group, their small size compared with other GNATs and a lack of of an obvious substrate-binding site. It is proposed that they transfer an acetyl group from acetyl-CoA to one or more unidentified aliphatic amines via an acetyl (cysteine) enzyme intermediate. The substrate might be another macromolecule.	1.79195e-31
NZ_LT571449.1\|WP_002484424.1\|2327308_2328301_+\|D-lactate-dehydrogenase	gnl\|CDD\|183550	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional.	0
NZ_LT571449.1\|WP_001831423.1\|2316327_2318115_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	1.72739e-43

>NZ_LT571449.1|WP_002484434.1|2322912_2323701_+|VOC-family-protein
MTNFHSIDATQVTNVTLNVKDLNKSTDFYSNVLGFSIEKQTNQQTVFNIGNLGYTLTLNELNNGRQPEFREAGLFHVAYLLPTRSDLADFLYHANNLNIAMGGGDHLVSEALYFTDPEGNGIEVYHDRPSEDWVWRDGFVKMDTLEVNVNDLMAQRSNEGWPEEGKIGHLHLKTHNLESAYEFYVEKLGFEHISNFPQALFMSTQKYHHHIATNTWQSNKIRTQNEQTYGLCHFDIYQPNANTTHVTSPEGFDITIHGNETK
>NZ_LT571449.1|WP_001831535.1|2322369_2322651_+|N-acetyltransferase
MAAEIKQGDHKFYVGNDENNPKAVITFKEVDNNEIDIDHTGVSDELGGQGLGKKLVNRVVEHARENNLKIIASCPFAKNVLEKDDHAQDVYLG
>NZ_LT571449.1|WP_001831461.1|2321255_2322203_-|zinc-ABC-transporter-substrate-binding-protein
MKKLIIVSIIILMLSGCSSFDHRKRESINDKNKMKVYTTVYAFQSLTQQIGGKYVDAQSIYPAGADLHSYEPTQKDMIDIAKSDLFVYSSHQLDPVAAKITNSMTNNSMKLALAEGLKQSDFIHSKDHDENHEHHSHHEESNQDPHVWLDPVLNQKFAFMIKEKLIEKDPKHQAYYNKNYKIVNKDIVHIDQQLQSITKHYKRDKVVISHDSLGYLAHRYGFKEQGVKGMNDEEPSQKEILNIVKDIQHSHAPYVLYEQNITSKITDVIKKETDTKPLSFHNLAVLTKEEQNDDSISYQSLMKKNIYVLNRALNN
>NZ_LT571449.1|WP_001831598.1|2319760_2321185_+|aldehyde-dehydrogenase
MTNQLFINNEFIESQSKETMDVINPATGEAFDTITLATEEEVNDAIEKSQQAQLEWERVPQPTRAEHVKLLIPLLEKNRDQIAQLYVKEQGKTLAQAYGEIDKSISFIDYMTSLSMSDKGRVLQNSIANETIQIINKPIGVTAGIVPWNAPILVLMRKVIPAIVTGCSVVIKPSEETTLLTLRLAELFRASTIPAGLIQIVPGTGETVGTQLASHKDIQLISLTGSMRAGKSVYENAAQTVKKVNLELGGNAPVIVTSNADLDKAVNYIVTARINNAGQVCTCPERIFVHEDVHDDFLNKVTSKMKSLTVGDPFDENTDYGAIINQKQLDSIHEKVQDAIKNGATLMTGGHQLKRHGFFYAPTVLDNVRKDYNVFKDEIFGPVLAITTYRDFEQVIEDANDTNAGLSSYIFSENLTEVMTATERLKFGEVYANCEAEEVVNGYHAGWRESGLGGADGIHGFEEYYNTTVSYIRY
>NZ_LT571449.1|WP_002484437.1|2318462_2319512_+|membrane-protein
MSNVKESIIVAFAFVGVVVGAGFATGQEIFQFFTSHGIYSIGGIFITGLIITLGGIFVLNTGFRLRSQNHSESIRYYLHPTIAKLFDIILTVFLFSLAIIMTAGGASTINESFGLPFWLSSLILVILILLTLFLKFDRLIAVLGGVTPFLVAVVVMIAVYYFITGDLNFSDVSQYSNQNKSISPGWWFDAINYASLQIAAAFSFLTVMGGKLRYQSSTIYGGLIGGIIVTLLLLLINFGLVTEFNQIKEVALPSLLLAKQISPSIGIIMSVIMVLVIYNTVVGLMYAFASRFSRPFTKRYYILIVMMAIITFACTFVGFISLIGKVFPIMGLFGFILLIPVIYKGILRK
>NZ_LT571449.1|WP_001831423.1|2316327_2318115_-|sodium:proton-antiporter
MSLELPVMLTIVLFLALGIFSQWLASRIKWPSIVVMAIVGLLVGPIFGLANPKEALGPEAFSSIVSLAVAIILFEGSSNLDFRELKGISKAVIRIITIGAGIAWILGAIALHVTMNFPLSISFVIGGLFLITGPTVIQPLLKQAKVKRNVDSVLRWESIILDPIGPIIALTAFYVFQIFEEGIGFVVIILFILKLLAAILIGFGAAFLFNWLIGQDKIPQSLMPPIQFVFILLTFSICDEILSESGLLAVTIFGLMMARKKRHDLIFKESDHFIDNASSILVSTVFILITSSLTKDVLLNVLSWQLILFSLVMIVLVRPISVLLSTLGTEITKKERAVVALMAPRGIVVLTVAQFFSSLFMDDKIPMAQYITPVTFGLVFITVVIYGFGFTPLSKLFGVASTEPPGVIIVGESEFSFHLGINLRDHGIPVMMFNLFENTSEKAHEAGFEVFKGNLLSSNDRIYSDLLRYNKCILMTQSFIFNSLAFNELVPEFGLNNVDMMPVSFNDEQARNNLNGPIRNHILFDENHTPRWFNQFITQHNIVEVPAEDYEKITENDMLIYHINEDKEVTFKRSNRDIPEHETGVYGILKNAYLT
>NZ_LT571449.1|WP_001832881.1|2314134_2316099_+|fructose-1,6-bisphosphatase
MTHITESEMKQKYLDLLSQKFDSAEKLATEIINLESILELPKGTEHFVSDLHGEYESFQHVLRNGSGNVRAKINDIFKDKLSQQEINDLAALVYYPEEKLKLVKNNFDSIGTLNIWYITTIQRLIDLITYCSSKYTRSKLRKALPEQYVYIIEELLYKSNEFHNKKPYYETLVNQIIELEQSDDLIIGLSYTVQRLVVDHLHVVGDIYDRGPKPDKIMDTLINYHSVDIQWGNHDVLWIGAYAGSKVCLANLLRICARYDNLDIIEDAYGINLRPLLTLAEKYYDAENPAFKPKKRPDKDVSLTKREESQITKIHQAIAMIQFKLEMPIIKRRPSFEMEERLVLEKIDYDNNEITIYNKTYPLKDTCFQTVNPNNPAELLAEEKEVMDKLLLSFQQSEKLRRHMSFLMRKGKLYLPYNGNLLIHGCIPVDENGEMESFEIEGERLSGRELLDVFEYHVRKAFDHKESTEDISTDLVWYLWTGKYSSLFGKRAMTTFERYFIEDKASHKEEKNPYYYLREDVDMIRKMLKDFGLNPDEGRIINGHTPVKEIDGEDPIKANGKMLVIDGGFSKAYQSTTGIAGYTLLYNSFGMQLVAHKEFNRKEKVLSMGADELSVKRVVDEELQRKKIRDTNIGKQLQDQIDILKILMHDRYLT
>NZ_LT571449.1|WP_001831584.1|2313346_2313961_+|DedA-family-protein
MEQIITDFISKWGYTAIFILILLENVLPVVPSEIILTFAGLLSVKSHLSIWTLLIIATIASFIGLLILYYICRLISEEKLYRFVDRHGKWMKLKSKDLKRANDWFKKYGAWAVFLCRFVPVLRVLITIPAGINRMNVIQFTTLSLIGTTIWNFALILLGRLLSDSFDALMNGIHTYSRIMYVIIIIAVIYFVIRYLMKRRRSVK
>NZ_LT571449.1|WP_001831616.1|2312240_2313239_+|thiazole-biosynthesis-adenylyltransferase-ThiF
MSRYERQTRFAPFGEEGQQKLSSSQILIFGAGALGSHIVDQLARMGAHHIAIVDMDIVEISNLHRQTLFDEEDAHTLISKVEAIKHKVNQININVNLTTYDLEVTSSNIENLIKNVEPDIIIDGMDNFKIRYLINEVCHKYQIPWVYGAAVGSKGSVYGIDHQGPCLKCLLQTIPDTGESCAINGVIPPVISMIASYEVAEAVRYLSGKGFSKQLITIDAFNINYKSMNVDALKNKDCPVCEKHEYTLLESQQERTIEDLCGNAYLFRFPPKAFKHAAHFPGNMVKSTSFAKLIQYQTYEFTLFKDGRMNAYGIHNDEEAHHLYNTLLKSIR
>NZ_LT571449.1|WP_001831506.1|2311471_2312239_+|thiazole-synthase
MFKIGNLELQSRLLLGTGKFENEEVQSKAIEASETNVLTFAVRRMNLYDRNLPNPLANVNLKDFITFPNTAGAKTAQEAIRIAEIANHAGVCDMIKVEVIGDDETLLPDPFETYEACKVLLEKGYTVCPYISNDLVLAQRLEELGVHAVMPLASPIGTGRGINNPLNLSYIIENASVPVIVDAGIGSPKDACHAMELGADGILLNTAISAAKDPVKMAEAMKLGINAGRLSYEAGRIPVKYTAQASSPSEGLGFL
>NZ_LT571449.1|WP_002456688.1|2324529_2326023_-|aldehyde-dehydrogenase-family-protein
MTNINVRNYIDESYGLFINNEFQASDSGETLTVSNPANGEDLAKVARAGKKDVDKAVQAAHDAFDSWSKISKEERADYLLEISRRIHEKTEHLATVESLQNGKPYRETSTIDVPQAANQFKYFASVLTTDEGSVNEIDQNTMSLVVNEPVGVVGAVVAWNFPILLASWKLGPALAAGNTVVIQPSSSTPLSLIELAKIFQEVLPKGVVNVLTGKGSESGDAIFHHEGVDKLSFTGSTDVGYGVAQAGAERIVPTTLELGGKSANIIFDDANLEQVIEGVQLGILFNQGEVCSAGSRLLVQSSIYNELLPKLKEAFENIKVGDPFDEDTKMSAQTGPEQLDKIESYIKIAEEDDKANILTGGHRITDNGLDKGYFFEPTIIEINDNKHQLAQEEIFGPVVVVEKFDDEQEAIEIANDSEYGLAGGIFTTDIHRALNVAKAMRTGRIWINTYNQIPAGAPFGGYKKSGIGREVYKDAIKNYQQVKNIFIDTSNQTKGLY
>NZ_LT571449.1|WP_002484424.1|2327308_2328301_+|D-lactate-dehydrogenase
MTKIMFFGTRAYEKDMALRWGKKNNIDVTTSKELLSVDTVDQLKDYDGVTTMQFGKLESEVYPKLESYGIKQIAQRTAGFDMYDLELAKKHGIIISNIPSYSPETIAEYSVSIALQLVRKFPTIEKRVQAHNFTWASPIMSRPVKNMTVAIIGTGRIGAATGKIYAGFGAKVVGYDAYPNHSLSFLEYKETVEDAIKDADIISLHVPANKDSFHLFDNNMFKKVKKGAVLVNAARGAVINTPDLIEAVNNGTLSGAAIDTYENEANYFTFDWSNQTIEDPILLELIRNENILVTPHIAFFSDEAVQNLVEGGLNAALSVINTGTCDTRLN
>NZ_LT571449.1|WP_001831422.1|2328487_2329297_-|HAD-family-hydrolase
MIKAIAVDMDGTFLDTNKQFDRNRFETIFKELIDKNIKFVAASGNQFAKLKSIFGDREMFFISENGAVIYKGNQLYNYRSFDQYIFQKVVNYLNLNQKINNLIICGVKSAYILKETSEAFKQDARTYYHQLIEIDSLQTLPDDDYVKIAFNINRQTHPDLDEKLALKFKEDIKLVSSGRDSIDVIMPNMTKGQALSRLLKEWQMPASHLMAFGDANNDKDMLELAEHSYVMANSEDKSLFNIARHVAPSNDEQGVLSTIENVVLGYSNK
>NZ_LT571449.1|WP_001831599.1|2329640_2330252_-|class-A-sortase-SrtA
MKQWMNRLITLIGVLLIILAIYLFSKPYIDNYLHEKDNDHKIENYDKKEKEQTKTSKSTPKIPSDKSKMAGYIEVPDAQIKEPVYPGPATPEQLNRGVSFAEGDESLNQQNISIAGHTFTDRSHYQFTNLKSAKIGSKVYFKTGNQTRKYKITKIRDVKPTEVKVLDEHPNKKNQLTLITCDDYNEETGVWETRKIFIATQIN
>NZ_LT571449.1|WP_001831463.1|2330417_2330912_+|N-acetyltransferase
MIRFARLEDLQDILTIYNDAILNTTAVYTYKPQQLDERLQWYQSKAKINEPIWVYEKEGKVVGFATYGSFRQWPAYLYTIEHSIYVHQQYRGLGIASQLLENLIRYAKEQSYRTIVAGIDASNMDSIALHKKFDFSHAGTIKNVGYKFGRWLDLSFYQYDLSDS
>NZ_LT571449.1|WP_002438139.1|2330975_2331152_-|hypothetical-protein
MLRLFLIFIAFIINTTITYLWTIEGTWPNLLFKSLSLSMIIVFMFYYIRFVIENKKED
>NZ_LT571449.1|WP_162139016.1|2331495_2331633_+|hypothetical-protein
MTQHTLPMESSVLIPTNNISRHVNDIAETIPDTEFDEFRHYRGLI
>NZ_LT571449.1|WP_153801572.1|2331862_2333041_-|IS110-family-transposase
MSKRSSVVAHYKNGKFQKEFFIQNNKNGYNYLLKYLNDLHHPQLIFESTGIYSRGMERFCCVNQINYIQMNPLEAKFKTSALRSWKTDQADAHKLACLGPTLKQTGNLPIHELIFFELRERVRFHLEIENEQNRLKFQILELLHQTFPGLERLFSSRYSIIALNIAEIFTHPDMVLDIDKDVLITHIFNSTDKGMSMDKATKYALQLRVIAQESYPNVDRHSFLVEKLRLLIQQLKQSIHHLKQLDDAMIQLAQQLDYFENIHSIPGIGKLSTAMIIGEIGDIKRFKSNKQLNTFVGIDIKRYQSGHTHCSDTINKRGNKKARKLLFWVIMNIIRGQHHYDNHVVDYYYKLRKQPNEKPHKTAIIACINRLLKTIHYLVMNHKLYDYQMSPH
>NZ_LT571449.1|WP_001832363.1|2333422_2334322_-|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-alpha
MFDSIRETIDYSVENNISFADMMINDEMEREGKSREEVRDLMRQNLNVMREAVEKGTTGDGVESVTGYTGHDAAKLRDYNENNHALSGHEMIDAVKGAVATNEVNAAMGIICATPTAGSSGTIPGVIFKLEKTHNITEDQMIDFLFTSALFGRVVANNASVAGATGGCQAEVGSASAMAAAAAVSIFNGSPEQSGHAMALAISNLLGLVCDPVAGLVEIPCVMRNAIGSGNALISADLALAGVESQIPVDEVIGAMDRVGRNLPASLRETGLGGLAGTPTGEEIKRKIFGEADNMVKNK
>NZ_LT571449.1|WP_002493287.1|2334334_2335015_-|L-serine-ammonia-lyase,-iron-sulfur-dependent,-subunit-beta
MAKSYDYQSAFDIIGPVMMGPSSSHTAGAVKIGNSARAVLGDMPKHIEIRYYESFAKTHQGHGTDVAIVGGAMGYSTFDSRIKSSLDIAKDENITIDIIEDEGESIGQHPNCAYIKANTKDGRYIEVIGISIGGGTIKLKGINVNGLNVELNHGLPMLVIDGNMNKAKINHLINDLSDMDLDLGEELIETNDNEGLVVFPLNKAISESALNIIKDKHSDLNVSYIK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_LT571449.1	194089-194114	2	0.923
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_LT571449.1	415321-415346	2	0.923
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_LT571449.1	1400283-1400308	2	0.923
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_LT571449.1	1400341-1400366	2	0.923
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_LT571449.1	1673350-1673375	2	0.923
NZ_LT571449_4	4.1\|2323789\|34\|NZ_LT571449\|CRISPRCasFinder	2323789-2323822	34	NZ_LT571449.1	1431722-1431755	2	0.941

1. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to position: 194089-194114, mismatch: 2, identity: 0.923

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaattcaacagacaaagcaagttg	Protospacer
************..************

2. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to position: 415321-415346, mismatch: 2, identity: 0.923

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaattcaacaggcaaagcaggttg	Protospacer
************.********.****

3. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to position: 1400283-1400308, mismatch: 2, identity: 0.923

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaattcaacaggcagagcaagttg	Protospacer
************.***.*********

4. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to position: 1400341-1400366, mismatch: 2, identity: 0.923

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaattcaacaggcagagcaagttg	Protospacer
************.***.*********

5. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to position: 1673350-1673375, mismatch: 2, identity: 0.923

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaattcaacagacaaagcaagttg	Protospacer
************..************

6. spacer 4.1|2323789|34|NZ_LT571449|CRISPRCasFinder matches to position: 1431722-1431755, mismatch: 2, identity: 0.941

tcggtgaaattctctttgttggggccccgaaccc	CRISPR spacer
tcagtgaaattctttttgttggggccccgaaccc	Protospacer
**.**********.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	MN369743	Streptomyces phage Tribute, complete genome	80738-80763	4	0.846
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	MT310865	Streptomyces phage Bmoc, complete genome	78515-78540	4	0.846
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	MH576968	Streptomyces phage Wofford, complete genome	80704-80729	4	0.846
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	MF358542	Streptomyces phage Sushi23, complete genome	80852-80877	4	0.846
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	MK494112	Streptomyces phage EGole, complete genome	81544-81569	4	0.846
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	MF347639	Streptomyces phage Samisti12, complete genome	81875-81900	4	0.846
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	NC_042011	Streptomyces phage Peebs, complete genome	80496-80521	4	0.846
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	MN694088	Marine virus AFVG_250M454, complete genome	24350-24375	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	MN694007	Marine virus AFVG_250M456, complete genome	24395-24420	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	MN694027	Marine virus AFVG_250M455, complete genome	27746-27771	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP034911	Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence	337057-337082	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP040783	Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence	80159-80184	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NC_020394	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence	137021-137046	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	280870-280895	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	622506-622531	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP020005	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence	75068-75093	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	414799-414824	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	497401-497426	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	454459-454484	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	88318-88343	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_AP014865	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence	382031-382056	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	247116-247141	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	CP046512	Bacillus cereus strain JHU plasmid p1, complete sequence	459206-459231	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	513161-513186	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	258661-258686	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	310868-310893	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	236022-236047	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	500606-500631	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	543660-543685	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	374432-374457	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	314629-314654	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	5344-5369	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	124811-124836	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	330728-330753	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	377266-377291	5	0.808
NZ_LT571449_1	1.1\|133768\|26\|NZ_LT571449\|CRISPRCasFinder	133768-133793	26	MN693811	Marine virus AFVG_250M463, complete genome	40836-40861	5	0.808
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	NZ_CP020749	Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence	9314-9339	5	0.808
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	CP024687	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence	200447-200472	5	0.808
NZ_LT571449_2	2.1\|928134\|26\|NZ_LT571449\|CRISPRCasFinder	928134-928159	26	MF358541	Streptomyces phage Warpy, complete genome	80974-80999	5	0.808

1. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to MN369743 (Streptomyces phage Tribute, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

2. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to MT310865 (Streptomyces phage Bmoc, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcg	Protospacer
**.*********** *********

3. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to MH576968 (Streptomyces phage Wofford, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aaatgaggaacacaggagcttgagca	Protospacer
*** ********** *********

4. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to MF358542 (Streptomyces phage Sushi23, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

5. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to MK494112 (Streptomyces phage EGole, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

6. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to MF347639 (Streptomyces phage Samisti12, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

7. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to NC_042011 (Streptomyces phage Peebs, complete genome) position: , mismatch: 4, identity: 0.846

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aagagaggaacacaggagcttgagcc	Protospacer
**.*********** ********* .

8. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to MN694088 (Marine virus AFVG_250M454, complete genome) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
tttaattcaacaagcaaagcaactta	Protospacer
   ******************* **.

9. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to MN694007 (Marine virus AFVG_250M456, complete genome) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
tttaattcaacaagcaaagcaactta	Protospacer
   ******************* **.

10. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to MN694027 (Marine virus AFVG_250M455, complete genome) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
tttaattcaacaagcaaagcaactta	Protospacer
   ******************* **.

11. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaattcaaaaggcaaagcaagcaa	Protospacer
********** *.**********. .

12. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP040783 (Bacillus thuringiensis strain HM-311 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

13. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NC_020394 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-233, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

14. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

15. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

16. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

17. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

18. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

19. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

20. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

21. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_AP014865 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

22. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

23. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to CP046512 (Bacillus cereus strain JHU plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

24. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

25. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

26. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

27. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

28. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagagc	Protospacer
****** ***********.****

29. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

30. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

31. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

32. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

33. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

34. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

35. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agaaatacaacaagcaaaacaagacc	Protospacer
****** ***********.**** .

36. spacer 1.1|133768|26|NZ_LT571449|CRISPRCasFinder matches to MN693811 (Marine virus AFVG_250M463, complete genome) position: , mismatch: 5, identity: 0.808

agaaattcaacaagcaaagcaagttg	CRISPR spacer
agatattcaacaagcaaagcagaatc	Protospacer
*** *****************.. *

37. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to NZ_CP020749 (Bacillus mycoides strain Gnyt1 plasmid unnamed6, complete sequence) position: , mismatch: 5, identity: 0.808

aaaagaggaacacatgagcttgaggt	CRISPR spacer
tatcaaggaactcatgagcttgaggt	Protospacer
 *  .****** **************

38. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to CP024687 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-3-257K, complete sequence) position: , mismatch: 5, identity: 0.808

aaaagaggaacacatgagcttgaggt	CRISPR spacer
tatcaaggaactcatgagcttgaggt	Protospacer
 *  .****** **************

39. spacer 2.1|928134|26|NZ_LT571449|CRISPRCasFinder matches to MF358541 (Streptomyces phage Warpy, complete genome) position: , mismatch: 5, identity: 0.808

aaaagaggaacacatgagcttgaggt	CRISPR spacer
aaatgaggaacacaggagcttgaacc	Protospacer
*** ********** ********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52503 : 100929

Streptococcus_phage(22.22%)

integrase,protease,transposase

attL 44656:44673|attR 73747:73764

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
44656:44673	attL	NA	NA	NA	NA
WP_000410574.1\|52503_52869_-\|transposase	transposase	NA	NA	NA	NA
WP_000026850.1\|52877_54941_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000706213.1\|54943_56056_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	1.7e-11	31.6
WP_002504480.1\|56417_56969_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_002504479.1\|56988_57825_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_002504478.1\|58294_60190_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_002504477.1\|60204_61272_-	acyltransferase family protein	NA	NA	NA	NA
WP_002504757.1\|62154_63174_+	hypothetical protein	NA	NA	NA	NA
WP_002504758.1\|63277_63532_+	hypothetical protein	NA	NA	NA	NA
WP_002504759.1\|63826_64696_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.7e-75	50.9
WP_002505570.1\|64792_66028_+	hypothetical protein	D7RWE8	Brochothrix_phage	1.2e-26	29.3
WP_002505571.1\|66103_68617_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_002504498.1\|68651_71552_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_002505573.1\|72058_72385_+	helix-turn-helix transcriptional regulator	A0A141E0Q5	Streptococcus_phage	7.1e-06	39.7
WP_002484875.1\|72421_73240_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002484618.1\|74225_74795_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
73747:73764	attR	NA	NA	NA	NA
WP_002484621.1\|75144_76089_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002484615.1\|76112_78794_-	MMPL family transporter	NA	NA	NA	NA
WP_063964178.1\|80404_81079_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.9e-125	98.2
WP_002484887.1\|81216_82290_+	hypothetical protein	NA	NA	NA	NA
WP_002484886.1\|82324_83074_+	hypothetical protein	NA	NA	NA	NA
WP_002484888.1\|83115_84093_+	DUF1002 domain-containing protein	NA	NA	NA	NA
WP_001631028.1\|84273_84417_+	restriction endonuclease subunit R	NA	NA	NA	NA
WP_001631030.1\|85933_86431_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001631031.1\|87102_87513_-	DUF2871 domain-containing protein	NA	NA	NA	NA
WP_001631032.1\|87910_88414_-	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_001631033.1\|88429_88741_-	DUF960 domain-containing protein	NA	NA	NA	NA
WP_001631034.1\|88827_89178_-	hypothetical protein	NA	NA	NA	NA
WP_063964179.1\|89678_91307_-	recombinase family protein	A0A2P1JU08	Anoxybacillus_phage	1.6e-45	28.3
WP_001631036.1\|91303_92665_-	recombinase family protein	A6M972	Geobacillus_virus	7.3e-20	27.0
WP_002485724.1\|92851_93466_-	hypothetical protein	NA	NA	NA	NA
WP_000565831.1\|93552_93828_+	hypothetical protein	NA	NA	NA	NA
WP_001631039.1\|93939_94299_-	hypothetical protein	NA	NA	NA	NA
WP_000391495.1\|94505_94832_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002485723.1\|95161_97087_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-98	36.3
WP_000566670.1\|98312_99569_+	DUF3578 domain-containing protein	NA	NA	NA	NA
WP_001282728.1\|99983_100223_+	hypothetical protein	NA	NA	NA	NA
WP_001106057.1\|100254_100929_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	2.6e-127	99.1

DBSCAN-SWA_2

448860 : 459396

Staphylococcus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001830355.1\|448860_449700_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-60	43.0
WP_001830351.1\|449902_451009_+	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	6.3e-62	43.2
WP_025987135.1\|451078_452131_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	2.0e-17	30.6
WP_001830352.1\|452133_452823_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.4e-34	35.2
WP_001830332.1\|452797_453271_-	DoxX family protein	NA	NA	NA	NA
WP_001830329.1\|453321_453759_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_049361804.1\|454354_454492_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	2.3e-11	76.7
WP_001830331.1\|454859_455459_-	hypothetical protein	NA	NA	NA	NA
WP_001830330.1\|455561_456275_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	1.6e-55	44.8
WP_001830341.1\|456275_456695_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_001830328.1\|456699_457371_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	4.1e-64	55.7
WP_001830349.1\|457667_458255_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_001830323.1\|458244_459396_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	7.5e-26	39.6

DBSCAN-SWA_3

480819 : 491254

uncultured_Caudovirales_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002438897.1\|480819_482325_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	5.5e-61	34.0
WP_001832596.1\|482608_483109_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.1e-50	70.1
WP_001829684.1\|483122_483998_-	DMT family transporter	NA	NA	NA	NA
WP_001829589.1\|484753_485152_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	2.0e-71	100.0
WP_001829582.1\|485114_487220_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	100.0
WP_001829597.1\|487338_488307_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	3.9e-185	100.0
WP_002456931.1\|488281_488545_+	hypothetical protein	A0A2H4IYB4	uncultured_Caudovirales_phage	5.5e-17	100.0
WP_002438902.1\|488560_489535_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	5.9e-165	99.7
WP_002438903.1\|489518_490478_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	4.1e-17	100.0
WP_001829596.1\|490474_491254_+	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	5.1e-18	33.6

DBSCAN-SWA_4

692241 : 743171

uncultured_Caudovirales_phage(69.86%)

tail,terminase,portal,head,protease,capsid,plate,integrase,holin

attL 680737:680753|attR 711241:711257

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
680737:680753	attL	NA	NA	NA	NA
WP_001829335.1\|692241_693999_+\|protease	serine protease	W5SAB9	Pithovirus	4.6e-06	24.3
WP_001829321.1\|694016_695375_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_001829277.1\|695513_697019_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_001829312.1\|697121_697724_-	hypothetical protein	NA	NA	NA	NA
WP_001829339.1\|697729_697915_-	DUF2187 family protein	NA	NA	NA	NA
WP_001829269.1\|698119_699106_+	lipoate--protein ligase	NA	NA	NA	NA
WP_001829292.1\|699183_699402_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_001829272.1\|699616_700192_+	competence protein ComK	NA	NA	NA	NA
WP_002504795.1\|700592_701642_-\|integrase	site-specific integrase	A0A2H4J492	uncultured_Caudovirales_phage	2.0e-198	100.0
WP_002497576.1\|701752_701950_+	hypothetical protein	A0A2H4JBN9	uncultured_Caudovirales_phage	1.9e-30	100.0
WP_002497577.1\|701946_702354_-	TIR domain-containing protein	A0A2H4J496	uncultured_Caudovirales_phage	1.7e-73	100.0
WP_002497578.1\|702347_702785_-	DUF4231 domain-containing protein	A0A2H4JD89	uncultured_Caudovirales_phage	7.4e-75	100.0
WP_002504794.1\|702896_703565_-	hypothetical protein	A0A2H4J494	uncultured_Caudovirales_phage	9.6e-66	99.1
WP_002504200.1\|703582_704041_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4J5R5	uncultured_Caudovirales_phage	2.8e-85	100.0
WP_002504199.1\|704062_704377_-	helix-turn-helix transcriptional regulator	A0A2H4JCJ2	uncultured_Caudovirales_phage	9.8e-53	100.0
WP_002456362.1\|704529_704742_+	helix-turn-helix transcriptional regulator	A0A2H4J3K6	uncultured_Caudovirales_phage	6.4e-32	100.0
WP_002485815.1\|704785_704926_+	hypothetical protein	A0A2H4JB78	uncultured_Caudovirales_phage	1.0e-17	100.0
WP_002504198.1\|704918_705143_-	hypothetical protein	A0A2H4JDC2	uncultured_Caudovirales_phage	1.5e-34	98.6
WP_002504197.1\|705192_705933_+	phage repressor protein	A0A2H4J436	uncultured_Caudovirales_phage	2.0e-133	97.6
WP_001830281.1\|705945_706155_+	hypothetical protein	A0A2H4J7I0	uncultured_Caudovirales_phage	9.7e-33	100.0
WP_002504793.1\|706168_706315_+	hypothetical protein	A0A2H4J7F2	uncultured_Caudovirales_phage	2.3e-17	97.9
WP_002484728.1\|706301_706580_-	hypothetical protein	A0A2H4JB42	uncultured_Caudovirales_phage	1.7e-48	100.0
WP_002484719.1\|706674_706851_+	hypothetical protein	A0A2H4J7G3	uncultured_Caudovirales_phage	2.9e-22	96.6
WP_002484751.1\|706912_707164_+	hypothetical protein	A0A1W6JP63	Staphylococcus_phage	5.2e-41	97.6
WP_002484734.1\|707156_707642_+	siphovirus Gp157 family protein	A0A1W6JP90	Staphylococcus_phage	6.1e-78	98.8
WP_002469464.1\|707642_708269_+	DUF1071 domain-containing protein	A0A2H4J4I1	uncultured_Caudovirales_phage	1.1e-116	100.0
WP_002484754.1\|708261_708678_+	single-stranded DNA-binding protein	A0A141VTR6	Staphylococcus_phage	1.5e-72	100.0
WP_002504792.1\|708691_709381_+	hypothetical protein	A0A2H4J4H1	uncultured_Caudovirales_phage	3.0e-131	98.3
WP_002504791.1\|709358_709589_+	helix-turn-helix transcriptional regulator	A0A2H4J4G1	uncultured_Caudovirales_phage	6.1e-36	98.7
WP_002504790.1\|709594_709810_+	helix-turn-helix transcriptional regulator	Q4ZC20	Staphylococcus_virus	5.5e-23	77.9
WP_002504789.1\|709796_710525_+	DnaD domain protein	A0A2H4JC54	uncultured_Caudovirales_phage	4.5e-109	97.9
WP_002504788.1\|710530_710884_+	hypothetical protein	A0A2H4J445	uncultured_Caudovirales_phage	1.2e-51	100.0
WP_002504787.1\|710873_712121_+	AAA family ATPase	A0A2H4J440	uncultured_Caudovirales_phage	2.3e-230	99.5
711241:711257	attR	NA	NA	NA	NA
WP_002504786.1\|712117_712348_+	hypothetical protein	A0A2H4J4C5	uncultured_Caudovirales_phage	1.1e-37	100.0
WP_002456377.1\|712316_712541_+	DUF3269 family protein	A0A2H4J7T2	uncultured_Caudovirales_phage	3.2e-34	100.0
WP_002504785.1\|712551_712968_+	DUF1064 domain-containing protein	A0A2H4J4B5	uncultured_Caudovirales_phage	1.9e-75	99.3
WP_002484718.1\|712954_713329_+	hypothetical protein	A0A2H4JFL4	uncultured_Caudovirales_phage	3.3e-63	99.2
WP_002484773.1\|713328_713520_+	hypothetical protein	A0A2H4JE06	uncultured_Caudovirales_phage	1.2e-26	96.8
WP_002484760.1\|713520_713880_+	hypothetical protein	A0A1W6JPB9	Staphylococcus_phage	3.8e-61	96.6
WP_002484724.1\|713876_714329_+	DUF3310 domain-containing protein	A0A1W6JPA2	Staphylococcus_phage	1.9e-81	100.0
WP_002484753.1\|714318_714606_+	hypothetical protein	A0A1W6JPD4	Staphylococcus_phage	2.1e-46	98.9
WP_002504784.1\|714621_715302_+	hypothetical protein	A0A1W6JP66	Staphylococcus_phage	1.4e-128	97.3
WP_002504783.1\|715298_715499_+	hypothetical protein	A0A2H4J8S5	uncultured_Caudovirales_phage	2.2e-26	92.3
WP_100214436.1\|715518_715836_+	hypothetical protein	A0A2H4JEH7	uncultured_Caudovirales_phage	1.6e-26	74.4
WP_002504781.1\|715816_716014_+	Lar family restriction alleviation protein	A0A2R3ZXL0	Staphylococcus_phage	1.2e-21	79.3
WP_002504780.1\|716014_716542_+	dUTP diphosphatase	A0A2K9VBU6	Staphylococcus_phage	1.8e-54	62.4
WP_002504779.1\|716703_716862_+	DUF1381 domain-containing protein	A0A2H4JF58	uncultured_Caudovirales_phage	1.4e-12	82.2
WP_002504778.1\|716920_717199_+	hypothetical protein	H9A0M2	Staphylococcus_phage	4.0e-42	94.6
WP_002504777.1\|717191_717359_+	hypothetical protein	A0A0N9SKK8	Staphylococcus_phage	1.6e-22	94.4
WP_002484731.1\|717358_717508_+	DUF1514 family protein	A0A0N9S034	Staphylococcus_phage	3.4e-16	93.9
WP_002484732.1\|717524_717971_+	transcriptional regulator	A0A0N7GFI1	Staphylococcus_phage	1.1e-78	96.6
WP_002504776.1\|718565_718916_+	HNH endonuclease	A0A2H4J8X0	uncultured_Caudovirales_phage	1.2e-59	94.8
WP_002484733.1\|719058_719529_+\|terminase	phage terminase small subunit P27 family	A0A2H4J985	uncultured_Caudovirales_phage	5.2e-82	98.7
WP_002484749.1\|719521_721273_+\|terminase	terminase large subunit	H9A111	Staphylococcus_phage	0.0e+00	97.1
WP_002500102.1\|721284_721479_+	hypothetical protein	A0A2H4J9T6	uncultured_Caudovirales_phage	5.3e-25	100.0
WP_002504774.1\|721481_722714_+\|portal	phage portal protein	A0A2H4JA65	uncultured_Caudovirales_phage	2.1e-231	98.0
WP_002504773.1\|722703_723261_+\|head,protease	HK97 family phage prohead protease	A0A2H4J792	uncultured_Caudovirales_phage	9.4e-99	96.2
WP_002504772.1\|723300_724650_+\|capsid	phage major capsid protein	A0A2H4J4F8	uncultured_Caudovirales_phage	1.4e-193	97.3
WP_002484745.1\|724668_725010_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8T8	uncultured_Caudovirales_phage	4.6e-56	96.5
WP_002484730.1\|724999_725329_+	hypothetical protein	A0A2H4J3W3	uncultured_Caudovirales_phage	1.8e-57	99.1
WP_173019344.1\|725325_725730_+	hypothetical protein	A0A2H4J7V9	uncultured_Caudovirales_phage	1.7e-65	93.3
WP_002484722.1\|725732_726137_+	hypothetical protein	A0A2H4J7K9	uncultured_Caudovirales_phage	6.0e-71	100.0
WP_002484765.1\|726149_726779_+\|tail	phage tail protein	A0A2H4J4B0	uncultured_Caudovirales_phage	2.6e-113	99.5
WP_002484762.1\|726797_726983_+	hypothetical protein	A0A2H4J420	uncultured_Caudovirales_phage	6.0e-26	100.0
WP_002484709.1\|727046_727409_+	hypothetical protein	A0A2H4JCK3	uncultured_Caudovirales_phage	3.3e-60	100.0
WP_153801570.1\|727441_727594_+	hypothetical protein	A0A2H4J9P4	uncultured_Caudovirales_phage	1.4e-20	100.0
WP_002504771.1\|727622_732179_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4J4J3	uncultured_Caudovirales_phage	0.0e+00	80.7
WP_002504770.1\|732180_733014_+\|tail	phage tail family protein	A0A2H4J498	uncultured_Caudovirales_phage	1.1e-162	99.6
WP_002504769.1\|733023_734583_+\|tail	phage tail protein	H9A128	Staphylococcus_phage	1.7e-299	98.8
WP_002456411.1\|734575_734749_+	hypothetical protein	A0A2H4J4G9	uncultured_Caudovirales_phage	3.1e-24	98.2
WP_002504768.1\|734764_736627_+	DUF2817 domain-containing protein	A0A2H4IYE0	uncultured_Caudovirales_phage	0.0e+00	99.0
WP_002504767.1\|736626_737841_+\|plate	BppU family phage baseplate upper protein	A0A2H4JA98	uncultured_Caudovirales_phage	5.2e-203	98.5
WP_002504766.1\|737845_738469_+	poly-gamma-glutamate hydrolase family protein	A0A2H4J4E6	uncultured_Caudovirales_phage	1.9e-116	99.0
WP_002456415.1\|738465_738891_+	hypothetical protein	A0A2H4JA87	uncultured_Caudovirales_phage	5.2e-73	99.3
WP_002504154.1\|738877_739285_+	hypothetical protein	A0A2H4JCJ5	uncultured_Caudovirales_phage	1.6e-68	98.5
WP_002504765.1\|739410_739677_+\|holin	phage holin	A1BU76	Staphylococcus_virus	2.3e-42	97.7
WP_002504764.1\|739676_741059_+	N-acetylmuramoyl-L-alanine amidase	I6TG35	Staphylococcus_virus	3.5e-280	99.1
WP_002504133.1\|741136_742063_+	hypothetical protein	I6T7P2	Staphylococcus_virus	5.5e-160	96.4
WP_002504240.1\|742255_742783_+	DUF4065 domain-containing protein	M9QX37	Staphylococcus_phage	4.6e-87	88.0
WP_002504241.1\|742772_743171_+	hypothetical protein	M9QRV7	Staphylococcus_phage	2.1e-52	69.7

DBSCAN-SWA_5

774400 : 782870

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001831735.1\|774400_774883_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.2e-21	43.3
WP_001831674.1\|774869_775997_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_001831723.1\|775997_776702_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	H8ZMN3	Synechococcus_phage	1.6e-47	42.5
WP_001831728.1\|776701_776962_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_001831727.1\|776963_777635_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_001831715.1\|777627_779817_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.7e-140	40.4
WP_001831721.1\|779795_781280_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.4e-45	31.9
WP_002504799.1\|781272_782304_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	2.8e-64	43.4
WP_001831672.1\|782303_782870_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.0

DBSCAN-SWA_6

1001904 : 1058028

Staphylococcus_phage(44.12%)

tail,terminase,tRNA,portal,head,protease,capsid,plate,integrase,holin,transposase

attL 1022163:1022222|attR 1056669:1056791

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002439565.1\|1001904_1003449_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_001829463.1\|1003450_1003816_+	YlbF family regulator	NA	NA	NA	NA
WP_001829480.1\|1003839_1004334_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA
WP_001832553.1\|1004531_1007153_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	3.8e-41	23.3
WP_049391641.1\|1007167_1009105_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.1e-61	30.6
WP_002504493.1\|1009118_1009652_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_001829504.1\|1010026_1010851_+	aquaporin family protein	NA	NA	NA	NA
WP_001829522.1\|1011004_1012504_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001832566.1\|1012680_1014354_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_002456557.1\|1014577_1015504_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_002504492.1\|1015515_1016514_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001829517.1\|1016467_1016707_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_002456556.1\|1016928_1017405_-	glutathione peroxidase	Q70H87	Fowlpox_virus	1.1e-26	43.7
WP_002456555.1\|1017505_1018756_+	GTPase HflX	NA	NA	NA	NA
WP_002456554.1\|1018771_1020010_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_001829488.1\|1020490_1020856_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_001829492.1\|1020874_1022215_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
1022163:1022222	attL	NA	NA	NA	NA
WP_002457334.1\|1022359_1023484_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	1.9e-34	29.0
WP_002457333.1\|1023526_1023898_-	hypothetical protein	NA	NA	NA	NA
WP_002457332.1\|1024067_1024418_-	helix-turn-helix domain-containing protein	R9QTP6	Staphylococcus_phage	3.4e-22	50.0
WP_002457331.1\|1024582_1024819_+	DUF739 family protein	A0A2I6PDH8	Staphylococcus_phage	8.7e-30	83.3
WP_002457330.1\|1024846_1025125_+	hypothetical protein	NA	NA	NA	NA
WP_002457329.1\|1025146_1025302_+	hypothetical protein	NA	NA	NA	NA
WP_002457328.1\|1025301_1025466_+	hypothetical protein	NA	NA	NA	NA
WP_002457327.1\|1025454_1025658_-	hypothetical protein	NA	NA	NA	NA
WP_002457326.1\|1025723_1025933_+	hypothetical protein	A0A2H4JFX1	uncultured_Caudovirales_phage	1.3e-21	68.1
WP_002457325.1\|1025947_1026139_+	DUF1270 family protein	NA	NA	NA	NA
WP_002457324.1\|1026201_1026468_+	hypothetical protein	A0A2H4JAK6	uncultured_Caudovirales_phage	6.2e-16	57.1
WP_002457323.1\|1026481_1026877_+	single-stranded DNA-binding protein	Q4ZAD5	Staphylococcus_virus	4.1e-32	51.4
WP_063964203.1\|1026906_1027809_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	1.4e-54	53.1
WP_002504544.1\|1027814_1028162_+	hypothetical protein	NA	NA	NA	NA
WP_002457320.1\|1028212_1028512_+	hypothetical protein	NA	NA	NA	NA
WP_002457319.1\|1029182_1029407_-	hypothetical protein	NA	NA	NA	NA
WP_002484781.1\|1029581_1030082_+	positive control factor	A0A0S2MVE1	Bacillus_phage	3.5e-12	31.2
WP_002458440.1\|1030109_1030952_+	hypothetical protein	NA	NA	NA	NA
WP_002458439.1\|1031006_1031363_+	HNH endonuclease	A0A2K9VBV6	Staphylococcus_phage	1.3e-21	53.6
WP_002458438.1\|1031483_1031885_+	hypothetical protein	R9TQ46	Paenibacillus_phage	1.4e-27	59.3
WP_002458437.1\|1031877_1033593_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.7e-207	60.1
WP_002458436.1\|1033607_1034834_+\|portal	phage portal protein	A0A290G4I4	Caldibacillus_phage	1.6e-58	40.1
WP_002484782.1\|1034823_1035468_+\|head,protease	HK97 family phage prohead protease	V5USG3	Enterococcus_phage	9.1e-21	38.5
WP_002458435.1\|1035460_1036711_+\|capsid	phage major capsid protein	R9TQG7	Paenibacillus_phage	2.5e-67	37.8
WP_002458434.1\|1036724_1037012_+	hypothetical protein	NA	NA	NA	NA
WP_002458433.1\|1037021_1037360_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_002458432.1\|1037412_1037709_+\|head	phage head closure protein	G4KNQ4	Staphylococcus_phage	1.8e-08	32.2
WP_002484776.1\|1037708_1038122_+	hypothetical protein	A0A059T5F3	Listeria_phage	7.9e-18	39.8
WP_002484779.1\|1038118_1038508_+	hypothetical protein	Q4ZCL5	Staphylococcus_virus	9.1e-16	38.4
WP_063964204.1\|1038519_1039179_+\|tail	phage tail protein	A0A059T7Y4	Listeria_phage	5.6e-26	39.6
WP_002484788.1\|1039202_1039553_+	hypothetical protein	NA	NA	NA	NA
WP_002484786.1\|1039725_1044216_+\|tail	phage tail tape measure protein	A0A075M036	Staphylococcus_phage	4.8e-217	46.8
WP_002458426.1\|1044217_1045042_+\|tail	phage tail family protein	A0A1D6Z283	Staphylococcus_phage	2.1e-46	37.6
WP_002458425.1\|1045054_1046233_+\|tail	phage tail protein	A0A1W6JQ67	Staphylococcus_phage	2.2e-60	32.1
WP_173019342.1\|1046219_1046396_+	hypothetical protein	NA	NA	NA	NA
WP_002496096.1\|1046644_1048339_+\|transposase	IS1182 family transposase	A0ZS58	Staphylococcus_virus	8.0e-242	78.1
WP_104832459.1\|1048421_1049600_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	3.3e-61	37.2
WP_002458424.1\|1049893_1050490_+	hypothetical protein	A0A1J0MFD6	Staphylococcus_phage	5.8e-54	49.1
WP_002458423.1\|1050502_1051519_+	SGNH/GDSL hydrolase family protein	A0A1J0MFI8	Staphylococcus_phage	1.9e-97	56.0
WP_002484785.1\|1051536_1052814_+\|plate	BppU family phage baseplate upper protein	A0A1J0MFQ3	Staphylococcus_phage	1.8e-124	52.2
WP_002484783.1\|1052837_1053233_+\|holin	phage holin family protein	A0A1S6KVE0	Staphylococcus_phage	1.7e-17	37.9
WP_002458419.1\|1053272_1054190_+	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNM6	Staphylococcus_phage	5.0e-65	56.1
WP_002458418.1\|1054368_1055142_+	hypothetical protein	Q4ZAU0	Staphylococcus_virus	2.8e-48	41.4
WP_002484791.1\|1055148_1055880_+	hypothetical protein	NA	NA	NA	NA
WP_002457563.1\|1056269_1056482_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	6.4e-16	62.3
WP_002456552.1\|1057674_1058028_+	hypothetical protein	A0A1J0MF61	Staphylococcus_phage	2.2e-21	47.0
1056669:1056791	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1529991 : 1649546

118

Staphylococcus_phage(53.03%)

tail,terminase,tRNA,portal,head,protease,capsid,integrase,holin,transposase

attL 1578830:1578889|attR 1650249:1650324

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002484464.1\|1529991_1541070_-	YSIRK signal domain/LPXTG anchor domain surface protein	A0A2H4PQU6	Staphylococcus_phage	3.2e-28	26.2
WP_001830891.1\|1541474_1541786_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.1e-35	71.8
WP_002484468.1\|1541811_1544229_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.3
WP_001830884.1\|1544517_1545732_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	4.6e-183	83.7
WP_001830802.1\|1545838_1546792_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.3e-67	84.7
WP_001830894.1\|1546788_1547352_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	1.9e-67	66.5
WP_002504856.1\|1547573_1547990_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002484455.1\|1548479_1549307_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002484452.1\|1549549_1550551_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.8e-131	69.7
WP_002456446.1\|1550808_1551270_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.2e-59	84.2
WP_002504857.1\|1551282_1552464_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.7e-178	75.6
WP_002467848.1\|1552476_1553109_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-87	77.6
WP_002494782.1\|1553115_1554159_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	8.9e-135	66.8
WP_002484471.1\|1554594_1556079_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.5e-13	65.6
WP_001830727.1\|1556426_1557278_-	glucosaminidase domain-containing protein	A0A1J0MFB0	Staphylococcus_phage	1.0e-32	35.6
WP_002456441.1\|1557655_1557871_-	hypothetical protein	NA	NA	NA	NA
WP_002484457.1\|1558078_1558558_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	9.1e-26	42.9
WP_001830734.1\|1558563_1559007_+	competence protein ComK	NA	NA	NA	NA
WP_002467846.1\|1558993_1559437_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	4.1e-20	43.5
WP_002484454.1\|1559576_1560290_-	transaldolase	M1PR54	Cyanophage	7.0e-22	37.4
WP_002446728.1\|1560566_1560875_+	hypothetical protein	NA	NA	NA	NA
WP_001830726.1\|1560911_1561277_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.1e-34	57.0
WP_002484462.1\|1561273_1561627_+	CrcB family protein	NA	NA	NA	NA
WP_104832471.1\|1562105_1563284_+\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	3.7e-60	37.0
WP_049385659.1\|1563513_1563651_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	1.8e-11	79.1
WP_002456435.1\|1563953_1564790_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.1e-110	68.6
WP_002456434.1\|1564969_1565878_-	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	1.8e-102	80.6
WP_001829830.1\|1565980_1567180_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.1e-192	85.4
WP_002469572.1\|1567549_1569142_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	1.6e-268	83.6
WP_002456431.1\|1569372_1570158_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.0e-99	71.3
WP_002456430.1\|1570144_1570612_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.5e-44	57.4
WP_002457867.1\|1570682_1570931_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	6.5e-36	83.1
WP_063964220.1\|1570927_1571929_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.5e-91	50.2
WP_002456429.1\|1571918_1573343_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.6e-173	63.9
WP_002456427.1\|1574593_1575259_+	Ltp family lipoprotein	A0A2H4J5B8	uncultured_Caudovirales_phage	7.0e-08	41.8
WP_002456426.1\|1575420_1575708_+	hypothetical protein	A0A2H4JGN1	uncultured_Caudovirales_phage	5.5e-18	50.0
WP_002456424.1\|1576234_1576969_+	hypothetical protein	NA	NA	NA	NA
WP_002456423.1\|1577348_1577561_-	hypothetical protein	A0A2H4JCA1	uncultured_Caudovirales_phage	7.3e-20	72.9
WP_002456422.1\|1577719_1578214_+\|integrase	site-specific integrase	B7T092	Staphylococcus_virus	3.8e-67	76.1
1578830:1578889	attL	NA	NA	NA	NA
WP_002456357.1\|1579477_1580032_-	serine hydrolase family protein	NA	NA	NA	NA
WP_002469574.1\|1580167_1581565_-	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_001829846.1\|1581708_1582632_-	ferrochelatase	NA	NA	NA	NA
WP_002456355.1\|1582708_1583770_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_001829811.1\|1584062_1584566_+	signal transduction protein TRAP	NA	NA	NA	NA
WP_001829861.1\|1585127_1585745_-	CadD family cadmium resistance transporter	NA	NA	NA	NA
WP_002456354.1\|1585803_1587027_-	ABC transporter permease	NA	NA	NA	NA
WP_001829855.1\|1587019_1587760_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.0e-25	28.4
WP_001829828.1\|1587889_1588315_+	HIT family protein	NA	NA	NA	NA
WP_002456353.1\|1588391_1588763_+	YtxH domain-containing protein	NA	NA	NA	NA
WP_001829837.1\|1588928_1589489_+	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_002456352.1\|1589690_1590668_+	foldase	NA	NA	NA	NA
WP_161375074.1\|1590817_1590919_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_002456351.1\|1591093_1592035_-	3'-5' exoribonuclease YhaM	NA	NA	NA	NA
WP_002456350.1\|1592031_1594971_-	AAA family ATPase	NA	NA	NA	NA
WP_001829843.1\|1594960_1596157_-	DNA repair exonuclease	NA	NA	NA	NA
WP_001829805.1\|1596427_1596772_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	5.8e-06	30.6
WP_002485606.1\|1596844_1597975_-	DUF445 domain-containing protein	NA	NA	NA	NA
WP_001829807.1\|1598156_1598621_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001829810.1\|1598891_1599515_-	response regulator transcription factor	A0A1V0SGR9	Hokovirus	5.2e-05	28.2
WP_001829819.1\|1599507_1600641_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_001829804.1\|1600799_1601624_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_063964221.1\|1601984_1603370_-	class II fumarate hydratase	NA	NA	NA	NA
WP_001829818.1\|1603554_1603959_-	hypothetical protein	NA	NA	NA	NA
WP_002468490.1\|1604114_1604294_-	hypothetical protein	NA	NA	NA	NA
WP_002456349.1\|1604317_1604917_-	glucosamine-6-phosphate isomerase	NA	NA	NA	NA
WP_001829836.1\|1605074_1605545_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_001829814.1\|1605541_1606672_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_064783702.1\|1606881_1607019_-	hypothetical protein	A0A146ICT8	Staphylococcus_phage	9.8e-10	73.8
WP_001829838.1\|1607533_1608256_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.6e-34	41.5
WP_002440300.1\|1608248_1609706_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_002456347.1\|1609944_1611003_-	PTS transporter subunit IIC	NA	NA	NA	NA
WP_001829860.1\|1611228_1612077_-\|protease	serine protease	A0A2H4PQN3	Staphylococcus_phage	3.5e-20	31.9
WP_002484587.1\|1612528_1612846_-	hypothetical protein	NA	NA	NA	NA
WP_012112670.1\|1613190_1613793_-	hypothetical protein	NA	NA	NA	NA
WP_002484578.1\|1613923_1614841_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNM6	Staphylococcus_phage	4.9e-68	63.4
WP_002484580.1\|1614894_1615281_-\|holin	phage holin family protein	D7RWK5	Brochothrix_phage	9.3e-13	33.9
WP_002484582.1\|1615282_1615564_-	hypothetical protein	NA	NA	NA	NA
WP_002484576.1\|1615598_1616009_-	hypothetical protein	A0A1I9KKA6	Lactobacillus_phage	4.3e-08	31.3
WP_002484585.1\|1616029_1619485_-\|tail	phage tail protein	M1PRQ3	Streptococcus_phage	1.7e-20	24.0
WP_002484577.1\|1619481_1620252_-	hypothetical protein	NA	NA	NA	NA
WP_063964222.1\|1620254_1624436_-\|tail	phage tail tape measure protein	A0A2P0ZLF1	Lactobacillus_phage	1.9e-63	42.6
WP_002446778.1\|1624499_1624712_-	hypothetical protein	NA	NA	NA	NA
WP_002446779.1\|1624759_1625110_-	hypothetical protein	NA	NA	NA	NA
WP_002484613.1\|1625133_1625838_-	hypothetical protein	NA	NA	NA	NA
WP_002484584.1\|1625843_1626281_-	hypothetical protein	NA	NA	NA	NA
WP_002446782.1\|1626280_1626619_-	hypothetical protein	NA	NA	NA	NA
WP_002446783.1\|1626618_1626948_-\|head	phage head closure protein	NA	NA	NA	NA
WP_002484579.1\|1626919_1627228_-\|head,tail	phage head-tail connector protein	A0A2H4JF26	uncultured_Caudovirales_phage	1.5e-10	39.1
WP_002484575.1\|1627254_1628412_-\|capsid	phage major capsid protein	A0A0U4JIF4	Bacillus_phage	2.2e-97	51.7
WP_002484598.1\|1628436_1629183_-\|protease	Clp protease ClpP	A0A2H4J8Y7	uncultured_Caudovirales_phage	6.4e-42	47.4
WP_002484608.1\|1629182_1630319_-\|portal	phage portal protein	A0A0U4IIQ9	Bacillus_phage	4.0e-88	43.8
WP_002484595.1\|1630334_1631969_-\|terminase	terminase large subunit	A0A0U4B089	Bacillus_phage	1.8e-182	56.6
WP_002491654.1\|1631952_1632291_-	hypothetical protein	D2XR14	Bacillus_phage	5.8e-11	39.4
WP_002446790.1\|1632613_1632904_-	HNH endonuclease	D2XR61	Bacillus_phage	3.2e-18	42.2
WP_002484574.1\|1633185_1633803_-	hypothetical protein	NA	NA	NA	NA
WP_002484607.1\|1634006_1634498_-	DNA-directed RNA polymerase sigma-70 factor	S5MAA9	Brevibacillus_phage	2.6e-07	28.0
WP_002484601.1\|1634821_1636696_-	DNA primase	A0A1B1P7L5	Bacillus_phage	1.2e-211	58.0
WP_002484603.1\|1636725_1636920_-	hypothetical protein	NA	NA	NA	NA
WP_002484606.1\|1636997_1637243_-	hypothetical protein	NA	NA	NA	NA
WP_002484581.1\|1637310_1637778_+	hypothetical protein	A0A1W6JPR4	Staphylococcus_phage	3.5e-22	41.5
WP_002484596.1\|1637805_1638126_-	phosphoribosyl-ATP diphosphatase	A0A2H4J2H9	uncultured_Caudovirales_phage	4.6e-42	81.6
WP_002484605.1\|1638190_1638922_-	hypothetical protein	H9A0T0	Staphylococcus_phage	5.4e-62	49.2
WP_002484612.1\|1638928_1639147_-	DUF3310 domain-containing protein	Q4ZC12	Staphylococcus_virus	1.9e-26	78.6
WP_002484590.1\|1639177_1639528_-	helix-turn-helix transcriptional regulator	A0A2H4IYG5	uncultured_Caudovirales_phage	4.8e-16	38.8
WP_002484609.1\|1639541_1641260_-	hypothetical protein	A0A1B1P7M5	Bacillus_phage	1.3e-207	63.5
WP_002484600.1\|1641309_1641792_-	DUF669 domain-containing protein	A0A2H4J1S8	uncultured_Caudovirales_phage	8.9e-21	38.4
WP_002484592.1\|1641843_1642050_-	hypothetical protein	NA	NA	NA	NA
WP_002495697.1\|1642068_1643880_-	AAA family ATPase	A0A1B1P7N0	Bacillus_phage	1.1e-164	57.4
WP_002484599.1\|1643879_1644176_-	hypothetical protein	A0A1B1P7M6	Bacillus_phage	3.6e-25	58.2
WP_002484586.1\|1644168_1644486_-	hypothetical protein	A0A2P0ZLA7	Lactobacillus_phage	3.7e-23	46.5
WP_002446807.1\|1644488_1645730_-	DEAD/DEAH box helicase family protein	A0A1B1P7L4	Bacillus_phage	6.9e-134	57.2
WP_002446808.1\|1645877_1646072_-	hypothetical protein	NA	NA	NA	NA
WP_002446809.1\|1646087_1646411_-	DUF771 domain-containing protein	NA	NA	NA	NA
WP_002446810.1\|1646464_1646656_-	helix-turn-helix transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	3.1e-17	66.7
WP_002446811.1\|1646816_1647152_+	helix-turn-helix transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	1.4e-28	58.9
WP_002446812.1\|1647307_1647682_+	hypothetical protein	NA	NA	NA	NA
WP_012088039.1\|1647722_1648454_+	hypothetical protein	NA	NA	NA	NA
WP_002484510.1\|1648499_1649546_+\|integrase	tyrosine-type recombinase/integrase	A0A1J0MFS3	Staphylococcus_phage	5.0e-53	36.3
1650249:1650324	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1719354 : 1762000

uncultured_Caudovirales_phage(44.0%)

integrase,transposase,terminase

attL 1742515:1742533|attR 1760040:1760058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195429.1\|1719354_1720527_+\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_002469106.1\|1720799_1720937_+	hypothetical protein	NA	NA	NA	NA
WP_001284658.1\|1720988_1721369_-	penicillinase repressor BlaI	NA	NA	NA	NA
WP_001096367.1\|1721358_1723116_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
WP_000733622.1\|1723222_1724068_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	4.4e-31	33.9
WP_000612779.1\|1724381_1724792_+	YolD-like family protein	U3PG23	Staphylococcus_phage	3.1e-30	53.5
WP_000368919.1\|1724834_1726205_-	hypothetical protein	NA	NA	NA	NA
WP_000410574.1\|1726209_1726575_-\|transposase	transposase	NA	NA	NA	NA
WP_000026850.1\|1726583_1728647_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000706213.1\|1728649_1729762_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	1.7e-11	31.6
WP_001830431.1\|1730462_1730633_-	hypothetical protein	NA	NA	NA	NA
WP_001830433.1\|1731014_1732055_+	choloylglycine hydrolase	NA	NA	NA	NA
WP_001830373.1\|1732108_1732945_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001830393.1\|1732941_1733499_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_001830370.1\|1733551_1734037_-	hypothetical protein	NA	NA	NA	NA
WP_001830379.1\|1734827_1735559_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_001830444.1\|1735558_1736431_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	1.7e-25	34.3
WP_002494112.1\|1736451_1737111_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_001830432.1\|1737091_1738006_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	W6JKT0	Anomala_cuprea_entomopoxvirus	2.1e-18	30.7
WP_001830364.1\|1738005_1738383_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_059279955.1\|1738685_1738871_-	hypothetical protein	NA	NA	NA	NA
WP_002495543.1\|1739347_1740634_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_063964225.1\|1741064_1742096_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
1742515:1742533	attL	NA	NA	NA	NA
WP_019235983.1\|1742845_1743667_-	hypothetical protein	NA	NA	NA	NA
WP_002455767.1\|1743833_1744292_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_000855537.1\|1744557_1745199_-	fusidic acid resistance EF-G-binding protein FusB	NA	NA	NA	NA
WP_012085750.1\|1746114_1746546_-	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_012085746.1\|1746862_1747513_-	hypothetical protein	Q0H269	Geobacillus_phage	2.4e-21	37.4
WP_012085744.1\|1748620_1748947_-	hypothetical protein	A0A2H4JB14	uncultured_Caudovirales_phage	1.3e-52	94.4
WP_012085743.1\|1748943_1749261_-	hypothetical protein	A0A2H4JEA5	uncultured_Caudovirales_phage	3.6e-47	88.6
WP_012085740.1\|1749257_1749791_-	hypothetical protein	A0A2H4JB26	uncultured_Caudovirales_phage	3.2e-88	92.7
WP_002467963.1\|1749851_1750325_-\|terminase	phage terminase small subunit P27 family	A0A2H4JB21	uncultured_Caudovirales_phage	8.3e-80	96.8
WP_012085738.1\|1751728_1752184_-	hypothetical protein	NA	NA	NA	NA
WP_012085736.1\|1752196_1752835_-	hypothetical protein	A0A2H4JFF8	uncultured_Caudovirales_phage	1.2e-73	68.9
WP_012085734.1\|1752794_1753004_-	hypothetical protein	NA	NA	NA	NA
WP_012085733.1\|1753016_1753484_-	hypothetical protein	NA	NA	NA	NA
WP_012085731.1\|1753483_1753759_-	hypothetical protein	Q4ZE68	Staphylococcus_phage	3.7e-32	72.2
WP_012085729.1\|1753745_1754549_-	bifunctional DNA primase/polymerase	A0A1W6JPC1	Staphylococcus_phage	3.2e-124	78.7
WP_063964226.1\|1754714_1756322_-	hypothetical protein	A0A1W6JPF4	Staphylococcus_phage	2.1e-239	76.9
WP_063964227.1\|1756381_1756678_-	DUF1474 family protein	A0A1W6JPG5	Staphylococcus_phage	1.4e-32	73.5
WP_047511716.1\|1756689_1756896_-	hypothetical protein	A0A2H4JHP9	uncultured_Caudovirales_phage	3.8e-29	98.5
WP_012085720.1\|1756900_1757305_-	hypothetical protein	A0A2H4JBF1	uncultured_Caudovirales_phage	2.9e-65	94.0
WP_032604679.1\|1757294_1757519_-	hypothetical protein	A0A2H4JD47	uncultured_Caudovirales_phage	5.7e-23	84.1
WP_047511713.1\|1757530_1757845_-	helix-turn-helix domain-containing protein	A0A2H4JHK0	uncultured_Caudovirales_phage	1.4e-46	91.3
WP_102961623.1\|1757848_1758028_-	helix-turn-helix transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	2.0e-18	79.7
WP_037551234.1\|1758260_1758788_+	helix-turn-helix domain-containing protein	A0A1W6JPB6	Staphylococcus_phage	8.4e-65	70.9
WP_058586732.1\|1758796_1759972_+\|integrase	site-specific integrase	A0A2H4JFF0	uncultured_Caudovirales_phage	8.1e-217	97.4
WP_001830447.1\|1760040_1761660_-	chaperonin GroEL	A0A240F779	uncultured_virus	4.4e-157	54.0
1760040:1760058	attR	NA	NA	NA	NA
WP_001830378.1\|1761715_1762000_-	co-chaperone GroES	A0A221S386	uncultured_virus	1.5e-12	43.0

DBSCAN-SWA_9

1772845 : 1906238

148

Staphylococcus_phage(96.53%)

tail,terminase,integrase,holin,transposase

attL 1794235:1794256|attR 1908019:1908037

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002477475.1\|1772845_1774096_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	9.7e-35	29.7
WP_002469006.1\|1774529_1774754_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_001260014.1\|1775634_1777173_-	recombinase family protein	A0A0N9RZT8	Staphylococcus_phage	5.3e-277	100.0
WP_002504503.1\|1777162_1777744_-	DNA-binding protein	A0A0N9SK69	Staphylococcus_phage	3.8e-103	100.0
WP_001130902.1\|1777945_1778539_-	RusA family crossover junction endodeoxyribonuclease	A0A0N7GFG7	Staphylococcus_phage	7.9e-112	100.0
WP_002504504.1\|1778522_1778918_-	hypothetical protein	A0A0N9RRM7	Staphylococcus_phage	5.1e-67	100.0
WP_002504505.1\|1778919_1779666_-	NTP pyrophosphohydrolase	A0A0N9SIY2	Staphylococcus_phage	5.6e-139	100.0
WP_002504506.1\|1779678_1779918_-	hypothetical protein	A0A0N9S8B1	Staphylococcus_phage	6.7e-38	100.0
WP_002504507.1\|1779933_1780182_-	thioredoxin family protein	A0A0N9SGY3	Staphylococcus_phage	1.8e-41	100.0
WP_002504508.1\|1780222_1780825_-	AAA family ATPase	A0A0N9RTZ3	Staphylococcus_phage	4.0e-111	100.0
WP_002504509.1\|1780852_1781875_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N9SK77	Staphylococcus_phage	1.1e-198	100.0
WP_071813268.1\|1781920_1782277_-	ribonucleoside-diphosphate reductase	A0A2H4J2N6	uncultured_Caudovirales_phage	5.9e-38	60.2
WP_002504510.1\|1782467_1783292_-	HNH endonuclease	A0A0N9SHZ0	Staphylococcus_phage	2.7e-158	100.0
WP_002504511.1\|1783445_1786355_-	intein-containing class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A0N7GFG8	Staphylococcus_phage	0.0e+00	100.0
WP_002504512.1\|1786376_1786823_-	hypothetical protein	A0A0N9STF9	Staphylococcus_phage	4.0e-76	100.0
WP_002504513.1\|1786822_1787236_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A0N9RZU5	Staphylococcus_phage	1.8e-70	99.3
WP_002504514.1\|1787265_1787418_-	hypothetical protein	A0A0N9SK94	Staphylococcus_phage	1.2e-21	100.0
WP_002504515.1\|1787436_1788138_-	hypothetical protein	A0A0N9RRN5	Staphylococcus_phage	4.2e-128	99.6
WP_002504516.1\|1788149_1788659_-	siphovirus Gp157 family protein	A0A0N9SIY9	Staphylococcus_phage	2.1e-84	100.0
WP_002504517.1\|1788784_1789381_-	hypothetical protein	A0A0N9S8C0	Staphylococcus_phage	1.9e-57	92.1
WP_000824898.1\|1789380_1789611_-	hypothetical protein	A0A0N9SGZ7	Staphylococcus_phage	1.8e-32	100.0
WP_000356944.1\|1789624_1789807_-	hypothetical protein	A0A0N7GFG9	Staphylococcus_phage	3.1e-27	100.0
WP_000792728.1\|1789809_1790163_-	hypothetical protein	A0A0N9RU04	Staphylococcus_phage	1.2e-59	100.0
WP_002504518.1\|1790195_1791194_-	DNA cytosine methyltransferase	A0A0N9SK84	Staphylococcus_phage	1.8e-193	99.7
WP_002504519.1\|1791208_1791895_-	methyltransferase domain-containing protein	A0A0N9SHZ9	Staphylococcus_phage	5.9e-127	100.0
WP_002504520.1\|1791884_1792076_-	hypothetical protein	A0A0N9STH2	Staphylococcus_phage	1.0e-33	100.0
WP_002504521.1\|1792068_1792680_-	nucleoside 2-deoxyribosyltransferase	A0A0N9RZV9	Staphylococcus_phage	2.8e-112	100.0
WP_002504522.1\|1792694_1792877_-	hypothetical protein	A0A0N9SKA8	Staphylococcus_phage	1.4e-27	100.0
WP_000865652.1\|1792876_1793128_-	hypothetical protein	A0A0N9RRP5	Staphylococcus_phage	3.8e-39	100.0
WP_000937287.1\|1793150_1793456_-	hypothetical protein	A0A0N7GFH0	Staphylococcus_phage	1.8e-51	100.0
WP_002504525.1\|1793436_1793724_-	hypothetical protein	A0A0N9SIZ8	Staphylococcus_phage	4.4e-44	100.0
WP_002504526.1\|1793716_1793983_-	hypothetical protein	A0A0N9S8D1	Staphylococcus_phage	2.9e-42	100.0
WP_000119719.1\|1793994_1794168_-	hypothetical protein	A0A0N9SH07	Staphylococcus_phage	8.9e-24	100.0
1794235:1794256	attL	NA	NA	NA	NA
WP_002504527.1\|1794281_1794671_-	hypothetical protein	A0A0N9RU12	Staphylococcus_phage	1.1e-50	100.0
1794235:1794256	attL	NA	NA	NA	NA
WP_010959221.1\|1794758_1796057_-	ATP-dependent DNA ligase	A0A0N9SK95	Staphylococcus_phage	1.3e-244	100.0
WP_002504529.1\|1796066_1796381_-	hypothetical protein	A0A0N9SI08	Staphylococcus_phage	5.4e-51	100.0
WP_002504530.1\|1796518_1796899_-	hypothetical protein	A0A0N9STI1	Staphylococcus_phage	4.2e-50	99.2
WP_002504531.1\|1797010_1799497_-	hypothetical protein	A0A0N7GFH1	Staphylococcus_phage	0.0e+00	100.0
WP_002504532.1\|1799959_1801408_-	PHP domain-containing protein	A0A0N9SKC7	Staphylococcus_phage	5.7e-281	99.8
WP_002504533.1\|1801420_1801795_-	hypothetical protein	A0A0N9RRQ3	Staphylococcus_phage	7.3e-63	100.0
WP_002504534.1\|1801961_1802522_+	hypothetical protein	A0A0N9SJ02	Staphylococcus_phage	4.3e-67	100.0
WP_002504535.1\|1802874_1803279_+	YolD-like family protein	A0A0N9S8D9	Staphylococcus_phage	1.5e-74	100.0
WP_002504537.1\|1803526_1804168_-	hypothetical protein	A0A0N9RU21	Staphylococcus_phage	2.6e-60	100.0
WP_002504538.1\|1804273_1804996_-	hypothetical protein	A0A0N7GFH2	Staphylococcus_phage	2.5e-91	100.0
WP_000686449.1\|1805104_1805905_-	metallophosphoesterase	A0A0N9SKA2	Staphylococcus_phage	4.0e-151	100.0
WP_010959224.1\|1805908_1806403_-	hypothetical protein	A0A0N9SI15	Staphylococcus_phage	6.2e-86	100.0
WP_000755772.1\|1806459_1806729_-	hypothetical protein	A0A0N9STI7	Staphylococcus_phage	6.9e-39	100.0
WP_002504556.1\|1806712_1806904_-	hypothetical protein	A0A0N9RZX7	Staphylococcus_phage	3.9e-20	88.9
WP_002504557.1\|1807206_1807602_-	type II toxin-antitoxin system death-on-curing family toxin	A0A0N9SKD8	Staphylococcus_phage	1.0e-67	100.0
WP_002504558.1\|1807601_1807832_-	addiction module antitoxin	A0A0N9RRQ9	Staphylococcus_phage	1.7e-33	100.0
WP_002504559.1\|1807994_1808513_-	metallophosphoesterase	A0A0N9SJ06	Staphylococcus_phage	2.8e-97	99.4
WP_002504560.1\|1808512_1809163_-	hypothetical protein	A0A0N7GFH3	Staphylococcus_phage	3.1e-117	100.0
WP_002504561.1\|1809162_1809480_-	hypothetical protein	A0A0N9S8E9	Staphylococcus_phage	3.7e-52	100.0
WP_002504562.1\|1809472_1810198_-	metallophosphoesterase	A0A0N9SH20	Staphylococcus_phage	1.2e-138	99.6
WP_002504563.1\|1810197_1810419_-	hypothetical protein	A0A0N9RU28	Staphylococcus_phage	1.3e-35	100.0
WP_002504564.1\|1810438_1810615_-	hypothetical protein	A0A0N9SKB9	Staphylococcus_phage	1.1e-24	100.0
WP_002504565.1\|1810607_1811150_-	hypothetical protein	A0A0N9SI25	Staphylococcus_phage	2.7e-98	100.0
WP_002504566.1\|1811165_1811438_-	hypothetical protein	A0A0N9STJ5	Staphylococcus_phage	2.7e-43	100.0
WP_002504567.1\|1811463_1811619_-	transcriptional regulator	A0A0N9RZY5	Staphylococcus_phage	1.7e-18	100.0
WP_002504568.1\|1811615_1811900_-	hypothetical protein	A0A0N7GFH4	Staphylococcus_phage	5.0e-48	100.0
WP_001187008.1\|1811915_1812101_-	hypothetical protein	A0A0N9SKE7	Staphylococcus_phage	1.5e-24	100.0
WP_002504569.1\|1812085_1812265_-	hypothetical protein	A0A0N9RRR6	Staphylococcus_phage	2.1e-23	100.0
WP_002504570.1\|1812280_1812763_-	hypothetical protein	A0A0N9SJ15	Staphylococcus_phage	3.4e-73	100.0
WP_002504571.1\|1812764_1812953_-	Lar family restriction alleviation protein	A0A0N9S8F9	Staphylococcus_phage	8.2e-31	100.0
WP_002504572.1\|1812959_1813163_-	hypothetical protein	A0A0N9SH33	Staphylococcus_phage	5.7e-30	100.0
WP_002504573.1\|1813167_1813434_-	hypothetical protein	A0A0N9RU37	Staphylococcus_phage	1.0e-42	100.0
WP_002504574.1\|1813455_1813731_-	hypothetical protein	A0A0N9SKC5	Staphylococcus_phage	4.5e-46	100.0
WP_002504575.1\|1813753_1813993_-	hypothetical protein	A0A0N7GFH5	Staphylococcus_phage	1.7e-36	100.0
WP_000359469.1\|1814014_1814239_-	hypothetical protein	A0A0N9SI40	Staphylococcus_phage	2.0e-31	100.0
WP_000862563.1\|1814244_1814592_-	thermonuclease family protein	A0A0N9STK3	Staphylococcus_phage	4.4e-62	100.0
WP_002504576.1\|1814588_1814999_-	hypothetical protein	A0A0N9RZZ6	Staphylococcus_phage	7.0e-75	100.0
WP_000312937.1\|1815038_1815302_-	hypothetical protein	A0A0N9SKF2	Staphylococcus_phage	6.9e-44	100.0
WP_002504577.1\|1815304_1815613_-	hypothetical protein	A0A0N9RRS4	Staphylococcus_phage	5.8e-50	100.0
WP_002504579.1\|1815904_1816180_-	hypothetical protein	A0A0N7GFH6	Staphylococcus_phage	5.0e-45	100.0
WP_002504580.1\|1816192_1816390_-	hypothetical protein	A0A0N9SH39	Staphylococcus_phage	4.0e-28	100.0
WP_002504581.1\|1816400_1817447_-	hypothetical protein	A0A0N9RU46	Staphylococcus_phage	4.8e-197	100.0
WP_001106022.1\|1817490_1818165_+\|transposase	IS6-like element IS257 family transposase	A0A0N9SKD3	Staphylococcus_phage	6.2e-129	100.0
WP_000195429.1\|1818283_1819456_+\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_001028144.1\|1819585_1821025_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	A0A1X9I6C2	Streptococcus_phage	3.8e-285	100.0
WP_000393259.1\|1821025_1821418_-	GNAT family N-acetyltransferase	A0A0N7GFH7	Staphylococcus_phage	6.9e-72	100.0
WP_000195429.1\|1821474_1822647_-\|transposase	IS256-like element IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
WP_042742622.1\|1822724_1823228_-	trimethoprim-resistant dihydrofolate reductase DfrC	A0A0N9S8H6	Staphylococcus_phage	3.2e-90	100.0
WP_000282655.1\|1823269_1824226_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.1e-190	100.0
WP_001106019.1\|1824339_1825014_+\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	8.1e-129	100.0
WP_010959235.1\|1825635_1827402_-	single-stranded DNA-binding protein	A0A0N9SK20	Staphylococcus_phage	0.0e+00	100.0
WP_002504675.1\|1827404_1828517_-	hypothetical protein	A0A0N9RRG7	Staphylococcus_phage	2.8e-219	100.0
WP_002504676.1\|1828533_1830066_-	helicase DnaB	A0A0N9SIU7	Staphylococcus_phage	5.6e-295	100.0
WP_002504677.1\|1830087_1830606_-	hypothetical protein	A0A0N9S850	Staphylococcus_phage	2.1e-92	100.0
WP_002504678.1\|1830682_1831651_-	ATP-binding protein	A0A0N9SGS5	Staphylococcus_phage	5.3e-182	100.0
WP_063964230.1\|1831774_1832734_-	hypothetical protein	A0A0N7GFF9	Staphylococcus_phage	3.3e-168	99.7
WP_000668931.1\|1832777_1833458_-	hypothetical protein	A0A0N9RTS7	Staphylococcus_phage	2.0e-127	100.0
WP_002504679.1\|1833475_1833964_-	hypothetical protein	A0A0N9SK25	Staphylococcus_phage	8.1e-54	100.0
WP_002504680.1\|1833979_1834228_-	hypothetical protein	A0A0N9SHT9	Staphylococcus_phage	2.0e-40	100.0
WP_002504681.1\|1834386_1835391_-	hypothetical protein	A0A0N9ST56	Staphylococcus_phage	3.1e-185	100.0
WP_002504682.1\|1835402_1836683_-	hypothetical protein	A0A0N9RZM2	Staphylococcus_phage	6.5e-236	100.0
WP_002504683.1\|1836993_1838037_-\|integrase	site-specific integrase	A0A0N9SK33	Staphylococcus_phage	3.8e-194	100.0
WP_002504685.1\|1838720_1839149_-	hypothetical protein	A0A0N9RRH5	Staphylococcus_phage	5.0e-76	100.0
WP_012099556.1\|1839226_1839748_-	hypothetical protein	A0A0N7GFG0	Staphylococcus_phage	5.2e-91	100.0
WP_010959239.1\|1839747_1840200_-	hypothetical protein	A0A0N9SIV3	Staphylococcus_phage	6.7e-79	100.0
WP_010959240.1\|1840315_1840996_-	hypothetical protein	A0A0N9S858	Staphylococcus_phage	4.6e-124	100.0
WP_002504623.1\|1841024_1841288_-	hypothetical protein	A0A0N9SGT4	Staphylococcus_phage	3.4e-43	100.0
WP_002504624.1\|1841380_1841704_-	hypothetical protein	A0A0N9RTT7	Staphylococcus_phage	1.5e-56	100.0
WP_002504625.1\|1841748_1842408_-	antirestriction protein ArdA	A0A0N9SK30	Staphylococcus_phage	9.4e-122	100.0
WP_010959241.1\|1842560_1842950_-	hypothetical protein	A0A0N9SHU5	Staphylococcus_phage	3.9e-67	100.0
WP_010959242.1\|1843086_1843347_-	hypothetical protein	A0A0N9ST70	Staphylococcus_phage	7.1e-41	100.0
WP_002504552.1\|1843421_1843637_-	hypothetical protein	A0A0N7GFG1	Staphylococcus_phage	2.2e-35	100.0
WP_002504554.1\|1843816_1844101_-	hypothetical protein	A0A0N9SK40	Staphylococcus_phage	1.6e-46	100.0
WP_010959243.1\|1845453_1845615_-	hypothetical protein	NA	NA	NA	NA
1844121:1844142	attR	NA	NA	NA	NA
WP_002504834.1\|1847995_1848871_-	hypothetical protein	A0A0N9SIV7	Staphylococcus_phage	4.8e-166	100.0
1844121:1844142	attR	NA	NA	NA	NA
WP_104832450.1\|1849835_1851014_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	5.7e-61	37.2
WP_002504833.1\|1852887_1854384_+	hypothetical protein	A0A0N9SGU3	Staphylococcus_phage	2.3e-269	100.0
WP_002504832.1\|1854643_1854973_+	HU family DNA-binding protein	A0A0N9RTU9	Staphylococcus_phage	1.7e-52	100.0
WP_000057341.1\|1854998_1855184_+	YonK family protein	A0A0N7GFG2	Staphylococcus_phage	1.7e-25	100.0
WP_002504831.1\|1855192_1856377_+	hypothetical protein	A0A0N9SK37	Staphylococcus_phage	1.3e-222	100.0
WP_001007716.1\|1858071_1858956_+	hypothetical protein	A0A0N9SHV5	Staphylococcus_phage	4.5e-172	100.0
WP_002504830.1\|1858948_1860748_+\|terminase	terminase	A0A0N9RZP6	Staphylococcus_phage	6.8e-207	100.0
WP_000389594.1\|1860765_1862328_+	hypothetical protein	A0A0N9SK48	Staphylococcus_phage	6.6e-299	100.0
WP_002504829.1\|1862320_1863700_+	hypothetical protein	A0A0N9RRJ7	Staphylococcus_phage	2.0e-246	100.0
WP_002504828.1\|1863727_1864168_+	hypothetical protein	A0A0N9SIW4	Staphylococcus_phage	1.6e-77	100.0
WP_002504827.1\|1864206_1865208_+	hypothetical protein	A0A0N9S885	Staphylococcus_phage	3.3e-110	100.0
WP_000985467.1\|1865282_1865834_+	hypothetical protein	A0A0N9SGV3	Staphylococcus_phage	1.5e-80	100.0
WP_000134539.1\|1865851_1866286_+	hypothetical protein	A0A0N9RTW0	Staphylococcus_phage	3.5e-69	100.0
WP_042742626.1\|1866275_1866593_+	hypothetical protein	A0A0N9SK47	Staphylococcus_phage	7.5e-53	99.0
WP_000384369.1\|1866596_1867262_+	hypothetical protein	A0A0N9SHW2	Staphylococcus_phage	1.3e-123	100.0
WP_001177112.1\|1867251_1867773_+	hypothetical protein	A0A0N9ST98	Staphylococcus_phage	2.0e-95	100.0
WP_000391855.1\|1867778_1868651_+	hypothetical protein	A0A0N9RZR7	Staphylococcus_phage	1.5e-159	100.0
WP_002504825.1\|1868689_1869481_+	hypothetical protein	A0A0N7GFG4	Staphylococcus_phage	5.4e-140	100.0
WP_002504824.1\|1869564_1870122_+	hypothetical protein	A0A0N9SK55	Staphylococcus_phage	8.0e-98	99.5
WP_002504823.1\|1870121_1870595_+	hypothetical protein	A0A0N9RRK6	Staphylococcus_phage	3.5e-86	100.0
WP_002504822.1\|1870610_1871627_+\|integrase	site-specific integrase	A0A0N9SIX3	Staphylococcus_phage	2.3e-196	99.7
WP_002504821.1\|1871723_1879997_+\|tail	phage tail tape measure protein	A0A0N9S894	Staphylococcus_phage	0.0e+00	99.8
WP_002504820.1\|1880018_1882100_+	hypothetical protein	A0A0N9SGW2	Staphylococcus_phage	0.0e+00	100.0
WP_002504819.1\|1882160_1890206_+	hypothetical protein	A0A0N9RTX0	Staphylococcus_phage	0.0e+00	100.0
WP_002504818.1\|1890208_1890583_+	hypothetical protein	A0A0N9SK58	Staphylococcus_phage	5.0e-64	100.0
WP_002504817.1\|1890575_1890743_+	hypothetical protein	A0A0N7GFG5	Staphylococcus_phage	3.1e-21	100.0
WP_002504816.1\|1890784_1893454_+	hypothetical protein	A0A0N9SHX2	Staphylococcus_phage	0.0e+00	99.9
WP_002504815.1\|1893560_1893962_+	hypothetical protein	A0A0N9STA8	Staphylococcus_phage	4.4e-66	100.0
WP_002504814.1\|1893943_1894456_+	hypothetical protein	A0A0N9RZS7	Staphylococcus_phage	8.5e-46	100.0
WP_002504813.1\|1894477_1894807_+\|holin	phage holin	A0A0N9SK62	Staphylococcus_phage	4.2e-54	100.0
WP_002504812.1\|1894858_1897252_+	SGNH/GDSL hydrolase family protein	A0A0N9RRL9	Staphylococcus_phage	0.0e+00	100.0
WP_002504811.1\|1897328_1898831_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGX6	Staphylococcus_phage	3.4e-284	100.0
WP_002504810.1\|1898906_1899107_-	hypothetical protein	A0A0N9RTY2	Staphylococcus_phage	1.2e-27	100.0
WP_002504809.1\|1899486_1899663_-	hypothetical protein	A0A0N9SK66	Staphylococcus_phage	1.4e-24	100.0
WP_002504808.1\|1899801_1901448_-	hypothetical protein	A0A0N9SHY1	Staphylococcus_phage	0.0e+00	100.0
WP_002504807.1\|1901590_1902196_-	LPXTG cell wall anchor domain-containing protein	A0A0N9STB7	Staphylococcus_phage	3.8e-77	100.0
WP_002497516.1\|1902899_1903181_-	PH domain-containing protein	NA	NA	NA	NA
WP_002468998.1\|1903321_1903957_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_002504805.1\|1904303_1906238_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2H4UUX5	Bodo_saltans_virus	5.9e-47	26.8
1908019:1908037	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT571449

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection