CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT576038	Propionibacterium freudenreichii isolate PFRJS11 chromosome I	3 crisprs	csa3,cas3,WYL,DinG,DEDDh	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT576038_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT576038_1

1807686-1807784

Orphan

Consensus_repeat	Method
GGTCAGCCCAACAAGCTGACCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT576038_1

>merge|NZ_LT576038|1|1807686-1807784|CRISPRCasFinder
GGTCAGCTCAAGGAGCTGACCCACGGGGTCTGCAACGGGGTCAGCCCAACAAGCTGACCCACTGGATCCACCACAGGTCAGCCCAACAAGCTGACCCAC

>NZ_LT576038|1|1|1807686-1807784|CRISPRCasFinder
GGTCAGCTCAAGGAGCTGACCCAC	GGGGTCTGCAACGGGGTCAGCCCAACAAGCTGACCCACTGGATCCACCACA
GGTCAGCCCAACAAGCTGACCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT576038.1\|WP_097807355.1\|1811802_1812690_-\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|370378
NZ_LT576038.1\|WP_013160601.1\|1794517_1795378_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|237637
NZ_LT576038.1\|WP_055345449.1\|1814743_1815772_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|183235
NZ_LT576038.1\|WP_013160600.1\|1795451_1797005_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_LT576038.1\|WP_013160590.1\|1807940_1808639_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_LT576038.1\|WP_013160603.1\|1793020_1794007_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|235468
NZ_LT576038.1\|WP_013160579.1\|1820782_1822303_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_LT576038.1\|WP_013160596.1\|1801946_1803200_+\|cardiolipin-synthase-B	unknown	unknown	gnl\|CDD\|224419
NZ_LT576038.1\|WP_048768960.1\|1815768_1816827_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_LT576038.1\|WP_013160602.1\|1794188_1794512_-\|DUF3017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378602
NZ_LT576038.1\|WP_013160588.1\|1810175_1810511_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_LT576038.1\|WP_060761610.1\|1803256_1804012_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_LT576038.1\|WP_097807356.1\|1819718_1820756_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380488
NZ_LT576038.1\|WP_081083471.1\|1797126_1797975_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_LT576038.1\|WP_013160592.1\|1806145_1807162_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_LT576038.1\|WP_013160594.1\|1804008_1805049_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_LT576038.1\|WP_013160597.1\|1799320_1801810_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_LT576038.1\|WP_013160585.1\|1812894_1814448_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_LT576038.1\|WP_055346004.1\|1810810_1811752_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176205
NZ_LT576038.1\|WP_036939900.1\|1808635_1809829_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|226951

Protein	Function_ID	Function_description	E-value
NZ_LT576038.1\|WP_097807355.1\|1811802_1812690_-\|DUF1963-domain-containing-protein	gnl\|CDD\|370378	pfam09234, DUF1963, Domain of unknown function (DUF1963). This domain is found in a set of hypothetical bacterial proteins. Its exact function has not, as yet, been described.	6.37814e-44
NZ_LT576038.1\|WP_013160601.1\|1794517_1795378_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|237637	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional.	3.49323e-163
NZ_LT576038.1\|WP_055345449.1\|1814743_1815772_-\|sugar-ABC-transporter-permease	gnl\|CDD\|183235	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional.	3.17466e-90
NZ_LT576038.1\|WP_013160600.1\|1795451_1797005_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_LT576038.1\|WP_013160590.1\|1807940_1808639_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.02291e-65
NZ_LT576038.1\|WP_013160603.1\|1793020_1794007_+\|malate-dehydrogenase	gnl\|CDD\|235468	PRK05442, PRK05442, malate dehydrogenase; Provisional.	0
NZ_LT576038.1\|WP_013160579.1\|1820782_1822303_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_LT576038.1\|WP_013160596.1\|1801946_1803200_+\|cardiolipin-synthase-B	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	7.67668e-76
NZ_LT576038.1\|WP_048768960.1\|1815768_1816827_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	5.04895e-61
NZ_LT576038.1\|WP_013160602.1\|1794188_1794512_-\|DUF3017-domain-containing-protein	gnl\|CDD\|378602	pfam11222, DUF3017, Protein of unknown function (DUF3017). This bacterial family of proteins with unknown function appear to be restricted to Actinobacteria.	2.63412e-16
NZ_LT576038.1\|WP_013160588.1\|1810175_1810511_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	7.54301e-21
NZ_LT576038.1\|WP_060761610.1\|1803256_1804012_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	2.51766e-138
NZ_LT576038.1\|WP_097807356.1\|1819718_1820756_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380488	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	4.52267e-102
NZ_LT576038.1\|WP_081083471.1\|1797126_1797975_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.37776e-90
NZ_LT576038.1\|WP_013160592.1\|1806145_1807162_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.89977e-74
NZ_LT576038.1\|WP_013160594.1\|1804008_1805049_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.00184e-95
NZ_LT576038.1\|WP_013160597.1\|1799320_1801810_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LT576038.1\|WP_013160585.1\|1812894_1814448_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_LT576038.1\|WP_055346004.1\|1810810_1811752_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176205	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	1.37451e-126
NZ_LT576038.1\|WP_036939900.1\|1808635_1809829_-\|ATP-binding-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.63584e-25

>NZ_LT576038.1|WP_013160592.1|1806145_1807162_-|ABC-transporter-substrate-binding-protein
MSSTRFTNRGTLAVVALSAALLAGGLTACSSGAGSDTSPATHSAAALSSIEITDNNGTHTVTTPPQSVVALDNRTFETLSQWGVGLKAAAVSLMPSTISYTTDKSIVDIGNHREPNLEAIVAAKPDLVINGQRFTQYTDEIKSLVPDTTILDLDPRDGEPFDQELKRQTTVLGEVFGKQAEAKKLNDDLDGAIARVKKAYKPADTVMAVNTSGGEIGFIAPHVGRALGPVYDFAGLTPALQVQGSSKDHKGDDISVEAIASSNPTWILVMDRDAAISADDPSYKPASELLKNSQALAGVTAVKEGNIVTMPADTYTNESIQTYTEFLNDFAAALESRA
>NZ_LT576038.1|WP_013160594.1|1804008_1805049_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MVVDTPTRETPPVRTHTGAFATRAARRRYLVVVVGLAVAAVAASFGLLAWANPMPVGSRGFWKIAQRRLASLVVIAVVAFSQALATVAFQTITNNRIITPSIMGFESLYRAVQTSAVYFLGVAGVVALQGVPQFLIQVAVMVALAVALYGTLLSGRHANLQVMLLIGIVIGAGLGSVATFMQRMLSPSEFDVLSARMFGNISNAEASYLPVAVPLCLAAGLGLWVRSQRLNVMALGASAATGLGLNHRRETMLGLTLVSVLIAVSTALVGPMTFFGFLVATLTYSLAGTHDHRRIFPVAVLTGFVVLAGAYFVMRYVFYAQGMVSVIIELVGGTTFLIVLLRKGRL
>NZ_LT576038.1|WP_060761610.1|1803256_1804012_-|ATP-binding-cassette-domain-containing-protein
MIALADVLKKYSPEVCIGPVDLHIPDGGITALVGPNGAGKSTLLTMIGRLLGLDTGVIEIAGYDVARTKSADLARVVSVLQQENHFVTRLTVRQLVGFGRFPCTHGRLSAADEELVDQALDFLALRDLEARYLDELSGGQRQRAYVAMVLAQDTEYVLLDEPLNNLDMRHSVQMMRHLHRAARELGRTIVIVLHDINFAGRYADHICAMKDGRVAAFGPSDEIMDSAVLTEVFDTPVDVVQGPHGPLAVYY
>NZ_LT576038.1|WP_013160596.1|1801946_1803200_+|cardiolipin-synthase-B
MRLPPATGRVVRNALLGILGAQLGAAGVLVAADNVRKHRAGPARFPRSAVTQARADDDLVSVYSYGEDLYNDMLTAIRRAKHTIFFETFIWKNDPIGQDFKQALIEAANRGVAVYIVYDQFANMVVRPSFFRFPDNIHVKRHPLVQSVAFWNLRNSGRDHRKILVVDSRVAFMGGYNIGSRYARTWRDTHARFEGPSVADFENAFVDYWNLRPVHLLSSQRSSMPELPDTSQRRWDGSVRLSRNTPRWAVFPIRNMYLEAIDKAQRNIWLTSAYLIPDDDLRTALARAAQRGVDVRIIVPAQSNHVIADWLSRGYYTGLLRDGIRLFLFHNAMVHAKTATIDGHWSTIGTANIDRLSLAGNYEVNAEITSPQVATALERIFLTDQSNCTEMDLARWERRSIVAKGTEWLLAPWRPLF
>NZ_LT576038.1|WP_013160597.1|1799320_1801810_-|UvrD-helicase-domain-containing-protein
MTDQTPPDLFSAFDQRLSALGAPGSGEGFAPHTPHDAHDDAEALLHGLNPPQEQAVVHEGSPVLVVAGAGSGKTRVLTRRIAWLIAQRGVHPGSILAITFTNKAAAEMRSRVAELVGPRTRTMWVSTFHSACVRILRTELAEAPELGLRRNFSIYDDTDTKRLMTLVLRDQNLDTKKFPPRTVMGWISNAKNELLGPGAAAEQADNGNEELYAQAYEEYQRRLRAANAMDFDDLIMITVQLLHDHPDIREKYRRRFRQVLVDEYQDTNHAQYLLIRELCAPNEDQIDAPRVDPPELLVVGDSDQSIYAFRGADVRNILDFEQDFPGARTILLEQNYRSTQTILSAANAVIQHNSGRPVKKLWSDAGDGDKIIGWVADTEHDEARWVAEKIDELHDHQQAAYSDAAVFYRTNAQSRAFEEVFIRLGLPYRVVGGVRFYERREVRDALAYLRAIANPADDVSIRRIINVPKRAIGARAETALEMFAVSQSIPFSQAVDRAAEVPGLATRSRHQVESFASMMAGFRGLVAAGSSADEVVAAVLKDSGLLDELKDSKDPQDETRVENLVELVAVAQEFVAQAHTLDLSAGLRPDAPGDQDAPELADELVAGMPEADDSLGAFLERIALVADSDQIPDSDPDSAGVVTLMTLHTAKGLEFDNVFLTGMEDGIFPHMRALADPAELSEERRLAYVGITRARRRLFMSRAAVRTVWGQPQYNPPSRFLEEIPAELIDWQRTGADLTSWGSSASARTASARRQTSTGGPVFGSGHGDLPRTKTVASLEPGDRVLHSSFGMGTVVAAAGSGNNATADVDFGSAGVKRLALRFAPLEKL
>NZ_LT576038.1|WP_081083471.1|1797126_1797975_-|phosphoribosylglycinamide-formyltransferase
MCSSSSHVAALPHRALLPNRQAPARSVRRCVPCCVVAGRRRCPRRPGPTTTTPPTRHRPLIPAAGQRTRCTATKGRLPGVAYRVVVLVSGSGTLLQALLDAQAAGALDARIVAVGSDQPGCRALARAQDAGVDTFVVPMTTLLPRGSAARQAWDEEFARAVDACSPDLIVLAGFMKLLGEPFMRRFAGRVINTHPAMLPAFPGAHAVRDALTAGATTTGSSIFWVDDGVDTGSLIVQEPVPVHPGDDEDTLHERIKVTERRLLVATVNELARRAPAGDPTSV
>NZ_LT576038.1|WP_013160600.1|1795451_1797005_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTDPTRAPIRRALVSVYDKTGLEELGRALAAAGVEIVSTGSTARKLSEAGVEVVPVEQVTGFPETLDGRVKTLHPAVHAGILADRRLESHRRQLDELGIKPFDLVVSNLYPFSQTVASGADFDECVEQIDIGGPSMVRAAAKNHPSVAIITSPDQYSQLTDALAQGGFTLAERRVLAAKAFAHTAAYDASVASWFAEQTTDEGLPGFIGQAATKLHDLRYGENSHQRAAVYAAEGAAPGLVGAEQLGGKEMSYNNYTDADAARRAAYDFSGPAVAIIKHANPCGIAVGSDIADAHAKAHACDPVSAYGGVIAANQIVTLAMAQQVKPIFTEVIVAPDFEPAALELLQTKKNLRILKAEDFHFDKFLWREISGGLLASDPDRLDAPGDQTSGWKLVAGPAADAAMLSDLLFAWKACRSVKSNAILLAHDGASVGVGMGQVNRVDSCRLAVSRAGDRAKGSVAASDAFFPFSDGPQILLDAGVSAIVQPGGSIRDEETIEAASKAGVTMYFTGNRHFFH
>NZ_LT576038.1|WP_013160601.1|1794517_1795378_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MTAQRLDGKAVAAQIKIELKQRVDALREQGVIPGLGTVLVGDDPASQIYVNGKHRDCEQVGIESYRVDLPADATPEQVERSIRVLNDSTMCTGYIVQLPLPPQIDPNWALELIDPDKDADGLTSDNLGKLVLGRSGVLPCTPRGIVELLRRYEIPLDGAKVCVVGRGTTVGRPLGLLLTRRDVNATVTLCHTGTKNLAEETRQADIVIGAAGHPGLVTASMLKPGAVVVDVGVRRIEGKPVGDFTADVWDVASYVTPNPGGVGPMTRAMLLVNVVERAEQIAAQEQ
>NZ_LT576038.1|WP_013160602.1|1794188_1794512_-|DUF3017-domain-containing-protein
MTPAPPSSTKQPVAAPLKLDRLRAQWPLLLCLAFFVAGMAVTAAAHWRRGAVLMGAGLGLAGVLRLFLPPRLAGLLVVRRRWFDVLVGIVGGTTMCVLAILVPPLER
>NZ_LT576038.1|WP_013160603.1|1793020_1794007_+|malate-dehydrogenase
MSTTPVKVAVTGAAGQICYSLLFRIASGSLLGDTPIELRLLEITPALPRLEGVVMELDDCAFPNLAGVEIGDDPEKVFDGANLAMLVGAMPRKEGMDRSDLLGANGKIFTGQGKALNKVAADDVRILVTGNPANTNALIAKDNAPDIPDDRFSALTRLDHNRAKSMLAKKLGVNVGEVTNMTIWGNHSNTQFPDLFHTKVGGKNAYELVNDEAWYENTYIPEVAKRGGAVIKARGASSAASAANATVEAMHDWAVGTPANDWVSMSVVSDGSYGVPEGLISSFPVTCKDGKYEIVQGLDLNDFSKKKIAATVDELTKEQGEVREMGLI
>NZ_LT576038.1|WP_013160590.1|1807940_1808639_-|response-regulator-transcription-factor
MTSLPGPLTTDEPRPEGPRRVVLVDDHDIFRAGVRHELTAAAPDEIDVVGEAGDVEQAVKVITGTTPDVVLLDVHLPGGGGAEVVRQVHQIDPKITFLALSVSDAAEDVIAVIRAGARGYVTKSISTADLVEAIGRVATGDAVFSPRLAGFVLDAFSGSISVESIDEDLDRLSQREREVMKLIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNRHELTKWATDRKLV
>NZ_LT576038.1|WP_036939900.1|1808635_1809829_-|ATP-binding-protein
MRGSWLGGVCTGIADYLGSPVWPVRLCFVLLAMTAYLGVVAYAALWAFLPIKDEAAEQARAVRPARKPRSSRRQDLEVWLSIGLVLLLCLGLLVLSRLFGLGSIHAFFWPVVLAAVGIGLVWRQADQPEEEPDRLVPRWMAPLVSSSKWATVLRMGLGMTLVGASVLLVAYTQVDGPYLPAVLGMVALALAGFGVLTAPWMNRMRSNLARAHEEKLVADARADMAAHLHDSVLQTLALIQRQADDPKAVASLARRQERELREWLYGEAPGPRDFRAALRDAGAQVEDSSGVRVEVICVGDATLNDGLSAMILAAREAMMNSAKHSGADHIDVYAEVDDDHVELFVRDRGVGFDAEQIRADRMGVRRSIIERMERHGGTAQVRSAPGEGTEVKLEIAR
>NZ_LT576038.1|WP_013160588.1|1810175_1810511_+|PspC-domain-containing-protein
MRTAGAVQTPIQEEPMGTKQLVRRHDNRWIAGVAGGLADYWGIDALAVRLGFIILGLVTFGTAFWAYLICWLLIPDGVDGSKGLDAVKRTINGFRDKNDGPQDFNPYDDTK
>NZ_LT576038.1|WP_055346004.1|1810810_1811752_+|zinc-binding-dehydrogenase
MLAMVLDHPGGADTFRPEERPIPEATATHSVLEVMAFGVNHADLITRAGGSPDVRFPRVIGIEAVGRVHATSPASGLEVGQRVVTLMGGLGRDFDGSYQEYALVPNSQLYPVGIEMAWNRLATIPESFYTALGSLDRMHLTAGDALLIRGGTSSVGLAAMQLAKSFGVRVTSTTRSPGKIARLEALGADEVLVDAGTLPGTERFDGVLELVGAATLDDSMGHAAPRGCVVVTGGLGGQWTVPDFDPFSIRGYLTNFQSTEVNPALLRHMLTLVAQQGLSLPIVGEFPLPDVGRAHEALETSTEMGKIVVSVAH
>NZ_LT576038.1|WP_097807355.1|1811802_1812690_-|DUF1963-domain-containing-protein
MSQDLKQALFGVFDAVQKNAIKLDFGADPEPGEAGQSRLGGRPDVPRDFEWPRFQDKDDDSADANRPLTFLAQVNLADATRYDTEGLLPTAGVLSFFYEMETQEWGFDPRDKGSARVFFFEDPATLRPASAPDDLDDWFPDGQAISYRNMVDLPAWLGFTELPEEVRRTNPLPVPLTDIEWEDYDAMREEYGAPSEGDDAVTTKLLGHPDVVQNPMEAECEMVTRGMADGAEGEEISQELRDDIEKASRDWTLLFQMGTDSGLEFGDVGHINYWIKKQDLARRDFDKAWLILQCG
>NZ_LT576038.1|WP_013160585.1|1812894_1814448_-|glutamine-hydrolyzing-GMP-synthase
MPASHDLVLVVDYGAQYAQLIARRVREAHVYSEIVPHAMSVDEMVAKKPTAIILSGGPASVYVPDAPKVDPALFSTGIPVFGICYGFQLMAGALGGTVEHTGTSEYGRTSVAIDDTGVLLHDLDDISSVWMSHGDSVTAAPAGFASLARTAGAPIAAFEAPERKLAGVQWHPEVAHTERGQEVIEHFLFDFAGCKPTWTSSSIVDDQVSRIRAQVGDKRVLCALSGGVDSAVAAALVQRAIGDQLTCCFIDHGLLRKGEAEQVKHDFVQITGVDLVVADESERFLSALAGVSEPEAKRKIIGREFIRSFEDVARQIAGDKGIDFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDLQFTLIEPLRALFKDEVRAVGAELGLPDSMVWRQPFPGPGLGIRIVGEITQDRLDLLREADAIAREELTAAGLDREVWQMPVVLLADVHSVGVQGDGRTYGHPIVLRPVSSEDAMTADWSRLPYDLLEKISTRITNQCPEVNRVVLDVTSKPPATIEWE
>NZ_LT576038.1|WP_055345449.1|1814743_1815772_-|sugar-ABC-transporter-permease
MSAQTLNAAVPTRALPSWLKIDRKRIPTLASVVIFLIMIIYGQAAYGQTLTMSTASNLLINNAHLIILAVGMTFVILTGGIDLSVGAVIAFSSVLGAQLLNAGWNPVLVMGIIVVVGGLFGLASGVLVQYFRVQPIIATLAMMFLARGLASILSTTPIRLDDASGFRTLATQWKVIDGPKVNDLVITPNVLIAVVVVVAGFFILHRTRTGRTVYAIGGSEPSAELMGLPVNRTKYLIYVISGLCAGIASVVYTSKLGMAQNVTGVGWELDAIAAVVIGGTLLLGGAGYVLGSVLGALVLGLMNVLIARDGSIPPEATTIITGAILLLFVLLQRAVVKRDHND
>NZ_LT576038.1|WP_048768960.1|1815768_1816827_-|ABC-transporter-permease
MKAIVKNQYFWGIIALLLLIMVDVIKDPSFVRITVNNGNLYGSLIDILRGSAPVLMIAIGMTLVIATAGIDLSVGSLMAVSGAVSMEFLASAAHSGSTGAVLTALGLSLLVTVLLGAINGLLVSVVGLQPFITTLIMMMTGRGIAKVITGGQNTSARSDGFAWISTGTVFGFPVAFVIAIAIVALVALVVRRSALGMTIESVGINQRASRMAGIKPLYILFSVYVISGLLAGMAGVFATANVMTVEVSKTGMDMEMDAILAVVIGGTSLAGGRFSLGGSAIGALLITTLNRTVTFLNVPSAATPAFKAAVIIIVCLLQSERVRNLFKTLKRSRRVVEAAPARVEEVKEVVAA
>NZ_LT576038.1|WP_097807356.1|1819718_1820756_-|LacI-family-DNA-binding-transcriptional-regulator
MAAGTAPNIRDVAELAGVSHQTVSRVINDHPSIQPQTRARVEAAIKTLGYRPNSAARSLARMRTGRIGAIVDSPEHFGPMNTLRGVEVASRRAGYFLSSVSVDDDSVDAINQSLEFLLDQNVEGLCLIAPRLPLLEGIRRRGLQIPSVVIATDTAHLVDDNGLQASVDQELGTGMMVDYLLELGHTRIAHLSGPHDWGDARSRRATFEATLAAHGLTPAAIVEGDWSSDSGFAAGPGLIEGTGATAVFSANDQMALGLVHYLSEVGLRVPDDVSVVGFDNTPESAHMIPPLTTVRQNFEKLGEMAIGSLLARIKGARVERETLRTQPSLVVRSSAGPRPATQRSR
>NZ_LT576038.1|WP_013160579.1|1820782_1822303_-|L-arabinose-isomerase
MSHNIIPDLSQLKVLFLVGSQALYGEETLRQVDEQSEAILAQLRASSDIPVTIEPHQLLTDTDGIHQAVLAANADPSVIGVITWMHTFSPAKMWIRGLEALQKPLLHWHTQAGVALPYADLDFDFMNLNQSAHGDREFGYILTRLGIARKSVIGHVSDPRVTREIGWWTRAAAGWNEVNGLKVARFGDNMRYVAVTEGDKTEAEAVFGVAVNTWAVNELADAIERASDAEVARTMAEYDEQFEVVPELRADGARRGALRDAARIEVGLRAVLEAGDFHAFTDTFEDLGSLPQLPGIAVQRLNLDGYGFGAEGDWKTAILVRVAKVMGAGLPGGASLMEDYTYDLTPGDETILGAHMLEVCPSLTSRRARLEIHPLDIGGKSDPVRAVFTADPGPAVVVALSDMRDRFRLTANVVDIVEPEHSLPKLPVGRAFWKPRPNFVTSAKSWLASGAAHHTVMSSQVPVEVFADFARMAGTELAVIDEHTSPQAFQDALNWNSGYYRLHRGV

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Crispr_ID: NZ_LT576038_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT576038_2

2314230-2314341

Orphan

Consensus_repeat	Method
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT576038_2

>merge|NZ_LT576038|2|2314230-2314341|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCACCTGGCCAGAAACCTCTACCCCGAGCCCCTTGAGTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

>NZ_LT576038|2|2|2314230-2314341|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CTGGCCAGAAACCTCTACCCCGAGCCCCTTGA
GTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT576038.1\|WP_013160069.1\|2322737_2323859_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LT576038.1\|WP_044635884.1\|2299827_2300514_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_LT576038.1\|WP_036942942.1\|2314491_2314929_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT576038.1\|WP_036943004.1\|2316323_2317748_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_LT576038.1\|WP_013160081.1\|2308298_2308982_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181298
NZ_LT576038.1\|WP_013160072.1\|2320312_2321059_+\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_LT576038.1\|WP_155487553.1\|2311454_2314043_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_LT576038.1\|WP_097807414.1\|2324739_2326134_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_LT576038.1\|WP_055345946.1\|2322028_2322676_+\|CueP-family-metal-binding-protein	unknown	unknown	unknown
NZ_LT576038.1\|WP_048770097.1\|2301806_2304260_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_LT576038.1\|WP_055345951.1\|2324023_2324701_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT576038.1\|WP_155269328.1\|2304582_2305419_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_LT576038.1\|WP_048770099.1\|2300868_2301807_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_LT576038.1\|WP_055345944.1\|2309114_2310470_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_LT576038.1\|WP_013160083.1\|2306665_2307484_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_LT576038.1\|WP_013160075.1\|2315178_2316150_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_LT576038.1\|WP_055345737.1\|2305529_2306579_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|225333
NZ_LT576038.1\|WP_013160071.1\|2321226_2321724_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_LT576038.1\|WP_036943006.1\|2318402_2319929_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_LT576038.1\|WP_013160082.1\|2307582_2308302_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506

Protein	Function_ID	Function_description	E-value
NZ_LT576038.1\|WP_013160069.1\|2322737_2323859_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.0088e-49
NZ_LT576038.1\|WP_044635884.1\|2299827_2300514_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.54509e-67
NZ_LT576038.1\|WP_036943004.1\|2316323_2317748_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LT576038.1\|WP_013160081.1\|2308298_2308982_-\|SDR-family-oxidoreductase	gnl\|CDD\|181298	PRK08219, PRK08219, SDR family oxidoreductase.	1.09359e-113
NZ_LT576038.1\|WP_013160072.1\|2320312_2321059_+\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.06066e-122
NZ_LT576038.1\|WP_155487553.1\|2311454_2314043_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	9.92111e-32
NZ_LT576038.1\|WP_097807414.1\|2324739_2326134_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	1.08833e-94
NZ_LT576038.1\|WP_048770097.1\|2301806_2304260_+\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	2.6351e-18
NZ_LT576038.1\|WP_055345951.1\|2324023_2324701_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.20623e-80
NZ_LT576038.1\|WP_155269328.1\|2304582_2305419_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.40142e-116
NZ_LT576038.1\|WP_048770099.1\|2300868_2301807_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.79199e-109
NZ_LT576038.1\|WP_055345944.1\|2309114_2310470_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	3.18818e-20
NZ_LT576038.1\|WP_013160083.1\|2306665_2307484_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	9.31165e-61
NZ_LT576038.1\|WP_013160075.1\|2315178_2316150_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	7.73578e-158
NZ_LT576038.1\|WP_055345737.1\|2305529_2306579_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|225333	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism].	2.30631e-33
NZ_LT576038.1\|WP_013160071.1\|2321226_2321724_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	1.19326e-95
NZ_LT576038.1\|WP_036943006.1\|2318402_2319929_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.94337e-38
NZ_LT576038.1\|WP_013160082.1\|2307582_2308302_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	2.44995e-102

>NZ_LT576038.1|WP_155487553.1|2311454_2314043_+|LCP-family-protein
MADDDVQRPRRVRRAADDAHSATPPASGTPGTPRRIWARPQPEDPPTTPPAAPEPPAAPSTPADPTPTGGSSRRGMGTNEPHVSKWGTRESTPEPTASATPRRSWSRRRAESTGDQPPVGSGHPTGEGTGPRHARRSAPIHKPVESDLSHPDAPRSTAAADATTPSPAPAEQAPTRPAPPAAATPRGRQHDAPTPRASAPDKHVASRRTPATTPPAAATPHSAAPHSPAPHDPTPPSPTTHAPTPGTPTAPRSERGANLTLGGEPLGEHTAFLHAPDYRHANAAARAAARERARRAAAGTEPAAHDGELFDVEQVGLREPPPPPPEPEPASLRSRFAAFTERSDDTGSHGFGWTMLRTTLGSLIPGAGLIGTRLTMIGTLLFMMTVVFGSGVILAAVVHPPALMATVMNSVGLTAIGTMLVAVTIIWMAIVAGTYLVTRPRRMKRWQRIAGAIVVFLMAALVGSVSSVGAAYAFESAIVVSDVFGNSKTRSQTRPLGDWANKDRVNILLLGGDSGADRDEDLGLRTDTVMLASINTHTGNTVFIQLPRNLENVPFPAGSDLAKVYPNGRVWDRSSGTEDNYMLNAVWNEVPLEHPELFRNTDQPGADATKLAVSGITGLTVDYYAMINIDGIQALVDAMGGVVVNINFPIAKGGHVDGYGDEECGVDGNLSVGPDQKLDGADAMWYARSRCNDPDYDYGRMRRQSCLVNAIIRQANPQTMLTRYEAIAAAGKNMMSTDIPESLLDDATNLALQVKDAQVSRVVFSQAIGTAPQVGDINPGNPDYNAIRNRISGAITASDNGTTPSAPASASSSPMATGSAGSASSVASAAGSGSTSASAAGAAATPSGTAENMSGACDYHPN
>NZ_LT576038.1|WP_055345944.1|2309114_2310470_+|VanZ-family-protein
MEVWQNNAFVTVLVGGVAFLVLFLPYVVWSFHRFGQLSFRRIIGWAAVCVYFTGLAVYTLVPFPEDPQAFCASTHVGYNLHPLEFITDIRTQTAGMGLRSALTSAVVLQVVFNVVLFVPLGVLLHRYFRRGAITSTLIGLIMSVCIETTQYTGFFGLLPCAYRVADVDDVITNTAGTLIGALIAPLLLFWMPASRTLTSTRLVARPVTSMRRWVGMVVDGFLFYLIAASSSIAVLVAGRLLSWWPVEAEPEWISPAGDVVALLMVFVIPSLTGRGGSLGQRVVWLTPRWPAAADSGDGSGGSVGADSSGGTVGGGWPDDAAPDGGQMGGGTYRGGSLDSGSASSGLLDSRTLANGPLWRRLARSLVVVGPLVATRVLQLFIGEPVSGALNALSTLVIVLAVVMVVPTRSHRSLSGWLTGADMVDSRSVTPTVAGPGAGDTGVGGSGAADPT
>NZ_LT576038.1|WP_013160081.1|2308298_2308982_-|SDR-family-oxidoreductase
MAERRAVLITGATRGIGRAIADELADDWHVLVGGRHPDQVRKVVQALPSAEPFIADLTDAGAMQAAVEQIGHLDAVVHSAGAVVMGPVSELSRQDWRDLYEINVVAVADLTAELLPKLREAHGQVVTINSGSGFHTGPGQTCYAATKHALVAFTDGLREEERGVVRVTSVHPGRVDTDMQVDIQRQLGAQYQPERYLQPADVARAVELALTMRPGANVDTVSVRPAL
>NZ_LT576038.1|WP_013160082.1|2307582_2308302_-|glycerophosphodiester-phosphodiesterase
MTAVWAHRGASAAAPENTLPAFQAAATLGADGVELDVQRTRDGQLVVCHDETIDRTSNGVGNLADYTLSQLKEFDFSAGHPEFTNVAIPTLAEVFDVLGPTGLMINIELKNSVVPYEGMEAQVLALVHAAGWDDKVFYSSFNHRSMRRLAERDYPVGLLYDSVLWRAAKYAAELGASALHPSGRAVRVNPGVVRAAHKRGLSVNVWTIDKPAQIQALLDLEVDAIITNVPDVALGVRDA
>NZ_LT576038.1|WP_013160083.1|2306665_2307484_+|shikimate-dehydrogenase
MTHHAAVIGSPIAHSLSPVLHRAAYQQLGLHDWEYDAIEVTPDTLGEFIASRDNSWAGLSVTAPLKEALIEFGRPDQQSSELQSANTLIFGHPNRLFNTDVTGLRDAMASYDVIMPGTAVIMGAGATARSAISTLVRLGCRVIRVVARDAGRAHASLDRVAALYGTDLQIVDWSGFDALGADSADVLISTAPVQYTPEEAAQLAAVSQVVFDIVYQNYPTNLSRAAIKAGRVSVDGVDLLVHQAIDQVRLMTGEEPLAEPLIEVCRAELAKR
>NZ_LT576038.1|WP_055345737.1|2305529_2306579_-|beta-propeller-fold-lactonase-family-protein
MSTQLCYVSGRRDGLITTVRFDDKAETAEVVSRLNLGPKPMPLELNRERRLLRVATGADPLRVSTLKLLPDGSCQVLSEVNCPLSATYLSFTPDDRMAFVVSYHASRLAWAPVWDNHLIDDSAWHVEQVGEQPHCVEPSPDGRHVYVVELGANRVQGFRVSDGELVADEQIGVQFEHGTGPRHLVFDASGEHGYLIEELGGHIVHLTRDPDSGRLTVAERVPYSDRADDLRPGVHVPSGSTPSLDDQTLRHWGAELALDPQRHWILASERRASTLNLQALNDDGSFGARLDHVPTEKQPRGMGLIGDHHVIAGAELGDTATIYRVDDQLEPVAEVEGLGGPVWFASIGS
>NZ_LT576038.1|WP_155269328.1|2304582_2305419_-|aldo/keto-reductase
MPTTPTPTVELSGGTRMPMLGMGTWPLKGEECRAAVASAIEQGYRLVDTAEAYGNEEAVGKAVREAGPDRAEIFVTTKFSKQWHSRKGVHEALEHSLERLGLDYVDLFLMHWPMPGEGSYVDAYRGMVELKEQGLAKAIGVSNFKVHHLDDLITEGMTPEVNQIQLDPSRPRLEVRDFLDNHDIVTEAWSPLGRGADGVLNAPAVLDAAKKHGITPAAAVLAWELNQGIVTIPKSANPEHQRTNLEAIGVELSAQEMKAIDALADPNAKIDDSDKTGN
>NZ_LT576038.1|WP_048770097.1|2301806_2304260_+|FtsX-like-permease-family-protein
MLRQPRQLISAGIAILLGVAFVAATFVFSASLNAGMTKLVAGMVGDAKVAVSPSDKVYTPVTPQQADTVSKVPGITRAKKIVQGSATLQVDGQDNRALISSQPDLSSETTLFEGTLAKGDGQVSISKSAADAYHLKLGDKVTLETFDNQTFDETVVGIINAGNDAVTQPLASWVFAPTEQAMAMASTNGYNLVLLYGNGDDTALRDAVQSAQGVSDAQLTVRTGQDEVKAAMKQMTGSTNSIQYVLLGFAAIALFVGIIVIANTFSILVAQRVRQLALLRCVGATRNQVFGMVFGEAALLGLVGSVAGILAGFGLAAALIPLASKGAQIPLAFSISPAAVIVPLVVGVLITLAASISPARKATRVAPLAAMRPELAVGKAKRLGIVRAIIGVLLVAGGAAMLAMGMVRAKPNSGMSGLVIAIGGGLLSFIGVLLVGRGLIPALARLIGTPLAKSSVSGDLAVGNTRRNPGRAAATANALLVGVTLITLLTVGASASQASLDRYLSATYPQDAVVSAVKSVDEQTLTRIKATDGVQDAALVPSTTADVSYGTTNTERKVDGVDNAAAHLTHFPQRYENLDDNTVRTSDTSLHDGETVTIKGTAGTTVQLTAKVSDDYAPTLIVSTTVLNKIDADAPDSAWVQYKAGANVNTVTTDLGKAIGNLGHSSIDSGAQARAQFGQMIDIVLAVAVGLLAVAVAIAVIGVANTLGLSVLERTQEIGLLRALGMTRRQVRAMISWEAVMIAVVAAALGLALGVTYGLIGAKTLLGSITSTPFVAGLPWVRLVIIGLIAVAAGWLASLIPASRANRISPSAALATE
>NZ_LT576038.1|WP_048770099.1|2300868_2301807_+|ABC-transporter-ATP-binding-protein
MTTMTQPTTAAVRTVHLTKIYGQGDTQVTALDDVSVEFIRGQFTAIMGPSGSGKSTLMHCAAGLDTPTSGQVFIGQVDATSLSDTNLTLLRRERVGFVFQAFNLLPTMTAEQNILLPLKLAHSKPDRQWLDTIVKVLGLQDRLSHRPAELSGGQQQRVAVARALITRPEVIFADEPTGALDSAASNELLDFLSRSVHELGQTIVMVTHDAHAAGFSDRVLRLADGRIVSDEPVNHPVAGQTPVPTTGFTAGAVAGATNYAPAPSTPPQMPTPQMPNPQMPPPQMPAPQAPAATPQRPDDANGTGLKRQAGDA
>NZ_LT576038.1|WP_044635884.1|2299827_2300514_+|response-regulator-transcription-factor
MPDEPIRLLLADDQEMVRVGFRMVLDSQPDMTVVAEAPNGRDAVDAVLRAAPGQAPDVALMDIRMPVLDGVAATSEIVAGSDTRVLILTTFDLDEYVYSALQAGASGFLLKDAGPTELLAAIRAVASGDSVVAPSATRRLLERFVPTLPTAQSGGDTKKRLEALTDREREVLTLVGQGLNNTEIAETLFLGGATVKTHIGHILAKLELRDRVHMVVFAYDAGLVHPRG
>NZ_LT576038.1|WP_036942942.1|2314491_2314929_-|hypothetical-protein
MSSYILRPRIPRRAFVLGSAATVVGLVLVVIGLVQNWAILAIIVLAALLAVGLLTLLMVAYSMVNHRIHIDLDAKGYRVHGPGMDRRGTWAKVTRVAVTPDGSRLMIASGPVKRTYISCPKGGDDPAMQALIKEISAHLPEHSRR
>NZ_LT576038.1|WP_013160075.1|2315178_2316150_+|NAD(P)H-quinone-oxidoreductase
MHAITVDEPGGVDVMSWAEVPIPDPGPGEVLVRTQAAGVNRGDVLQRQGHYPPPAGITDIMGMEALGVIEKLGDGVEGHQVGEQVLALVSGGAYAEFFVVPAGQLLKLPAGIDPLAAAGLVEVAATVVSNFDRVHLSAGETVLIHGGAGGIGTLAIQYAKALGAHVIVTAGSAKKLAYCRKLGADEGFDYHDDWEPQVMMATQDRGVDVILDIVGAKYLEANVRCLADDGRLVIIGMQKGTKGTLNIAVLLNKRGTVTATSLRFRSLASKAAICRRVEEAIWPLLSSGAIKPGNQTQVPMAHASKAHELLESGDNTGKIILVV
>NZ_LT576038.1|WP_036943004.1|2316323_2317748_+|argininosuccinate-synthase
MSKVLTSLPVGQRVGIAFSGGLDTSCAVAWMREKGAIPCTYTADIGQYDEPDIASVPGRAGQYGAELSRLVDCRESLVEEGLSALACGAFHVQSAGRAYFNTTPIGRAVTGTLLVRAMNDDNVSIWGDGSTYKGNDIERFYRYGLMANPSLRIYKPWLDEDFVSELGGRDEMSVWLQKRNLPYRDSKEKAYSTDANIWGATHEAKTLEHLDVSLETVEPIMGVKFWDPSVTIDTEDVTIGFEQGRPVTINGKKFDSAVDLVLEANKVGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLFIAYERLVNAIHNEDTIINYRNEGMRLGRLLYEGRWLDPQSLMIRESIQRWVASVVTGEVTLRLRRGEDYTIVNTDGPAFSYHPERLSMERVQDAAFGPLDRIGQLTMRNLDISDSRSRLEQYASQGQLTGGEAAKLVGALEPGKASEIADHPEHAGTSHATPLDNAAMETGAD
>NZ_LT576038.1|WP_036943006.1|2318402_2319929_-|LCP-family-protein
MALVLFVVVAAAGIYIWRANAGIKRSGAIADKTSQSSDLDLLVMGLDSRVDVNGNALPSDIYDALHSGDASDGGLNSNVLMYVHVPADGSQASVFAIPRDDYVDFPGCPDGVCKGKIKEAYGYAADAKTQELDKQGKTGQDAYQQARDAGRAAEVRTVEQFLGVEIDHFIEVTMVAFFQIAQVVQPITVCVNEKTVDTYSGADFKAGEQDINAEQAMAFVRQRRDTDNPDLAFTDLDRSRRQQAFIASLLVKLKKTNLLTNPGQLDKLVQVAQQNTVLDKNLKISQLTSLATSLEGSKLNFYTLPVESFGTADDGAAINVVDKAKIQGIVRSILHPGQSASPSASASASGSASYSPTYGMGATVSVMNESGVTGAAASLVGQLTGFGFTAGQATNGADILQESSVSYGSAVAGQAKQLAQQLGGLSANADSTLGANAVVVHMGTGFTGWPSASPSAASSAASTGGSSVSPSASSTAIPSAVDANSGGQSGPEPSQLTQISGGGIPCVK
>NZ_LT576038.1|WP_013160072.1|2320312_2321059_+|NAD-dependent-protein-deacylase
MSADQLSRILAPADHVVFFGGAGVSTESGIPDFRSATGLYKTQSGGEFPPEYMLSHSCWADHPEDFYAFYRKNMLHPEAKPNAAHYALARLEKAGRLTAVVTQNIDGLHQMAGSQKVFELHGSVLRNHCVDCHRSYPVEAIEQSTGIPRCTVCNGIIKPDVVLYEEGLDPDVMDGATRAIMAADVLIVGGTSLNVYPAAGLLEYYRGDKLVLINKSATPADNRAQLVIHDSIGKVLGQAVDEVLGDKA
>NZ_LT576038.1|WP_013160071.1|2321226_2321724_-|thiol-peroxidase
MSTTAFQGTPVHTVGELPAVGSQAPDFELVGKDLSTITLKSLRGRRVVLNIFPSLDTGVCATSVRTFNKLAAGLDNTTVLAVSKDLPFAAERFCVAEGIENVVPASAFRKHSFSNYGVLMTDGPLAGLLARSVVVIDENGTVVYNQLVPEIGNEPDYDDAVAALK
>NZ_LT576038.1|WP_055345946.1|2322028_2322676_+|CueP-family-metal-binding-protein
MSRRFATTLAASALSLVVLAGCSTATAGPSSGTPSGTVTAGAASNTSSTAANGSVDVAKAGVEELKGADARTLVDKLEATPLSQRRTDLRASVRADELQLSDTSGNKASVKMPAAQFYLSFAPYVNKTHDCTYHSLTTCKAELGNKQMHVTVTDAAGATVIDQDLTAADNGFIGVWLPRNITGTLTVSYDGKSASQQISTAKADDPTCLTTLHLA
>NZ_LT576038.1|WP_013160069.1|2322737_2323859_-|HAMP-domain-containing-histidine-kinase
MLTRRSIARRFLTGAAVVVGVAVVTIFVVDALVSPAIFHAHLMQADLSNPETVLRHVEEGMRSSNMIALAVAILIAVLAALLVSLYLATRVSASLAPLAAAARQVAAGDYTARVDAGPLGAEFDELTEAVNAMSQRLASVEQSRTRLFSDLAHEMRTPIAVVQAQLEGIEDGVVGVEDSIPVLRAQAERLTRLSSDIGLLSQAQEHALRYEFAPGEVASVVRGCVDDMALRYREAGVQLTLDVATHARAQLDTARFAQVITNLLANALNATVSAGRGRTGDRGGHVHVGVRRHGNEVAVQVRDDGVGISPEELPHVFDRFARVGPARDRSSGGFGIGLTVARAIMSAHHGRISADSPGPGRGATFTVTVPVLH
>NZ_LT576038.1|WP_055345951.1|2324023_2324701_-|response-regulator-transcription-factor
MIVEDEHSLATVMAGYFTRNGYRAEVVGDGLEAVAAARRLDPSVVILDLGLPSLDGVEVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRSAITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFELLVHLARNPRRAISRDELIEAVWGVGWSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRMGQGR
>NZ_LT576038.1|WP_097807414.1|2324739_2326134_-|MBL-fold-metallo-hydrolase
MSKPVATLTFLGAARTVTGSKFLLDLNGRRLMVDAGMFQGAREWRRRNWDDFPVDPATITDLLITHAHMDHSGYIPALVKHGFHGRIHCTPQTRELTAIVLRDSANLQVNEARDAARGGYSKHNPPLPLYDEADVERSLPLFHDVAFDRDLDLGGGVHARFTRAGHILGSASIRVWLADDPQISVLFSGDLGRDQHPVLRRREEPEGATSVLIESTYGNREHPTGDEEDHEALAGLIRRTIARGGSVLIPAFAVDRTEILIKVLGEMQHAGRIPPVPIFINSPMGSAALDVYQGTGAHAELRADIDISALLNLPTLRDVRTKEESVALNRPAQPCIIISASGMATGGRVVHHLRHMLPDPRNAVVFTGYQALGTRGRSLVEGAKQIKMYGRYVPVKAEVLLDTAFSVHADAPELLEWLAALSPAPQVVYCVHGEPKSAEHLADTISEELGLMAVVPRYGEVVRL

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Crispr_ID: NZ_LT576038_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT576038_3

2387903-2388010

Orphan

Consensus_repeat	Method
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT576038_3

>merge|NZ_LT576038|3|2387903-2388010|CRISPRCasFinder
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGCTCAAGGAGCGGCGTGGAGCCCGCCTTCGCTCCAGACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC

>NZ_LT576038|3|3|2387903-2388010|CRISPRCasFinder
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	TCAAGGAGCGGCGTGGAGCCCGCCTTCGCTCCAG
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT576038.1\|WP_097807431.1\|2391250_2393149_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224926
NZ_LT576038.1\|WP_044636463.1\|2382091_2383648_-\|xylulose-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_LT576038.1\|WP_097807429.1\|2380119_2380896_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_LT576038.1\|WP_157763600.1\|2383900_2385106_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|188457
NZ_LT576038.1\|WP_055346282.1\|2398814_2399780_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_LT576038.1\|WP_097807436.1\|2403405_2404440_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_LT576038.1\|WP_097807434.1\|2401173_2402184_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|275173
NZ_LT576038.1\|WP_055346283.1\|2400148_2401102_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|275172
NZ_LT576038.1\|WP_080774563.1\|2388721_2389516_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_LT576038.1\|WP_097807427.1\|2377263_2378535_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NZ_LT576038.1\|WP_157761610.1\|2395426_2395738_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_LT576038.1\|WP_044658123.1\|2380986_2382039_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223318
NZ_LT576038.1\|WP_157763599.1\|2378534_2379605_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_LT576038.1\|WP_097807435.1\|2402403_2403270_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_LT576038.1\|WP_044636464.1\|2385830_2386832_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_LT576038.1\|WP_055344689.1\|2375118_2375811_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT576038.1\|WP_080774562.1\|2386828_2387836_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
NZ_LT576038.1\|WP_097807426.1\|2375807_2377235_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LT576038.1\|WP_157763601.1\|2395747_2397100_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LT576038.1\|WP_097807437.1\|2404756_2405017_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT576038.1\|WP_097807431.1\|2391250_2393149_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224926	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_LT576038.1\|WP_044636463.1\|2382091_2383648_-\|xylulose-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	4.1608e-163
NZ_LT576038.1\|WP_097807429.1\|2380119_2380896_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	1.12061e-65
NZ_LT576038.1\|WP_157763600.1\|2383900_2385106_-\|radical-SAM-protein	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	9.84557e-131
NZ_LT576038.1\|WP_055346282.1\|2398814_2399780_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	3.89093e-05
NZ_LT576038.1\|WP_097807436.1\|2403405_2404440_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.26128e-75
NZ_LT576038.1\|WP_097807434.1\|2401173_2402184_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	3.2219e-52
NZ_LT576038.1\|WP_055346283.1\|2400148_2401102_+\|TIM-barrel-protein	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	4.17172e-44
NZ_LT576038.1\|WP_080774563.1\|2388721_2389516_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.42949e-107
NZ_LT576038.1\|WP_097807427.1\|2377263_2378535_-\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.22662e-65
NZ_LT576038.1\|WP_157761610.1\|2395426_2395738_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.000121236
NZ_LT576038.1\|WP_044658123.1\|2380986_2382039_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	2.45604e-60
NZ_LT576038.1\|WP_157763599.1\|2378534_2379605_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	1.19181e-15
NZ_LT576038.1\|WP_097807435.1\|2402403_2403270_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	7.81718e-39
NZ_LT576038.1\|WP_044636464.1\|2385830_2386832_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	4.89977e-35
NZ_LT576038.1\|WP_055344689.1\|2375118_2375811_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.21705e-90
NZ_LT576038.1\|WP_080774562.1\|2386828_2387836_+\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	7.85912e-48
NZ_LT576038.1\|WP_097807426.1\|2375807_2377235_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.26131e-58
NZ_LT576038.1\|WP_157763601.1\|2395747_2397100_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.4512e-52

>NZ_LT576038.1|WP_080774562.1|2386828_2387836_+|ABC-transporter-permease
MSSQVTTRALTPVEGELLGELADPGSPGASRAAASRPGATTEGDASAGTTASSDVPPRRTGIRALLDGGPRGFIRGLTRPGALGRHRALILGTAGIVALGAVWQTAVGLRILNPEIVPGVGATLAELVRLVGLPGFYVTLGQTLLSAGVGLVLALVIAVPVGLALASSAWLRRLLNATIDALRPIPPIVLLPLAILAIGGGLGFKVTLVLQGALWPLLLQTSYGLRAVDPLQTDVAASFRIDPLRRLFLFRIPAAAPVIFSGLRLAASTAFGVSVMTELVGGERGLGSILAIAQSGNNVPRVYAITIITGLVGLAIAFFFGRLERLLLPWQEATR
>NZ_LT576038.1|WP_044636464.1|2385830_2386832_+|ABC-transporter-substrate-binding-protein
MHKKRLFHIPLALLSALLLVLTSACSASTDDGSGTRANAGASASTQLQTVKIGAVPTLILGFLQVGEQQGYFAKQGLKLDITPADSGPNIISSLAAGQYDLAYTAYAPALVAVAGGQDLRLVDHLDNVSAAGHNAGLLVKSDSPITRWKDLEGKKIGANAPRSQLVLWIQAAIKADGGDPGTLQIVPLPLNQIADNVAQGKLDAGSVTEPYLTQAHNSPALRDLGDPATAGFSQGTPSGGVFTSEKTLQAKSDVITKYRAAFAQTIDYANGHVDEVRAQGAKLVGLSDAAAKTITIDPISTDVKAQDFGPFVKALTELGWTKTDVDIERFLSR
>NZ_LT576038.1|WP_157763600.1|2383900_2385106_-|radical-SAM-protein
MAKPAGPTCNMECTYCFYLDKQALFPRSSLRMTPEVVRAVLQDAIDASPDTAIQFCWQGGEPTLRGLDFYREAFAVARRIVPPGRHFAWSMQTNGVLIDERWAEFLARHDVLVGLSIDGPRDVHDRWRVDRGGRGTWAKVMRAARLLHEHGVRFNTFTTVHPANQHRGAEVYRFLRDEVGSDFHQYIPIVVPDPARPGHVVRGLSVDPGAWGEFQVDVFSQWLHRDVGQVFVMNVEWALAAWCGDEPASCMFREHCGDAVVVEHDGSVYSCDHFVDPARREPTRWRALRTGRRSTTCAAATGTSSPRSMRRCATWRRACCPDATRPGWCPGPGSTGSWCRRAPERVDVPRRRPARPPHVCTSGFHILCAPGCRSPADDAQWPRNEAFARPSRGVVHRLHRL
>NZ_LT576038.1|WP_044636463.1|2382091_2383648_-|xylulose-kinase
MSERQRTQQGPLVVAIDSSTTSTKAIVVDTNGTVWATARRPIPLLTPAMDHYEHDPALWWRTSHETIGEVLGGLSQADRDRVAAIGITHQRESFAPFSADGTPLANGILWLDGRAAEQIERHGSAHVHELSGKPAGVTPAIYKMAWVTQHHPEWFARADKVTDVLGAIVFNLTGRWASSTAAADSLGLFDIQRRDWSDELLQIAGVRRDQMPELVAPASPIADIRPELAAEWGLARPIPVIAGLGDGQAAGIGAAAVDPGVGYLNMGTAVNAGVESGSYIYNPAFRTHVSGIPGNYVLEVLQSSGSYLAGWVRDTFGDPDHPGDPDVERDNAAAAAIAPGADGLVTLPYWNAVQSPYWDALARGAVVGWRGTHTRAHLYRSVLESICFEMRRNLDELADGTGTPITQLRIMGGGARSGVWRQIMADVTGVPLTVCLEEEISALGAAVLAMAAINAHAEPLADGSPDVASSAKAMASFGETVHPDMELHERYRRIAAVHARLYPALRETFQELAALSQD
>NZ_LT576038.1|WP_044658123.1|2380986_2382039_-|glycerol-3-phosphate-dehydrogenase
MPTITVLGAGAMGSALCRPLADAGWDVRLWGTWLDDHLLDAVEAGKPHPRTNVPLAPGVATFRSAQLEQALDGTQVVVMSVASVGVPRVAELALPGIAKADALWMTSKGFSEADDGRIGLLPEAIRSIAAAKGVALPPLVAIAGPVKANECAQALPTATIFGCRDREVSRSYAAQAATANYAIAHTDDETGVEVCAPMKNVYAIALGVADGLEEKTGVPHHNLKAAAFAQAIAEMSLLGAQLGADPATAYGLPGVGDLEVTGLSGRNKVYGVRLGRGEQPQEALAEMDRLEQTVEGVPATALAVRFVEQIGGGLAERMPLLAAVNRLLNDAGADPMTEVARAVLPVKPTL
>NZ_LT576038.1|WP_097807429.1|2380119_2380896_-|DeoR/GlpR-transcriptional-regulator
MEQQPATSRDVRIHDVLQVVTREGTIAVKELADELGVSPMTVYRDVAALETSGLIQRSHGRVTAAPFSMAEASSLMRMGTELDAKQRIADAALPLLAPGSTIAMDDSTTCRHLFPGLGELAPLTVVTNARFIADAVRDSAELELITLGGSYLRWADAYAGPMTEAMIDQVSPEVCIMSTTAVTGGVCSHPDEAMAAVKGRLMRAARQRILLVDRTKFSRNALHRFLPLSEVDVVITEKSLDPAHLATLHDQVERVITV
>NZ_LT576038.1|WP_157763599.1|2378534_2379605_-|DNA-3-methyladenine-glycosylase-2-family-protein
MTSSPRATSRSATSPPAPDAEGQPVAGTRSGAAGSPAQRTVLGAAGRLDMALGRLAKGPADPTHRRVGAQHWWRATRTPDGPALLELFDHHADVVTRAWGEGADWALDQVPRLLGEQDDPSGFAALAADCDLLRRAHHDHPQWRIGATDNLTEALAPAVIEQKVTGPEAFGGLRSLLAKYATPAPGPAATPDGPAHGMVVPPTAEQWAHIPSFEFTRAGVDGRRAAALVRAMRRAPSLERALGRATDGAERSRLLQTQPGIGPWTAAKVLQWAYGDPDAWSVGDYHAPALISLALTGQKGDDAFADEALAPYAGHRYRVELLVTPLVAHAARRGARRTLPSHVPGVGVNRRRSWRR
>NZ_LT576038.1|WP_097807427.1|2377263_2378535_-|MFS-transporter
MASGMESPETTHETGHKASDKPAHKAGRVPTRLRLARLGVLVIFFVNGATFASLVPRYPEIIERLHVSNTLWGLALGIGPIGGIALGWLAAPLMRRYRSRNVAALAQIASSGALVILALAGSIEWVFVAMFAMSAFDAVTDTSMNYHGLRVQRLYRRSIFNSFHGWWCIGAVVGGFLGSAAAGAAMAVPTQTYVTVGVLLCCVVASWAMMLPGEDREQVAGTEVATGRAWLRPRTLAVLVGLGLLGALAGGIELGGSAWSPLYMTDQFAATPFVAGLGFVALMVFETLGRLTGDVIVDRLGLVRTVIWGAVACLAGMALALAAPTPVTALIGFGASGWGIATMIPNAMNAADGLPGVPAGVGLTITTWVMRVGFVLFPIVIGALGDAVSLRLALLVIPLSAVLIMALSPLLRPRPAPQATATG
>NZ_LT576038.1|WP_097807426.1|2375807_2377235_+|HAMP-domain-containing-histidine-kinase
MIRPLRRAVLGRNGEPRTLQQRFAAMTAAVVALAVAVVGMIAYVSTSRSLYGQVDDELVSVAGYMVTPIASDVTGMGGLNSSSLQAANVNIVLVKSDRSIVRVQGEKVSIQPDAPEVAVARMKFGKSTRTVSLGPDGQRYRLVAVPMEAKDNSSYALVLARPLEPLVDTLDQLRAILLWLGIGFTIIAAAVGYTIGRRVMQPLRQLSDAVAHVTETDELVPIGSTRADELGDLSRAFDTMMHSLASSRNRQKYLIADASHELRTPLTSMRTNVELLVADEKSGMLPEGARAEILGDVAAQLGEFTSLVGDLVQLSRDDVVLPSPEPLDFAEVVESAITRAKRRGSSLNFDVSLEPFYVVGEPDTLERAVTNLLDNAVKFSPRGGTVHVHLAGDTLTVSDEGPGIAQDDLPHIFDRFYRSNKARNTPGTGLGLSIVAHTVKAHGGWVHADNAPGGGAMFTVRLPAAPPEVVAQIDH
>NZ_LT576038.1|WP_055344689.1|2375118_2375811_+|response-regulator-transcription-factor
MAMQILVVDDDQAVRDSLARSLHYSGYEVETAEDGLEALAKLSNLHPDAVVMDVMMPRLDGLETTKMLRANGNDVPILVLTARDAVGDRVDGLDAGADDYMVKPFSLEELLARLRALTRRSRPESQQANEVLSFADMTLDPQTREVTRGGRRISLTRTEFALLQTFMEHPGKVLDRSWLLNEVWGFDFPATANSLEVYIGYLRRKTEQEGEPRLIHTVRGVGYVLRETAP
>NZ_LT576038.1|WP_080774563.1|2388721_2389516_+|ABC-transporter-ATP-binding-protein
MTEPIVKVQGIKKTYISDKGDHIALAGVDFDVARGEVVSIVGPSGAGKTTVLRIIAGLLSPSAGRVEVAGQPVSGQPPEQVGLVFQDYGRSLLPWLSITGDVALPLRSKGVDRAGARTLALGALDAVGLAGRGKAHPRELSGGMQQRVAIARALAYEPQLLLMDEPFASVDAQTRMDLEDLVLPLRDQFGITVVIVTHDVDEAVYLSDRVIVLTPPPSVVSRIVEVDLPKPRDQQRTKDDVRFARLRGEVLDLVRGREPEARAA
>NZ_LT576038.1|WP_097807431.1|2391250_2393149_+|MBL-fold-metallo-hydrolase
MTEIDIHTHTALSDAEAVVRHADGGLDDATKPATGFTRQLNAGVAERLGIDLDDASNSEYEVARAHLVRPADTLEILDDQGRQVWNVRKFDFLKDPQVPATVNPSLWVHAKYDRLAGLFEVVPDTIYQVRGFDISNLTLVKSKTGWIVLDVLTTTETARAALKFAEEGLNADIANNIRAILISHSHADHFGGIEGIIASERIGRTEDGLVPIYAPAGFLEEAVSENVYAGTAMSRRSDYQFGTAAAARAHQGSLPGLSQITPKGTVNLPRPTHVIEHDQTIVLDGVEVFFQLTPGTEAPAEMNNYFPQFRALWLADNTLATLHNLYPIRGAQVRDAKAWVNYILDLVHRFGAQATVAFQAHEWPHENTAEQPNAVREYLLNTAAVYKYIHDQTLHLANQGYTADEIGRRIEVPDQLLKHWYIRPYYGSVEINAHAVYNRYLGYFNGNPINLFPLAEEQFARKFVEYGGSADQVLQRAQADFDAGDYQWAAYAANQVVFTDPDNQRARYLAADALEQLGYQSEPSIWRNAYLQGAEELRHGVDSSQQLIGNKGALLSHVSVESVLDYLAISLDGQKAASDDFELELTVEHPDTGQDAESYLLYLRGGALLYHPSRVRTARVPMPPCCGPSSVR
>NZ_LT576038.1|WP_157761610.1|2395426_2395738_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MPVTVRNITTREFRDNLSEQLSRAAYSGDRIQILRNGQPIAMVVSMDDAEELRELDYYKDAADYRRAVAERNGDPLAMPTRNDVIVADGASARNDLARRLGFE
>NZ_LT576038.1|WP_157763601.1|2395747_2397100_-|MFS-transporter
MELNWTTRLVVAAVLLAAAFTGLLNQTLMVTAMPMMMHDFGISLSLAQWLTTGNVLVVGVVTPVSAMLYERFSTRALFLWSTGLFIAASVLGFVADNFWPVLAARLLQAVASGIIMSFAQIALLRITSPRRMGTVLGLYMMVVSAGPAIGPVMSGVMLEYLSWHALFGAGVLMMAVVFAAAVFTLPNIKAARKIAIDWPSFVLSFVGMGLFLAGISTVQEAPLVGVSMMVAGLLFVAWFARRQWSSAQPLLNLRLLKGATFRRMTVGVMLAFGVFLGTETIIPVLLESHAGRSGFATALVMLPGAVSNVIASPLTGRVFDARGLRTIWAWGSGITVVSAVALLAVSPASAPWAIAGAYLLRVVGTSVMSALPTARALKGLTGEDISHASALLNSLRQVAGALSNTVLVWAVAVVPDFTDGFRLAMAITAAATVVMVVVFARQARLDRAGA
>NZ_LT576038.1|WP_055346282.1|2398814_2399780_-|sulfite-exporter-TauE/SafE-family-protein
MDMELAAVIAVAVIVGIDKSLLPGAGTLAIGILANVIPARQASGLSLALIIVADWCAIWAYRKDVDWGVLRRLLPNVVVGIGVGAVFLALADDTATGRTIGVILLVFIIWNLLAMARKRRRAALGGGLAGYGVSGAATAGSVPAEPPAVSSPGDRGAAASVGEDGELAGDGGAAGGGESQPAGFVSARSGETSPAGWWARTRARFSWRGFGFGGLAGFTTMVANAGGPVTTMYFLAEGLSVTAFLGTTAWFFLVVNLIKLPISLSLGMLQTSSLPLVAAMVPVILATVLFGRWLAHRINPSFFRTVVVALTFVAAIALVIS
>NZ_LT576038.1|WP_055346283.1|2400148_2401102_+|TIM-barrel-protein
MSQTTTPATQKARNTNDPKYSKLAIGVCPDQWGVWFPDDPKQMAPRQAMQEMAEAGFEILETGPYGYFPTDPKELKSWTDEFGLKVVAGTGWGILHKAEAWAETERHFRQIAETHAAVGAEYIVHLPPLYRDDKTWEFTDDRVLSPEAWHLYVDNANKLGQIMLDDYGLKMVLHPHGDSHIETPDEIARIFDATDPRYVNLCLDSGHVVYGGGDPVELVHKYPERITYVHIKAFDPKITKEAHDKDWPFGEAVTKGASVRPPAGLPEMHAFIDALAELDKDIYCICEQDCYPCPPDFPKPNAIKMRDYLAECGLGLK
>NZ_LT576038.1|WP_097807434.1|2401173_2402184_+|Gfo/Idh/MocA-family-oxidoreductase
MTVRIGLIGAGGMGRAHGERIQNELAGGEVVAVADVNPDAAGYADSIGARYFPTGPELIADPGVDAVIIATFGKVHTPDVIAAIRAGKPVLCEKPLATTAQDCLDILAAEQEAGRKLVTVGFMRRFDKGYNEMRAQLTEGQHGYATMVHCRHRNPSVPATLYTTRNMIDDTAIHEIDICRFLLDEEITTVRVDTPRRSSNAPQGLQDPLVLVANTASGVRIDDEINVNIKFGYAIECELVMESGTVRLADQDHTILRDIEGDRHAICRSHIDRFHDAFNAEVQQWIRAVERGEHAGSTSWDGYAATCVVDAAIESLEHQGREVAVQMIDQPAFYAG
>NZ_LT576038.1|WP_097807435.1|2402403_2403270_+|sugar-phosphate-isomerase/epimerase
MVDIALDPNMYYASMSTAQTLFKAAELGFDYVELSPNTEFHFWHRYPKADDDFVAGLNKAQKDSGVTVRTLNPVFNWSSTDEQERAAQVRNWRRLLELADQINVREIVSEFSGNPNTPVRCEEQWYKSIFELAPDFEKYGITLSMEAHPYDFVERHDDAYSIVRGTNLDWIGYEFCCPHTFHLDDGVGDVERMITSCAPKLREVHVADTLNHRANDGNRYIVNPPGVDARVHQHSEIGKGEVPFDKVFETLRAVGFDGVLSLCVFGFHEHADEINRRMLERVRSEFGA
>NZ_LT576038.1|WP_097807436.1|2403405_2404440_+|LacI-family-DNA-binding-transcriptional-regulator
MAGGSRPTQADVARLAGVSRQTVSLVVLDDPRVSPRSRAAVTSAMAQLNYRPNVAARALVSHHTGFLGIVFSDLANPFHAELAEALRAAADRLGFVPFISPVGQSADEEKVAINRFTEMAVDGLILVSPLSDNTTLEAVGAQVPTVIVTRNSGPANVDLVHADDRASAAQVTQHLLAAGYDPVVFLGYERRIEGDSSLARIDGYRAAMRRAARAEQVQIVTQGRVPQIVGGLAASLTHGFGLVCHNDLIALEAWAALAELGLEPGPDVGVAGFDDTGMARFPGVGLTSVNNGTTGFADTAVEMISQRLAGRTARREVVLPTHLIVRRSTLRDQPDRPPRPAQQR
>NZ_LT576038.1|WP_097807437.1|2404756_2405017_+|hypothetical-protein
MAEQDARAEHTIAEHQHGPGCGHATVQHGDHVDYIHGDHRHALHGDHYDEHGSDPDTPAEHTIAEHQHGPGCGHETLEHGDHYDEH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT576038_2	2.1\|2314270\|32\|NZ_LT576038\|CRISPRCasFinder	2314270-2314301	32	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	93743-93774	8	0.75
NZ_LT576038_2	2.1\|2314270\|32\|NZ_LT576038\|CRISPRCasFinder	2314270-2314301	32	CP031732	Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence	144379-144410	8	0.75
NZ_LT576038_2	2.1\|2314270\|32\|NZ_LT576038\|CRISPRCasFinder	2314270-2314301	32	NZ_AP015031	Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence	216038-216069	8	0.75
NZ_LT576038_3	3.1\|2387940\|34\|NZ_LT576038\|CRISPRCasFinder	2387940-2387973	34	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	104107-104140	10	0.706
NZ_LT576038_3	3.1\|2387940\|34\|NZ_LT576038\|CRISPRCasFinder	2387940-2387973	34	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	50213-50246	10	0.706

1. spacer 2.1|2314270|32|NZ_LT576038|CRISPRCasFinder matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

2. spacer 2.1|2314270|32|NZ_LT576038|CRISPRCasFinder matches to CP031732 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

3. spacer 2.1|2314270|32|NZ_LT576038|CRISPRCasFinder matches to NZ_AP015031 (Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

4. spacer 3.1|2387940|34|NZ_LT576038|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

5. spacer 3.1|2387940|34|NZ_LT576038|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

310143 : 367315

Mycobacterium_phage(27.27%)

transposase,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013161911.1\|310143_310617_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_051733961.1\|310951_312175_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	7.7e-53	38.0
WP_013161909.1\|312479_313229_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_013161908.1\|313827_314847_+	P-loop NTPase	NA	NA	NA	NA
WP_013161907.1\|314833_315985_+	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
WP_013161906.1\|315981_316779_+	type II secretion system F family protein	NA	NA	NA	NA
WP_013161905.1\|316775_317519_+	type II secretion system F family protein	NA	NA	NA	NA
WP_036940518.1\|317651_318257_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_080516207.1\|318439_318727_+	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_013161902.1\|318857_319316_+	hypothetical protein	NA	NA	NA	NA
WP_051733962.1\|319477_319810_+	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA
WP_036940523.1\|319949_320216_-	hypothetical protein	NA	NA	NA	NA
WP_052809186.1\|320702_321194_+	molecular chaperone TorD family protein	NA	NA	NA	NA
WP_013161898.1\|321409_322621_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_097807466.1\|322736_325340_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	7.4e-170	40.5
WP_013161896.1\|325353_325998_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	2.6e-60	54.6
WP_013161895.1\|325997_327002_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_097807207.1\|326998_329461_-	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.4e-05	26.0
WP_060759474.1\|329710_331228_+	methyltransferase	NA	NA	NA	NA
WP_055343980.1\|331635_334422_+	type I DNA topoisomerase	A0A0G2Y4W4	Acanthamoeba_polyphaga_mimivirus	2.4e-94	32.4
WP_044658037.1\|334465_335911_+	hypothetical protein	NA	NA	NA	NA
WP_013161890.1\|335907_336546_+	dTMP kinase	M1PSC7	Streptococcus_phage	4.5e-36	40.3
WP_097807467.1\|336872_338186_+	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	5.4e-12	32.4
WP_048733641.1\|338333_340013_+	hypothetical protein	NA	NA	NA	NA
WP_013161887.1\|340142_341192_+	PSP1 domain-containing protein	NA	NA	NA	NA
WP_013161885.1\|341499_342342_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-28	38.6
WP_097807208.1\|342341_343856_-	ABC transporter permease	NA	NA	NA	NA
WP_013161883.1\|344120_345572_+	amino acid permease	NA	NA	NA	NA
WP_157761943.1\|345747_347103_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_157763608.1\|347822_349271_-\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	3.9e-120	54.2
WP_075891751.1\|349296_350595_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_097807211.1\|351101_352436_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	2.5e-174	69.1
WP_097807212.1\|352380_354249_-	hypothetical protein	NA	NA	NA	NA
WP_157763566.1\|354253_354700_-	hypothetical protein	NA	NA	NA	NA
WP_157763567.1\|355499_356786_+	hypothetical protein	NA	NA	NA	NA
WP_097807216.1\|356778_358803_+	hypothetical protein	NA	NA	NA	NA
WP_097807217.1\|358789_362422_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_172952059.1\|362584_363127_+	hypothetical protein	NA	NA	NA	NA
WP_157763569.1\|363232_364168_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_157763608.1\|364542_365991_-\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	3.9e-120	54.2
WP_075891751.1\|366016_367315_-\|transposase	ISL3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1594124 : 1649637

Tupanvirus(18.18%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055346104.1\|1594124_1595417_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_055346153.1\|1595413_1595809_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	5.0e-30	49.6
WP_081012818.1\|1595968_1597474_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_112317735.1\|1597609_1598200_+	DoxX family protein	NA	NA	NA	NA
WP_013160742.1\|1598235_1599030_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_097784343.1\|1599293_1600088_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_097807333.1\|1600177_1602805_+\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	1.6e-159	36.3
WP_013160739.1\|1602911_1603661_-	HAD family hydrolase	NA	NA	NA	NA
WP_013160738.1\|1603745_1604867_-	6-phosphofructokinase	NA	NA	NA	NA
WP_044658236.1\|1604945_1606388_-	threonine synthase	NA	NA	NA	NA
WP_036939438.1\|1606506_1606821_+	hypothetical protein	NA	NA	NA	NA
WP_013160735.1\|1606932_1608210_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.4e-136	59.2
WP_162484287.1\|1608331_1608967_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A248SJ97	Salicola_phage	1.2e-28	38.7
WP_162467436.1\|1609044_1609656_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.8e-41	45.6
WP_060762516.1\|1609766_1610999_-	AI-2E family transporter	NA	NA	NA	NA
WP_013160731.1\|1611231_1612425_-	AI-2E family transporter	NA	NA	NA	NA
WP_013160730.1\|1612649_1614233_-	trigger factor	NA	NA	NA	NA
WP_060762060.1\|1614968_1615283_-	ligand-binding protein SH3	NA	NA	NA	NA
WP_013160728.1\|1615394_1615643_-	hypothetical protein	NA	NA	NA	NA
WP_048769613.1\|1615848_1617390_+	hypothetical protein	NA	NA	NA	NA
WP_044658233.1\|1617386_1619681_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	2.3e-103	36.9
WP_013160723.1\|1619757_1620552_-	hypothetical protein	NA	NA	NA	NA
WP_044636658.1\|1620779_1621781_+\|transposase	IS481-like element ISPfr17 family transposase	NA	NA	NA	NA
WP_013160722.1\|1621874_1622489_-	DSBA oxidoreductase	NA	NA	NA	NA
WP_097807334.1\|1622831_1625435_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	7.9e-47	30.8
WP_013160720.1\|1625632_1627090_+	NADP-dependent phosphogluconate dehydrogenase	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	2.4e-37	28.4
WP_013160719.1\|1627219_1628041_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_013160718.1\|1628187_1629069_-	thioesterase family protein	NA	NA	NA	NA
WP_055346053.1\|1629074_1630964_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	3.8e-43	24.4
WP_013160716.1\|1631140_1631599_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_097807335.1\|1631604_1634433_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_044658228.1\|1634553_1636590_-	M3 family metallopeptidase	NA	NA	NA	NA
WP_013160713.1\|1636646_1638017_+	DUF4921 family protein	NA	NA	NA	NA
WP_055346054.1\|1638003_1639524_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_013160711.1\|1639536_1640166_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_013160710.1\|1640165_1641161_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_013160709.1\|1641332_1643021_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	7.9e-48	28.8
WP_013160708.1\|1643216_1643717_-	single-stranded DNA-binding protein	A0A1J0MC80	Streptomyces_phage	6.6e-11	34.8
WP_060761374.1\|1643933_1644596_-	hypothetical protein	NA	NA	NA	NA
WP_036939462.1\|1644592_1646236_-	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_051733921.1\|1646232_1648065_-	ABC transporter	NA	NA	NA	NA
WP_057374792.1\|1648134_1649637_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

1664146 : 1718209

Mycobacterium_phage(22.22%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055346098.1\|1664146_1665454_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.5e-182	71.0
WP_097775733.1\|1666866_1668110_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.9e-21	33.1
WP_172952071.1\|1668862_1669909_+	glycosyltransferase	NA	NA	NA	NA
WP_097775889.1\|1669910_1670933_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_157761579.1\|1670929_1671988_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
WP_097775891.1\|1671984_1672875_+	glycosyltransferase	NA	NA	NA	NA
WP_097775892.1\|1672871_1674002_+	hypothetical protein	NA	NA	NA	NA
WP_172952072.1\|1674058_1675351_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA
WP_157761581.1\|1675722_1675968_-\|transposase	transposase	NA	NA	NA	NA
WP_157763588.1\|1676173_1676545_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_129931526.1\|1676580_1676898_-	hypothetical protein	NA	NA	NA	NA
WP_097775897.1\|1677007_1678315_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	5.0e-167	66.9
WP_165363495.1\|1678804_1679080_+	hypothetical protein	NA	NA	NA	NA
WP_028701846.1\|1680978_1681980_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_097807341.1\|1682107_1683257_+\|transposase	IS3-like element ISPfr10 family transposase	S5WIU1	Leptospira_phage	8.6e-38	37.5
WP_097775899.1\|1683419_1684544_+	LCP family protein	NA	NA	NA	NA
WP_081083616.1\|1685262_1685904_-	hypothetical protein	NA	NA	NA	NA
WP_013160701.1\|1687731_1688238_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A060QNR4	Streptococcus_phage	1.4e-16	42.6
WP_097807342.1\|1688312_1690646_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.9e-117	32.1
WP_081083624.1\|1690715_1691561_+	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_055345425.1\|1691673_1692987_+	Mur ligase family protein	NA	NA	NA	NA
WP_013160697.1\|1692980_1693754_+	hypothetical protein	NA	NA	NA	NA
WP_013160696.1\|1694015_1694465_-	co-chaperone GroES	NA	NA	NA	NA
WP_013160695.1\|1694491_1694791_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_044636068.1\|1694964_1695453_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_013160693.1\|1695745_1696438_+	L-ribulose-5-phosphate 4-epimerase	NA	NA	NA	NA
WP_013160692.1\|1696418_1697186_+	cobalt-precorrin-6A reductase	NA	NA	NA	NA
WP_013160691.1\|1697258_1697849_+	precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT	NA	NA	NA	NA
WP_013160689.1\|1697945_1698599_+	precorrin-8X methylmutase	NA	NA	NA	NA
WP_044636667.1\|1698748_1699888_+	cobalt-precorrin-5B (C(1))-methyltransferase	NA	NA	NA	NA
WP_044636066.1\|1699919_1701185_-	cobalamin biosynthesis protein	NA	NA	NA	NA
WP_097807343.1\|1701153_1703799_-	precorrin-3B C(17)-methyltransferase	NA	NA	NA	NA
WP_013160685.1\|1703795_1704755_-	precorrin-4 C(11)-methyltransferase	NA	NA	NA	NA
WP_013160684.1\|1704784_1705558_-	precorrin-2 C(20)-methyltransferase	NA	NA	NA	NA
WP_048768869.1\|1706392_1708309_+	methylmalonyl-CoA mutase small subunit	NA	NA	NA	NA
WP_044636063.1\|1708305_1710492_+	methylmalonyl-CoA mutase	NA	NA	NA	NA
WP_055346085.1\|1710484_1711498_+	methylmalonyl Co-A mutase-associated GTPase MeaB	NA	NA	NA	NA
WP_013160679.1\|1711700_1713152_-	DNA polymerase IV	NA	NA	NA	NA
WP_112317801.1\|1713155_1713758_-	dihydrofolate reductase	A0A1Y0SUI9	Pseudomonas_phage	4.1e-15	32.9
WP_097807344.1\|1713872_1714685_-	thymidylate synthase	A6M9A2	Geobacillus_virus	1.9e-95	59.6
WP_013160676.1\|1714686_1715493_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	X5LRP0	Ugandan_cassava_brown_streak_virus	3.6e-06	26.3
WP_013160675.1\|1715489_1716251_-	ribonuclease PH	NA	NA	NA	NA
WP_055344137.1\|1716404_1717223_-	glutamate racemase	NA	NA	NA	NA
WP_048735089.1\|1717310_1717919_-	DUF2017 domain-containing protein	NA	NA	NA	NA
WP_112317802.1\|1717915_1718209_-\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT576038

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection