CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT593929	Propionibacterium freudenreichii isolate PFRJS14 chromosome I	5 crisprs	csa3,cas3,WYL,DinG,DEDDh	0	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT593929_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT593929_1

1595184-1595290

Orphan

Consensus_repeat	Method
ACCTCAACGGTGGTGAGTGTCCGCCCCCCACATGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT593929_1

>merge|NZ_LT593929|1|1595184-1595290|CRISPRCasFinder
ACCTCAACGGTGGTGAGTGTCCGCCCCCCACATGCCGTTGAAGCAGGCCGACACTGCTGGGCAGGTCCGTGACCTCAACGGTGGTGAGTGTCCGCCCCCCACATGCC

>NZ_LT593929|1|1|1595184-1595290|CRISPRCasFinder
ACCTCAACGGTGGTGAGTGTCCGCCCCCCACATGCC	GTTGAAGCAGGCCGACACTGCTGGGCAGGTCCGTG
ACCTCAACGGTGGTGAGTGTCCGCCCCCCACATGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT593929.1\|WP_013160749.1\|1585400_1586657_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|274743
NZ_LT593929.1\|WP_097850947.1\|1591660_1593166_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|223362
NZ_LT593929.1\|WP_162467436.1\|1604807_1605419_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
NZ_LT593929.1\|WP_036939785.1\|1586680_1587754_+\|ionic-transporter-y4hA	unknown	unknown	gnl\|CDD\|223464
NZ_LT593929.1\|WP_013160750.1\|1584730_1585186_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_LT593929.1\|WP_013160742.1\|1593927_1594722_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|372611
NZ_LT593929.1\|WP_013160731.1\|1606994_1608188_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_LT593929.1\|WP_097850834.1\|1600708_1602151_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_LT593929.1\|WP_055346105.1\|1587817_1589761_-\|TIGR03960-family-B12-binding-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_LT593929.1\|WP_157763638.1\|1605529_1606762_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_LT593929.1\|WP_157763637.1\|1598674_1599424_-\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_LT593929.1\|WP_055344004.1\|1595940_1598568_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|380147
NZ_LT593929.1\|WP_112317735.1\|1593301_1593892_+\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_LT593929.1\|WP_036939422.1\|1583914_1584631_-\|DUF2344-domain-containing-protein	unknown	unknown	gnl\|CDD\|274865
NZ_LT593929.1\|WP_055346153.1\|1591105_1591501_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_LT593929.1\|WP_036939438.1\|1602269_1602584_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT593929.1\|WP_162484287.1\|1604094_1604730_-\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|237133
NZ_LT593929.1\|WP_013160735.1\|1602695_1603973_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_LT593929.1\|WP_013160738.1\|1599508_1600630_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_LT593929.1\|WP_097850831.1\|1589837_1591109_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|224185

Protein	Function_ID	Function_description	E-value
NZ_LT593929.1\|WP_013160749.1\|1585400_1586657_+\|TerC-family-protein	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	4.81625e-137
NZ_LT593929.1\|WP_097850947.1\|1591660_1593166_-\|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase	gnl\|CDD\|223362	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].	2.49318e-138
NZ_LT593929.1\|WP_162467436.1\|1604807_1605419_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	2.18184e-109
NZ_LT593929.1\|WP_036939785.1\|1586680_1587754_+\|ionic-transporter-y4hA	gnl\|CDD\|223464	COG0387, ChaA, Ca2+/H+ antiporter [Inorganic ion transport and metabolism].	5.28588e-72
NZ_LT593929.1\|WP_013160750.1\|1584730_1585186_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.80225e-13
NZ_LT593929.1\|WP_013160742.1\|1593927_1594722_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	2.43139e-13
NZ_LT593929.1\|WP_013160731.1\|1606994_1608188_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	3.02897e-38
NZ_LT593929.1\|WP_097850834.1\|1600708_1602151_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_LT593929.1\|WP_055346105.1\|1587817_1589761_-\|TIGR03960-family-B12-binding-radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	0
NZ_LT593929.1\|WP_157763638.1\|1605529_1606762_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	1.36199e-34
NZ_LT593929.1\|WP_157763637.1\|1598674_1599424_-\|HAD-IA-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	2.03516e-24
NZ_LT593929.1\|WP_055344004.1\|1595940_1598568_+\|valine--tRNA-ligase	gnl\|CDD\|380147	NF000540, alt_ValS, valine--tRNA ligase.	0
NZ_LT593929.1\|WP_112317735.1\|1593301_1593892_+\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	4.04887e-11
NZ_LT593929.1\|WP_036939422.1\|1583914_1584631_-\|DUF2344-domain-containing-protein	gnl\|CDD\|274865	TIGR03936, radical_SAM-linked_protein, radical SAM-linked protein. This model describes an uncharacterized protein encoded adjacent to, or as a fusion protein with, an uncharacterized radical SAM protein.	6.53569e-68
NZ_LT593929.1\|WP_055346153.1\|1591105_1591501_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	2.73522e-71
NZ_LT593929.1\|WP_162484287.1\|1604094_1604730_-\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|237133	PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed.	8.36876e-115
NZ_LT593929.1\|WP_013160735.1\|1602695_1603973_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_LT593929.1\|WP_013160738.1\|1599508_1600630_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	1.59722e-145
NZ_LT593929.1\|WP_097850831.1\|1589837_1591109_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|224185	COG1266, COG1266, Predicted metal-dependent membrane protease [General function prediction only].	2.33731e-08

>NZ_LT593929.1|WP_013160742.1|1593927_1594722_+|thioredoxin-domain-containing-protein
MASSNAAKSASRREQLRAAREREAAAARRKRIIIVTVVVVIIAALVAVIAMAASGVFSSKSGSSTKGTATTVSVRPPNASPGDKGVFSADNTNNSAPVLTVVDDFQCPACHQYETVYGPVFESLAKKGEIRLEYRTRYFLDINLKNDSSVRAARAAAIADTFGKYQEYHDTVFSNQPSQEGVGYTDDQLRNSFPQAAGITGDDLAKFQSSYDKGEMNAFVDAVDKNASADGYNSTPTFLSNDKQIKFTNSAPTEDYVMQIVKAA
>NZ_LT593929.1|WP_112317735.1|1593301_1593892_+|DoxX-family-protein
MLPTVSSEPSRVTPPRALRRPQDWRDWVGLALRLLTGVVMIWAGATKIGNLPLNVEQVKLYQLGLGDTLSTLIGYAQPPLELVVGALLVVGLFTRVASVLNGLAMIVFTFGIAWAWAHGLRLDCGCFGQGGILSSDQKPQYLWDIIRDIGLLAASVWLVIRPRTALSVDGWLFRPLSVDDDDHVPAHAEKTPHQGS
>NZ_LT593929.1|WP_097850947.1|1591660_1593166_-|bifunctional-folylpolyglutamate-synthase/dihydrofolate-synthase
MNSTQGLPADSPRHSLVTGGFDSGDPQRHAHIVSELTGRWPENRVGPSLDRIARLCELLGSPQRSAPVIQITGTNGKGSTAIMVDALLRAMGLRTGRFSSPHLQDLTERICIDGQPIAPDRFDELWEQVEPLVTMVDDQRLDGIEMTFFEVMTGLAYAAFADAPVDVMIMEVGMGGRWDATNVADAQVAVVGPVAMDHMQYLGDTIAEIATEKAGIIKAGSTAVIAGQSADAARVLAQRCLEVGAPMVREGIDFGLLDRQPAVSGQLLRLDTASGPIGDIFLPLLGAHMAHNAALALASVEAFMGGKGLDPTVIEAGFGQVVAPARLETVHSEPTVVLDTAHNPHGVKATLEALREAFTFRPLIAVVAMMADKQVDQVLAQLETVADTIVVSHVSGSRRAMSVAELADLATGIFGANRVRTADDVSQALSTAMGLAEQSGEGAGVLVIGSVYLAGEVRDILVGHDVTTVEQPLRLGADDLQVGERRPVIIDADDEDIDDED
>NZ_LT593929.1|WP_055346153.1|1591105_1591501_-|nucleoside-diphosphate-kinase
MVLLKPDAVRRGLVGEIVGRYERKGLRIRAMQLRHVDADLAAEHYAEHLGQPYYPAVEAFITSGPVVALALEGENAIAIVRAMHGATDPARALPGTVRGDYSLSTRMNLVHASDSRQAAQRELSLWFGQDA
>NZ_LT593929.1|WP_097850831.1|1589837_1591109_-|CPBP-family-intramembrane-metalloprotease
MSDNDHTPFEGVPGPQQWGPPQPVQAPQPWLPYPNAAPSVAGGGPTAPGWQYAPLRLVERDVPTTPTHYHGFWRTQRWRWWRVLLAAVVTVVGFFAAGFAFGLFGYAIDFARTGTVDGTGSGLTAGLFLGNNLALASLIPIALLVSLVFRQPMRWMSSVTGHFRWRWFGASLAWCLPFWIVLAVLSAVLGEQGGLGVNKDTVFMIFAVLLTTPLQCVGEEFLCRGVINRGVASFFPQTTRLLQVLSAIAGGAVSSVVFMLLHNAGDVWLNVNYFLFASIGCYLGWVTGGLEASSAMHIINNLTAMATLPFTDFSGMFNREAGSSSPAILLIDLTPVVLAAIVLTWRAHRKKITNVSAPGAAGPTAPPAPAQPIQPPAPYGQPGWTTGPQQGPSQEYPPQGYWGPRQFLGRVGAVPGRIRWGSA
>NZ_LT593929.1|WP_055346105.1|1587817_1589761_-|TIGR03960-family-B12-binding-radical-SAM-protein
MSGYRRPEPASQFEQLTPLLAQVSTPVQYVGGEINAQHKAWDDARVHWALLFPDTYGVGQPNQGMAILYEVLNELDWASAERSFSVWPDLERLMRAKGVGQFTLESHRRVSGYDVIGVSLSTELSYTNLLNALDLAGLPIHAAERDDDAPLVVVGGHCAFNPEPIADFVDVVVLGDGEEASLELSRIVRDWLDEGRPGGRVGVLERLAHTGMFYVPRFYQVDYAPDATISRIAPVRADIPATINRWVLTGLDDWPYPKAPVVPMAETVHERYSVEIFRGCTRGCRFCQAGMITRPVRERSVQTIESMVDRGLAATGLEEVGLLSLSSADHSEIDQIAGGLADRYAGTNTSLSLPSTRVDAFNVQLAQELSRNGRRTGLTIAPEAGSERMRAVINKNVSEADLMATVTAAFEQGWRSVKMYFMCGLPTETDDDVAAIARLAKQVVARGREISGSRDIRCTVSIGGFVPKSHTPFEWAPQATPEVIDHRIAIVKDAIREDRQFRKSITVRYSAGEPGQVEGLLARGDRRVGRVVEAVWRAGGRFDGWSEYFDYELWTRCAAEQLAPFGIDLEWFTTRERPQVEVLAWDHLDSGLDRTWLWDEYRSAIAGDQLADCRWDDCNDCGVCPLFGVDIELATEGQRPSSQQAAS
>NZ_LT593929.1|WP_036939785.1|1586680_1587754_+|ionic-transporter-y4hA
MHWTRVLPILAFAALIVSWIYHPTAALVLAVLTILLIGSIIASVHHAEVIAQKVGEPFGSLVLAVAVTVIEVGLILTLMASGKGSATLARDTVFAAVMITINGIMGLSLTVSAARHSTSRFSALGSGGALATVTALAGICLVLPRFTVSDPSPSYTPSQLAFAGVASLVLYGLFIAAQTGRHRSSFLPIDEDGMPIDTDDDSWTPTTAATLRSLGFLLIALVAVVGLAKILSPTIEAGVAAAGLPPGFVGVIIALVVLAPESLAAVRAARQNRVQVSLNLALGSAMASIGLTIPTLAVAMIWFPGEFYLGLGSTQIVLLVMSVLLAMLTIAPGRATRLQGGVHLVILAAYIFLAANP
>NZ_LT593929.1|WP_013160749.1|1585400_1586657_+|TerC-family-protein
MVPAAVWIATIILIVGLLAFDYFAHVRKAHSPSLREAAVWSAVYIGIAIAFGIVVMIVGGTEMGSEYFAGYITEKALSVDNLFVFLLIISSFAVPRKDQQKVLLVGIVFSIIARTGFIFLGAALINRFSWVFYLFGLILLITAGHTVKPDNEESHGSEADNLMIRLARKLLRTSDQYDDDKLFTVVDGKRMMTPMLLVMVAIGGTDILFALDSIPAIFGLTQSTYIVFTATTFSLMGLRQLFFLIDGLLDRLIYLSYGLGAILSFIGIKLILHALHENTVPFINDGESVPVIEITTGISLSVIIGVLVITVVTSLLSGAGKAQAAGARLRTETDRYLKLDEDTEADKREHRYRVLVRTAEQVEDVPPKHRDHIGDETELKAGVARAMHVHGRWRQEHGMRPMDAPASDDQEGTTEGRA
>NZ_LT593929.1|WP_013160750.1|1584730_1585186_-|MarR-family-transcriptional-regulator
MATGSGVEDTMLELARVMSRSSVRRRIHGSLADELSPTDTWLLTHLSEVGPMAMTELAQWQGVDRSTMTAQTQHLEKRGYLVREPSQRDHRVIMVGLSAMGERIAQVLRAAGRSAFGRAMGDWSPQEREMLDRLLSRLLAGLERSAQGDPG
>NZ_LT593929.1|WP_036939422.1|1583914_1584631_-|DUF2344-domain-containing-protein
MQRLRLRYSKLGVARFASHRDFSRAFERALRRAEVPMAYSSGFSPHPRISYANAAPTSAESHAEYLDIALVEQVDADQLADKLNGALPAGFRIEQVIESSKPSLTELLQASEWTIDLGAVDADALRAAVEALLAAPGLEVSRRTKKGLRVFDVRPAVLAAHVEGDHIWVRLRHGVPLVRPDDLVTGLRQLVPGLGDDHPGLFARLRQGPLGDDGSIIDPLLVAAPSRAPQDESPTDQP
>NZ_LT593929.1|WP_055344004.1|1595940_1598568_+|valine--tRNA-ligase
MSAMTAAPDSSAQDTRSAPASGSSGWKVPDRPVLEGLESKWAEAWEDEQLYAFKRPESRPQVFSIDTPPPTVSGSLHVGHVFSYTHTDVIARYQRMLGKQVFYPMGWDDNGLPTERRVQNFFGVRCDPSVPYDPDFQPPAKPDAKHQIPISRRNFIDLCRQLTKVDEKAFEQLWHQVGLSVDWKQLYTTIGEETQRISQLAFLRNYERGEAYMAEAPTMWDVTFQTAVAQAELAARDYPGAYHRLAFHRPDGEDVFIETTRPELVVSCCALIAHPDDTRYQHLFGTMVKTPIFGVEVPVLAHPAAEMDKGAGIAMCCTFGDLTDVLWWRELRLPTRTVIGRDGRFTRETPDWLPDPTFYDDKLAGKTVFSARAAMVEALKASGEMIGEPEPTQRKANFYEKGDKPLEIVSTRQWYIRNGGRDDELKQTLINCGDDIDFVPEYMRHRYTNWVEGLNGDWLVSRQRFFGIPFPIWYRLDANGDPDYDEPLMASAAELPIDPTSDVPDGYSEAQRGKPNGFMADPDVMDTWATSSLTPEIVTGWERDPELFKLTFPMDLAPQAHDIIRTWLFSRVVRAHFEFNEVPWARAMISGFVMDPDRKKMSKSKGNVVVPTDILDKYGADAVRWRAAMARPGLDSPFDERQMKVGRRLAMKVLNASRFVLGMGEATDPEEITVPVDVAEMTALRAVVAKATKDLEAFDYTSALEVTEEFFWSFCDDYLELVKERAYGAQGPRAAASANASLQLALSVILRLLAPFMPFVTEEVWSWWKPGSVHTASWPTVDELPSTGDPQLVTDVAAALILVRGAKSDAKVSMKTPVIDITLSGPATAVAHLKSAAADLSAVGHIETDIAWQEAGDEVGAQITLGEPPVKKKKN
>NZ_LT593929.1|WP_157763637.1|1598674_1599424_-|HAD-IA-family-hydrolase
MSPSQPLTLHVRALVLDMDDTINQTTPAMRVALRTAAVGLWPQVPKERLHAAVERYAFDGAGWFQRFSSGQIDFETMRRGRLADMAAQLDNQLSDQQYESFEESYRAVFIDSCRAFDDALRLLDRARAAQVPVAVLSNSAHHMTRRKIHRIGLDDRFTAVLCADQLGAGKPDPGAYLAACRAIGHEPGEVGYVDDLFRDAHGGAQAGLKAVWLDRIGEDGTPDSEHQVRSGDQAVPMIGGLDQLDVRLP
>NZ_LT593929.1|WP_013160738.1|1599508_1600630_-|6-phosphofructokinase
MSMRVGILTSGGDSPGLNAAIRGFGKAAVSTYGMELIGFRDGMRGLAENRFMQLDSHALSGILTTGGTILGTSRDKVHKMLVDGKVQNMIPVIKKNYEKNKLDALVCLGGGGTAKNAKRLSDAGMNVITLPKTIDNDLVGTDQTFGFATALEIATDAVDRLHSTAHSHHRIILTEIMGHRAGWLALGAGIAGGADVILLPEVPYNVESIAAAISRRSAHGSNFSVVAVAEGARNERDAAELAAADALVREADSPVARDAAKTHRANVEASHRAHTFTLATELEKATGLESRVTILGYVQRGGTPCGRDRVLATVLGTAGADLVAKGVFGVMVAAKGDGAEPVPLEEVAGKIRRVPVDHPWIRAAKEVGTGFGD
>NZ_LT593929.1|WP_097850834.1|1600708_1602151_-|threonine-synthase
MRYVSTRAASADASEPFSDILLEGLAPDGGLYLPVTYPRVDAQTLTRWRAVLAEQGYAALAAEVIGLYIDDIGHDDLLELCRRAYTAEKFGDPQIVPVTRIGDEPLWLGHLSNGPTAAFKDMAMQLLGEFFEYELRRRSSWLTIVGATSGDTGSSAEYAMRGRDGLSVVMLTPAGRMTPFQQAQMFGLQDPNIINVAVDGVFDTCQDLVKALNADAEFKHRWHVGAVNSINWARLVAQVVYYFACWLRVTTSADEQISFAVPTGNFGNVCAGHIARSMGLPIKRLIVATNENDVLDEFFHTGRYRVRGAVETVATSSPSMDISKASNFERFIADLFGRDGATVRRLFDQLARTGEFDISGTAQFTAVSQQYGFVSGHSSHADRLATIERLWTTDQILIDPHTADGVHVAEQFAGNEQIVVLETALPVKFADTIKEATGELPPVPPRFAHIGEGPRRVIEMGDDLGALKKLVADTVGTLRA
>NZ_LT593929.1|WP_036939438.1|1602269_1602584_+|hypothetical-protein
MPSFRVQFQVSGLRPGHRPDEVLEVARAAVVAPLHCDDVRLDMPAGVPTVTVRFTIAGSHDADEDARARRHGAQITQQVSQVAVVSPPRVLRRRGGSWLPIPAL
>NZ_LT593929.1|WP_013160735.1|1602695_1603973_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MARIGESGDLFKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIVEEEFSESTEKEQGGELPKPAEIVSFLNSYIIGQDAAKKALAVAVYNHYKRVQAQADSSSKHDDDVELAKSNILLIGPTGCGKTYLAQTLARMLNVPFAMADATALTEAGYVGEDVENILLKLLQAADFDVKRAQTGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQEFIQIDTTNVLFIVGGAFSGLEEIIADRVGQGGVGFTNDSVKRQPVGLDPFAGVRPEDLHTFGLIPEFIGRLPVITTVPRLDADVLRRILVEPRNALVKQFEKLFELDGVELELTDDAVSAVAEKAVTRNTGARGLRAILEETLLDVMFEVPSHEEIGQVVITGDVVHGDAQPTMLTRAEIAERHKLSA
>NZ_LT593929.1|WP_162484287.1|1604094_1604730_-|ATP-dependent-Clp-protease-proteolytic-subunit
MAPGGLATSPSAEYYIPQWEERTSYGVRRVDPYTKLFEDRIIFLGTPITDDVANAVMAQLLSLQSMDVDRPISIYINSPGGSFTALTAIYDTMQYLKPAVQTICLGQAASAAAVLLAAGAKGQRLALPNSRILIHQPAISGEGSYGQSSDLEIQAKEILRIRSLMEQMLADATGQPVERINRDVERDKYLTAEEAKEYGLIDDILTSLKDS
>NZ_LT593929.1|WP_162467436.1|1604807_1605419_-|ATP-dependent-Clp-protease-proteolytic-subunit
MLPSLAAGGASGFGLSDNVYQSLLANRIVFLGSEVKDENSNAICAQMLLLNAEDPHRDIYLYINSPGGSIDSGMAIYDTMQWISNDVATVALGLAASMGQFLLSGGAKGKRFALPHARILMHQPSGGIGGTASDVKIQAEQSIHLKHEMAALIAGHTGQTVEQIEKDSDRDRWFTAQQALEYGFIDHVYERASKISDTDAPNQ
>NZ_LT593929.1|WP_157763638.1|1605529_1606762_-|AI-2E-family-transporter
MQSDQDQFGTAGTSSQDDTGRTSPDVGGAATARAEDRPKKAGSSGATRSTSVAQGPFRGQPRWLPRMSVIFIAMIGIAGSIWLFRQLSWLLAPVFLGLNLVIAFYPIYSGLTRRKWPRALAAIVMALALLSVVILAVASMAWAVGTLIGAIPSYVPRIQAMYGDLMQFLVQHHISADAVSGFYSRIDPNNVLSALTGVLGSISGSIGAGTVALTTILMLLVDSVGWKRRLGMVEVGHPRAIGAIRDFAHGTRRYWLVSMVFGAIMAGLNAIELKILNVPLMGVWVVLTFITTFIPSVGFFFAMVPPVIVALVVNGWQNALWLMAIYFVTTWIVQGFFQPKFTGNAVGVNITTSFISLLFWAWLFGPLGALIALPATQLVKSLVLDADPKSRWVSALIAPEPSVVGADPQT
>NZ_LT593929.1|WP_013160731.1|1606994_1608188_-|AI-2E-family-transporter
MSQPEEAEPVIPDGATAAYALAEDDGTTVAGPTSPTQAAAPPTRSPGIPRYLQIAGGIVLSLGALLLLKEFGSTFAPMFLALNLMVTAYPLHTWLVRKGCPSPLSAVTTALVVFVVLLAMVAGLVWSVNETVTLLPQYADEFTGLFNWFIDRAAQLGFDQASLMQAFKSIDPNSIFSAASSVLNGASGFVAMLAILVTTLVFMAMDTSGFAARIRIAGATHSRMVTGLVSFSRGIRRYWVVTSVFGLIVAVLDVIAVAIIGVPLPIVWGLLSFLTNYIPNIGFVVGLIPPALVALVALGWKQALVVVVLYCVLNFVVQSIIQPRFTGESVGVTPTISFISLLVWGLVLGGLGTLLALPMTLLVKALIIDTDPRARWVNAFIASNPGDAQGAAQQAEL

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Crispr_ID: NZ_LT593929_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT593929_2

1770423-1770521

Orphan

Consensus_repeat	Method
GGTCAGCCCAACAAGCTGACCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT593929_2

>merge|NZ_LT593929|2|1770423-1770521|CRISPRCasFinder
GGTCAGCTCAAGGAGCTGACCCACGGGATCTGCAACGGGGTCAGCCCAACAAGCTGACCCACTGGATCCACCACAGGTCAGCCCAACAAGCTGACCCAC

>NZ_LT593929|2|2|1770423-1770521|CRISPRCasFinder
GGTCAGCTCAAGGAGCTGACCCAC	GGGATCTGCAACGGGGTCAGCCCAACAAGCTGACCCACTGGATCCACCACA
GGTCAGCCCAACAAGCTGACCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT593929.1\|WP_013160594.1\|1766743_1767784_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_LT593929.1\|WP_060761610.1\|1765991_1766747_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_LT593929.1\|WP_097850853.1\|1781229_1782210_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380532
NZ_LT593929.1\|WP_013160586.1\|1774539_1775427_-\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|370378
NZ_LT593929.1\|WP_048768960.1\|1778504_1779563_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_LT593929.1\|WP_013160588.1\|1772912_1773248_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_LT593929.1\|WP_041704499.1\|1773547_1774489_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176205
NZ_LT593929.1\|WP_013160584.1\|1777479_1778508_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|183235
NZ_LT593929.1\|WP_036939900.1\|1771372_1772566_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|226951
NZ_LT593929.1\|WP_013160585.1\|1775631_1777185_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_LT593929.1\|WP_013160580.1\|1782453_1783491_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380488
NZ_LT593929.1\|WP_013160601.1\|1757252_1758113_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|237637
NZ_LT593929.1\|WP_013160592.1\|1768882_1769899_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_LT593929.1\|WP_060761617.1\|1767854_1768811_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965
NZ_LT593929.1\|WP_013160596.1\|1764681_1765935_+\|cardiolipin-synthase-B	unknown	unknown	gnl\|CDD\|224419
NZ_LT593929.1\|WP_013160597.1\|1762055_1764545_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273429
NZ_LT593929.1\|WP_013160602.1\|1756923_1757247_-\|DUF3017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378602
NZ_LT593929.1\|WP_081083471.1\|1759861_1760710_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|235544
NZ_LT593929.1\|WP_013160590.1\|1770677_1771376_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_LT593929.1\|WP_013160600.1\|1758186_1759740_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854

Protein	Function_ID	Function_description	E-value
NZ_LT593929.1\|WP_013160594.1\|1766743_1767784_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.00184e-95
NZ_LT593929.1\|WP_060761610.1\|1765991_1766747_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	2.51766e-138
NZ_LT593929.1\|WP_097850853.1\|1781229_1782210_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380532	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.	1.83684e-99
NZ_LT593929.1\|WP_013160586.1\|1774539_1775427_-\|DUF1963-domain-containing-protein	gnl\|CDD\|370378	pfam09234, DUF1963, Domain of unknown function (DUF1963). This domain is found in a set of hypothetical bacterial proteins. Its exact function has not, as yet, been described.	2.43747e-44
NZ_LT593929.1\|WP_048768960.1\|1778504_1779563_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	5.04895e-61
NZ_LT593929.1\|WP_013160588.1\|1772912_1773248_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	7.54301e-21
NZ_LT593929.1\|WP_041704499.1\|1773547_1774489_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176205	cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.	3.12165e-127
NZ_LT593929.1\|WP_013160584.1\|1777479_1778508_-\|sugar-ABC-transporter-permease	gnl\|CDD\|183235	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional.	1.75529e-91
NZ_LT593929.1\|WP_036939900.1\|1771372_1772566_-\|ATP-binding-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.63584e-25
NZ_LT593929.1\|WP_013160585.1\|1775631_1777185_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_LT593929.1\|WP_013160580.1\|1782453_1783491_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380488	cd01574, PBP1_LacI, ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.72778e-103
NZ_LT593929.1\|WP_013160601.1\|1757252_1758113_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase	gnl\|CDD\|237637	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional.	3.49323e-163
NZ_LT593929.1\|WP_013160592.1\|1768882_1769899_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	3.89977e-74
NZ_LT593929.1\|WP_060761617.1\|1767854_1768811_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	3.09458e-123
NZ_LT593929.1\|WP_013160596.1\|1764681_1765935_+\|cardiolipin-synthase-B	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	7.67668e-76
NZ_LT593929.1\|WP_013160597.1\|1762055_1764545_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LT593929.1\|WP_013160602.1\|1756923_1757247_-\|DUF3017-domain-containing-protein	gnl\|CDD\|378602	pfam11222, DUF3017, Protein of unknown function (DUF3017). This bacterial family of proteins with unknown function appear to be restricted to Actinobacteria.	2.63412e-16
NZ_LT593929.1\|WP_081083471.1\|1759861_1760710_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|235544	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed.	1.37776e-90
NZ_LT593929.1\|WP_013160590.1\|1770677_1771376_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.02291e-65
NZ_LT593929.1\|WP_013160600.1\|1758186_1759740_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0

>NZ_LT593929.1|WP_013160592.1|1768882_1769899_-|ABC-transporter-substrate-binding-protein
MSSTRFTNRGTLAVVALSAALLAGGLTACSSGAGSDTSPATHSAAALSSIEITDNNGTHTVTTPPQSVVALDNRTFETLSQWGVGLKAAAVSLMPSTISYTTDKSIVDIGNHREPNLEAIVAAKPDLVINGQRFTQYTDEIKSLVPDTTILDLDPRDGEPFDQELKRQTTVLGEVFGKQAEAKKLNDDLDGAIARVKKAYKPADTVMAVNTSGGEIGFIAPHVGRALGPVYDFAGLTPALQVQGSSKDHKGDDISVEAIASSNPTWILVMDRDAAISADDPSYKPASELLKNSQALAGVTAVKEGNIVTMPADTYTNESIQTYTEFLNDFAAALESRA
>NZ_LT593929.1|WP_060761617.1|1767854_1768811_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MPDRKLLDPKLLVGIVVVAGLLVLSLTTGVYDVFGASDGSRMFQITRVPRTVALVLAGAAMAMSGLVMQLLTQNRFVEPTTTGTTEWAGLGLLLVMVIAPNASIGTKMAVAVVAAFLGTMVFFAFLRTVTLRSSLIVPIVGIMLGAVVSSISTFIAIRMDALQSLGVWFAGSFTSILRGQYEILWVVAAVGVAIFLVADRFTVAGLGKSVATGVGMNYERIILMGTGLVAVATGVVTVVVGNLPFVGLIVPNIVSLARGDDLRSNLPWVCLLGIGLVTVCDPLGRVIIMPFEIPVSLILGIVGSVVFVVLLLRQRRRG
>NZ_LT593929.1|WP_013160594.1|1766743_1767784_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MVVDTPTRETPPVRTHTGAFATRAARRRYLVVVVGLAVAAVAASFGLLAWANPMPVGSRGFWKIAQRRLASLVVIAVVAFSQALATVAFQTITNNRIITPSIMGFESLYRAVQTSAVYFLGVAGVVALQGVPQFLIQVAVMVALAVALYGTLLSGRHANLQVMLLIGIVIGAGLGSVATFMQRMLSPSEFDVLSARMFGNISNAEASYLPVAVPLCLAAGLGLWVRSQRLNVMALGASAATGLGLNHRRETMLGLTLVSVLIAVSTALVGPMTFFGFLVATLTYSLAGTHDHRRIFPVAVLTGFVVLAGAYFVMRYVFYAQGMVSVIIELVGGTTFLIVLLRKGRL
>NZ_LT593929.1|WP_060761610.1|1765991_1766747_-|ATP-binding-cassette-domain-containing-protein
MIALADVLKKYSPEVCIGPVDLHIPDGGITALVGPNGAGKSTLLTMIGRLLGLDTGVIEIAGYDVARTKSADLARVVSVLQQENHFVTRLTVRQLVGFGRFPCTHGRLSAADEELVDQALDFLALRDLEARYLDELSGGQRQRAYVAMVLAQDTEYVLLDEPLNNLDMRHSVQMMRHLHRAARELGRTIVIVLHDINFAGRYADHICAMKDGRVAAFGPSDEIMDSAVLTEVFDTPVDVVQGPHGPLAVYY
>NZ_LT593929.1|WP_013160596.1|1764681_1765935_+|cardiolipin-synthase-B
MRLPPATGRVVRNALLGILGAQLGAAGVLVAADNVRKHRAGPARFPRSAVTQARADDDLVSVYSYGEDLYNDMLTAIRRAKHTIFFETFIWKNDPIGQDFKQALIEAANRGVAVYIVYDQFANMVVRPSFFRFPDNIHVKRHPLVQSVAFWNLRNSGRDHRKILVVDSRVAFMGGYNIGSRYARTWRDTHARFEGPSVADFENAFVDYWNLRPVHLLSSQRSSMPELPDTSQRRWDGSVRLSRNTPRWAVFPIRNMYLEAIDKAQRNIWLTSAYLIPDDDLRTALARAAQRGVDVRIIVPAQSNHVIADWLSRGYYTGLLRDGIRLFLFHNAMVHAKTATIDGHWSTIGTANIDRLSLAGNYEVNAEITSPQVATALERIFLTDQSNCTEMDLARWERRSIVAKGTEWLLAPWRPLF
>NZ_LT593929.1|WP_013160597.1|1762055_1764545_-|UvrD-helicase-domain-containing-protein
MTDQTPPDLFSAFDQRLSALGAPGSGEGFAPHTPHDAHDDAEALLHGLNPPQEQAVVHEGSPVLVVAGAGSGKTRVLTRRIAWLIAQRGVHPGSILAITFTNKAAAEMRSRVAELVGPRTRTMWVSTFHSACVRILRTELAEAPELGLRRNFSIYDDTDTKRLMTLVLRDQNLDTKKFPPRTVMGWISNAKNELLGPGAAAEQADNGNEELYAQAYEEYQRRLRAANAMDFDDLIMITVQLLHDHPDIREKYRRRFRQVLVDEYQDTNHAQYLLIRELCAPNEDQIDAPRVDPPELLVVGDSDQSIYAFRGADVRNILDFEQDFPGARTILLEQNYRSTQTILSAANAVIQHNSGRPVKKLWSDAGDGDKIIGWVADTEHDEARWVAEKIDELHDHQQAAYSDAAVFYRTNAQSRAFEEVFIRLGLPYRVVGGVRFYERREVRDALAYLRAIANPADDVSIRRIINVPKRAIGARAETALEMFAVSQSIPFSQAVDRAAEVPGLATRSRHQVESFASMMAGFRGLVAAGSSADEVVAAVLKDSGLLDELKDSKDPQDETRVENLVELVAVAQEFVAQAHTLDLSAGLRPDAPGDQDAPELADELVAGMPEADDSLGAFLERIALVADSDQIPDSDPDSAGVVTLMTLHTAKGLEFDNVFLTGMEDGIFPHMRALADPAELSEERRLAYVGITRARRRLFMSRAAVRTVWGQPQYNPPSRFLEEIPAELIDWQRTGADLTSWGSSASARTASARRQTSTGGPVFGSGHGDLPRTKTVASLEPGDRVLHSSFGMGTVVAAAGSGNNATADVDFGSAGVKRLALRFAPLEKL
>NZ_LT593929.1|WP_081083471.1|1759861_1760710_-|phosphoribosylglycinamide-formyltransferase
MCSSSSHVAALPHRALLPNRQAPARSVRRCVPCCVVAGRRRCPRRPGPTTTTPPTRHRPLIPAAGQRTRCTATKGRLPGVAYRVVVLVSGSGTLLQALLDAQAAGALDARIVAVGSDQPGCRALARAQDAGVDTFVVPMTTLLPRGSAARQAWDEEFARAVDACSPDLIVLAGFMKLLGEPFMRRFAGRVINTHPAMLPAFPGAHAVRDALTAGATTTGSSIFWVDDGVDTGSLIVQEPVPVHPGDDEDTLHERIKVTERRLLVATVNELARRAPAGDPTSV
>NZ_LT593929.1|WP_013160600.1|1758186_1759740_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTDPTRAPIRRALVSVYDKTGLEELGRALAAAGVEIVSTGSTARKLSEAGVEVVPVEQVTGFPETLDGRVKTLHPAVHAGILADRRLESHRRQLDELGIKPFDLVVSNLYPFSQTVASGADFDECVEQIDIGGPSMVRAAAKNHPSVAIITSPDQYSQLTDALAQGGFTLAERRVLAAKAFAHTAAYDASVASWFAEQTTDEGLPGFIGQAATKLHDLRYGENSHQRAAVYAAEGAAPGLVGAEQLGGKEMSYNNYTDADAARRAAYDFSGPAVAIIKHANPCGIAVGSDIADAHAKAHACDPVSAYGGVIAANQIVTLAMAQQVKPIFTEVIVAPDFEPAALELLQTKKNLRILKAEDFHFDKFLWREISGGLLASDPDRLDAPGDQTSGWKLVAGPAADAAMLSDLLFAWKACRSVKSNAILLAHDGASVGVGMGQVNRVDSCRLAVSRAGDRAKGSVAASDAFFPFSDGPQILLDAGVSAIVQPGGSIRDEETIEAASKAGVTMYFTGNRHFFH
>NZ_LT593929.1|WP_013160601.1|1757252_1758113_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase
MTAQRLDGKAVAAQIKIELKQRVDALREQGVIPGLGTVLVGDDPASQIYVNGKHRDCEQVGIESYRVDLPADATPEQVERSIRVLNDSTMCTGYIVQLPLPPQIDPNWALELIDPDKDADGLTSDNLGKLVLGRSGVLPCTPRGIVELLRRYEIPLDGAKVCVVGRGTTVGRPLGLLLTRRDVNATVTLCHTGTKNLAEETRQADIVIGAAGHPGLVTASMLKPGAVVVDVGVRRIEGKPVGDFTADVWDVASYVTPNPGGVGPMTRAMLLVNVVERAEQIAAQEQ
>NZ_LT593929.1|WP_013160602.1|1756923_1757247_-|DUF3017-domain-containing-protein
MTPAPPSSTKQPVAAPLKLDRLRAQWPLLLCLAFFVAGMAVTAAAHWRRGAVLMGAGLGLAGVLRLFLPPRLAGLLVVRRRWFDVLVGIVGGTTMCVLAILVPPLER
>NZ_LT593929.1|WP_013160590.1|1770677_1771376_-|response-regulator-transcription-factor
MTSLPGPLTTDEPRPEGPRRVVLVDDHDIFRAGVRHELTAAAPDEIDVVGEAGDVEQAVKVITGTTPDVVLLDVHLPGGGGAEVVRQVHQIDPKITFLALSVSDAAEDVIAVIRAGARGYVTKSISTADLVEAIGRVATGDAVFSPRLAGFVLDAFSGSISVESIDEDLDRLSQREREVMKLIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNRHELTKWATDRKLV
>NZ_LT593929.1|WP_036939900.1|1771372_1772566_-|ATP-binding-protein
MRGSWLGGVCTGIADYLGSPVWPVRLCFVLLAMTAYLGVVAYAALWAFLPIKDEAAEQARAVRPARKPRSSRRQDLEVWLSIGLVLLLCLGLLVLSRLFGLGSIHAFFWPVVLAAVGIGLVWRQADQPEEEPDRLVPRWMAPLVSSSKWATVLRMGLGMTLVGASVLLVAYTQVDGPYLPAVLGMVALALAGFGVLTAPWMNRMRSNLARAHEEKLVADARADMAAHLHDSVLQTLALIQRQADDPKAVASLARRQERELREWLYGEAPGPRDFRAALRDAGAQVEDSSGVRVEVICVGDATLNDGLSAMILAAREAMMNSAKHSGADHIDVYAEVDDDHVELFVRDRGVGFDAEQIRADRMGVRRSIIERMERHGGTAQVRSAPGEGTEVKLEIAR
>NZ_LT593929.1|WP_013160588.1|1772912_1773248_+|PspC-domain-containing-protein
MRTAGAVQTPIQEEPMGTKQLVRRHDNRWIAGVAGGLADYWGIDALAVRLGFIILGLVTFGTAFWAYLICWLLIPDGVDGSKGLDAVKRTINGFRDKNDGPQDFNPYDDTK
>NZ_LT593929.1|WP_041704499.1|1773547_1774489_+|zinc-binding-dehydrogenase
MLAMVLDHPGGADTFRPEERPIPEATATHSVLEVMAFGVNHAELITRAGGSPDVRFPRVIGIEAVGRVHATSPASGLEVGQRVVTLMGGLGRDFDGSYQEYALVPNSQLYPVGIEMAWNRLATIPESFYTALGSLDRMHLTAGDALLIRGGTSSVGLAAMQLAKSFGVRVTSTTRSPGKIARLEALGADEVLVDAGTLPGTERFDGVLELVGAATLDDSMGHAAPRGCVVVTGGLGGQWTVPDFDPFSIRGYLTNFQSTEVNPALLRHMLTLVAQQGLSLPIVGEFPLPDVGRAHEALETSTEMGKIVVSVAH
>NZ_LT593929.1|WP_013160586.1|1774539_1775427_-|DUF1963-domain-containing-protein
MSQDLKQALFGVFDAVQKNAIKLDFGADPEPGEAGQSRLGGRPDVPRDFEWPRFQDKDDDSADANRPLTFLAQVNLADATRYDTEGLLPTAGVLSFFYEMETQEWGFDPRDKGSARVFFFEDPATLRPASVPDDLDDWFPDGQAISYRNMVDLPAWLGFTELPEEVRRTNPLPVPLTDIEWEDYDAMREEYGAPSEGDDAVTTKLLGHPDVVQNPMEAECEMVTRGMADGAEGEEISQELRDDIEKASRDWTLLFQMGTDSGLEFGDVGHINYWIKKQDLARRDFDKAWLILQCG
>NZ_LT593929.1|WP_013160585.1|1775631_1777185_-|glutamine-hydrolyzing-GMP-synthase
MPASHDLVLVVDYGAQYAQLIARRVREAHVYSEIVPHAMSVDEMVAKKPTAIILSGGPASVYVPDAPKVDPALFSTGIPVFGICYGFQLMAGALGGTVEHTGTSEYGRTSVAIDDTGVLLHDLDDISSVWMSHGDSVTAAPAGFASLARTAGAPIAAFEAPERKLAGVQWHPEVAHTERGQEVIEHFLFDFAGCKPTWTSSSIVDDQVSRIRAQVGDKRVLCALSGGVDSAVAAALVQRAIGDQLTCCFIDHGLLRKGEAEQVKHDFVQITGVDLVVADESERFLSALAGVSEPEAKRKIIGREFIRSFEDVARQIAGDKGIDFLVQGTLYPDVVESGGGDGAANIKSHHNVGGLPDDLQFTLIEPLRALFKDEVRAVGAELGLPDSMVWRQPFPGPGLGIRIVGEITQDRLDLLREADAIAREELTAAGLDREVWQMPVVLLADVHSVGVQGDGRTYGHPIVLRPVSSEDAMTADWSRLPYDLLEKISTRITNQCPEVNRVVLDVTSKPPATIEWE
>NZ_LT593929.1|WP_013160584.1|1777479_1778508_-|sugar-ABC-transporter-permease
MSAQTLNAAVPTRALPSWLKIDRKRIPTLASVVIFLIMIIYGQAAYGQTLTMSTASNLLINNAHLIILAVGMTFVILTGGIDLSVGAVIAFSSVLGAQLLNAGWNPVLVMGIIVVVGGLFGLASGVLVQYFRVQPFIATLAMMFLARGLASILSTTPIRLDDASGFRTLATQWKVIDGPKVNDLVITPNVLIAVVVVVAGFFILHRTRTGRTVYAIGGSEPSAELMGLPVNRTKYLIYVISGLCAGIASVVYTSKLGMAQNVTGVGWELDAIAAVVIGGTLLLGGAGYVLGSVLGALVLGLMNVLIARDGSIPPEATTIITGAILLLFVLLQRAVVKRDHND
>NZ_LT593929.1|WP_048768960.1|1778504_1779563_-|ABC-transporter-permease
MKAIVKNQYFWGIIALLLLIMVDVIKDPSFVRITVNNGNLYGSLIDILRGSAPVLMIAIGMTLVIATAGIDLSVGSLMAVSGAVSMEFLASAAHSGSTGAVLTALGLSLLVTVLLGAINGLLVSVVGLQPFITTLIMMMTGRGIAKVITGGQNTSARSDGFAWISTGTVFGFPVAFVIAIAIVALVALVVRRSALGMTIESVGINQRASRMAGIKPLYILFSVYVISGLLAGMAGVFATANVMTVEVSKTGMDMEMDAILAVVIGGTSLAGGRFSLGGSAIGALLITTLNRTVTFLNVPSAATPAFKAAVIIIVCLLQSERVRNLFKTLKRSRRVVEAAPARVEEVKEVVAA
>NZ_LT593929.1|WP_097850853.1|1781229_1782210_-|ABC-transporter-substrate-binding-protein
MRKLLKLIAALGAFALALTGCSGGGSGSDSGSSSKTLTVGFVAVGPEGGWRTANKTNIQNTFSKDNGINLKYAPSDNGDQASQITAMTSFIDEGVDAILLSATEATGWENVLNRAKEAEIPVFLLDRGIEPDNTSLYASRIAPDNVAISESAANWAVKQFPEGAKYVVLEGPAGLSVVNDRNKVWDSVMSTHPEFQKIASQSANWSQNDGKSVTETLLKANPGIQLIFAQNDEMGLGATQAVTEAGLTPGKDVKIITIDGTKAALESLSAGQLSFVAEYNPLFGDIALNAVKKAKVGEHVDALYTVDSVTFDSPEAAKAALPNRAY
>NZ_LT593929.1|WP_013160580.1|1782453_1783491_-|LacI-family-DNA-binding-transcriptional-regulator
MAAGTAPNIRDVAELAGVSHQTVSRVINDHPSIQPQTRARVEAAIKTLGYRPNSAARSLARMRTGRIGAIVDSPEHFGPMNTLRGVEVASRRAGYFLSSVSVNDDSVDAINQSLEFLLDQNVEGLCLIAPRLPLLEVIRRRGLQIPSVVIATDTAHLVDDNGLQASVDQELGTRMMVDYLLELGHTRIAHLSGPHDWGDARSRRATFEATLAAHGLTPAAIVEGDWSPDSGFAAGPGLIEGTGATAVFSANDQMALGLVHYLSEVGLRVPDDVSVVGFDNTPESAHMIPPLTTVRQNFEKLGEMAIGSLLARIKGARVERETLRTQPSLVVRSSAGPRPATQRSR

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Crispr_ID: NZ_LT593929_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT593929_3

2201138-2201206

Orphan

Consensus_repeat	Method
GAACAGCCCCACACCGAACGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT593929_3

>merge|NZ_LT593929|3|2201138-2201206|CRISPRCasFinder
GAACAGCCCCACACCGAACGGCCCGGTACCGGACAACCGGGTGCCGAACGGGCGGGCACTGAACAGCCC

>NZ_LT593929|3|3|2201138-2201206|CRISPRCasFinder
GAACAGCCCCACACCGAACGGCCC	GGTACCGGACAACCGGGTGCC
GAACGGGCGGGCACTGAACAGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT593929.1\|WP_013160146.1\|2211285_2211573_+\|cell-division-protein-CrgA	unknown	unknown	gnl\|CDD\|179394
NZ_LT593929.1\|WP_055346713.1\|2193034_2193784_-\|electron-transfer-flavoprotein-subunit-alpha	unknown	unknown	gnl\|CDD\|238847
NZ_LT593929.1\|WP_013160219.1\|2195502_2195919_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT593929.1\|WP_055346795.1\|2213148_2214495_-\|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl\|CDD\|237001
NZ_LT593929.1\|WP_055343524.1\|2190818_2192123_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_LT593929.1\|WP_097850899.1\|2209615_2210260_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223586
NZ_LT593929.1\|WP_052826850.1\|2195972_2196347_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT593929.1\|WP_048769340.1\|2185877_2186504_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|225500
NZ_LT593929.1\|WP_155488437.1\|2204297_2205038_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT593929.1\|WP_097784428.1\|2211888_2212923_+\|DUF4862-family-protein	unknown	unknown	gnl\|CDD\|374399
NZ_LT593929.1\|WP_055346803.1\|2208719_2209574_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381364
NZ_LT593929.1\|WP_048733801.1\|2190511_2190805_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|225289
NZ_LT593929.1\|WP_097850898.1\|2205195_2208591_+\|PPi-type-phosphoenolpyruvate-carboxykinase	unknown	unknown	unknown
NZ_LT593929.1\|WP_036942895.1\|2192125_2192998_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_LT593929.1\|WP_097784425.1\|2202851_2204294_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_LT593929.1\|WP_013160147.1\|2210372_2211107_-\|DUF881-domain-containing-protein	unknown	unknown	gnl\|CDD\|377575
NZ_LT593929.1\|WP_097807257.1\|2196472_2197804_+\|ISL3-like-element-ISPfr3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_LT593929.1\|WP_013160179.1\|2186801_2188574_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_LT593929.1\|WP_044635852.1\|2193947_2195258_-\|ISL3-like-element-ISPfr18-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_LT593929.1\|WP_013160143.1\|2214505_2215480_-\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101

Protein	Function_ID	Function_description	E-value
NZ_LT593929.1\|WP_013160146.1\|2211285_2211573_+\|cell-division-protein-CrgA	gnl\|CDD\|179394	PRK02251, PRK02251, cell division protein CrgA.	3.69373e-32
NZ_LT593929.1\|WP_055346713.1\|2193034_2193784_-\|electron-transfer-flavoprotein-subunit-alpha	gnl\|CDD\|238847	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.	2.90629e-42
NZ_LT593929.1\|WP_013160143.1\|2214505_2215480_-\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	3.94902e-153
NZ_LT593929.1\|WP_055346795.1\|2213148_2214495_-\|2-oxo-acid-dehydrogenase-subunit-E2	gnl\|CDD\|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	6.17108e-127
NZ_LT593929.1\|WP_055343524.1\|2190818_2192123_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.43778e-125
NZ_LT593929.1\|WP_097850899.1\|2209615_2210260_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|223586	COG0512, PabA, Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism].	6.89672e-108
NZ_LT593929.1\|WP_044635852.1\|2193947_2195258_-\|ISL3-like-element-ISPfr18-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	5.58147e-76
NZ_LT593929.1\|WP_048769340.1\|2185877_2186504_-\|YdcF-family-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	3.37873e-47
NZ_LT593929.1\|WP_097784428.1\|2211888_2212923_+\|DUF4862-family-protein	gnl\|CDD\|374399	pfam16154, DUF4862, Domain of unknown function (DUF4862). This family consists of uncharacterized proteins around 300 residues in length and is mainly found in various high GC Gram+ bacteria, but also in several pathogenic and non-pathogenic enterobacteria (Salmonella, E. coli). Distant homology analysis suggests this could be a branch of Xylose isomerase-like TIM barrel family, but this prediction is currently not confirmed by experiment.	7.98355e-122
NZ_LT593929.1\|WP_055346803.1\|2208719_2209574_+\|aldo/keto-reductase	gnl\|CDD\|381364	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins. Escherichia coli YeaE is the prototype of this family. It acts as an aldo-keto reductase (AKR) that catalyzes the reversible reduction of ketones to the respective alcohols using NAD(P)H as a hydride donor.	2.68377e-136
NZ_LT593929.1\|WP_048733801.1\|2190511_2190805_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.15049e-24
NZ_LT593929.1\|WP_036942895.1\|2192125_2192998_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.20087e-65
NZ_LT593929.1\|WP_097784425.1\|2202851_2204294_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.49971e-50
NZ_LT593929.1\|WP_013160147.1\|2210372_2211107_-\|DUF881-domain-containing-protein	gnl\|CDD\|377575	pfam05949, DUF881, Bacterial protein of unknown function (DUF881). This family consists of a series of hypothetical bacterial proteins. One of the family members YlxW from Bacillus subtilis is thought to be involved in cell division and sporulation.	3.64874e-50
NZ_LT593929.1\|WP_097807257.1\|2196472_2197804_+\|ISL3-like-element-ISPfr3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.68243e-77
NZ_LT593929.1\|WP_013160179.1\|2186801_2188574_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	7.62012e-58

>NZ_LT593929.1|WP_097807257.1|2196472_2197804_+|ISL3-like-element-ISPfr3-family-transposase
MHDATVGGRADAFASPDLTAFCRLDELGLVVTGQRLEPDRAVLACQVVEPDQWCRRCGCEGRPRDTVVRRLAHEPLGWRPTTLEVVVRRYRCSGCGYVWRQDTTAAAEPRAKLSRRALRWALEGIVVQHLSVARVAEGLAVAWDTANDAVLAEGKRVLIDEEHRFEGVKVVGVDEHVWRHTRRGDRYVTVIIDLTPVRDGTGPARLLDMVEGRSKQAFKTWLADRPQEWRDGVEVVAMDGFTGFKTAAVEELPDVVTVLDPFHVTRLAGEALDECRRRVQQAICGHRGRKGDPLYAARRTLSTGADLLNDKQKDRLDTLFADDAHVEVEVTWSVYQRMIAAYRHENRRHGRELMARLIDSISTGVPKALVEITKLGRTLKKRAADVLAYFDRPSTSNGPTEAINGRLEHLRGSALGFRNLTNYIARSLLKTGGFRPRLHPGFG
>NZ_LT593929.1|WP_052826850.1|2195972_2196347_-|hypothetical-protein
MSQDSSTGFAQIFSATAIWAHNWALGQGLISGSTWDASDWHTVWAVWQDLHGDDDYNLSAVPQVLMAGAADVGITGSPRLDYTSAQITSILARYNGTGSAAADYGQEVRGVYNVFEQYNAALRG
>NZ_LT593929.1|WP_013160219.1|2195502_2195919_-|hypothetical-protein
MNDQAVSSQPTVFRRVMFGVAILLCDLLSAALSYWPLVMIGLVLMQVKANVIGPAEHIVGAGEDSLAFMVFYVVSAIVVLMLAVLPAVIGNLALRRRAGWPPRVCVAVAAAVILAPAVAAVVAPLTMNEIWYRATHWW
>NZ_LT593929.1|WP_044635852.1|2193947_2195258_-|ISL3-like-element-ISPfr18-family-transposase
MHHPTFVTPDLTTFCRLDELGLQAVGQLLEADRAVLECRVVEDDPWCRKCGAEGVPRDTVTRPLAHEPFGHRPTTLLVRVRRYRCTHCRRTWRQDTSKAAAPREKISRGGIGWALTAIVVDHLTVSRAAAGLGVSWHTANTAIIAEGKRRLIDDPARFDGVTTIGVDEHVWRHTRFGEKYVTVIIDLTPARNKTGPARLLDMVEGRSKQVFKEWLAARPAEWSSRIEVVAMDGFSGFKTAAAEELPDAVPVMDPFHVVRLAGDALDRTRQRVQQDTLGHRGHAGDPLYGVRRTLHTGASFLTKKQTARLDAVFAAEEHVEVEATWGIYQRIVAAYREPDKNKAKEMMRAVIDSVSNGVPALLKEIRRLGRTLKQRAADILAFFDRPGTSNGPTEAINGRLEHLRGSALGFRNLTHYVARSLLEAGGFRPLLHSHSR
>NZ_LT593929.1|WP_055346713.1|2193034_2193784_-|electron-transfer-flavoprotein-subunit-alpha
MVVAYKYAPNPQDAEVRGDGTVDWSRAKSAVSEYDPVAVQLGRELAGDAEVVGISVGGADVASSMAKKNAMSRGLDRGLVVADDAAADWNATRTASALAALVKKVDGADLLLTGDSSVDEGAKMMSALVAGYLGWPCFQEVSALEKTDNGYRVTQDQPGGRRVVEVTGPLVVAVAADAVKPKVPGMKDILAAGKKTVEVVPVADLEVSDAAIAITASEKPAAPARKQQILSGDDAAAQLVAALRADSVL
>NZ_LT593929.1|WP_036942895.1|2192125_2192998_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MTNTWIVTTNAQIGNLVEAGRALGGTITVVAVGDAQIAGVDKVISITADADVPAEAYAGAVADAVAAGDQDVVLAPNRPAERVLAGAVAARLNAPVLSSVKKVDAEGAHVARFGGITLQTDALTARAVLIMDGGPAPEGDPVAAESVAAQAYPATVSSTESAQGERVDLTTAQRIIACGRGFKEQSELSLAQDAANAMDAQLACSRPLAEGVNWFDKDRYIGVSGLTVAPDVYVAVGISGQIQHLAGMLDSKVVVAINNDKNAPIFKAADYGIVGELEQVLPQLTEALKA
>NZ_LT593929.1|WP_055343524.1|2190818_2192123_-|FAD-dependent-oxidoreductase
MADEDEDIFDVVVIGGGVAGCTAAYKLAQQGHSVVLIERAAQPGSKNLSGGVFYCRVMEQVFPGFVDNAPVERRITRNVVSFANPTSTVNIDYWDQRLAEPVNAVSVLRAKLDAWLSEQCEEAGVMVMPGVKVDELVIEGGQVVGVRAGEDELRARIVIAADGVNSFIAQQAGIRPKEPKKSLAVGVKSVIALDPATIEQRFHCSGDEGTAYAVVGDCTQGVAGGGFLYTNKESISIGVVLRLDDLVAKGLASSDVHDHFLAHPAIAPLLEGGQLREYGCHLTIEDGPAMVAHELHRAGLMIVGDAAGFTLNTGLTIRGMDLAAGSALAAASAAHRALTDKDYSDESMARYERNLERDFVGQDMRTYVHMPELLDSPRMYGAYGEMIADVMHGMFNMDTRPRTHAIKVATRAFKKSSVRLGELVRDGITALKAL
>NZ_LT593929.1|WP_048733801.1|2190511_2190805_-|4Fe-4S-dicluster-domain-containing-protein
MIDYLASIPERLAHDAYETDEEESHIEVHQEEAKRTGAGKLFVQVCPAHVYSEEPDGTISVEYAACLECGTCLAVAPPGTLTWHYPRGGMGVVFREG
>NZ_LT593929.1|WP_013160179.1|2186801_2188574_-|DEAD/DEAH-box-helicase
MSTSAFDHFSPAYPGRAPWGTSNRLRAWQAAALEQYRDQAPRDFLAVATPGAGKTAFALRVAAELLSARVIQRITVVCPTEHLKTQWAEAAAKVGIQLDPGLGGSSRRGRSRQFHGTAVTYAGVAARVFHYRARTENFKTLVIFDEIHHAGDALSWGDAIAEAFEPATRRLALTGTPFRSDDTPIPFIRYERHNDGSLHSAPDFTYGYAQALRDQVVRPVLFMAYGGQMHWRTKMGDEVEADLAAPLTKDLSASAWRTALDPKGEWMSAVLGAADARLTQVRSHMPDAGGLVIASDQQLARAYAKILHQITGEPATLVLSDDAGSNERITEFSESQSRWMVAVRMVSEGVDVPRLAVGVYATSVSTPLFFAQAVGRFVRTRRRGETATVFLPTVPIILAHATLLERERDHVIGKPKNDEGDLWAPEEALIAQANAAEGASDDLLGSFEALGSHANFDHVLYDSQAYGLPAEATSQDEADYLGLPGLLEPDQVSALLKERQRKQLRRHDRADRRERVPEAQRLHKALESSRKQLNSLVSQYARSSGVPHSHVHAALRRACGGPELARCTTEQVDERTAMLRRWFMHPEARP
>NZ_LT593929.1|WP_048769340.1|2185877_2186504_-|YdcF-family-protein
MVVLACLVLTGSWALVHGAARDRVFTAHSAPNRDVALVLGAGLNADGSPSLYLAGRLRAAYDLYVSQKVKVILVSGDNRTVTYSEPGAMRSYLRLLGVPDRDVVADYAGLDTYDSCYRARNIFGVNSVTVVGQSYHLDRAVATCRSIGIDDTIGVSDEQSHDTSTWRTGEMREIPANVKFVWDRVTHRKPILGQRETSVTDALAEHDR
>NZ_LT593929.1|WP_097784425.1|2202851_2204294_+|trypsin-like-peptidase-domain-containing-protein
MSERNDQYDAHSAEGAGTGSTTPAGSGPAMQPPATQQSSAAQQGWQAPRETWDATWSPASLDDGSSTFNADPSAAAAFSNAAGNGGGYGGYPPAPNGANWGVYPPSNNHKGPNTRLAALLTALVVVLAMAVALVAPNWSGSGIGQLPVSTPSATQPAQANPSTSSQRAVAQSQTTASEAQSKGVVLITTQTTSGAAAGSGMVLSSDGYVLTNYHVVETSTRITATVASTNKQYTATVVGRDATNDVALLKLDGASGLDTVTIDSDTVNTGDQVTAVGNSSGQGYLSAATGQVVSTSSSITVQNETSASQTETLTNVYETSTQAVPGDSGGPMFDAENEVMGITTAGETQTNSRTGQSSTVSSYAIPIARAMSIVKQIESGQSSGTVQVGPKAYLGVTVQASQSGSVTISQVVSDGPAAAAGLSVGQVITAVDGTRIDSQATLSSVLAQHKPGDKVSVTVSSGYGGGTQTASLTLGTSPIN
>NZ_LT593929.1|WP_155488437.1|2204297_2205038_-|hypothetical-protein
MTLRRLIAPALVAPALAAAIILGGCAAQNPRGDASSSGASASVLTRLDLPAPGGTVDKASFVARCAGAQQTIKSYQTVMTTRTVTPQAGTQESTTTFQYDFTDAARPKVRSITSTGTETIYIGSDMWTRAAGAGWAHTTNSASAVVSGKGMDNYVGQVAGEIASVVYAGDEDVNQVRAHHFVFKPVVAPGSASPSVLAHDETGYWVDQDFRPVRVQTSVTTGGITSTTIMDSTQYGASFNIQAPAA
>NZ_LT593929.1|WP_097850898.1|2205195_2208591_+|PPi-type-phosphoenolpyruvate-carboxykinase
MSVVERRQINAAINLRLSLLGLPHPDSNAESPDAILVEPLLARQRELSRRLKDRLSAPDLRIQRFLDDYLADCDEHPQLPRTTLVLDEPGLARGLSLPVDGDEFHSDIVASYRLVNGVLHNPKHDRRTTAGVFHISTGGLPIPQDKVEVDKNVYARILARAFQAPDEELALPYTANLPEQAHCWASLLMRPTVLPAVPGRTTEKSYEVHFIVPGGLMCNLDFVEGIFGNAGDPYLPENDASLDPDSWTGHTGCVILAPHLTTMTKKSLGMPHYDDATERQRRDGQCWRHEDDLYNDGKAFKVCARDERGVIVTVIADNYFGYCKKEVKTQISYSANLLGGAEEEHSGGAEVYPAWNLNQDFTDRTPDDFTLADVISTNRELLDVRPEGYAVYKPEPNIVFIPEHSHYSMRTQTISWTAHGAEQTIKLLAGKHYLSPDGYRIHAKHREMDATQWHLIGTSSRAVTCHKPATVSGGGKSEISKSISDAFVFGNAFSHDIDSAMDQVQALFDTDFTNRFADASRNGTDHRPVLSIDRSLGSVIKLLTPSIQYNDEYNAFLEGIEPDVKELAFTVKRYYLPEWGEDWRSHFTVGIMNGRHGNMVRLDGKKIITNMLRVGFREDGSWRLFTLRPDYSPAVKVQTEDDITASTVTPPWEDAEGLPRKYVTNCEHLLFQRPDDAIHRGYDKQAEFDLASGTDTFISNFEPLTHEQARDLLTDVQAYSEFTKPVRKLIERVAAMPDDQSPEFWVCSDDPRHLPDGGRSKNPRYLQVRPTDSNPELTTVADVAGKLARKLPLAGHAPQPIDVVAAGRRNNPPEDKIPALCAYNPLHYMELPELFMEYISSMTGKSPSTTGAGSEGALTKGPFNALPAVYDLNAALLSYALTDYDGWLSSAGYIGPNARVDHDISMLIPELFSHMGPNDRNTKRLISEGYLEKMQDFDFDGHRVLASRLGYRINDRFVTHYFGRIFLHPDVVFSEEMLRPELQDEKIFADSIDVIVKTHQRVAQMYFDDGTVSLACPPIRALLEIMAHGASAEGWTLDSPEFRKLFERESVLASDWYAARLDAKQAEDVKQTEEGVERLKEYIERPDSGSVSARLHLADRLRELEAQLTYERSPEYRRSLVGTLGRQPRFV
>NZ_LT593929.1|WP_055346803.1|2208719_2209574_+|aldo/keto-reductase
MRHLQISGVSVPAIGIGTWHMGGSPARFDAECDALRAGIDASARVIDTAEMYGSGASESMVGTAIKGLDRSELFIITKVLPNNASRKQMEHSLDASLARLGTDYADLYLLHWRGEVPLEQTVEEMQRLWHSGKIKSWGVSNFDLADMEELAALPHGNHVAANEDLYNLSSRGIEFELIGWQRSLDIPLIAYSPLGASGGERGAREMRTSPAVNKVAEAHQVTPSQVLLAWVIRNGHTLAIPQTSNEDHMRDNIAAANLTLTDDDLTLLDQAFPPPRHKVPLDIL
>NZ_LT593929.1|WP_097850899.1|2209615_2210260_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MARILVIDNYDSFVYNLVQYLAQLGARVEVWRNDDARFATPGWANGFDGILLSPGPGTPEDAGVCVEVARTLGEQMPVFGVCLGLQAMAVAFGGRVVRAPEPRHGKMSMISHDGQGVFDGLPDPLEVTRYHSLAVEPGSVPDVLDVTATSLDDQVIMALRHRELPVESVQFHPESVMTSNGYQLLANWLAVCGDLGAPERAQGLSPLMTAVAGQ
>NZ_LT593929.1|WP_013160147.1|2210372_2211107_-|DUF881-domain-containing-protein
MADKKPGRGRKITRRMATVLVGALAGLLFVAAATTSHGSDLRPTRQQDMADLVAAQATHNSQARSTASALQSQVNELSNHDAEAAGVASASMASAEAAAGLTAVRGPVVQVTLTDAPLDENPAGVDPDMLVVHQQDIQQVVDALWAGGAEAMTIQGIRVISTTGVKCVGNTVILNGVPYSPPYVVAAIGDQQALEQSLAASRNVQIYKQYVLAYRLGYDQKRIADVTMPGYAGSVQLNQATPVR
>NZ_LT593929.1|WP_013160146.1|2211285_2211573_+|cell-division-protein-CrgA
MPESQSRKKAQQKKAAKNKQAAATKSAKNREAVNVSSRAWVPWVFVPMGLLGVIWLVVYYIGGQQIPLMYALSNWNFVIGLGLIAGSFFVATLWK
>NZ_LT593929.1|WP_097784428.1|2211888_2212923_+|DUF4862-family-protein
MPDYEQIIPRILTGAGTGDRRPSAAPAKARVVGAYLSQPLEQVKRPAYAHAVLQLPGVTGLEIPLCTTMARDDAKWLMDVLPPGARNIATLMGACDEAAADDPAFGLASTDPAGRNRALDLLQQARHSIARMTERGQHVLALEVHSSPTHRDNIDGTSQAFAASLAQAADWDWGETALVVEHCDAARSSGGASKGFLTLDEEIDAVETVRALSPRTPVMMSINWGRSAIDTRNAGGPLTQIDRLRRHGLLAGVILSGASDRASSYGAPWTDAQLPAAAPDGSGEASSLLTPQRAVEAMERAGDHLLFDGVTFAVMPQWTPSQERLRYVRGLLSVMPRGHLSVAF
>NZ_LT593929.1|WP_055346795.1|2213148_2214495_-|2-oxo-acid-dehydrogenase-subunit-E2
MPEYNMPDPGEGLTEADIVEWHVKVGDQVKVNDNLLDIETAKSLVELPSPFAGKVTRIYAEAGTTVAVGAPIVFIDDGTGPAPEHDGGAPAQGAEPGAQSSPAQASSAQSSSNQSGPAQSSAPAPAAQGPAKAAPAAARPDADEASAQRDLDGGMTGERLLSLDELPASKPTQQTVRQMLVGYGPADESTPSSTERRRRAHQVSRRGANERALRDEEIPVDTVRRLTARNVVHSRTSKVHTTAWVSTDVSGTMELVANLRKRREFKDLHVTALLVWCKAVCLAMRNNPMLNASWEDGSERIILHHDVNIGIAADTPRGLMVPVIKQAQNRDLLSMADELTRLVNLAKAGTLQPSDYRDGTFTITNVGGLGLDAGTPIINGSESAILAMGAITRQPWVVGQGDDEKIVPRWVTTLSISFDHRLIDGAIASRFLRDLAALVRDPAMAMAY
>NZ_LT593929.1|WP_013160143.1|2214505_2215480_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTTLTLAKGLNQGLHDAMDEDPQVLMMGEDIGKLGGVFRITEGLLDDFGADRVIDTPLAEAGIIGTAIGLALRGYRPVCEIQFDGFVYPGIDQIINQLARYRSRTHGRQSLPVVVRIPFGGGIGSPEHHSESPESHFVHTPGLHVVACSNPHDAYWMIRQSIACPDPVIFFEPKRRYYAKGEVDTSAPDLPLFSARIVRPGADLTLLTYGPMVQTCLDAARVASAEGRDVQVIDLRSLSPFDMATIRDALKRTRRAIVVHEAHRTLGPGAELAARLDEELWGELDAPVLRVTGYDTVYPPSRSEKGYLPDAERVLDAVDKSFDY

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Crispr_ID: NZ_LT593929_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT593929_4

2274443-2274554

Orphan

Consensus_repeat	Method
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT593929_4

>merge|NZ_LT593929|4|2274443-2274554|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCACCTGGCCAGAAACCTCTACCCCGAGCCCCTTGAGTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

>NZ_LT593929|4|4|2274443-2274554|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCAC	CTGGCCAGAAACCTCTACCCCGAGCCCCTTGA
GTGGTCACCTGTGCGGCGTCATTCCCGCACAACTGCCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT593929.1\|WP_048770095.1\|2264795_2265638_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_LT593929.1\|WP_055345736.1\|2266878_2267697_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_LT593929.1\|WP_013160067.1\|2285008_2286403_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_LT593929.1\|WP_097850902.1\|2268511_2269195_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181298
NZ_LT593929.1\|WP_055345737.1\|2265742_2266792_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|225333
NZ_LT593929.1\|WP_013160075.1\|2275391_2276363_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_LT593929.1\|WP_036943004.1\|2276536_2277961_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_LT593929.1\|WP_013160069.1\|2283006_2284128_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LT593929.1\|WP_055345944.1\|2269327_2270683_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_LT593929.1\|WP_041704379.1\|2284292_2284970_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT593929.1\|WP_048770099.1\|2261081_2262020_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_LT593929.1\|WP_048770097.1\|2262019_2264473_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|226957
NZ_LT593929.1\|WP_013160070.1\|2282297_2282945_+\|CueP-family-metal-binding-protein	unknown	unknown	unknown
NZ_LT593929.1\|WP_044635884.1\|2260040_2260727_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_LT593929.1\|WP_036942942.1\|2274704_2275142_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT593929.1\|WP_013160071.1\|2281439_2281937_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_LT593929.1\|WP_036943006.1\|2278615_2280142_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_LT593929.1\|WP_013160082.1\|2267795_2268515_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
NZ_LT593929.1\|WP_155487553.1\|2271667_2274256_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_LT593929.1\|WP_013160072.1\|2280525_2281272_+\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777

Protein	Function_ID	Function_description	E-value
NZ_LT593929.1\|WP_048770095.1\|2264795_2265638_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	2.17563e-116
NZ_LT593929.1\|WP_055345736.1\|2266878_2267697_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	1.24531e-60
NZ_LT593929.1\|WP_013160067.1\|2285008_2286403_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	9.67091e-94
NZ_LT593929.1\|WP_097850902.1\|2268511_2269195_-\|SDR-family-oxidoreductase	gnl\|CDD\|181298	PRK08219, PRK08219, SDR family oxidoreductase.	1.00184e-113
NZ_LT593929.1\|WP_055345737.1\|2265742_2266792_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|225333	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism].	2.30631e-33
NZ_LT593929.1\|WP_013160075.1\|2275391_2276363_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	7.73578e-158
NZ_LT593929.1\|WP_036943004.1\|2276536_2277961_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LT593929.1\|WP_013160069.1\|2283006_2284128_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.0088e-49
NZ_LT593929.1\|WP_055345944.1\|2269327_2270683_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	3.18818e-20
NZ_LT593929.1\|WP_041704379.1\|2284292_2284970_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.89837e-80
NZ_LT593929.1\|WP_048770099.1\|2261081_2262020_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.79199e-109
NZ_LT593929.1\|WP_048770097.1\|2262019_2264473_+\|FtsX-like-permease-family-protein	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	2.6351e-18
NZ_LT593929.1\|WP_044635884.1\|2260040_2260727_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.54509e-67
NZ_LT593929.1\|WP_013160071.1\|2281439_2281937_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	1.19326e-95
NZ_LT593929.1\|WP_036943006.1\|2278615_2280142_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.94337e-38
NZ_LT593929.1\|WP_013160082.1\|2267795_2268515_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	2.44995e-102
NZ_LT593929.1\|WP_155487553.1\|2271667_2274256_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	9.92111e-32
NZ_LT593929.1\|WP_013160072.1\|2280525_2281272_+\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	7.06066e-122

>NZ_LT593929.1|WP_155487553.1|2271667_2274256_+|LCP-family-protein
MADDDVQRPRRVRRAADDAHSATPPASGTPGTPRRIWARPQPEDPPTTPPAAPEPPAAPSTPADPTPTGGSSRRGMGTNEPHVSKWGTRESTPEPTASATPRRSWSRRRAESTGDQPPVGSGHPTGEGTGPRHARRSAPIHKPVESDLSHPDAPRSTAAADATTPSPAPAEQAPTRPAPPAAATPRGRQHDAPTPRASAPDKHVASRRTPATTPPAAATPHSAAPHSPAPHDPTPPSPTTHAPTPGTPTAPRSERGANLTLGGEPLGEHTAFLHAPDYRHANAAARAAARERARRAAAGTEPAAHDGELFDVEQVGLREPPPPPPEPEPASLRSRFAAFTERSDDTGSHGFGWTMLRTTLGSLIPGAGLIGTRLTMIGTLLFMMTVVFGSGVILAAVVHPPALMATVMNSVGLTAIGTMLVAVTIIWMAIVAGTYLVTRPRRMKRWQRIAGAIVVFLMAALVGSVSSVGAAYAFESAIVVSDVFGNSKTRSQTRPLGDWANKDRVNILLLGGDSGADRDEDLGLRTDTVMLASINTHTGNTVFIQLPRNLENVPFPAGSDLAKVYPNGRVWDRSSGTEDNYMLNAVWNEVPLEHPELFRNTDQPGADATKLAVSGITGLTVDYYAMINIDGIQALVDAMGGVVVNINFPIAKGGHVDGYGDEECGVDGNLSVGPDQKLDGADAMWYARSRCNDPDYDYGRMRRQSCLVNAIIRQANPQTMLTRYEAIAAAGKNMMSTDIPESLLDDATNLALQVKDAQVSRVVFSQAIGTAPQVGDINPGNPDYNAIRNRISGAITASDNGTTPSAPASASSSPMATGSAGSASSVASAAGSGSTSASAAGAAATPSGTAENMSGACDYHPN
>NZ_LT593929.1|WP_055345944.1|2269327_2270683_+|VanZ-family-protein
MEVWQNNAFVTVLVGGVAFLVLFLPYVVWSFHRFGQLSFRRIIGWAAVCVYFTGLAVYTLVPFPEDPQAFCASTHVGYNLHPLEFITDIRTQTAGMGLRSALTSAVVLQVVFNVVLFVPLGVLLHRYFRRGAITSTLIGLIMSVCIETTQYTGFFGLLPCAYRVADVDDVITNTAGTLIGALIAPLLLFWMPASRTLTSTRLVARPVTSMRRWVGMVVDGFLFYLIAASSSIAVLVAGRLLSWWPVEAEPEWISPAGDVVALLMVFVIPSLTGRGGSLGQRVVWLTPRWPAAADSGDGSGGSVGADSSGGTVGGGWPDDAAPDGGQMGGGTYRGGSLDSGSASSGLLDSRTLANGPLWRRLARSLVVVGPLVATRVLQLFIGEPVSGALNALSTLVIVLAVVMVVPTRSHRSLSGWLTGADMVDSRSVTPTVAGPGAGDTGVGGSGAADPT
>NZ_LT593929.1|WP_097850902.1|2268511_2269195_-|SDR-family-oxidoreductase
MAERRAVLITGATRGIGRAIADELADDWHVLVGGRHPDQVRKVVQALPSAEPFIADLTDAGAMQAAVEQIGHLDAVVHSAGAVVMGPVSELSRQDWRDLYEINVVAVADLTAELLPKLREAHGQVVTINSGSGFHTGPGQTCYAATKHALVAFTDGLREEERGVVRVTSVHPGRVDTDMQVDIQRQLGVQYQPERYLQPADVARAVELALTMRPGANVDTVSVRPAL
>NZ_LT593929.1|WP_013160082.1|2267795_2268515_-|glycerophosphodiester-phosphodiesterase
MTAVWAHRGASAAAPENTLPAFQAAATLGADGVELDVQRTRDGQLVVCHDETIDRTSNGVGNLADYTLSQLKEFDFSAGHPEFTNVAIPTLAEVFDVLGPTGLMINIELKNSVVPYEGMEAQVLALVHAAGWDDKVFYSSFNHRSMRRLAERDYPVGLLYDSVLWRAAKYAAELGASALHPSGRAVRVNPGVVRAAHKRGLSVNVWTIDKPAQIQALLDLEVDAIITNVPDVALGVRDA
>NZ_LT593929.1|WP_055345736.1|2266878_2267697_+|shikimate-dehydrogenase
MTHHAAVIGSPIAHSLSPVLHRAAYQQLGLHDWEYDAIEVTPDTLGEFIASRDNSWAGLSVTAPLKEALIEFGRPDQQSSELQSANTLIFGHPNRLFNTDVTGLRDAMASYDVIMPGTAVIMGAGATARSAISTLVRLGCRVIRVVARDAGRAHASLDRVAALYGTDLQIVDWSGFDALGADSADVLISTAPVQYTPEEAAQLAAVSQVVFDIVYQNYPTNLSRAAIKAGRVSVDGVDLLVHQAIDQVRLMTGEEPLAEPLIEVCRAELANR
>NZ_LT593929.1|WP_055345737.1|2265742_2266792_-|beta-propeller-fold-lactonase-family-protein
MSTQLCYVSGRRDGLITTVRFDDKAETAEVVSRLNLGPKPMPLELNRERRLLRVATGADPLRVSTLKLLPDGSCQVLSEVNCPLSATYLSFTPDDRMAFVVSYHASRLAWAPVWDNHLIDDSAWHVEQVGEQPHCVEPSPDGRHVYVVELGANRVQGFRVSDGELVADEQIGVQFEHGTGPRHLVFDASGEHGYLIEELGGHIVHLTRDPDSGRLTVAERVPYSDRADDLRPGVHVPSGSTPSLDDQTLRHWGAELALDPQRHWILASERRASTLNLQALNDDGSFGARLDHVPTEKQPRGMGLIGDHHVIAGAELGDTATIYRVDDQLEPVAEVEGLGGPVWFASIGS
>NZ_LT593929.1|WP_048770095.1|2264795_2265638_-|aldo/keto-reductase
MIIPTTPTPTVELSGGTRMPMLGMGTWPLKGEECRAAVASAIEQGYRLVDTAEAYGNEEAVGKAVREAGPDRAEIFVTTKFSKQWHSRKGVHEALEHSLERLGLDYVDLFLMHWPMPGEGSYVDAYRGMVELKEQGLAKAIGVSNFKVHHLDDLITEGMTPEVNQIQLDPSRPRLEVRDFLDNHDIVTEAWSPLGRGADGVLNAPAVLDAAKKHGITPAAAVLAWELNQGIVTIPKSANPEHQRTNLEAIGVELSAQEMKAIDALADPNAKVDDSDKTGN
>NZ_LT593929.1|WP_048770097.1|2262019_2264473_+|FtsX-like-permease-family-protein
MLRQPRQLISAGIAILLGVAFVAATFVFSASLNAGMTKLVAGMVGDAKVAVSPSDKVYTPVTPQQADTVSKVPGITRAKKIVQGSATLQVDGQDNRALISSQPDLSSETTLFEGTLAKGDGQVSISKSAADAYHLKLGDKVTLETFDNQTFDETVVGIINAGNDAVTQPLASWVFAPTEQAMAMASTNGYNLVLLYGNGDDTALRDAVQSAQGVSDAQLTVRTGQDEVKAAMKQMTGSTNSIQYVLLGFAAIALFVGIIVIANTFSILVAQRVRQLALLRCVGATRNQVFGMVFGEAALLGLVGSVAGILAGFGLAAALIPLASKGAQIPLAFSISPAAVIVPLVVGVLITLAASISPARKATRVAPLAAMRPELAVGKAKRLGIVRAIIGVLLVAGGAAMLAMGMVRAKPNSGMSGLVIAIGGGLLSFIGVLLVGRGLIPALARLIGTPLAKSSVSGDLAVGNTRRNPGRAAATANALLVGVTLITLLTVGASASQASLDRYLSATYPQDAVVSAVKSVDEQTLTRIKATDGVQDAALVPSTTADVSYGTTNTERKVDGVDNAAAHLTHFPQRYENLDDNTVRTSDTSLHDGETVTIKGTAGTTVQLTAKVSDDYAPTLIVSTTVLNKIDADAPDSAWVQYKAGANVNTVTTDLGKAIGNLGHSSIDSGAQARAQFGQMIDIVLAVAVGLLAVAVAIAVIGVANTLGLSVLERTQEIGLLRALGMTRRQVRAMISWEAVMIAVVAAALGLALGVTYGLIGAKTLLGSITSTPFVAGLPWVRLVIIGLIAVAAGWLASLIPASRANRISPSAALATE
>NZ_LT593929.1|WP_048770099.1|2261081_2262020_+|ABC-transporter-ATP-binding-protein
MTTMTQPTTAAVRTVHLTKIYGQGDTQVTALDDVSVEFIRGQFTAIMGPSGSGKSTLMHCAAGLDTPTSGQVFIGQVDATSLSDTNLTLLRRERVGFVFQAFNLLPTMTAEQNILLPLKLAHSKPDRQWLDTIVKVLGLQDRLSHRPAELSGGQQQRVAVARALITRPEVIFADEPTGALDSAASNELLDFLSRSVHELGQTIVMVTHDAHAAGFSDRVLRLADGRIVSDEPVNHPVAGQTPVPTTGFTAGAVAGATNYAPAPSTPPQMPTPQMPNPQMPPPQMPAPQAPAATPQRPDDANGTGLKRQAGDA
>NZ_LT593929.1|WP_044635884.1|2260040_2260727_+|response-regulator-transcription-factor
MPDEPIRLLLADDQEMVRVGFRMVLDSQPDMTVVAEAPNGRDAVDAVLRAAPGQAPDVALMDIRMPVLDGVAATSEIVAGSDTRVLILTTFDLDEYVYSALQAGASGFLLKDAGPTELLAAIRAVASGDSVVAPSATRRLLERFVPTLPTAQSGGDTKKRLEALTDREREVLTLVGQGLNNTEIAETLFLGGATVKTHIGHILAKLELRDRVHMVVFAYDAGLVHPRG
>NZ_LT593929.1|WP_036942942.1|2274704_2275142_-|hypothetical-protein
MSSYILRPRIPRRAFVLGSAATVVGLVLVVIGLVQNWAILAIIVLAALLAVGLLTLLMVAYSMVNHRIHIDLDAKGYRVHGPGMDRRGTWAKVTRVAVTPDGSRLMIASGPVKRTYISCPKGGDDPAMQALIKEISAHLPEHSRR
>NZ_LT593929.1|WP_013160075.1|2275391_2276363_+|NAD(P)H-quinone-oxidoreductase
MHAITVDEPGGVDVMSWAEVPIPDPGPGEVLVRTQAAGVNRGDVLQRQGHYPPPAGITDIMGMEALGVIEKLGDGVEGHQVGEQVLALVSGGAYAEFFVVPAGQLLKLPAGIDPLAAAGLVEVAATVVSNFDRVHLSAGETVLIHGGAGGIGTLAIQYAKALGAHVIVTAGSAKKLAYCRKLGADEGFDYHDDWEPQVMMATQDRGVDVILDIVGAKYLEANVRCLADDGRLVIIGMQKGTKGTLNIAVLLNKRGTVTATSLRFRSLASKAAICRRVEEAIWPLLSSGAIKPGNQTQVPMAHASKAHELLESGDNTGKIILVV
>NZ_LT593929.1|WP_036943004.1|2276536_2277961_+|argininosuccinate-synthase
MSKVLTSLPVGQRVGIAFSGGLDTSCAVAWMREKGAIPCTYTADIGQYDEPDIASVPGRAGQYGAELSRLVDCRESLVEEGLSALACGAFHVQSAGRAYFNTTPIGRAVTGTLLVRAMNDDNVSIWGDGSTYKGNDIERFYRYGLMANPSLRIYKPWLDEDFVSELGGRDEMSVWLQKRNLPYRDSKEKAYSTDANIWGATHEAKTLEHLDVSLETVEPIMGVKFWDPSVTIDTEDVTIGFEQGRPVTINGKKFDSAVDLVLEANKVGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLFIAYERLVNAIHNEDTIINYRNEGMRLGRLLYEGRWLDPQSLMIRESIQRWVASVVTGEVTLRLRRGEDYTIVNTDGPAFSYHPERLSMERVQDAAFGPLDRIGQLTMRNLDISDSRSRLEQYASQGQLTGGEAAKLVGALEPGKASEIADHPEHAGTSHATPLDNAAMETGAD
>NZ_LT593929.1|WP_036943006.1|2278615_2280142_-|LCP-family-protein
MALVLFVVVAAAGIYIWRANAGIKRSGAIADKTSQSSDLDLLVMGLDSRVDVNGNALPSDIYDALHSGDASDGGLNSNVLMYVHVPADGSQASVFAIPRDDYVDFPGCPDGVCKGKIKEAYGYAADAKTQELDKQGKTGQDAYQQARDAGRAAEVRTVEQFLGVEIDHFIEVTMVAFFQIAQVVQPITVCVNEKTVDTYSGADFKAGEQDINAEQAMAFVRQRRDTDNPDLAFTDLDRSRRQQAFIASLLVKLKKTNLLTNPGQLDKLVQVAQQNTVLDKNLKISQLTSLATSLEGSKLNFYTLPVESFGTADDGAAINVVDKAKIQGIVRSILHPGQSASPSASASASGSASYSPTYGMGATVSVMNESGVTGAAASLVGQLTGFGFTAGQATNGADILQESSVSYGSAVAGQAKQLAQQLGGLSANADSTLGANAVVVHMGTGFTGWPSASPSAASSAASTGGSSVSPSASSTAIPSAVDANSGGQSGPEPSQLTQISGGGIPCVK
>NZ_LT593929.1|WP_013160072.1|2280525_2281272_+|NAD-dependent-protein-deacylase
MSADQLSRILAPADHVVFFGGAGVSTESGIPDFRSATGLYKTQSGGEFPPEYMLSHSCWADHPEDFYAFYRKNMLHPEAKPNAAHYALARLEKAGRLTAVVTQNIDGLHQMAGSQKVFELHGSVLRNHCVDCHRSYPVEAIEQSTGIPRCTVCNGIIKPDVVLYEEGLDPDVMDGATRAIMAADVLIVGGTSLNVYPAAGLLEYYRGDKLVLINKSATPADNRAQLVIHDSIGKVLGQAVDEVLGDKA
>NZ_LT593929.1|WP_013160071.1|2281439_2281937_-|thiol-peroxidase
MSTTAFQGTPVHTVGELPAVGSQAPDFELVGKDLSTITLKSLRGRRVVLNIFPSLDTGVCATSVRTFNKLAAGLDNTTVLAVSKDLPFAAERFCVAEGIENVVPASAFRKHSFSNYGVLMTDGPLAGLLARSVVVIDENGTVVYNQLVPEIGNEPDYDDAVAALK
>NZ_LT593929.1|WP_013160070.1|2282297_2282945_+|CueP-family-metal-binding-protein
MSRRFATTLAASALSLVVLAGCSTATAGPSSGTPSGTVTAGAASNTSSTAANGSVDVAKAGVEELKGADARTLVDKLEATPLSQRRTDLRASVRADELQLSDTSGNKASVKMPADQFYLSFAPYVNKTHDCTYHSLTTCKAELGNKQMHVTITDAAGATVIDQDLTAADNGFIGVWLPRNITGTLTVSYDGKSASQQISTAKADDPTCLTTLHLA
>NZ_LT593929.1|WP_013160069.1|2283006_2284128_-|HAMP-domain-containing-histidine-kinase
MLTRRSIARRFLTGAAVVVGVAVVTIFVVDALVSPAIFHAHLMQADLSNPETVLRHVEEGMRSSNMIALAVAILIAVLAALLVSLYLATRVSASLAPLAAAARQVAAGDYTARVDAGPLGAEFDELTEAVNAMSQRLASVEQSRTRLFSDLAHEMRTPIAVVQAQLEGIEDGVVGVEDSIPVLRAQAERLTRLSSDIGLLSQAQEHALRYEFAPGEVASVVRGCVDDMALRYREAGVQLTLDVATHARAQLDTARFAQVITNLLANALNATVSAGRGRTGDRGGHVHVGVRRHGNEVAVQVRDDGVGISPEELPHVFDRFARVGPARDRSSGGFGIGLTVARAIMSAHHGRISADSPGPGRGATFTVTVPVLH
>NZ_LT593929.1|WP_041704379.1|2284292_2284970_-|response-regulator-transcription-factor
MIVEDEHSLATVMAGYFTRNGYRAEVVGDGLEAVAAARRLDPSVVILDLGLPSLDGVEVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRSAITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEAVWGVGWSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRMGQGR
>NZ_LT593929.1|WP_013160067.1|2285008_2286403_-|MBL-fold-metallo-hydrolase
MSKPVATLTFLGAARTVTGSKFLLDLNERRLMVDAGMFQGAREWRRRNWDDFPVDPATITDLLITHAHMDHSGYIPALVKHGFHGRIHCTPQTRELTAIVLRDSANLQVNEARDAARGGYSKHNPPLPLYDEADVERSLPLFHDVAFDRDLDLGGGVHARFTRAGHILGSASIRVWLADDPQISVLFSGDLGRDQHPVLRRREEPEGATSVLIESTYGNREHPTGDEEDHEALAGLIRRTIARGGSVLIPAFAVDRTEILIKVLGEMQHAGRIPPVPIFINSPMGSAALDVYQGTGAHAELRADIDISALLNLPTLRDVRTKEESVALNRPAQPCIIISASGMATGGRVVHHLRHMLPDPRNAVVFTGYQALGTRGRSLVEGAKQIKMYGRYVPVKAEVLLDTAFSVHADAPELLEWLAALSPAPQVVYCVHGEPKSAEHLADTISEELGLMAVVPRYGEVVRL

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Crispr_ID: NZ_LT593929_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT593929_5

2374283-2374390

Orphan

Consensus_repeat	Method
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT593929_5

>merge|NZ_LT593929|5|2374283-2374390|CRISPRCasFinder
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGCTCAAGGAGCGGCGTGGAGCCCGCCTTCGCTCCAGACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC

>NZ_LT593929|5|5|2374283-2374390|CRISPRCasFinder
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC	TCAAGGAGCGGCGTGGAGCCCGCCTTCGCTCCAG
ACCTCGTTCCCGTGCTGGTGCCGGCGCTGTTGGTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT593929.1\|WP_013162146.1\|2387122_2388157_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_LT593929.1\|WP_055346569.1\|2382518_2383484_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_LT593929.1\|WP_013162147.1\|2388401_2389340_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_LT593929.1\|WP_157763653.1\|2373526_2374216_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223673
NZ_LT593929.1\|WP_155487516.1\|2363546_2364617_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_LT593929.1\|WP_157761610.1\|2380483_2380795_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|376852
NZ_LT593929.1\|WP_044636463.1\|2368176_2369733_-\|xylulose-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_LT593929.1\|WP_044657724.1\|2386107_2386974_+\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_LT593929.1\|WP_055346233.1\|2377659_2379678_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224926
NZ_LT593929.1\|WP_055345839.1\|2362287_2363547_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340951
NZ_LT593929.1\|WP_013160004.1\|2367071_2368124_-\|glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223318
NZ_LT593929.1\|WP_044658124.1\|2366205_2366982_-\|DeoR/GlpR-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_LT593929.1\|WP_055343840.1\|2384877_2385888_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|275173
NZ_LT593929.1\|WP_044658120.1\|2383852_2384806_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|275172
NZ_LT593929.1\|WP_055344271.1\|2372216_2373218_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_LT593929.1\|WP_155489321.1\|2370161_2370341_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237489
NZ_LT593929.1\|WP_155641109.1\|2370474_2371593_-\|anaerobic-sulfatase-maturase	unknown	unknown	gnl\|CDD\|188457
NZ_LT593929.1\|WP_060763078.1\|2380804_2382157_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LT593929.1\|WP_044636913.1\|2389596_2390364_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176505
NZ_LT593929.1\|WP_157763651.1\|2365011_2366013_+\|IS481-like-element-ISPfr17-family-transposase	unknown	unknown	gnl\|CDD\|372671

Protein	Function_ID	Function_description	E-value
NZ_LT593929.1\|WP_013162146.1\|2387122_2388157_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.55527e-77
NZ_LT593929.1\|WP_055346569.1\|2382518_2383484_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	4.93681e-05
NZ_LT593929.1\|WP_013162147.1\|2388401_2389340_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	8.00668e-43
NZ_LT593929.1\|WP_157763653.1\|2373526_2374216_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	1.58087e-39
NZ_LT593929.1\|WP_155487516.1\|2363546_2364617_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	1.01596e-15
NZ_LT593929.1\|WP_157761610.1\|2380483_2380795_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	0.000121236
NZ_LT593929.1\|WP_044636463.1\|2368176_2369733_-\|xylulose-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	4.1608e-163
NZ_LT593929.1\|WP_044657724.1\|2386107_2386974_+\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	4.72756e-39
NZ_LT593929.1\|WP_055346233.1\|2377659_2379678_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224926	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_LT593929.1\|WP_055345839.1\|2362287_2363547_-\|MFS-transporter	gnl\|CDD\|340951	cd17393, MFS_MosC_like, Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters. The gene encoding Sinorhizobium meliloti membrane protein MosC is part of the mos locus, which encodes the biosynthesis of the rhizopine 3-O-methyl-scyllo-inosamine. MosC belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.54871e-64
NZ_LT593929.1\|WP_013160004.1\|2367071_2368124_-\|glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	1.52992e-60
NZ_LT593929.1\|WP_044658124.1\|2366205_2366982_-\|DeoR/GlpR-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.55306e-67
NZ_LT593929.1\|WP_055343840.1\|2384877_2385888_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	1.70229e-52
NZ_LT593929.1\|WP_044658120.1\|2383852_2384806_+\|TIM-barrel-protein	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	4.37525e-44
NZ_LT593929.1\|WP_055344271.1\|2372216_2373218_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	4.37618e-35
NZ_LT593929.1\|WP_155489321.1\|2370161_2370341_-\|hypothetical-protein	gnl\|CDD\|237489	PRK13745, PRK13745, anaerobic sulfatase-maturation protein.	1.07826e-07
NZ_LT593929.1\|WP_155641109.1\|2370474_2371593_-\|anaerobic-sulfatase-maturase	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	3.65294e-160
NZ_LT593929.1\|WP_060763078.1\|2380804_2382157_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.69299e-53
NZ_LT593929.1\|WP_044636913.1\|2389596_2390364_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176505	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI), and glycerophosphoserine (GPS), can only be hydrolyzed by UgpQ during transport at the inner side of the cytoplasmic membrane to alcohols and G3P, which is a source of phosphate. In contrast to Ca2+-dependent periplasmic phosphodiesterase GlpQ, cytosolic phosphodiesterase UgpQ requires divalent cations, such as Mg2+, Co2+, or Mn2+, for its enzyme activity.	8.19281e-88
NZ_LT593929.1\|WP_157763651.1\|2365011_2366013_+\|IS481-like-element-ISPfr17-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	3.87771e-22

>NZ_LT593929.1|WP_157763653.1|2373526_2374216_+|ABC-transporter-permease-subunit
MGLRILNPEIVPGVGATLAELVRLVGLPGFYVTLGQTLLSAGVGLVLALVIAVPVGLALASSAWLRRLLNATIDALRPIPPIVLLPLAILAIGGGLGFKVTLVLQGALWPLLLQTSYGLRAVDPLQTDVAASFRIDPLRRLFLFRIPAAAPVIFSGLRLAASTAFGVSVMTELVGGERGLGSILAIAQSGNNVPRVYAITIITGLVGLAIAFFFGRLERLLLPWQEATR
>NZ_LT593929.1|WP_055344271.1|2372216_2373218_+|ABC-transporter-substrate-binding-protein
MHKKRLFHIPLALFSALLLVLTSACSASTDDGSGTRANAGASASTQLQTVKIGAVPTLILGFLQVGEQQGYFAKQGLKLDITPADSGPNIISSLAAGQYDLAYTAYAPALVAVAGGQDLRLVDHLDNVSAAGHNAGLLVKSDSPITRWKDLEGKKIGANAPRSQLVLWIQAAIKADGGDPGTLQIVPLPLNQIADNVAQGKLDAGSVTEPYLTQAHNSPALRDLGDPATAGFSQGTPSGGVFTSEKTLQAKSDVITKYRAAFAQTIDYANGHVDEVRAQGAKLVGLSDAAAKTITIDPISTDVKAQDFGPFVKALTELGWTKTDVDIERFLSR
>NZ_LT593929.1|WP_155641109.1|2370474_2371593_-|anaerobic-sulfatase-maturase
MDSPSIGPGGAPAPVRGPLRAQRGSRGVRPAPHVMAKPAGPTCNMECTYCFYLDKQALFPRSSLRMTPEVVRAVLQDAIDASPDTAIQFCWQGGEPTLRGLDFYREAFAVARRIVPPGRHFAWSMQTNGVLIDERWAEFLARHDVLVGLSIDGPRDVHDRWRVDRGGRGTWAKVMRAARLLHEHGVRFNTFTTVHPANQHRGAEVYRFLRDEVGSDFHQYIPIVVPDPARPGHVVRGLSVDPGAWGEFQVDVFSQWLHRDVGQVFVMNVEWALAAWCGDEPASCMFREHCGDAVVVEHDGSVYSCDHFVDPAHRLGRVGDDSLAAMVADPRQRTFGDAKADLPARCRECPVLFACHGECPKNRLMGGGPVDG
>NZ_LT593929.1|WP_155489321.1|2370161_2370341_-|hypothetical-protein
MAGPADGPKVNYLCRGYRHFFTAIDAPMRYLAACVLSGRDPARVMPWARQYRILVSPGT
>NZ_LT593929.1|WP_044636463.1|2368176_2369733_-|xylulose-kinase
MSERQRTQQGPLVVAIDSSTTSTKAIVVDTNGTVWATARRPIPLLTPAMDHYEHDPALWWRTSHETIGEVLGGLSQADRDRVAAIGITHQRESFAPFSADGTPLANGILWLDGRAAEQIERHGSAHVHELSGKPAGVTPAIYKMAWVTQHHPEWFARADKVTDVLGAIVFNLTGRWASSTAAADSLGLFDIQRRDWSDELLQIAGVRRDQMPELVAPASPIADIRPELAAEWGLARPIPVIAGLGDGQAAGIGAAAVDPGVGYLNMGTAVNAGVESGSYIYNPAFRTHVSGIPGNYVLEVLQSSGSYLAGWVRDTFGDPDHPGDPDVERDNAAAAAIAPGADGLVTLPYWNAVQSPYWDALARGAVVGWRGTHTRAHLYRSVLESICFEMRRNLDELADGTGTPITQLRIMGGGARSGVWRQIMADVTGVPLTVCLEEEISALGAAVLAMAAINAHAEPLADGSPDVASSAKAMASFGETVHPDMELHERYRRIAAVHARLYPALRETFQELAALSQD
>NZ_LT593929.1|WP_013160004.1|2367071_2368124_-|glycerol-3-phosphate-dehydrogenase
MPTITVLGAGAMGSALCRPLADAGWDVRLWGTWLDDHLLDAVEAGKPHPRTNVPLAPGVATFRSAQLEQALDGTQVVVMSVASVGVPRVAELALPGIAKADALWMTSKGFSEADDGRIGLLPEAIRSIAAAKGVALPPLVAIAGPVKANECAQALPTATIFGCRDREVSRSYAAQAATANYAIAHTDDETGVEVCAPMKNVYAIALGVADGLEEKTGVPHHNLKAAAFAQAIAEMSLLGAQLGADPATAYGLPGVGDLEVTGLSGRNKVYGVRLGRGEQPQEALAEMDRLEQTVEGVPATALAVRFVEQIGGGLAERMPLLAAVNRLLNDAGVDPMTEVARAVLPVKPTL
>NZ_LT593929.1|WP_044658124.1|2366205_2366982_-|DeoR/GlpR-transcriptional-regulator
MEQQPATSRDVRIHDVLQVVTREGTIAVKELADELGVSPMTVYRDVAALETSGLIQRSHGRVTAAPFSMAEASSLMRMGTELDAKQRIADAALPLLAPGSTIAMDDSTTCRHLFPGLGELAPLTVVTNARFIADAVRDSAELELITLGGSYLRWADAYAGPMTEAMIDQVSPDVCIMSTTAVTGGVCSHPDEAMAAVKGRLMRAARQRILLVDRTKFSRNALHRFLPLSEVDVVITEKSLDPAHLATLRDQVERVITV
>NZ_LT593929.1|WP_157763651.1|2365011_2366013_+|IS481-like-element-ISPfr17-family-transposase
MTHANAPLTPEGRRRLAVLVVEQGWSLRRAAERFQCSPATVKRWADRYRAGLPLIDRSSRPTSSPNRLSRKTEHRIVALRFTRRWGPHRIAYHLRLHRSTVGRVLARYKMPKLINIDQATGLPVRRPKPTRYEVAAPGQLVHVDIKKQGRIPDGGGWRAHGRGSMQDRHAGVARDKAARAGAAGSRGYRYLHHAVDDHSRIAYSEILDDERKETAAGFWTRANAFFAGLGVTVTAVMTDNGSCYRSGAFADALGDEVKHKWTRPYRPQTNGKVERFNRTLAVEWAYAKPYASEAERAAAYETWLHHYNHHRPHTGIGGQTPSARVHNVTGKYN
>NZ_LT593929.1|WP_155487516.1|2363546_2364617_-|DNA-3-methyladenine-glycosylase-2-family-protein
MTSSPRATGRPASSPPAPGAEGQPMAGARSGAAGSPAQRTVLGAAGRLDMALGRLAKGPADPTHRRVGAQHWWRATRTPDGPALLELFDHHADVVTRAWGEGADWALDQVPRLLGEQDDPSGFAALAADCDLLRRAHHDHPQWRIGATDNLTEALAPAVIEQKVTGPEAFGGLRSLLAKYATPAPGPAATPDGPAHGMVVPPTAEQWAHIPSFEFTRAGVDGRRAAALVRAMRRVPSLERALGRATDGAERSRLLQTQPGIGPWTAAKVLQWAYGDPDAWSVGDYHAPALISLALTGQKGDDAFADEALAPYAGHRYRVELLVTPLVAHAARRGARRTLPSHVPGVGVNRRRSWRR
>NZ_LT593929.1|WP_055345839.1|2362287_2363547_-|MFS-transporter
MASGMESPETAHETAHGASHKAGRVPTRLRLARLGVLLIFFVNGATFASLVPRYPEIIERLHVSNTLWGLALGIGPIGGIALGWLAAPLMRRYRSRNVAALAQIASSGALVILALAGSIEWVFVAMFAMSAFDAVTDTSMNYHGLRVQRLYRRSIFNSFHGWWCIGAVVGGFLGSAAAGAAMAVPTQTYVTVGVLLCCVVASWAMMLPGEDREQVAGTEVATGRAWLRPRTLAVLVGLGLLGALAGGIELGGSAWSPLYMTDQFAATPFVAGLGFVALMVFETLGRLTGDVLVDRLGLVRTVVWGAVVCLAGMALALAVPTPVTALIGFGASGWGIATMIPNAMNAADGLPGVPAGVGLTITTWVMRVGFVLFPIVIGALGDAVSLRLALLVIPLSAVLIMALSPLLRPRPAPQAAATG
>NZ_LT593929.1|WP_055346233.1|2377659_2379678_+|MBL-fold-metallo-hydrolase
MTEIDIHTHTALSDAEAVVRHADGGLDDATKPATGFTRQLNAGVAERLGIDLDDASNSEYEVARAHLVRPADTLEILDDQGRQVWNVRKFDFLKDPQVPATVNPSLWVHAKSDRLAGLFEVVPDTIYQVRGFDISNLTLVKSKTGWIVLDVLTTTETARAALKFAEEGLNADIANNIRAILISHSHADHFGGIEGIIASERIGRTEDGLVPIYAPAGFLEEAVSENVYAGTAMSRRSDYQFGTAAAARAHQGSLPGLSQITPKGTVNLPRPTHVIEHDQTIVLDGVEVFFQLTPGTEAPAEMNNYFPQFRALWLADNTLATLHNLYPIRGAQVRDAKAWVNYILDLVHRFGAQATVAFQAHEWPHENTAEQPNAVREYLLNTAAVYKYIHDQTLHLANQGYTADEIGRRIEVPDQLLKHWYIRPYYGSVEINAHAVYNRYLGYFNGNPINLFPLAEEQFARKFVEYGGSADQVLQRAQADFDAGDYQWAAYAANQVVFTDPDNQRARYLAADALEQLGYQSEPSIWRNAYLQGAEELRHGVDSSQQLIGNKGALLSHVSVESVLDYLAISLDGQKAASDDFELELTVEHPDTGQDAESYLLYLRGGALLYHRIEGSDGTRPHATLLRSQLGALIAGRPVPVGIERDAHDLLGRLQGYLVNLAASSRFNIIEP
>NZ_LT593929.1|WP_157761610.1|2380483_2380795_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MPVTVRNITTREFRDNLSEQLSRAAYSGDRIQILRNGQPIAMVVSMDDAEELRELDYYKDAADYRRAVAERNGDPLAMPTRNDVIVADGASARNDLARRLGFE
>NZ_LT593929.1|WP_060763078.1|2380804_2382157_-|MFS-transporter
MELNWTTRLVVAAVLLAAAFTGLLNQTLMVTAMPMMMHDFGISLSLAQWLTTGNVLVVGVVTPVSAMLYERFSTRALFLWSTGLFIAASVLGFVADNFWPVLAARLLQAVASGIIMSFAQIALLRITSPRRMGTVLGLYMMVVSAGPAIGPVMSGVILEYLSWHALFGAGVLMMAVVFAAAVFTLPNIKAARKIAIDWPSFVLSFVGMGLFLAGISTVQEAPLVGVSMMVAGLLFVAWFARRQWSSAQPLLNLRLLKGATFRRMTVGVMLAFGVFLGTETIIPVLLESHAGRSGFATALVMLPGAVSNVIASPLTGRVFDARGLRTIWAWGSGITVVSAVALLAVSPASAPWAIAGAYLLRVVGTSVMSALPTARALKGLTGEDISHASALLNSLRQVAGALSNTVLVWAVAVVPDFTDGFRLAMAITAAATVVMVVVFARQARLDRAGA
>NZ_LT593929.1|WP_055346569.1|2382518_2383484_-|sulfite-exporter-TauE/SafE-family-protein
MDMELAAVIAVAVIVGIDKSLLPGAGTLAIGILANVIPARQASGLSLALIIVADWCAIWAYRKDVDWGVLRRLLPNVVVGIGVGAVFLALADDTATGCTIGVILLVFIIWNLLAMARKRRRAALGGGLAGYGVSGAATAGSVPAEPPAVSSPGDRGAAASAGGDGELAGDGGAAGGGESQPAGFVSARSGGTSSEGWWARTRARFSWRGFGFGGLTGFTTMVANAGGPVTTMYFLAEGLSVTAFLGTTAWFFLVVNLIKLPISLSLGMLQTSSLPLVAAMVPVILATVLFGRWLAHRINPSFFRTVVVALTFVAAIALVIS
>NZ_LT593929.1|WP_044658120.1|2383852_2384806_+|TIM-barrel-protein
MTQTTTPATQKARNTNDPKYSKLAIGVCPDQWGVWFPDDPKQMAPRQAMQEMAEAGFEILETGPYGYFPTDPKELKSWTDEFGLKVVAGTGWGILHKAEAWAETERHFRQIAETHAAVGAEYIVHLPPLYRDDKTWEFTDDRVLSPEAWHLYVDNANKLGQIMLDDYGLKMVLHPHGDSHIETPDEIARIFDATDPRYVNLCLDSGHVVYGGGDPVELVHKYPERITYVHIKAFDPKITKEAHDKDWPFGEAVTKGASVRPPAGLPEMHAFIDALAELDKDIYCICEQDCYPCPPDFPKPNAIKMRDYLAECGLGLK
>NZ_LT593929.1|WP_055343840.1|2384877_2385888_+|Gfo/Idh/MocA-family-oxidoreductase
MTVRIGLIGAGGMGRAHVERIQNELAGGEVVAVADVNPDAAGYAESIGARYFPTGPELIADPGVDAVIIATFGKVHAPDVIAAIRAGKPVLCEKPLATTAQDCLDILAAEQEAGRKLVTVGFMRRFDKGYNEMRAQLTEGQHGYATMVHCRHRNPSVPATLYTTRNMIDDTAIHEIDICRFLLDEEITTVRVDTPRRSSNAPQGLQDPLVLVANTASGVRIDDEINVNIKFGYAIECELVMESGTVRLADQDHTILRDIEGDRHAICRSHIDRFHDAFNAEVQQWIRAVERGEHAGSTSWDGYAATCVVDAAIESLEHQGREVAVQMIDQPAFYAG
>NZ_LT593929.1|WP_044657724.1|2386107_2386974_+|sugar-phosphate-isomerase/epimerase
MVDIALDPNMYYASMSTAQTLFKAAELGFDYVELSPNTEFHFWHRYPKADDDFVAGLNKAQKDSGVTVRTLNPVFNWSSTDEQERAAQVRNWRRLLELADQINVREIVSEFSGNPNTPVRCEEQWYKSIFELAPDFEKYGITLSMEAHPYDFVERHDDAYSIVRGTNLDWIGYEFCCPHTFHLDDGVGDVERMITSCAPKLREVHVADTLNHRANDGNRYIINPPGVDARVHQHSEIGKGEVPFDKVFETLRAVGFDGVLSLCVFGFHEQADEINRRMLERVRSEFGA
>NZ_LT593929.1|WP_013162146.1|2387122_2388157_+|LacI-family-DNA-binding-transcriptional-regulator
MAGGSRPTQADVARLAGVSRQTVSLVVLDDPRVSPRSRAAVTSAMAQLNYRPNVAARALVSHHTGFLGIVFSDLANPFHAELAEALRAAADRLGFVPFISPVGQSADEEKVAINRFTEMAVDGLILVSPLSDNTTLEALGAQVPTVIVTRNSGPANVDLVHADDRASAAQVTQHLLAAGYDPVVFLGYERRIEGDSSLARIDGYRAAMRRAARPEQVQIVTQGGVPQIVGGLAASLTRGFGLVCHNDLIALEAWAALAELGLEPGPDVGVAGFDDTGMARFPGVGLTSVNNGTTGFADTAVEMISQRLAGRTARREVVLPTHLIVRRSTLRDQPDRPPRPAQQR
>NZ_LT593929.1|WP_013162147.1|2388401_2389340_+|alpha/beta-fold-hydrolase
MAIQEVTFPSSNGRDTIYGWIYEPTQPARGVVQIVHGLGEHSRRYLHMITALLDAGFVVAADDHAGHGKTSTESGVWGDTGENGVTTVISDEYSLHKLVRDDHPDLPFFMFGHSWGSMIARGFASAHGATLSGLALCGVAAQIDGVETKLDRVGLDAALAAGPGTASGEEFVGQIFEDFVSRYTDVRTPNDWIALDPDVVADHARDPFNNYYKPMSLRFVHDFVTLYDQVNAPDWYTSIRADLPVLVLAGDQDPVANYGEGAYHVANQLEASGHRDVRTHVYTGYRHEVHNEPQTRADVESELTVFIDGHLQ
>NZ_LT593929.1|WP_044636913.1|2389596_2390364_+|glycerophosphodiester-phosphodiesterase
MAATRATQHVPTFNSTIFAHRGLPSRAPENTLAAFDLAADEGATWIETDVDIIADGTPIIIHDTALDRTTDHRGKLYDIATAEELAGIDAGSWFAPEFASERVITLDALVDLLNRRKLNANIEIKANEQGAERTIVLVDAIASSLARLDPEREIIISSFSQPVLMTFHARHPEYAIGVLYETAALYDDWLSVLELCGASYIHPEDAGLTRERVQAFRDAGYGVNVWTVDARDRANELLNWGATGVFTNIADQLIR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT593929_1	1.1\|1595220\|35\|NZ_LT593929\|CRISPRCasFinder	1595220-1595254	35	NC_041890	Propionibacterium phage Anatole, complete genome	9859-9893	0	1.0
NZ_LT593929_1	1.1\|1595220\|35\|NZ_LT593929\|CRISPRCasFinder	1595220-1595254	35	KX620752	Propionibacterium phage E1, complete genome	9859-9893	0	1.0
NZ_LT593929_4	4.1\|2274483\|32\|NZ_LT593929\|CRISPRCasFinder	2274483-2274514	32	NZ_KU254577	Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence	93743-93774	8	0.75
NZ_LT593929_4	4.1\|2274483\|32\|NZ_LT593929\|CRISPRCasFinder	2274483-2274514	32	CP031732	Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence	144379-144410	8	0.75
NZ_LT593929_4	4.1\|2274483\|32\|NZ_LT593929\|CRISPRCasFinder	2274483-2274514	32	NZ_AP015031	Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence	216038-216069	8	0.75
NZ_LT593929_5	5.1\|2374320\|34\|NZ_LT593929\|CRISPRCasFinder	2374320-2374353	34	CP000663	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence	104107-104140	10	0.706
NZ_LT593929_5	5.1\|2374320\|34\|NZ_LT593929\|CRISPRCasFinder	2374320-2374353	34	NZ_CP031752	Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence	50213-50246	10	0.706

1. spacer 1.1|1595220|35|NZ_LT593929|CRISPRCasFinder matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 0, identity: 1.0

gttgaagcaggccgacactgctgggcaggtccgtg	CRISPR spacer
gttgaagcaggccgacactgctgggcaggtccgtg	Protospacer
***********************************

2. spacer 1.1|1595220|35|NZ_LT593929|CRISPRCasFinder matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 0, identity: 1.0

gttgaagcaggccgacactgctgggcaggtccgtg	CRISPR spacer
gttgaagcaggccgacactgctgggcaggtccgtg	Protospacer
***********************************

3. spacer 4.1|2274483|32|NZ_LT593929|CRISPRCasFinder matches to NZ_KU254577 (Pseudomonas aeruginosa strain HN39 plasmid pHN39-SIM, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

4. spacer 4.1|2274483|32|NZ_LT593929|CRISPRCasFinder matches to CP031732 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

5. spacer 4.1|2274483|32|NZ_LT593929|CRISPRCasFinder matches to NZ_AP015031 (Pseudomonas putida strain KF715 plasmid pKF715B, complete sequence) position: , mismatch: 8, identity: 0.75

ctggccagaaacctctaccccgagccccttga	CRISPR spacer
atccccagaaaccgctaccccgtgcccgcgga	Protospacer
 *  ********* ******** **** . **

6. spacer 5.1|2374320|34|NZ_LT593929|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

7. spacer 5.1|2374320|34|NZ_LT593929|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1589837 : 1651532

Tupanvirus(13.33%)

transposase,tRNA,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_097850831.1\|1589837_1591109_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_055346153.1\|1591105_1591501_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	5.0e-30	49.6
WP_097850947.1\|1591660_1593166_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_112317735.1\|1593301_1593892_+	DoxX family protein	NA	NA	NA	NA
WP_013160742.1\|1593927_1594722_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_055346964.1\|1594985_1595255_+	hypothetical protein	NA	NA	NA	NA
WP_157763636.1\|1595266_1595851_+	thioredoxin domain-containing protein	NA	NA	NA	NA
WP_055344004.1\|1595940_1598568_+\|tRNA	valine--tRNA ligase	A0A2K9KZB8	Tupanvirus	5.3e-160	36.3
WP_157763637.1\|1598674_1599424_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_013160738.1\|1599508_1600630_-	6-phosphofructokinase	NA	NA	NA	NA
WP_097850834.1\|1600708_1602151_-	threonine synthase	NA	NA	NA	NA
WP_036939438.1\|1602269_1602584_+	hypothetical protein	NA	NA	NA	NA
WP_013160735.1\|1602695_1603973_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.4e-136	59.2
WP_162484287.1\|1604094_1604730_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A248SJ97	Salicola_phage	1.2e-28	38.7
WP_162467436.1\|1604807_1605419_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	9.8e-41	45.6
WP_157763638.1\|1605529_1606762_-	AI-2E family transporter	NA	NA	NA	NA
WP_013160731.1\|1606994_1608188_-	AI-2E family transporter	NA	NA	NA	NA
WP_013160730.1\|1608412_1609996_-	trigger factor	NA	NA	NA	NA
WP_044636081.1\|1610730_1611045_-	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_013160728.1\|1611156_1611405_-	hypothetical protein	NA	NA	NA	NA
WP_157761975.1\|1611598_1613152_+	hypothetical protein	NA	NA	NA	NA
WP_044658233.1\|1613148_1615443_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	2.3e-103	36.9
WP_013160723.1\|1615519_1616314_-	hypothetical protein	NA	NA	NA	NA
WP_013160722.1\|1616538_1617153_-	DSBA oxidoreductase	NA	NA	NA	NA
WP_060759167.1\|1617495_1620099_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	7.9e-47	30.8
WP_013160720.1\|1620299_1621757_+	NADP-dependent phosphogluconate dehydrogenase	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	2.4e-37	28.4
WP_013160719.1\|1621886_1622708_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_013160718.1\|1622854_1623736_-	thioesterase family protein	NA	NA	NA	NA
WP_060759166.1\|1623741_1625631_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	5.0e-43	24.2
WP_013160716.1\|1625807_1626266_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_097807335.1\|1626271_1629100_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_097850836.1\|1629220_1631257_-	M3 family metallopeptidase	NA	NA	NA	NA
WP_013160713.1\|1631313_1632684_+	DUF4921 family protein	NA	NA	NA	NA
WP_057374794.1\|1632670_1634191_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_013160711.1\|1634203_1634833_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_036939459.1\|1634832_1635828_-	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_013160709.1\|1635999_1637688_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	7.9e-48	28.8
WP_051733919.1\|1637884_1638385_-	single-stranded DNA-binding protein	A0A1J0MC80	Streptomyces_phage	4.6e-12	39.3
WP_060761374.1\|1638601_1639264_-	hypothetical protein	NA	NA	NA	NA
WP_055346971.1\|1639260_1640904_-	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_097850837.1\|1640900_1642748_-	ABC transporter	NA	NA	NA	NA
WP_157763639.1\|1642817_1644320_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_055345485.1\|1644559_1645825_+	MFS transporter	NA	NA	NA	NA
WP_013160702.1\|1645845_1646517_+	oligoribonuclease	M4M9I5	Vibrio_phage	3.1e-19	35.2
WP_048768850.1\|1647254_1647761_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A060QNR4	Streptococcus_phage	4.8e-17	43.4
WP_097850839.1\|1647835_1650175_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	3.6e-115	32.2
WP_055346664.1\|1650224_1651532_-\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.1e-182	71.7

DBSCAN-SWA_2

2290580 : 2344651

Staphylococcus_phage(18.18%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013160063.1\|2290580_2291855_-\|tRNA	serine--tRNA ligase	A0A2K9L088	Tupanvirus	2.8e-66	35.8
WP_172952388.1\|2292002_2293607_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA
WP_044657875.1\|2294895_2295510_+	hypothetical protein	NA	NA	NA	NA
WP_157763647.1\|2295801_2296755_-	aminotransferase class IV	NA	NA	NA	NA
WP_155490387.1\|2296747_2298481_-	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	6.8e-63	36.2
WP_055346172.1\|2298718_2299708_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_055346171.1\|2299908_2301096_+	ABC transporter permease	NA	NA	NA	NA
WP_097850905.1\|2301092_2302910_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-14	28.1
WP_048770080.1\|2302963_2304532_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.3e-105	43.2
WP_060759344.1\|2304528_2305194_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_172952389.1\|2305190_2305781_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_097850906.1\|2305777_2308816_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_097850958.1\|2309330_2310425_+	DNA polymerase III subunit epsilon	NA	NA	NA	NA
WP_080970649.1\|2310539_2311493_-	macro domain-containing protein	A0A0K1L687	Scale_drop_disease_virus	1.2e-21	44.6
WP_048770075.1\|2313520_2314327_-	hypothetical protein	NA	NA	NA	NA
WP_055346843.1\|2314504_2316040_-	gluconokinase	NA	NA	NA	NA
WP_013160037.1\|2316331_2317195_-	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA
WP_044658304.1\|2317187_2317913_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_172952078.1\|2318287_2320462_-	protein kinase	A0A1M7XTW9	Cedratvirus	6.9e-12	26.9
WP_048770067.1\|2320773_2321382_-	LysM peptidoglycan-binding domain-containing protein	A0A1J0GVU2	Streptomyces_phage	4.7e-27	44.1
WP_013160041.1\|2321592_2322897_-	citrate synthase	NA	NA	NA	NA
WP_013160042.1\|2323416_2324220_+	EcsC family protein	NA	NA	NA	NA
WP_055346839.1\|2324330_2325164_-	SdpI family protein	NA	NA	NA	NA
WP_157763598.1\|2325378_2326983_-	S8 family serine peptidase	NA	NA	NA	NA
WP_013160045.1\|2327004_2328153_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.6e-31	29.8
WP_080516175.1\|2328325_2329285_-	phosphopantothenoylcysteine decarboxylase	Q9HH70	Methanothermobacter_phage	1.4e-25	39.4
WP_013160047.1\|2329922_2330267_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157763648.1\|2330269_2331013_-	hypothetical protein	NA	NA	NA	NA
WP_013160195.1\|2331040_2332348_+\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-169	68.1
WP_063493589.1\|2332384_2332693_+\|transposase	transposase	NA	NA	NA	NA
WP_157761608.1\|2332715_2332943_+\|transposase	transposase	NA	NA	NA	NA
WP_080713571.1\|2332961_2333906_-	hypothetical protein	NA	NA	NA	NA
WP_013160195.1\|2334209_2335517_+\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-169	68.1
WP_138428099.1\|2338846_2339335_+	hypothetical protein	NA	NA	NA	NA
WP_044635816.1\|2339685_2340720_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_097850907.1\|2340935_2341994_+	triacylglycerol lipase	NA	NA	NA	NA
WP_097850908.1\|2342330_2343089_-	ATP-binding protein	NA	NA	NA	NA
WP_097850909.1\|2343085_2344651_-\|transposase	IS21 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT593929

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection