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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT576034 Propionibacterium freudenreichii isolate PFRJS18 chromosome I 4 crisprs csa3,cas3,DEDDh,DinG,WYL 0 2 3 0

Results visualization

1. NZ_LT576034
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576034_1 1192272-1192369 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576034_2 2287465-2287571 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576034_3 2372694-2372805 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT576034_4 2605621-2605732 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT576034_3 3.1|2372734|32|NZ_LT576034|CRISPRCasFinder 2372734-2372765 32 NZ_KU254577 Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence 93743-93774 8 0.75
NZ_LT576034_3 3.1|2372734|32|NZ_LT576034|CRISPRCasFinder 2372734-2372765 32 CP031732 Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence 144379-144410 8 0.75
NZ_LT576034_3 3.1|2372734|32|NZ_LT576034|CRISPRCasFinder 2372734-2372765 32 NZ_AP015031 Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence 216038-216069 8 0.75
NZ_LT576034_4 4.1|2605661|32|NZ_LT576034|CRISPRCasFinder 2605661-2605692 32 NZ_AP014579 Burkholderia sp. RPE67 plasmid p1, complete sequence 479090-479121 8 0.75

1. spacer 3.1|2372734|32|NZ_LT576034|CRISPRCasFinder matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

2. spacer 3.1|2372734|32|NZ_LT576034|CRISPRCasFinder matches to CP031732 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

3. spacer 3.1|2372734|32|NZ_LT576034|CRISPRCasFinder matches to NZ_AP015031 (Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

4. spacer 4.1|2605661|32|NZ_LT576034|CRISPRCasFinder matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

actgcaccgtcggatcagccggataaccattc	CRISPR spacer
attgcgccgacggatcagccggatatcatgta	Protospacer
*.***.*** *************** *   * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 97089 : 151916 43 Catovirus(12.5%) integrase,transposase attL 141307:141366|attR 158125:158934
DBSCAN-SWA_2 2189859 : 2218144 26 Mycobacterium_phage(40.0%) protease,transposase NA
DBSCAN-SWA_3 2484610 : 2539310 54 Mycobacterium_phage(50.0%) holin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage