CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT907988	Orrella dioscoreae isolate Orrdi1 chromosome I	5 crisprs	csa3,cas3,DEDDh,DinG,PD-DExK	2	3	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT907988_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT907988_1

624974-625051

Orphan

Consensus_repeat	Method
GTTCCAGGCGGGGCGGCGGTTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT907988_1

>merge|NZ_LT907988|1|624974-625051|CRISPRCasFinder
GTTCCAGGCGGGGCGGCGGTTCGAAGGGGGGCACGGGTTGCCAGTGGGGCGGCAGTTCCAGGCGGGGCGGCGGTTCCA

>NZ_LT907988|1|1|624974-625051|CRISPRCasFinder
GTTCCAGGCGGGGCGGCGGTTCGA	AGGGGGGCACGGGTTGCCAGTGGGGCGGCA
GTTCCAGGCGGGGCGGCGGTTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT907988.1\|WP_067753852.1\|612494_614408_-\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_LT907988.1\|WP_067753882.1\|627945_628401_-\|CesT-family-type-III-secretion-system-chaperone	unknown	unknown	gnl\|CDD\|341103
NZ_LT907988.1\|WP_067753880.1\|627352_627898_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_LT907988.1\|WP_067753888.1\|630434_631397_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237171
NZ_LT907988.1\|WP_067753980.1\|617654_618302_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LT907988.1\|WP_067753884.1\|628716_628959_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067753891.1\|631393_631657_-\|flagellar-biosynthetic-protein-FliQ	unknown	unknown	gnl\|CDD\|227131
NZ_LT907988.1\|WP_067753858.1\|616971_617658_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_LT907988.1\|WP_067753897.1\|632313_633450_-\|FliM/FliN-family-flagellar-motor-switch-protein	unknown	unknown	gnl\|CDD\|274196
NZ_LT907988.1\|WP_067753886.1\|629010_630336_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_LT907988.1\|WP_157929705.1\|628432_628606_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067753977.1\|614808_615450_+\|preprotein-translocase-subunit-SecD	unknown	unknown	gnl\|CDD\|235615
NZ_LT907988.1\|WP_173719624.1\|618304_619078_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_LT907988.1\|WP_067753871.1\|622657_624232_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
NZ_LT907988.1\|WP_067753868.1\|620529_622521_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223039
NZ_LT907988.1\|WP_067753894.1\|631663_632317_-\|type-III-secretion-system-export-apparatus-subunit-SctR	unknown	unknown	gnl\|CDD\|237210
NZ_LT907988.1\|WP_082985314.1\|619274_620360_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_LT907988.1\|WP_067753877.1\|625580_627299_+\|type-III-secretion-system-outer-membrane-ring-subunit-SctC	unknown	unknown	gnl\|CDD\|274174
NZ_LT907988.1\|WP_067753850.1\|611391_612366_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_LT907988.1\|WP_067753855.1\|615538_616975_-\|amidase	unknown	unknown	gnl\|CDD\|223232

Protein	Function_ID	Function_description	E-value
NZ_LT907988.1\|WP_067753852.1\|612494_614408_-\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_LT907988.1\|WP_067753882.1\|627945_628401_-\|CesT-family-type-III-secretion-system-chaperone	gnl\|CDD\|341103	cd17020, T3SC_IA_ShcM-like, Class IA type III secretion system chaperone protein, similar to Pseudomonas syringae chaperone protein ShcM. This family includes type III secretion system (T3SS) chaperone proteins similar to Pseudomonas syringae ShcM and similar proteins. In P. syringae, which is a plant pathogen that can infect a wide range of species, the T3SS allows injection of the effector protein HopPtoM (previously known as CEL ORF3), among known plant pathogen effectors, that makes a major contribution to the elicitation of lesion symptoms but not growth in host tomato leaves. Chaperone ShcM is required for efficient translocation and function of HopPtoM in the plant cell, consistent with the presence of customized chaperones in plant pathogenic bacteria.	6.15056e-22
NZ_LT907988.1\|WP_067753880.1\|627352_627898_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00146653
NZ_LT907988.1\|WP_067753888.1\|630434_631397_-\|hypothetical-protein	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0.000490854
NZ_LT907988.1\|WP_067753980.1\|617654_618302_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.67043e-53
NZ_LT907988.1\|WP_067753886.1\|629010_630336_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.13251e-07
NZ_LT907988.1\|WP_067753891.1\|631393_631657_-\|flagellar-biosynthetic-protein-FliQ	gnl\|CDD\|227131	COG4794, EscS, Type III secretory pathway, component EscS [Intracellular trafficking and secretion].	5.25093e-13
NZ_LT907988.1\|WP_067753858.1\|616971_617658_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	5.18415e-69
NZ_LT907988.1\|WP_067753897.1\|632313_633450_-\|FliM/FliN-family-flagellar-motor-switch-protein	gnl\|CDD\|274196	TIGR02551, translocation_protein_Q, type III secretion system apparatus protein YscQ/HrcQ. Genes in this family are found in type III secretion operons. The gene (YscQ) in Yersinia is essential for YOPs secretion, while SpaO in Shigella is involved in the Surface Presentation of Antigens apparatus found on the virulence plasmid, and HrcQ is involved in the Harpin secretory system in organisms like Pseudomonas syringae. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.03464e-15
NZ_LT907988.1\|WP_067753977.1\|614808_615450_+\|preprotein-translocase-subunit-SecD	gnl\|CDD\|235615	PRK05812, secD, preprotein translocase subunit SecD; Reviewed.	4.30268e-12
NZ_LT907988.1\|WP_173719624.1\|618304_619078_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	5.08612e-133
NZ_LT907988.1\|WP_067753871.1\|622657_624232_-\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	4.1598e-97
NZ_LT907988.1\|WP_067753868.1\|620529_622521_+\|hypothetical-protein	gnl\|CDD\|223039	PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.	0.000911202
NZ_LT907988.1\|WP_067753894.1\|631663_632317_-\|type-III-secretion-system-export-apparatus-subunit-SctR	gnl\|CDD\|237210	PRK12797, PRK12797, type III secretion system protein YscR; Provisional.	1.07806e-100
NZ_LT907988.1\|WP_082985314.1\|619274_620360_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	3.28588e-81
NZ_LT907988.1\|WP_067753877.1\|625580_627299_+\|type-III-secretion-system-outer-membrane-ring-subunit-SctC	gnl\|CDD\|274174	TIGR02516, type_III_yscC, type III secretion outer membrane pore, YscC/HrcC family. A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.34087e-135
NZ_LT907988.1\|WP_067753850.1\|611391_612366_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	4.21355e-131
NZ_LT907988.1\|WP_067753855.1\|615538_616975_-\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	1.61404e-135

>NZ_LT907988.1|WP_067753871.1|622657_624232_-|alanine-racemase
MVPSPSVGSSSTPQPAIASSSAAPPPPPPVVASAPSSSQHLGLLKGRAAKGAQPNRPLGKPLPVAESAGTSKPPVFARANLARAKFWAKDSPIYAKIMTALNEPRIEASFAATLEVNLGNIRKNYRKGADKLGAHVEAAAVIKADAYGLGATTVAKALMQEGCRTFFVARTTEAIKLRSELRDEDHPLADTVKIHVLDGLLAHVEPRVLVEYDISPVLNSPAQAKRWSDHAANSPTGKLPCILQFDTGMNRAGMTEAEAETMIAQLSGTAGPDAAGSLEQERYAGLEVTHIMTHLAKAGEAAPRPGEGNDATRQAGETSQAQLARFETLCQHFPQAKHSIGASSTVFLEPAFHKDMVRMGGTFHGQAPFEADTNPLLPTITLVTSLSKIHQLKAGEGTGYGLRFTAHQDMPVATIPLGYADGLPRRAHGNAPADAGQPEAFVLVEGRYRAPFVGATSMDMSTIDLSAVPKAFHHEGARVTVIGPHEASGQGITPDHFGDSEGTNASELQTKITSRVRKTYTDQA
>NZ_LT907988.1|WP_067753868.1|620529_622521_+|hypothetical-protein
MPTPNISSSSTPDLHAVAPQPAERNTAGSVHSAPTPRRSNASLPVGRPPSPTRPASSASSHARSASSSTEPPADEREVAGIHSNLSSIFKPLDASLEKADIEPEQVEDAARKIEAATTASLADVLDIAARTPLPEGGEEAISEFIEGSSRGSTPVRSPSRESVREEHAPEPGPQTPAAHGSGSVSGKRKSRTPPRSVHSAEIQVHEAPRSDSPPPALRLSGEGVARAISGEAPPMHAPLAIRAPRAASSDSLSIRAVPGQQEGMHIVAAVIQDAAESPDFPPAHGDTEAVGRFKRAASLLTAVLRKVGANEEFTHSASKVGASVANVAVRNAAGVLLPTILRQFIGHGVQAAFEATNASSNVRTMVGVGMPAAAVASQALGWMRDRSHGTQTSTSVRSRAIMGLGTLAVGVAGAMTGGTSTAAANMVAFTAYTAWRDLFSNCLLRFVNPAMAEHTTQGYAMDAKHFAIISVLYGIDQALVNRGMTEFASPSGPAAALAGTAAGTVIANAVTRGVINWVGECAEDLMFQSIPAVRSWLNQNAEQGRESHPLQLGLTVEAESAHLKNAAMGPWAVRTGILSMTLGMVAMAERSDVLANNPELSKAVADIIIGATNCVLYEPFANAGSAQPGPRTEDDESLALTVPEVDIPLSQRDPQTIPSTHQA
>NZ_LT907988.1|WP_082985314.1|619274_620360_+|helix-turn-helix-domain-containing-protein
MAGTADRPATLTSRQLVDQLDRSALPARRALHAVDGVELRIGILLWPGFPLLSLAGLCDGLRHAADVGDQSRQNRCSWAVLGVPGEGVPASCGVRVPVDQPFDDVTEFDYLAVIGGLLGRDADVDRRYVSYLRQADARGVPLIGICTGSFVLAELGLLEGHTPCIHPFHVEDWKARHPVVPYETRAHYAFSPGRITCPGGISIVELVAELVHLHCGADRAAKVVHQMTVDADHSATHVARRHALGYEPSDHKTLRQAIVLMEKNIATPLEIAVIARLVKTSSRQLERVFLNETGASPSEYYRRTRLRFARWLLVSSDLPVSAIAHEAGFSDASHFIRHFQQLYGLPPGRLRKALSSEAARA
>NZ_LT907988.1|WP_173719624.1|618304_619078_-|amino-acid-ABC-transporter-ATP-binding-protein
MLRVQRLRKQYGDTEVLKDISFTLKRGETLALIGPSGSGKSTCLRCINFLEQPNGGDIWLEDELIGRVRNGARERVMSDKELAPQRREIGMVFQLFYLWPHLTVRDNVALASIKAGGLTRSQAYELAEQMLGKVHMLHKADQYPEKLSGGQQQRVAIARALAQRPKLILFDEPTSALDPELVGEVLGVIKELADEGRSMILVTHEIRFARDVADRVIFMEGGLIVEEGPAQDVINRPAQERTRAFLGQVHADGGIAA
>NZ_LT907988.1|WP_067753980.1|617654_618302_-|amino-acid-ABC-transporter-permease
MQHLPTIFATLLDGAWIAAQIALGAALLAFVLGLALALLDVFVPLRALRLVIAAFIEWMRNVPALAHLFILYFGLASVGIRFSPITAAVLGLGLVGAAVLCEVFSAGMRALHIGQREAALAVGLTPMQTLRHILLPQMLKLTLPAVTNYVAQLIKDTSIASAIAAPEIMFWARNLVTSTFQTPLIYASAIVLYAMIVLPVSWLLGRLERRLGVGQ
>NZ_LT907988.1|WP_067753858.1|616971_617658_-|amino-acid-ABC-transporter-permease
MMEFLASYGEYWSEWFPRLLEAGRVTLALSALGFGLALVTGSLLAMLSRSPCKPLRLVAAAIVEFLRAVPLLALLLALYFGLPAFGLTLSGFWASVIGLGIQGGAYVAEILRGGLDSVHRGQREAALAAGLTPRQVFAYIILPQMLRVILPPMVNCYVTLLKDSSLCALIATPELMLAARAMSSEYFLPLQIFVLVGLCYFVIAFPLSVLSRQLSKRLSRGRRSLGTP
>NZ_LT907988.1|WP_067753855.1|615538_616975_-|amidase
MNPQAENRIPSLSDAAAAIAAGKLTSTALVTQQLARIDAMDRKLHAYVDVYRDEALAVAASLDAMQEAGIRLGPLHGVTVAIKDLFDIAGKPIGAGSLARPPRRSALTATVVDRLRAAGAVVLGKTQTVEFAFGGWGTNAVMGTPWNPWDLETHRIPGGSSSGSSVAVAAGMACGALGTDTGGSVRIPAGLCGLVGLKTTGGLVSRHGLIQLCPTHDTVGPIAHRVRDVALLLDVIAGPDPQDAASVHSPVRSVSGQLDGDVSGTRVWILPESERQDIEPAVLAAYDGVLETLARLGMCLVERALPQSLSESMRIAGALMSAEGFAHLGDLFEQDLVFDPHVKRRILAGRDIPAAQYIGLLRLREQARLAMLAAMEPVDVCVMPTNAITAISVAEVDESMTTLSRFGRFVNLLDLCSVAVPAGFSHEGLPISVQFVGRPWHEPQVLRIARAFEDATRWYQVMPQGLEEAFVTNRPAAA
>NZ_LT907988.1|WP_067753977.1|614808_615450_+|preprotein-translocase-subunit-SecD
MHTHKRYLAPVAAALVLVLAGCQTASDKSAGAAGAPATPGQAQPAPAAKPGSPATPAAQAAASAAQVGFYIAQTKQEAGLLEVPLQDGKLYVQRTPVLTRGDLVEAAAMVDQQGQNFVGLRFNDAGARKLSEISSKNVGNMLALVINRELVAAPRISEPLDRGVLAFGTPNAQAAAEIAAAIRGDDPAAEPAPSGATQPGAAPAPTVPAQSGS
>NZ_LT907988.1|WP_067753852.1|612494_614408_-|phosphomethylpyrimidine-synthase-ThiC
MNANPKFLAATAEVDSAAVAPLPQSRKIYQQGSRPDLRVPFREISQDDTPTMFGGESNPPLTVYDTSGPYTDPSVQIDIRRGLPALRQAWIDERGDTELLAGPTSDYGKERLLDPKLTAMRFDLQRPPRRAKAGANVSQMHYARRGIVTPEMEYVAIRESLRREQYIETLRASGPDGEKLARRLLRQHPGQSFGAAIPGEITPEFVRDEIARGRAIIPANINHPEIEPMIIGRNFLVKINANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVDGKAEELTWEIFRDTLIEQAEQGVDYFTIHAGVRLPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEEICEIMKAYDVSFSLGDGLRPGSAWDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMDLQLEHCHEAPFYTLGPLTTDIAPGYDHITSGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGIITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWEDQFNLGLDPDTAKEFHDETLPKDSMKVAHFCSMCGPHFCSMKITQDVREYAQQQGLSANDALAKGMQEKSVEFVKKGAAIYHQQ
>NZ_LT907988.1|WP_067753850.1|611391_612366_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MSVKRFIAPLFAAGALAVAMPACAQAQYPDRPIRLVVPWAPGGATDVIARIVGKRLGEQLGQPIVVENKGGAGGNIGTAAFVREKADGYALLMTTSSTNAINTHLYSQTGYDAAKDFAHVAFVGSIPNVLEVPAKSPFKTARELLDYARANPGKLDYGTAGVGSSQHLAAAQLVHSAGIEITHIPYKGSGLAVADLLGEKIDFMLDTGSLSQVKGGALRALAVASGERLSVLPDVPTFDEVGLKGMHAAAWYGLAARAGTPPEIVARLNKEVNAILQEPAIRKQLEEMGVQVGPLRDPAALDAFVLKEIERFKALVEMSGARLD
>NZ_LT907988.1|WP_067753877.1|625580_627299_+|type-III-secretion-system-outer-membrane-ring-subunit-SctC
MNIVKRLIFLALLVCSLGAHAAPVRWVSNRVDYTTNGQDVKEVLRDLAASQGITARISKDVSGTVRGEFHMPPQRFLETLASTFGFVWYYDGSILHVVPPDDVKSTLVRLNHATMRDLRDVLTSTGVLDTRFRITYDSRQKTVIVTGPQAYVSLVQSVAERLDEEARHRSGTVIRVYPLKHAWAMDRTVALGGSSVFLPGVAKVLSGMFHPDEGGGKTIPRGDAMGDISNLRPMNNAVGMPGNGPLPGLAGNMPNSVLGGLAGTPSPALENIAGARGTAPPLPGGSQDLPVIRPDQRTNSVLVRDTPDRMYQYAELIERLDVKPRLIEIEAHIIDIEEGALRQLGVDWRIHSSRFDFQTGTGGAQNAFDGRVAPNFGTVILPGGGAVAAAPVGASISAVVGDAGRYIMTRISALQQDNRASIQASPKVTTLDNLEARMDNNQQFFVRVAGFAASNLFTVTTGVSLNVLPMVVQDTERVQVKMDVVIQDGRITGQSVDNIPVITSTNITTSAFINEGQSLLIAGYKVNQTEEGETGVPFLSHIPLIGALFRHKTNTSAQRERLFLLTPRVINL
>NZ_LT907988.1|WP_067753880.1|627352_627898_-|hypothetical-protein
MRSRITSPNTAQAAGQEDPAGRPDALASRPGADRPVPADGALAPLKAKPAPKAQQAEPNTERRVSLPAVPGRLPLAPPPSAILASSRPAATAQARLDALEPALVQLLGSTNGHASHLAERLEVLTRLVEKGVSQVELGDVLDRTDAILESAIEFERAEIIDKAQCRDITDYVTALRQKAEE
>NZ_LT907988.1|WP_067753882.1|627945_628401_-|CesT-family-type-III-secretion-system-chaperone
MDIGQFEAVLRDLAECVDLPSPDPLLKTRALDIEGFEVRFEYFEADPAAMYVNFHYGTVTAGRTLALFRLMLEANLLIYAQDQAQLGLDSDTGGTVLILRLGLTHELSGEVLVETMEHYAEHGRYWRKNIIEASDEMFAGIVSGDYKWLKA
>NZ_LT907988.1|WP_157929705.1|628432_628606_-|hypothetical-protein
MAAAAGAATGAAGGIMSAMIPAMTAMAEMQVTMSLTQAVLDIAKTGASDAERSAQKT
>NZ_LT907988.1|WP_067753884.1|628716_628959_-|hypothetical-protein
MFDDIQSASRAMQASAHYDAPGLASQIAAIDQALAASAEKVDDALRATDDAARRQALRTVYRGLQASRRGASRLADLAQS
>NZ_LT907988.1|WP_067753886.1|629010_630336_-|hypothetical-protein
MKRLRVLTGIHAGVSVVLGVGRVRVGRDSQSDILISDWTEADVMLIVPQEGPVLAHAVSDAGDAGDAADSLALPPAGDDPARPLPDYAAQRHGEVVFCIGPDDEPWPPDVTLLQALYGAGPASARRTPSRWRTPALVGVGALACGLAAVCALLLMSETGHALAVPPAQDAKARQLLATRLQAEFDHQGWTDLHVRTQAGRLQVHGYVPNLAADARVRDVLRTLGATEAERRYRDAGGDAQALRQMLAQHDIKVSYTGEGRFHLAGKVASLPAFEDALTRARGELGNPEVRITTDITQKPDRAPALAYVNVFATDNLRVARTPDGTRHVFSATSPAETAGQPDAPASPSLGTPASPPPAAPAAAATPAIHVLSPDADIPPAVAAATAAQAAAPPRQAEARPAAAPAAAKPTRRKARATYVPPRPPFPEDGRYVGLPSMSGAP
>NZ_LT907988.1|WP_067753888.1|630434_631397_-|hypothetical-protein
MSRRIAAGQAAASFAPEHAQLRQTQGRRTQLRLLARRRQAMRLHDDLLIRDAQHGIPHATVADDRRTRRRELLARLSARRAQAAGAGDTQAPPPVPSAAPSEPGATPPETPRPQDLAAWRDAPPPAADTGGRAPLAVGERNARQQAGHQDDADERREGAGAEPATGAGRRRTIAVGRARAAAPLRQAGDLQQFLWAHHRDALTALPMMADAWARALLHAIDSAGASRSCVDAALACQEDLLAAWARHGERLEVKQGALLQAFLPALRDHAPAPDGGAGRPYALLPLLMISGLRPRTPTQLRETRTRVRNQRLARLPPKER
>NZ_LT907988.1|WP_067753891.1|631393_631657_-|flagellar-biosynthetic-protein-FliQ
MEVENLISITTEGLLLCLYVSLPVVLVSAVTGLLVAFVQGITAMQEAMLAHLIKLLVVTVTIALGAAAGGIAILRFAENLLMRVVPS
>NZ_LT907988.1|WP_067753894.1|631663_632317_-|type-III-secretion-system-export-apparatus-subunit-SctR
MTQLGDLTGLMLAVIAISLLPFVAMVVTSYAKIVVVLGLLRNAMGVQQVPPNMVLNGIAILVSIYVMAPIGSKAMEVLQQNNGRETNPTQLTIDVLGAAREPFREFLIKHTPQREKQFFLHAARSVWPEDMAAKLNENDLIVLAPSFTLSEMTDAFRIGFVLYIAFLVVDLVIANILLAMGLNQVQPVNVAIPFKLLLFVLMDGWSTLMHGLVMTYR
>NZ_LT907988.1|WP_067753897.1|632313_633450_-|FliM/FliN-family-flagellar-motor-switch-protein
MVAHATDTSRPEAPAAGGPPAWSPLAGSLPRHAPDDARLLKLTHDRRLAALLRTLPALENTRLELSSPAPGARPRVWVLLGHANDAGWLGLDDATMPALSSLATPRRQGDADAHAALGRAIASQLLSPLLAFLRTLGLPALDVLAVSGTAPALPACTLWRLALRQGEGRPLEAWFPTPPAGWLDAVAERIAACRGPTGLETSRLCLPAWLVLGRQAQRIRTLSALRSGDILLHVIDPEPARDIAAHAPFNATLRWVGAATPRTRRFLQAAVRVDGAQLTLQEAPRMTQELNEDLPDPDASDSAVPLDEVELPLQIEVAAMALAAADVAALQPGQVLTLPATVRDARVRLTVFGQQVATGELVCVGDHLGVRIRATERP

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Crispr_ID: NZ_LT907988_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT907988_2

1311640-1311791

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCGAGCGGGGATGAGCCG	PILER-CR
GTGTTCCCCGCGCGAGCGGGGATGA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LT907988_2

>merge|NZ_LT907988|2|1311640-1311791|PILER-CR,CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGATGAGCCGCGGTCGCGCAAGACGGCGGGAAGCGAAAGGAAGTGTTCCCCGCGCGAGCGGGGATGAACCGACGCCTTCGTTGCCTTCGGTGAATAGGTCGCGCGTGTTCCCCGCGCGAGCGGGGATGAGCCG

>NZ_LT907988|2|1|1311640-1311791|PILER-CR
GTGTTCCCCGCGCGAGCGGGGATGAGCCG	CGGTCGCGCAAGACGGCGGGAAGCGAAAGGAA
GTGTTCCCCGCGCGAGCGGGGATGAACCG	ACGCCTTCGTTGCCTTCGGTGAATAGGTCGCGC
GTGTTCCCCGCGCGAGCGGGGATGAGCCG

>NZ_LT907988|2|2|1311640-1311787|CRISPRCasFinder
GTGTTCCCCGCGCGAGCGGGGATGA	GCCGCGGTCGCGCAAGACGGCGGGAAGCGAAAGGAA
GTGTTCCCCGCGCGAGCGGGGATGA	ACCGACGCCTTCGTTGCCTTCGGTGAATAGGTCGCGC
GTGTTCCCCGCGCGAGCGGGGATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT907988.1\|WP_067757039.1\|1309585_1310311_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_074046833.1\|1317373_1317637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067757051.1\|1315517_1315874_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_162292289.1\|1313789_1315118_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LT907988.1\|WP_067757042.1\|1310342_1311560_+\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235994
NZ_LT907988.1\|WP_067750341.1\|1304451_1304988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_157929725.1\|1317080_1317230_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_098020852.1\|1308035_1309390_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_LT907988.1\|WP_157929724.1\|1312556_1313330_+\|DUF3865-domain-containing-protein	unknown	unknown	gnl\|CDD\|289732
NZ_LT907988.1\|WP_067750337.1\|1305807_1307964_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_LT907988.1\|WP_173719715.1\|1301008_1302073_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_LT907988.1\|WP_067757054.1\|1315989_1316385_+\|DUF1090-domain-containing-protein	unknown	unknown	gnl\|CDD\|368932
NZ_LT907988.1\|WP_067750342.1\|1303857_1304379_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067757060.1\|1319189_1319396_-\|DUF4224-domain-containing-protein	unknown	unknown	gnl\|CDD\|379410
NZ_LT907988.1\|WP_067757065.1\|1318158_1318905_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271181
NZ_LT907988.1\|WP_067750344.1\|1303005_1303773_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|224104
NZ_LT907988.1\|WP_067750339.1\|1305268_1305538_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_LT907988.1\|WP_067750346.1\|1302314_1302998_+\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|235400
NZ_LT907988.1\|WP_067757062.1\|1319419_1319653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_082985424.1\|1316438_1316969_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|379205

Protein	Function_ID	Function_description	E-value
NZ_LT907988.1\|WP_067757042.1\|1310342_1311560_+\|threonine-ammonia-lyase	gnl\|CDD\|235994	PRK07334, PRK07334, threonine dehydratase; Provisional.	0
NZ_LT907988.1\|WP_098020852.1\|1308035_1309390_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.7064e-49
NZ_LT907988.1\|WP_157929724.1\|1312556_1313330_+\|DUF3865-domain-containing-protein	gnl\|CDD\|289732	pfam12981, DUF3865, Domain of Unknown Function with PDB structure (DUF3865). Family based of Structure 3B5P encoded by ZP_00108531 from nitrogen-fixing cyanobacterium Nostoc punctiforme pcc 73102 is a CADD-like protein of unknown function. Superposition between protein structures encoded by CT610 from Chlamydia trachomatis (Structure 1rwc), pyrroloquinolinquinone synthase C (PqqC, Structure 1otv) and ZP_00108531 revealed that putative active sites in CT610 and ZP_00108531 are identical.	1.61097e-07
NZ_LT907988.1\|WP_067750337.1\|1305807_1307964_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_LT907988.1\|WP_173719715.1\|1301008_1302073_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_LT907988.1\|WP_067757054.1\|1315989_1316385_+\|DUF1090-domain-containing-protein	gnl\|CDD\|368932	pfam06476, DUF1090, Protein of unknown function (DUF1090). This family consists of several bacterial proteins of unknown function and is known as YqjC in E. coli.	3.20413e-23
NZ_LT907988.1\|WP_067757060.1\|1319189_1319396_-\|DUF4224-domain-containing-protein	gnl\|CDD\|379410	pfam13986, DUF4224, Domain of unknown function (DUF4224). This presumed domain is functionally uncharacterized. This domain family is found in bacteria and viruses, and is approximately 50 amino acids in length. The protein is likely to be of phage origin and is found as protein Gp02 in the Xylella phage Xfas53.	3.47441e-06
NZ_LT907988.1\|WP_067757065.1\|1318158_1318905_-\|hypothetical-protein	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	3.08833e-12
NZ_LT907988.1\|WP_067750346.1\|1302314_1302998_+\|phosphatidylserine-decarboxylase	gnl\|CDD\|235400	PRK05305, PRK05305, phosphatidylserine decarboxylase family protein.	8.62556e-115
NZ_LT907988.1\|WP_067750339.1\|1305268_1305538_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.44079e-52
NZ_LT907988.1\|WP_162292289.1\|1313789_1315118_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.24213e-40
NZ_LT907988.1\|WP_082985424.1\|1316438_1316969_+\|PIN-domain-containing-protein	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	3.16577e-10
NZ_LT907988.1\|WP_067750344.1\|1303005_1303773_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|224104	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism].	1.41561e-65

>NZ_LT907988.1|WP_067757042.1|1310342_1311560_+|threonine-ammonia-lyase
MIELADVQAARARLAGQVLNSPFSHSRTLSDILHAEVWLKFENLQFTASFKERGALNRMLALSEAERRQGVLAVSAGNHAQGVAYHAQRMGVPAVIVMPRFTPTVKVANTRRFGAEVALAGDSFDDAKTHGLSLAESRGLTLIHPFDDDAVIAGQGTVALEMLEARPDLDVIIVPVGGGGLIGGIATAAKALKPGIEIVGVQTERYPAMHADRHGGSPEPGQYTIAEGIAVKAPGELTKALVRQRVDRIELVTESDIEHAIVMLLEIEKTVVEGAGAVGLATLLHAHEQGNERYRGKRIALVLSGGNIDPLMLGELIERGMVRAGRLARIRVDLRDLPGALARATSIIAEAQANVAEVHHQRAFTLLPVQTVEVDFVIQARGHDHVREVIDRLNAAGFVAGRHDH
>NZ_LT907988.1|WP_067757039.1|1309585_1310311_+|hypothetical-protein
MTRRNLAIFALAMFALGACASPPSAPSSGGSPRTEKMSADQFGQTDFNRTVTIAMRDNQAGLNSLLDKLYRRNPREWRKGGAPDFDTAVKRVRDAMAAGRPPAGLQGLRDIQILAVSLDPAYRGDRVAAFIFGLSDTIITAHGGKTRFYVSDMLDGQRVYNAARNVEAAAWLLATRKDESKQPLLLANEISDTAVNLSFEREFGALVGRLDLIANLLGENSRRVGINYAQGLMFFSFLPVR
>NZ_LT907988.1|WP_098020852.1|1308035_1309390_-|IS3-family-transposase
MAKYDERFKLKVVKEYLSGSGGSKTVGARHGLGHATVRRWVSSYREHGVCGLRRKGASYDAAFKLQVLNRMWREGWSLTQTAAAFDIRSASHIGRWERQYHEGGNEALEHRRRGCRAMSDQSVKPSGPTAPEQKTLEEVLKENEYLRAENAYPKKARCLDPAKEGGSAEKAQLIAGLRQEHRVGVLLAVAGLSRSTFYYHLKARGVADKSAGLKARISAVYARHKGRYGYRRITAALRQAGQCVNHKTVQKLMRALGLKSLVRPKRYRSYRGEVGRVAPNVLARQFEADRPNQKWVTDVTEFNVRGQKLYLSPVMDLYNGEIVAYETSERPLFGLVGNMLKKAMRRLSPGDQPLLHSDQGWQYQQPSYRRMLADRGLTQSMSRKGNCLDNAAMESWFATLKTECFYLNRYDSIDQLQKAIGQFIHYYNHQRIRLKLKGLSPVQYRTQALAA
>NZ_LT907988.1|WP_067750337.1|1305807_1307964_+|polyribonucleotide-nucleotidyltransferase
MFNKVSKSFQYGQHTVVLETGEIARQASGAVLVSIEDTVVLATVVAAKKPKPGQDFFPLTVDYIEKTYAAGRIPGGFFKREGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVIIHTLSVNPEIDPDIAAMIGASAALAISGIPFNGPIGAARVGYLDGQYVINPTASQLKDSQLNLVVAGTETAVLMVESEARELSEEVMLGGVVFGHEQQQVVINTIHDLVAEAGKPEWNWQPAPRDESFIASVTAAAQEGLTAAYQIREKQARTTKLREVYADVQAKVAAQAPEGQKVDTVAVENVLFDLEAKLVRGQILSGEPRIDGRDTRTVRPISVRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRDRFLMHYNMPPFATGETGRVGVPKRREIGHGRLAKRSLVPLLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPVKDHVAGVAMGLILDQGKFAVLTDILGDEDHLGDMDFKVAGTVNGITALQMDIKIQGITKEIMQVALAQARDGRLHILDKMREALDGSRTELSTFAPRMLSMKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTIVISSADLDRAREAQRRITDLTADVEVGQVYDGSVLRLLDFGAIVQVLPGRDGLLHISEIANYRIANINDVLKVGQALRVKVIEADEKGRLRLSVKAIGGIEAQGGAAAPAEAAPQGEPQA
>NZ_LT907988.1|WP_067750339.1|1305268_1305538_+|30S-ribosomal-protein-S15
MAVADIKKSDIVTQFQRAQGDTGSPEVQVALLTARINELTGHFKTHMKDHHSRRGLLRMVSRRRKLLDYLKGRNPDAYRSLIEKLGLRK
>NZ_LT907988.1|WP_067750341.1|1304451_1304988_-|hypothetical-protein
MKTPTFTVFRRAGLAASALLLAACSTTDHVSPDATAAELQERFGNPTVTCPLPDGGERRVWSRQPDGQFAWASIKDAEGKEGPLQQMLSDAGFAQLQGGYWPAEKIRCEFGPPAEIKEIGHGNARQVVWSYRFRHANAWDSLMNLYMGPKGDVLRRSSFIQDPRGMNSGEGNATGSSD
>NZ_LT907988.1|WP_067750342.1|1303857_1304379_-|hypothetical-protein
MARSRSSLPRLAAAALALGALAGCANIDTVAPGTPVDAVTQKYGAPTSSCPLPGGGQRLVWSQQPLGQYAWGTNTTADGRVGPIEPILTDEAFRRLDTGEWSAERVRCEFGPPAEVREVGMQSVRQVTWAYRYRESGVWNSLMYLYMGADGTLLNRRHPGPDPMYEDRGDNRD
>NZ_LT907988.1|WP_067750344.1|1303005_1303773_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MGDLRLREEKLRRGIYLLPNAFTTAALFAGFYAIVQAMNDRFEAAAIAIFAAMVLDGMDGRVARLTNTQSAFGEQYDSLSDMTSFGVAPALVIYEWSLHGLGRWGWLAAFVYVAGAALRLARFNTNIAVVDKRYFQGLPSPAAAAMVAGFVWLAVDNKFPMQDGLLAWTAFALTLYAGVSMVSNAPFFSGKSFALGRSVPFWGILLVVAVFVFVSSDPPLVLFGLFVIYGLSGWVQWLWRWNRVRRLQQERRIDA
>NZ_LT907988.1|WP_067750346.1|1302314_1302998_+|phosphatidylserine-decarboxylase
MNKPAYPHPIIAREGWPFVAGSLALAVLASFWTAWAAIPLWIIAIFVLQFFRDPPRLAPDSTTAVLSPADGRIVAVEHVRDPYADRDALKISVFMNVFNVHSNRAPVDGTVTHVQYFPGRFFNAALDKASLENERNAMVIHTPDGHVVTATQVAGLVAKRILCYVQPGDVLARGQRYGFIRFGSRVDVYLPPASRPRVALGDKVSATSTVLADLAPAAAAAAPVQQG
>NZ_LT907988.1|WP_173719715.1|1301008_1302073_+|ketol-acid-reductoisomerase
MHSFKKIQIQISRRKFMKVFYDKDCDLSLIKGKTVAIIGYGSQGHAHALNLHDSGVKVVVGLRKDGASWKKAANAGLKVEEVAAAVKSADVVMMLLPDETIAQVYRSEVAPNIKAGAALAFAHGFNVHYGQVVPRDDIDVIMIAPKAPGHTVRGTYSQGGGVPHLVAVYQDKSGNARDVALSYASANGGGRAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFDTLVDAGYAPEMAYFECLHELKLIVDLIYEGGIANMNYSISNNAEFGEYETGPKVVTEETRKAMRQCLTDIQTGEYAKRFILENAAGAPTLTSRRRINAESQIEQVGGKLRAMMPWIAANKLVDQSKN
>NZ_LT907988.1|WP_157929724.1|1312556_1313330_+|DUF3865-domain-containing-protein
MNTVTEIPVPASDSKQAQEIYLQHVSILANQVYKSRALDNEFYKLWMKEKLNPTQLEIFADNYYHWIAPTVDRLAMTFVATKDLISRIEILHNIRDELGGGHLDGVHIFVLRRWLDGLLTKNAGHPFKNVDPSTTVLLPATSALTTKSLELCVRSAPCANGAILAQEWHAYTQFVMLYEGFRQYMQAYELDEFHDLCEYLYIHIGWAEKEHKEQSIITAVRSCANDQDLAELEYGYNTFIDLLGDFWDQLHKEIVAH
>NZ_LT907988.1|WP_162292289.1|1313789_1315118_+|MFS-transporter
MAFALTQLDNSVVNVSLVALGQEFSSPLSKTQWIITAYALAFSTLLLLAGTISDRFGHGQTFRAGMIAFAAASMGCALSYSANTLIFFRTVQGVSAAFLIPSALALINRYGADSPEARTKAIGWWMAAGGVALTVGPLIGAAFSQAGLWRGVFLINIPLALFAVITIREYGNDAVDEKKDRSEAHDYWNHAIAIAGLLGWAITFILLTAREYRLALACGLGSIVVTLFLVHIERKLPKPVFLRIRDWSFRCRRILLLGLSINACIYSLLLGVSLFGQIGLGLSPIETGLLLVPYAVFVSISNVVGGRVAAKFGGPFSIALGLGIACVGYAFLCGTLPSAPYVSLLFGSIVVSLGIGVVVTAMTASYMADLPSQDSGSGAAMLNAARQLGSAVGVAIVSMLWTNGGATGIQIMTGISAVLCAIFCFLFARELPPAEKTAGWVE
>NZ_LT907988.1|WP_067757051.1|1315517_1315874_+|hypothetical-protein
MLPVLVKQYRPPRGPVQYVFWLQAQPWVSTLPGRARSARAGLAEAPPNTAGQDFLLPLAEPSLQTKVSPSQCEMPPLLPEQGVFAADAAPGMASKAAINSRRARSMKTHGKFEFTFYI
>NZ_LT907988.1|WP_067757054.1|1315989_1316385_+|DUF1090-domain-containing-protein
MTLTHLFPRAAVTLLLGACALTAQAEPAMGCKAKIDGIRAELDRARAENNTRKADGLQKALSEASANCTDAGLKAERDERVREKEEKVAERQRELQEERADGDREDIAKAERKLMDAEAELAEARREQAQP
>NZ_LT907988.1|WP_082985424.1|1316438_1316969_+|PIN-domain-containing-protein
MSGIVRRLMLRLAEAGAFQPVWSERIGDEWRRNAARIWQIDPQRLADEWADMQRRFPLADCGDAQGFEQGLKYSDAKDWHVIATARAAQGASAENVAILTWNLKDFNRSELRRMGLRALDPDRYLSERWQQDATQLALACETIAQDAASLGGTPQPLREALRRERLYRLQALAAPA
>NZ_LT907988.1|WP_157929725.1|1317080_1317230_-|hypothetical-protein
MPNPNAQQPNKPDNKPQQNDQDPQRKPGSNAPPPAGQPGNKGQPDQRRP
>NZ_LT907988.1|WP_074046833.1|1317373_1317637_-|hypothetical-protein
MKNIFPDQLIQPSTQDTSPRDIHVGDRVTLKLADGASITTTVNLAIALFGCTTYTGETEIAQARGRAPSTPARVRFRWQDVHHVEPR
>NZ_LT907988.1|WP_067757065.1|1318158_1318905_-|hypothetical-protein
MRPVFGPATWESVQFIHLTTYLDRRSAKTQGNREMSLLQVIWNWARKKGYTACTWPAAGMERSRWKNKENAREFEVTDMIFTAVYLAGDQVLQDAMDVSSATGMRLQDTISVILPMDEMLRLRASKTKKKADFDLSLSAVLPSLIARRRSIKADHLMLVSTPTGKRVSYNMLRDRWEFAREWAALNMDAAGEDELAAEIRAMFLRDMRSYASDQAETDEEAAKLLQHSSINVTRKHYRNRPTRLKVVR
>NZ_LT907988.1|WP_067757060.1|1319189_1319396_-|DUF4224-domain-containing-protein
MSEFAEDDDLFAITGYRRATEQRKVLDEEGIPYKPRGTKTLVLKIHVRAWFEGAPIRRHAEPNMGAIT
>NZ_LT907988.1|WP_067757062.1|1319419_1319653_-|hypothetical-protein
MQQYLPILALLVVAGCAFSLGWMIGLAHRKPHREIERLENAIVRARWALARAVTRDPALQADYDALDAVQIKARPRK

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Crispr_ID: NZ_LT907988_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT907988_3

2099117-2099216

Orphan

Consensus_repeat	Method
TTTTTTTGCCGCCGGGCCGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT907988_3

>merge|NZ_LT907988|3|2099117-2099216|CRISPRCasFinder
TTTTTTTGCCGCCGGGCCGCCCCAAGGCAAAAAGCGGCCCCCTTGGGGGGCAGCAAGCCGAAGGCGCGGCGTGGGGGCTTTTTTGCCGCCGGGCCGCCCC

>NZ_LT907988|3|3|2099117-2099216|CRISPRCasFinder
TTTTTTTGCCGCCGGGCCGCCCC	AAGGCAAAAAGCGGCCCCCTTGGGGGGCAGCAAGCCGAAGGCGCGGCGTGGGGG
CTTTTTTGCCGCCGGGCCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT907988.1\|WP_067760113.1\|2094793_2095162_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_LT907988.1\|WP_098020999.1\|2103601_2105290_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	unknown	unknown	gnl\|CDD\|225363
NZ_LT907988.1\|WP_067760100.1\|2101747_2103061_+\|type-4b-pilus-protein-PilO2	unknown	unknown	gnl\|CDD\|369114
NZ_LT907988.1\|WP_067760106.1\|2097754_2099068_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|182876
NZ_LT907988.1\|WP_082985541.1\|2089575_2090568_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_LT907988.1\|WP_157929745.1\|2103047_2103584_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067760094.1\|2106466_2107111_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227304
NZ_LT907988.1\|WP_067760111.1\|2095253_2096300_+\|CDP-6-deoxy-delta-3,4-glucoseen-reductase	unknown	unknown	gnl\|CDD\|181058
NZ_LT907988.1\|WP_082985539.1\|2105286_2106417_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224376
NZ_LT907988.1\|WP_067760118.1\|2093257_2093656_+\|ectoine-synthase	unknown	unknown	gnl\|CDD\|183953
NZ_LT907988.1\|WP_067760102.1\|2099319_2100126_+\|TcpQ-domain-containing-protein	unknown	unknown	gnl\|CDD\|132874
NZ_LT907988.1\|WP_067760121.1\|2091950_2093261_+\|diaminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236437
NZ_LT907988.1\|WP_067760108.1\|2096488_2097745_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_LT907988.1\|WP_067760194.1\|2111030_2111297_+\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|238180
NZ_LT907988.1\|WP_067760116.1\|2093671_2094595_+\|ectoine-hydroxylase	unknown	unknown	gnl\|CDD\|131461
NZ_LT907988.1\|WP_067760089.1\|2108349_2110971_+\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_LT907988.1\|WP_082985538.1\|2107085_2108282_+\|shufflon-system-plasmid-conjugative-transfer-pilus-tip-adhesin-PilV	unknown	unknown	gnl\|CDD\|309860
NZ_LT907988.1\|WP_067760127.1\|2090763_2091330_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_LT907988.1\|WP_098020889.1\|2100122_2101745_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274177
NZ_LT907988.1\|WP_067760124.1\|2091326_2091872_+\|diaminobutyrate-acetyltransferase	unknown	unknown	gnl\|CDD\|131459

Protein	Function_ID	Function_description	E-value
NZ_LT907988.1\|WP_067760113.1\|2094793_2095162_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	5.22168e-74
NZ_LT907988.1\|WP_067760100.1\|2101747_2103061_+\|type-4b-pilus-protein-PilO2	gnl\|CDD\|369114	pfam06864, PAP_PilO, Pilin accessory protein (PilO). This family consists of several enterobacterial PilO proteins. The function of PilO is unknown although it has been suggested that it is a cytoplasmic protein in the absence of other Pil proteins, but PilO protein is translocated to the outer membrane in the presence of other Pil proteins. Alternatively, PilO protein may form a complex with other Pil protein(s). PilO has been predicted to function as a component of the pilin transport apparatus and thin-pilus basal body. This family does not seem to be related to pfam04350.	1.02456e-09
NZ_LT907988.1\|WP_067760106.1\|2097754_2099068_+\|extracellular-solute-binding-protein	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	3.64028e-76
NZ_LT907988.1\|WP_082985541.1\|2089575_2090568_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	2.49958e-42
NZ_LT907988.1\|WP_098020999.1\|2103601_2105290_+\|Flp-pilus-assembly-complex-ATPase-component-TadA	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	1.17436e-35
NZ_LT907988.1\|WP_067760094.1\|2106466_2107111_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227304	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion].	0.000265672
NZ_LT907988.1\|WP_067760111.1\|2095253_2096300_+\|CDP-6-deoxy-delta-3,4-glucoseen-reductase	gnl\|CDD\|181058	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated.	0
NZ_LT907988.1\|WP_082985539.1\|2105286_2106417_+\|hypothetical-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	3.62092e-05
NZ_LT907988.1\|WP_067760118.1\|2093257_2093656_+\|ectoine-synthase	gnl\|CDD\|183953	PRK13290, ectC, L-ectoine synthase; Reviewed.	2.75489e-77
NZ_LT907988.1\|WP_067760102.1\|2099319_2100126_+\|TcpQ-domain-containing-protein	gnl\|CDD\|132874	cd06911, VirB9_CagX_TrbG, VirB9/CagX/TrbG, a component of the type IV secretion system. VirB9 is a component of the type IV secretion system, which is employed by pathogenic bacteria to export virulence proteins directly from the bacterial cytoplasm into the host cell. Unlike the more common type III secretion system, type IV systems evolved from the conjugative apparatus, which is used to transfer DNA between cells. VirB9 was initially identified as an essential virulence gene on the Agrobacterium tumefaciens Ti plasmid. In the pilin-like conjugative structure, VirB9 appears to form a stabilizing complex in the outer membrane, by interacting with the lipoprotein VirB7. The heterodimer has been shown to stabilize other components of the type IV system. This alignment model spans the C-terminal domain of VirB9. CagX is a component of the Helicobacter pylori cag PAI-encoded type IV secretion system. Some other members of this family are involved in conjugal transfer to T-DNA of plant cells.	1.90713e-22
NZ_LT907988.1\|WP_067760121.1\|2091950_2093261_+\|diaminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236437	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate transaminase.	0
NZ_LT907988.1\|WP_067760108.1\|2096488_2097745_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
NZ_LT907988.1\|WP_067760194.1\|2111030_2111297_+\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|238180	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.	5.02572e-22
NZ_LT907988.1\|WP_067760116.1\|2093671_2094595_+\|ectoine-hydroxylase	gnl\|CDD\|131461	TIGR02408, putative_L-proline_4-hydroxylase, ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.	5.81074e-163
NZ_LT907988.1\|WP_067760089.1\|2108349_2110971_+\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_LT907988.1\|WP_082985538.1\|2107085_2108282_+\|shufflon-system-plasmid-conjugative-transfer-pilus-tip-adhesin-PilV	gnl\|CDD\|309860	pfam04917, Shufflon_N, Bacterial shufflon protein, N-terminal constant region. This family represents the high-similarity N-terminal 'constant region' shared by shufflon proteins.	6.52558e-11
NZ_LT907988.1\|WP_067760127.1\|2090763_2091330_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.35595e-18
NZ_LT907988.1\|WP_098020889.1\|2100122_2101745_+\|hypothetical-protein	gnl\|CDD\|274177	TIGR02520, putative_Type_IV_pilus_protein, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	2.43185e-48
NZ_LT907988.1\|WP_067760124.1\|2091326_2091872_+\|diaminobutyrate-acetyltransferase	gnl\|CDD\|131459	TIGR02406, L-24-diaminobutyric_acid_acetyltransferase, diaminobutyrate acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase. [Cellular processes, Adaptations to atypical conditions].	6.09861e-74

>NZ_LT907988.1|WP_067760106.1|2097754_2099068_+|extracellular-solute-binding-protein
MNMMQSAGVPRIVRAAGHALVLGLAGVSAQAMAATDVQVWHTLSPANKDQLEKIVKQFNRDQKDVRVVLKGFDSQANLRDAATRAVAAKKGPHLVQIEDNHSPDVIAEHKSILPLYRLLDDYPIKDLGWFLPQTSSFVRDNRGRLLAFPWMAEIPVMFYNLDAYKKAGLDPKAPSRTWNDLQADLLKLRDNTDLNCPYATSQQVSVHLENLAPMNNRLYTSANNGLDKGTPKFNFDSLYMRHLSLMVSWKRSLLLTEHTDDDRADALFAKGQCGVLTAGSGALGSILAGKVPFGVTPLPYYSQVAKQPGRPFVSGSALWAVAGHPRDEDKATMAFLAYLAKPVVAAQWHQNTGFLPLTDAAFRAADVSFYNRVPGAQAVVESVRATPAASARGFRLANYPQVEQIFNAELQTALSGDVPPMRALNVASEKAEAAMRR
>NZ_LT907988.1|WP_067760108.1|2096488_2097745_+|D-amino-acid-dehydrogenase
MKIAVLGSGILGTSSAWWLRQAGHDVVVLDRAAGPAQETSLANGGQISVSYAEPWANPQAPLKLLRWMLRDDAPLLFRPQADWRQWQWGLAFLRECLPSRLAPNIRALVSMAEYSRGILRQMRAALDIDYDQLSRGILNIYRDPAQFEASQRAAGMMREFGVDRRAISADEAVRIEPALAAYRHRLVGADYTPEDESGDVHRFTVALAERAADAGVEFLFSTQATRLHTEGGRVSGVEFIGADGRYGLLKADAYVAAAGSFTPALVRPLGVSCPVYPAKGYSATFPVLDPDAAPSVSLTDSGNKVVISRLGDRLRMAGTAEFAGYSRALNPARCQMLAQLAGELFPGALDIGRAAYWSGLRPATPSNVPLIGRTRVPNLYLNTGHGTLGWTMGVGSGKALADIVDGRRPEPEFPFIGL
>NZ_LT907988.1|WP_067760111.1|2095253_2096300_+|CDP-6-deoxy-delta-3,4-glucoseen-reductase
MSFQVTVLPSQHTFTADAGQTLLDAALAAGIVLPYSCRNGACSTCKGRVVSGDFEAGGTPAQILSTEEIAQGYTLFCQAHARSDMVLESKEVRLASDIQIRKLPARVMTLERAAPDVTVLTLQLPATEPFRYYAGQYIEVILKDGRRRSYSMASPPGTGGPLELHIRHLPGGVFTDHVFGAGATQMKEREIMRLEGPLGSFFLREDSDAPIVLLASGTGFAPVKAIVEHMQLAGIRRPVRLYWGGRRPQDLYMHALAEGWAAQIPDFQYIPVVSQALPEDNWTGRTGFVHEAVMQDLPDLSGWQVYACGTPLMVDAARRDFGARCQLPEEAFFADAFTSEADVAALKG
>NZ_LT907988.1|WP_067760113.1|2094793_2095162_+|aspartate-1-decarboxylase
MQRIMLRAKLHRVTVTEADLHYEGSCGIDPDLLDAADMREFERIELYNVTNGERFDTYIIKAERGSGKISLNGAAARRAQVGDLMIICTYGPMSEAQVATHKPRVILVDEQNRIKEIRKFED
>NZ_LT907988.1|WP_067760116.1|2093671_2094595_+|ectoine-hydroxylase
MISPAKDPYASRTDRGSAIIARQDPVVHGNGDYADALKRDQLDAYERDGFLLLEDVFSEKEVAALLAEAERMTRDPAIIRREESITERNSDVVRSIFMVHVLSPVILKLARDPRLIHVARQILGSEVYMHQSRVNLKPGFKGKEFYWHSDFETWHVEDGMPNMRALSCSVLLTDNNACNGPLMLVPGSHHQFISCVGETPENHYKDSLKKQEYGVPDPVSLQLLVEQGGIKPMTAKAGSVVFFDCNTMHGSNSNISPWPRANVFMVYNSMENTLNSPKYGLAPRPEHIATRSSFSALTPLDTLKSVR
>NZ_LT907988.1|WP_067760118.1|2093257_2093656_+|ectoine-synthase
MIVRNVKDVIGTENEVKTDTWMSRRVLLKKDGMGFSFHETTIFPGGQTHIHYQNHLEAVWVVEGDGEIETIADGKKYKLEPGVVYALDKNDEHWLRGGKEPLRVICVFNPPLTGLEVHDEKGVYPIVEDQAA
>NZ_LT907988.1|WP_067760121.1|2091950_2093261_+|diaminobutyrate--2-oxoglutarate-transaminase
MDLKIFDRMESEVRGYIRSFPVIFNQARGSVLIDENRNEYIDFFSGAGTLNYGHNNPVFKEKLVEYVESDGVVHGLDMATSAKKQFLETVERVLLKPRNWQYTLQFTGPTGTNAVEAALKIARQVKGRQNIISFTHGFHGVSGGSLAVTANAKFRNAAGVALANTSFMPYDGYFGPDVDSIACIERMLEDPSSGLDKPAAVIVETVQGEGGVNVATLRWIKELEKLCRRHDMLLIVDDIQVGCGRTGSFFSFESAGIRPDIITLSKSLSGYGLPMSLVLMKPELDIWKPGAHSGTFRGNNLAFVTATAALDTYWTSDAFSTEIQRKERMVRDWLENVVHSYPNAGLAVRGRGLIQGLVTNGDPSLAGRIASKAFEQGLVIETSGAQDEVLKLLPALTIEDELLTRGLEVIERSVGEALAESGQQGARVLKFGGKAR
>NZ_LT907988.1|WP_067760124.1|2091326_2091872_+|diaminobutyrate-acetyltransferase
MSEAMTLAPVAAHALRPPRREDGAAIHALIQASPPLDLNSVYAYLLLCEHHAGTCVMAERDGALDGFISAYVPPGRDDTLFVWQVAVHERARGHGLGGQMLSHLLARPALAGIRHVETTVGPDNQASRRMFAGLARRLGTSVAESPLFPASLFGGQGHEDEELLRIGPFDVSSEAGRRDRG
>NZ_LT907988.1|WP_067760127.1|2090763_2091330_+|MarR-family-transcriptional-regulator
MNDSVTTQQSAPTPSPQQYDLRILRALRRITRSVALHSRQLAACSQITAPQLICLRAILAAGGPLTATALSREMHLSPSTVVGILDRLEDKGLITRERGREDRRIVFVRATAAGDALAREAPSPLQKRLADSLNALPELEQATITLSLERIVDLMEAESPAGEAQADHGSPILDVPTHGAPPESGLVV
>NZ_LT907988.1|WP_082985541.1|2089575_2090568_-|MurR/RpiR-family-transcriptional-regulator
MQGESAMAAMSAQERLQQGYAGYTPELQRAARWIISHPAEAGLWSMRRQAEAVNVSPATMLRLARAAGYDGYDALRQACQQALARKANTTLRERAAALQAGPELDGHAALTGLQVDALRSVQQANSLAQLDAAAQTMLQSRLVGFLGTRSSFGIAFQMRYAYQLVRSNGILIDGLGAMQAEAADVLQAGDALVVISQAPYPALTVQLATELSARGVALIALTDSPLAPYTAQARHTLVFTPPDTGQAQGRPGSFFHTTAGLLGLAEHLVARLAARGGPEVLTRLSAVETRLRARRAYWRATPEAGERQHTNAAHAASPSLSSDAPFSDTP
>NZ_LT907988.1|WP_067760102.1|2099319_2100126_+|TcpQ-domain-containing-protein
MTRSVFLLCLPPLLAGCLATPTGPAWTPPAAARYDFNWRLSGERALAPQQVFHDGQDTWLQFAPGQAVPALFAQSAQGERALPYQSRDPYVVVRGVWPALLMRGGSAVARAQYLGAGQEGGRAPARGVERDVLPVAQAPQAVPVELLPVDAPPAAASGLPAQTPPIAPSSLRYDASPAQGTMRAVLRDWSRQAGWTFEPEHWTVAVDIPLAGTASFSEGYEAAVSELLRATELGDQPLQPCFYANRVLRVVSLREACDRTAPVGEGAA
>NZ_LT907988.1|WP_098020889.1|2100122_2101745_+|hypothetical-protein
MSTASVSRVCRGLLLLGAWQGLSACALVQRLDERLLDGERRQETLRAGHDAFARSVTDTALRRGGQHVARAWLAGRAQPLAREVTLPAALRRDVNTTLLFADGQANLLVLAERISRATGLPVRVQPDALLPQEQFLPRLAAGATGAPMVALPTQASFGDGPRPLPDVLDALSWRLGVHWRYREGVVEFFRVETRVFDVRLLSLDARADARLGRRGQDEPGGFESASSTALTAGEPDGLAALTRRIEPFLSRAGVIAAPAGGAGSVIVTDTRDALDRVARFLETENRNLTRRVRLVFEEVTLIADRQNEGGIDWQVLHRSGRAAASLAGAASGSVTEGASLGAALVGGGAEGSQALVSALARMGTVLRHTRVPVYTLNRRPVTHAVRTTFSYIDQAQTASGGAIVGAPLGSALPSVSVTQKQETTGTFLTLLPDAQADGQILLSVSYDSTVAQPLQTVTLGAEENQVRIQQLTVDGSGTVQQVALRPGQAMIIAGFDRSQDDAQRSRPLEGWPLLAGGRDRLSGQRATTLVMVSAEVEEGF
>NZ_LT907988.1|WP_067760100.1|2101747_2103061_+|type-4b-pilus-protein-PilO2
MPWQLESAEAGSPLRTARAQGRVLVFGLDWQPLLGRDVPRLALARARGLRASHYVWSAGQGASVGCARLRRPRARRREAWLSAAVAARLAAGTPSGMVLLALDAGCVWLSAWHAGAVLADSDRVHDSRASADAALDALEARYPGLARFGNVPMEGGWQPLEAAQVLAAAGDGARLLPVASPRRRALAGLAGTSLALAFGWRALRSAEPARVGTMAVEPAQAWADALDRHAAGVPWHGPAALARALGALRALPASVTGWFLRDAQCLPRHDGWHCQARYARGTLGRNLDLVAVAPPGWAVHFDLLDGARLTWVVAHDGAGVPWRRLGSARDTELVLASRLQRHARLFSAIRLDAWQVLPLAPPADAQGAALTWPEDWPAVGTRQLTVEGPLYAYALLQDWEVAAAWQSLQLQVQHPSDAALAARRATVRLQGVLYEKH
>NZ_LT907988.1|WP_157929745.1|2103047_2103584_+|hypothetical-protein
MKSIDPRGPSPAWPVVLLAGVLALPQAWADEPLASPPAGAARAMPAGTAVQDAPAPPDGQRVWSQAPTVQDLVRLDLEAALAQRRGQWQASGEPPRGGMASAGGKPDTPALRLAAIYGVGRQLQAELLSEGRRVVLRAGGGGAAPQGLRLLSIDGECVRVRARDDVVHALCLARAEAS
>NZ_LT907988.1|WP_098020999.1|2103601_2105290_+|Flp-pilus-assembly-complex-ATPase-component-TadA
MPVPPAVAPPRCIALSGQDDLARMTPPLDRVLCDDFDLAGLAGKLCPARREDGSAVIFAVQDEARSDAAWELARQLQQRGYRLADPVCVILPATLLLALASRRVRSDTLNSRRQVLADPQRSALSHAFAEIVAWGVRAHASDIHLNVRTRHAESQVRYTVAGRYVSPDCYARMPTATLREILSVAWMEVQGGNGSVFDPAIEQQGRIWHQAAGRHVMLRWASLATDAGPSVCLRIVRLDDTVATADLAGLGYLPGQVDILARACRVEGGAVVLAGVVGSGKSTTLAGMMRTIPETRKVITLEDPVEYLIPGALQNTVGRDLETTEATVFDAKLRTLKRSAMNDLMIGEIRDVQTGRAFMDLAGSGVSVYTTTHAGSAVLVAERLASDFIGIARDFLATPGVLKLLGYQALLPALCQACALPLDSLGADRRDPRDWRGWVGGIESAYGVDCAGMRVRNPAGCPQCAPGQLPGLAGTRGRTVVAEFVEPDADPECLRLIRARDNLGLARHVAASRRAAFDSPDMSGKSAMACGLYKALQGWVDPRDVEARFRPFDHVPAWERGR
>NZ_LT907988.1|WP_082985539.1|2105286_2106417_+|hypothetical-protein
MSAAGWRHAIAALAHRAAWFHACRRLRRERADYYEYLAERMAAGVGGKTLLALFRGDAARRGNPLRARLSAEWARRCETGGGDLFEVWSGVFPEEDLLLLRTAQQAGAAALVQALRDLADATRLVEGARRTLRQTLAAGVVALCVLAGMLAAVPHYTAPRLWRTFQGVPQDLHGPTAQAFQQFSVWLQAWLPACLSGLCVVLAGFVLSLPRHTGHLRTVLDRHAPWSLYRDFQGMRFLLLLALLLRPQGHRVMALRDALARVAGSSGVWAAWQAQRVGDRLDAGWTGADVFDTGLFDPQLGGFLQDMIDAHGMDTGLRRATERLRTQALRRLSGQAQAWRWVLLLGALAGLLALAAWHYAVIDDLRRAMMIHHAGR
>NZ_LT907988.1|WP_067760094.1|2106466_2107111_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MSCTIFRLPHPSLPLARGHARARAASQGGFSLIEVSIVTAIILLIAVVGVPAVNAYVIENRVPRVAEELQRFVLRLKVGAQGAGSGPYAGVGTRLLGQNFQRSGVLSVAGEGDGAQVAHGLGGSGRGGDGVVTLAPENGAGDAFVLRLGEVNDAACPALASILQRLAEQVSVSSDKGTTLLKSDLVNPRIAYSAVLAQAACSDGDSNAFSFVFR
>NZ_LT907988.1|WP_082985538.1|2107085_2108282_+|shufflon-system-plasmid-conjugative-transfer-pilus-tip-adhesin-PilV
MRFPLSSASFPLAGRRPAPVARQRGFSLLELAVAAALSALVAVWAASAWVARLDDAAAESVGTWLVALHAAAAPVVREIERAERGEAGQPLSPALTGLAQLPVATLKALGHLEAGFPERSAWGAPARLELLRSQACPGSQCRIDLLLHTPVSGAEGRASEDVGRIGGVLLAARGLAGAIHPQAPGQLRGANFALPNPPAPGLAALPVGTVALHARGAPLVDDPYVRRRDTRDPDLQGPLTVAGAIHGGADLLVDGRMTGRGDLRIAGQVQGGEIVALGAISGAGVRSHGRLSSGEYLMLEAQAVPGSPCSSAGLVARDVSGALLACQQGTWRLQGGGFGGMFLMASSGHCVTGGGFKPNPVTGACSCPVGFLPYPVAQTRGGFHDEDFQVYHTYVCMP
>NZ_LT907988.1|WP_067760089.1|2108349_2110971_+|alanine--tRNA-ligase
MKVSEIRQKFLQFFQSQGHTIVPSSSLVPGNDPTLLFTNSGMVQFKDVFTGKESRPYRRATSAQRSVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAIRYAWELLTKVYQLPAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGARYASDNFWQMAETGPCGPCTEIFFDHGPDVWGGPPGSPEEDGDRYIEVWNLVFMQFERDASGTLTPLPKPCVDTGMGLERIAAVLQGVHSNYEIDLFQKLIAAASRETGCQDLHENSLKVIADHIRACAFLIVDGVIPSNEGRGYVLRRIVRRALRHGYKLGQSKPFFHRLVPDLVQEMGAAYPELEQAASRVAQVLKQEEERFGETLEHGMKILEAALSKVEQGGRVEGTTLFTLYDTYGFPVDLTADICRERGVEVDLDGFETAMDRQREQARAAGKFKAAEGLSYDGVQTRFDGYDTLSGDARVVALYVGGTAAQTVQAGQEAIVVLDATPFYAESGGQVGDAGVLQADGVRFVVNDTQKIQAGVFGHHGVLESGTLSVGDSLAAQVDVERRARTVRNHSATHLMHKALREVLGGHVQQRGSLVDPDKTRFDFAHDAPMTADQIAEVERIVNAEVLANAPVQARVMAFDDAVQEGAMALFGEKYGDSVRVLDIGSSRELCGGTHVVRTGDIGLFKIVGEGGVAAGVRRVEAITGDNALKWVQNLNATLVRAAGALKTQPAELPERIAQVQEQVRALEKDLEQARAKLAASAGNDLAASAAVDLGGAKLLAAVVKDVDPKALRGMVDQIKDRLKPAVVLLAAGGPDGKISVVGGVTPELVGRVKAGELVGHVAGQIGGKGGGRPDMAMGGGVDLAALPAAVDSVRQWVQERL
>NZ_LT907988.1|WP_067760194.1|2111030_2111297_+|sulfurtransferase-TusA-family-protein
MSENETPDGAVEPPMHHLVVDACGLTCPLPILRAKKALAQLESGQVLKVLTTDRNAVKDFQAFSRQTGNTLLLQQAVGARVLHYLERR

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Crispr_ID: NZ_LT907988_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT907988_4

2726135-2726240

Orphan

Consensus_repeat	Method
CTTTTTTGCCGCCGGGCCGCCCCAAGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT907988_4

>merge|NZ_LT907988|4|2726135-2726240|CRISPRCasFinder
CTTTTTTGCCGCCGGGCCGCCCCAAGGCAAAAACGGCCCCCTCGGGGGGCAGCAAGCCGAAGGCGCGGCGTGGGGGCTTTTTTTCCGCCGGGCCGCCCCAAGGCAA

>NZ_LT907988|4|4|2726135-2726240|CRISPRCasFinder
CTTTTTTGCCGCCGGGCCGCCCCAAGGCAA	AAACGGCCCCCTCGGGGGGCAGCAAGCCGAAGGCGCGGCGTGGGGG
CTTTTTTTCCGCCGGGCCGCCCCAAGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT907988.1\|WP_067758676.1\|2715496_2715874_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067758645.1\|2731000_2731849_+\|putative-hydro-lyase	unknown	unknown	gnl\|CDD\|180100
NZ_LT907988.1\|WP_067758683.1\|2714051_2715020_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_LT907988.1\|WP_067758642.1\|2731874_2732993_+\|TRAP-transporter-substrate-binding-protein-DctP	unknown	unknown	gnl\|CDD\|270320
NZ_LT907988.1\|WP_067758936.1\|2719095_2720928_-\|IucA/IucC-family-siderophore-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226715
NZ_LT907988.1\|WP_067758660.1\|2723586_2726022_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|236643
NZ_LT907988.1\|WP_067758933.1\|2727283_2727778_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|182018
NZ_LT907988.1\|WP_067758648.1\|2730149_2730881_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226004
NZ_LT907988.1\|WP_067758651.1\|2729086_2729980_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LT907988.1\|WP_082985480.1\|2733053_2733614_+\|TRAP-transporter-small-permease	unknown	unknown	gnl\|CDD\|377284
NZ_LT907988.1\|WP_067758673.1\|2715923_2717138_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
NZ_LT907988.1\|WP_067758637.1\|2734955_2735636_+\|4-hydroxy-4-methyl-2-oxoglutarate-aldolase	unknown	unknown	gnl\|CDD\|223756
NZ_LT907988.1\|WP_074046844.1\|2726265_2727291_-\|FecR-family-protein	unknown	unknown	gnl\|CDD\|236622
NZ_LT907988.1\|WP_067758664.1\|2720948_2722214_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT907988.1\|WP_067758670.1\|2717150_2717933_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235705
NZ_LT907988.1\|WP_067758667.1\|2718069_2718870_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_LT907988.1\|WP_074046846.1\|2733613_2734885_+\|TRAP-transporter-large-permease	unknown	unknown	gnl\|CDD\|224509
NZ_LT907988.1\|WP_067758654.1\|2727845_2729087_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341038
NZ_LT907988.1\|WP_157929756.1\|2715105_2715468_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067758663.1\|2722210_2723593_-\|SidA/IucD/PvdA-family-monooxygenase	unknown	unknown	gnl\|CDD\|226017

Protein	Function_ID	Function_description	E-value
NZ_LT907988.1\|WP_067758645.1\|2731000_2731849_+\|putative-hydro-lyase	gnl\|CDD\|180100	PRK05463, PRK05463, putative hydro-lyase.	8.42278e-152
NZ_LT907988.1\|WP_067758683.1\|2714051_2715020_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.47196e-66
NZ_LT907988.1\|WP_067758642.1\|2731874_2732993_+\|TRAP-transporter-substrate-binding-protein-DctP	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.38759e-72
NZ_LT907988.1\|WP_067758936.1\|2719095_2720928_-\|IucA/IucC-family-siderophore-biosynthesis-protein	gnl\|CDD\|226715	COG4264, RhbC, Siderophore synthetase component [Secondary metabolites biosynthesis, transport, and catabolism].	1.36609e-164
NZ_LT907988.1\|WP_067758660.1\|2723586_2726022_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|236643	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional.	0
NZ_LT907988.1\|WP_067758933.1\|2727283_2727778_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|182018	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional.	6.2998e-46
NZ_LT907988.1\|WP_067758648.1\|2730149_2730881_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226004	COG3473, COG3473, Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism].	3.55688e-62
NZ_LT907988.1\|WP_067758651.1\|2729086_2729980_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.38871e-41
NZ_LT907988.1\|WP_082985480.1\|2733053_2733614_+\|TRAP-transporter-small-permease	gnl\|CDD\|377284	pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. The function of the members of this family is unknown, but DctQ homologs are invariably found in the tripartite ATP-independent periplasmic transporters.	5.34416e-15
NZ_LT907988.1\|WP_067758673.1\|2715923_2717138_-\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	1.89279e-162
NZ_LT907988.1\|WP_067758637.1\|2734955_2735636_+\|4-hydroxy-4-methyl-2-oxoglutarate-aldolase	gnl\|CDD\|223756	COG0684, MenG, Demethylmenaquinone methyltransferase [Coenzyme metabolism].	2.35406e-40
NZ_LT907988.1\|WP_074046844.1\|2726265_2727291_-\|FecR-family-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	1.30237e-72
NZ_LT907988.1\|WP_067758664.1\|2720948_2722214_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.48731e-15
NZ_LT907988.1\|WP_067758670.1\|2717150_2717933_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235705	PRK06127, PRK06127, enoyl-CoA hydratase; Provisional.	2.33171e-73
NZ_LT907988.1\|WP_067758667.1\|2718069_2718870_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	3.03664e-126
NZ_LT907988.1\|WP_074046846.1\|2733613_2734885_+\|TRAP-transporter-large-permease	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	3.33051e-82
NZ_LT907988.1\|WP_067758654.1\|2727845_2729087_-\|MFS-transporter	gnl\|CDD\|341038	cd17485, MFS_MFSD3, Major facilitator superfamily domain containing 3 protein. Major facilitator superfamily domain containing 3 protein (MFSD3) is a predicted acetyl-CoA transporter. As an atypical putative membrane-bound solute carrier (SLC), MFSD3 is most likely to be functionally active in the plasma membrane and not in any intracellular organelles. MFSD3 belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.43672e-83
NZ_LT907988.1\|WP_067758663.1\|2722210_2723593_-\|SidA/IucD/PvdA-family-monooxygenase	gnl\|CDD\|226017	COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	3.15371e-164

>NZ_LT907988.1|WP_067758660.1|2723586_2726022_-|TonB-dependent-siderophore-receptor
MANRQLLSPARAGGVSIVFSRPGLTLLCLVAALQWAVPAAQAQSAATEIPRRYDIPAGPLDNALSALGAQAGVMVAADPALTQGLRTQGLQGSYSVAEGLARLLAGTSVQAVPGRNGGYVLRARPQPDPGLDALAPVTVMGAEQTAYSAGDSLVARRSAAGTKTDTPLLETPQSVSVITRKQLEDQKPRSISEALNYTPGIFTALVGATNRYDYVSLRGFTDNSVDNVLLDGLRTLSDQGSYTALQIDPYFLERADVLRGPASVLYGRSSPGGVVALTSKRPSFEPYRQAEVTVGNRDRYEAGLDVTGPLGESGKVAYRVTGMGRTLDSQFDHVSEQRYAIAPSLDIHFSDRTRLLLQAYLQRDPEGSYHGAVPADASITNSHAGRRTSRRFFDGDPTANAYDRRQQLLGYQFEHVFNDRVAVRQNFRHVRTRASLEQVYGFGWADETSLTRYYAGAQEKMHAVAVDNQIEFKFGTGTVQHTLLGGLDYQRRKLDGTWRSGSADPVDAFDPVYGNPNIADIYSAPVDRQLEQTGVYLQDQLSWNKWRLTLGLRHDQARVTNAYDNAASSWKGSRLTKRAGLVYLFDNGLAPYVSYGEGFNPSIRADQQNRLLKPATSKQYEVGLRYQPPGSESYLSGAVYQLTQDNVASRAPTQPFYEPSGKVRARGLELEARSQLSKTFAVLASYTLNDLTFVESADGFKGNTPYQAPKHLASLWVDWKAMAGVDVGAGVRYVGTNWIDNANSGKVPAVTLTDLMVRLDLGQFHQGLAGSSVRLSANNLFDKTYVASCISIENCYWGEGRNLMATLSYAW
>NZ_LT907988.1|WP_067758663.1|2722210_2723593_-|SidA/IucD/PvdA-family-monooxygenase
MVKGRGRPGGKSGKGRSAVKDEGVHDFIAIGLGPFNLSLACLAEPIESLRGLFLERNATFDWHPGMLIEHTTLQNPFLADLVSLADPQSRYSFLNYCKQEGKLYSYYIRENFTLSRAEYNRYCKWVVARLGNLRFGHEVRSLGHDAASGLYVVAGVVGPARTPFTYHCRKLVLGVGSVPDFPACCRESGHRYLHSSDYLAHKAALQGRKSITLVGSGQSAAEIYHDLLRDSGNHDYQLTWITRSPRFFQMENTKLTLEMISPDYIDYFFDLPDATKAGIIDRQDSLYKGVNASLINRIYDLLDDLRSQGRLRTHLITNCEVQACRQVEDGTGYVLDFVQRDTRARYTHRTEAVIFATGYRQNIPPFVEGIRHRLRWDGQGRYRLSRHYAADLEGTDVFVQNAGMHTHGLTNPDLGMSCYRNSCIIRALTGVEHYKIERNIALQDFAVPVGEHFQRIAEHA
>NZ_LT907988.1|WP_067758664.1|2720948_2722214_-|MFS-transporter
MTLRTHIIVMTAFAVVSDAILIPFYPQFFSLRYGMDSSVHVGAYVAAISIAVMCTLPLWARLARRVEPLHLLVWTQLAAGTFSVASNWAPDVAWYWGLSMLMFMCKSSYLLMYPYLMRLTPKAEHAGVVGTLSVVVNFGAILGAVVGGFVLSEWGATGSIMAMAAGDFFQMGVCAYLIRSGRIVRTTRAHDPGYVAPASPLPALAAWRARMPILRLALIMLLFDFGCYVIRPFFSTHWQAISGDDSELASGAVFAIPGVLALIALRVHARLRARQARLPDHTLGNLLLGMAGLLMQGAPDPALVIVGRCLYGWAIFQIIVKLDVALFRLSRPERYAQDFAVTNFFQNLGVLLSSFAAGAIVSRYGLYMPFVVGAAVFLLTGMLDRLILRVPSASEARVADVGCTRDLFKAASPTVPEDIQA
>NZ_LT907988.1|WP_067758936.1|2719095_2720928_-|IucA/IucC-family-siderophore-biosynthesis-protein
MSQQPAQAATHLTPEHWAASNRHLLRKALSEYSHELILAPEMIEDMDDGLARYTLTSDDGKTVYTFIARVLALRHWSIDAESITRVREGKTLPLDALQFIIDVRARIGIKEELLPIYLDEISSTLYGAAFKLAKADAPSSSELAQTQDFQRIEVAMREGHPGFVANNGRLGFNAADYRAYAPEAGSPVRIMWLAVHKDNAHFASIPGLDYAQLMREELGEATVARYTEIVLGQGADPADYYFMPAHPWQWFDKLSIAFAAYVADRKIICLGYGDDEYLAQQSIRTFFNVTDRSKRYVKTSLSILNMGFMRGLSPYYMSGTPAINDYISGLIERDDYLRENGFTTLKEVATLGFRNYYYEAAIPADTPYKKMFSALWRENPLPRLRPGESLMTMAALLHTDTQGKALLPELIRRSGLDVQAWLASYLRAYLAPLVHCFYQYELVYMPHGENLILVMDNCVPVRAIMKDIAEESAILNVEARAHMPENVHRLAVDVPENVKLLAIFIDVFDGVLRYVNEVLVANQCCDEGTFWQAVADCILEYQDAHPEHAARYARYNLFAPEFLHSCLNRLQLGNNLQMVNLADPAGNLKMAGNLQNPIARVPARDMALSA
>NZ_LT907988.1|WP_067758667.1|2718069_2718870_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MNKRNFLSTVVLAAATLVFSSSAVFAQDKPIRLGVTAGPHAQIAEAAKAAAAKDGVTIQVIEFSDFIQPNSALVAGDLDANAYQHHPYLDQQVADRRYKLVAAANTVILPMGMYSKRVKSLGELKDGATVGVPNDPTNGGRALLLLQQQGLIKLRADAGIKATPIDVVENPRKLRLRELDAAQLVHALDDLDAAVINTSYAIAAKLNPSKDAIAREEANSPYTNLIAVRQEDKDKPWVASLVKAYHSDDVRKFIETQFQGSIVPAF
>NZ_LT907988.1|WP_067758670.1|2717150_2717933_-|enoyl-CoA-hydratase/isomerase-family-protein
MSGTITLQRDVHVATLIIDNEAKRNAISQRMWVELAGHLQALTGDATLRCIVLRGAGTQAFGSGADIDEFEELRSTKEKGIAFGKQAHLAMQTLRESPVPTLAAIRGACVGGGLEIAACCDLRIASEDARFGIPIAKLGGVLAYPEMQALLGAVGPQVALELLLEGRLLNAAQACAKGLVTRVVPVDAWEAEISTSVARIAALAPLSARWHKRFIRRLQAQPEPLTQAEQEEGYACFDTQDFVEGYRAFLDKRTPVFQGK
>NZ_LT907988.1|WP_067758673.1|2715923_2717138_-|CoA-transferase
MNQAARKGPLAGLKVVELTNVMAGPVAGLMLADMGADVIKVERLPGGDDTRRATPPEISGESCAFMIINRNKRGIAVNLKKPEGVDVVRRLIAKADVVLENFRPGTMEKLGLDYPSLKAVNPAIIYCKITGFGLTGPYAKRAGYDLIAQGMSGIMSLTGEGPGRPPVKVGVPVGDVSAGILASNGVLAAYIERLRTGEGQYLDTSLYEASMIYTYWQAAMAFATGESVTPMGSAHPVAAPYQAIPTQDGWVNIGAVSQSTWEKLAQAIGMPELVTDARFSTNGARMKHRETLIDIISQAMSGHGTDYWVERFEAAGVPAGPVRKMREMLDDPQTLARDMVITVDHPVAGEVQALGLPVKFSNGNGVTRRGAPLYGEHTQEILREVGYSDEEIAQLAGIEAVAVR
>NZ_LT907988.1|WP_067758676.1|2715496_2715874_-|hypothetical-protein
MRIRRSASESVRTGLVLQERWHAEDRGLIACWERGRELALQKAELAEQAKRGELLLLPWRGGVERALKSGRKYGSLRYLAMWQGLRGEDLDIHLEIEREIVCTRHATTVFFTADQAKYATAAEDA
>NZ_LT907988.1|WP_157929756.1|2715105_2715468_-|hypothetical-protein
MKSARLIGLALLAMALGSAASATGNSRYADPNPALAACRVLQETAAWVPSARDKGIVREAATQEVLKALHGFGSSEDADLAWSAFVEEVYASAWTPTHIADRYRQLCAPYESLRIPLPFP
>NZ_LT907988.1|WP_067758683.1|2714051_2715020_+|LysR-family-transcriptional-regulator
MSMDELADEVADIFLLTVLAQTRSFTQAARRLGLSKASVSGRIGALERRVGTPLVRRSTRAVSLTQAGQALADGAATGFAAVQDSLSRVRDLADQPRGLVKLTAPVAFGRQHLAPLLTRFLMEHPDINIELDLSDRFVNLESEGFDLAIRHAGEAPPAYVAWPLARTATHLLASSRYLGRHGTPAQPEDLLTHACLPYLRSGGAATWTFQCERGPRKGERVNVPVRGRFKANNSEVLRGALLGGLGIGLLPDFSLPTGRDARTLRPVLPDWSVQGFFGETIHAMRPWSASVPQAVRSLVDFLREQLPVQLEDGRSDTRQQQN
>NZ_LT907988.1|WP_074046844.1|2726265_2727291_-|FecR-family-protein
MRDDTPSLPTFAPLADGACRPSAQVVQQAAEWMARLQDDSGEEVRLACERWRAAHADHECAWRRLADLARNLSSTRHYADANLVDGTLARSDMREQRRGIIKLALLLAGAGGLGWQAVNLAPPGWLAAYQTGVGERRTLTLADGTRVDLNTDTAIDVSVDGQTRDIWLRRGEILVATGHDAQARPLRVHTDSGDILPIGTRFTVRQFHGGDRQGVRVAVLEGAVRLVPREASAPQAVVNAGQAACFDTGRVQAVAGIDDASAEASWLHGMIVAVRMPLARFAAELGRYRSGLVQCEGDVAHLSVTGAFPVQDTDAALRMLEEVLPVRIRYRTRYWVQIRAS
>NZ_LT907988.1|WP_067758933.1|2727283_2727778_-|sigma-70-family-RNA-polymerase-sigma-factor
MVPQERMHKLYCDHHGWLEGVLRRKLGNRDDAADLAQDTFERVLRTPAQVALREPRGYLRAVAINLMRNRYRRAALERAYLEALAARPELTAPSPETQRLLMEALEAVHAVLDGMPERTRRIFLMAQMDGMPYKAIAAELDITVNVVQKAVVRGLQHCYQAVYA
>NZ_LT907988.1|WP_067758654.1|2727845_2729087_-|MFS-transporter
MAGMRAPVGAPSSAAIIMAIAGVYVGQSVIAGLTIIGLPAVLRDAGASLERIGLLYITVLPWSLKFLWAPAVDRFRLPAVGGDRSNLVVLVGNALCALGLAIAGLLGESLLSQVACLSFVAFVAATTDIACDGYAVEHLPRRHHGWGNAAQVGSSYLGSAIGAGLFLVLVAQLGWRSACFAMAALVLVLGLPFSLGLGRGNAVGTRSHRPMLLAAFARPEMRDAIVATALFVAAQKWGLAMLGPFLVDQGFSLSMIGVLNGAGSVVLGLSGAVSGGACVRYLGPAKVLAISLLAQAVLLACLAAIALGMDAPLQVIVSVALMASSGVMSFGFVALYSQFMRLADPRQAGVDFTILQCTDGIVTMVGGVAVGWLAERLGYGAIFGAASGVALASILIIFRLFGRIGMREPLTPK
>NZ_LT907988.1|WP_067758651.1|2729086_2729980_-|LysR-family-transcriptional-regulator
MKLSLSQIETFYWVARLKSLHAASRQQHLAQPTVSARIHELESTVGYKLFERHAQGTELTPRGLAFLKKAETLLDLADNILADDAMPLRGLLRIGSNESAALAGLGAFLATLGERYPELNVELTVDVGSMLRSRITAGGLDFAILTNPSEHPQVRDVLLGDSDMCWVSAKGKLKQREPHSPADLARLPILSVPAPSSLHALTMGWFASSRVSPPNINTCNSLAVTLQMVVSGIAIAILPRAIVQRELDDGTIDLLAVTRPVPPLPIYASFPVMGDTKVFEDIAEMAGTALLASGLTR
>NZ_LT907988.1|WP_067758648.1|2730149_2730881_+|aspartate/glutamate-racemase-family-protein
MIPKRIGILIPSTNTSVEADFKWVTSKAVTAHSERLAIPDGAMTPAFLDQMNQDLAAKVASVASASMDLIAYACTSGSFYRGPAWDEQVHALVQRTAHLPCVTTSTAVMDAFQALDIQRISVITPYPQWTNDKLAAYYGQQGMDVLGVHGDVRAAAQGHRAINDQDPDEIIQFALDHFDRDAQALFCSCTAWRAAECVTALEAALGVPVITSNQATIWAALRQLDMLHAAQPLGRLFTRSAVC
>NZ_LT907988.1|WP_067758645.1|2731000_2731849_+|putative-hydro-lyase
MANIAPTLTLPDWAATPAGVRAQARQGLLTGNTSGMAPGYGQGNLVILPKAWAEDFYGYCQANPTPCPLIGMTEPGSPLVPMLGDDVDLRTDLPRYRIWRDGVLVEECTDISAHWQDDFVGFVLGCSLSFEYALEQAGLRVRHVDEGKIVPMFRSAIQTRPVGAFHGPMVVSMRPYTPDEARIAYEVCGRLPGAHGAPVHMGDPAAIGIADVTRPDEGEPTEILPGEVPVFWGCGVTPQAAAILAKPPLCITHAPGHMLIGDVRAEDLALLGATSIPAAPHT
>NZ_LT907988.1|WP_067758642.1|2731874_2732993_+|TRAP-transporter-substrate-binding-protein-DctP
MKKTYKKLLPTALVLAAMLGIAPAHAQGDTKAELIAMAKEMKPFSMRVLGPPVGTAEWVFVVQPFWTQAVKEISDGKVTATLNSVTDISAQPQDALQLVSQGTFDMTNMVANYGSGDVPTLDGFDLAGAATSTEQIKKVLAAYEPAADAALKKRYRLELLGAGMSGAQTFFCKGNINTIDDFRGKKIRVSSSTLAELVKGLGAAPVTMAFGELVPALQRGVIDCVITGSMSGNTAKLYEVADTLYFLIAGWAPTVQVANARSLSRLDEKQRAWLDKAMTYYYREVSDTIQTSNVNQGVWCNTADTRCTMVGQSGVTQGKMKLVEPSQQDLAKVREVVEKFVLPAYGRTCGADCTRSWNETAGKAIDMQISTQ
>NZ_LT907988.1|WP_082985480.1|2733053_2733614_+|TRAP-transporter-small-permease
MSFLTNTRLRLARISRASALAGLYLMLFTALGVSADVLVRKLFGIAFVGTDELGGYAMALATSWALSYAFLEGAHIRVNVIHMTLRPAAKAWLDVLAACVTALIIGVLAWQVWIVAFESWEFDAVSNTPLRLPLWIPQFLFLGGIVLFLLSAVVVFLESLGLAARGRYEAASALAEEQNQVEEYTS
>NZ_LT907988.1|WP_074046846.1|2733613_2734885_+|TRAP-transporter-large-permease
MIGLAFAIGAFILFFAGLPIFSVIGLGALAVGLISPVPIVDALGMTAWGHSQNYVLISIPLFILLGEIFVRSGIAGEMYDAVAPWLNRVPGRLMQTNVVTSTIFAATSGSSLATSATIGAIAIPQIKRHGYNERIFLGSIAAGGTLGILIPPSINMIVYGSITNTSIPELYMAGIVPGLILMALFMLVTCVLCMLRPDWDGKVIETDWQMRLRTLPRLLPPLALFIVVVGSIYAGIATPTEAAALGVLATLVLALFKRRMSLSILHSALFATAKTNAILIIIIVFAALLNFALGLIGFSRVLDGFITNLDLGKYELILIVVLIYLVLGCFLEGLSLTVLTVPVLAPIMAKAGFDPVWFGIMVILVTEAGLITPPVGMNCYVVQAARGRGSLVDVFVGVSPYLIALFVLVGIIIAWPGVVLWYR
>NZ_LT907988.1|WP_067758637.1|2734955_2735636_+|4-hydroxy-4-methyl-2-oxoglutarate-aldolase
MYVLNDLPPAIDRDLLDLLVQAEPAVIGHFRYTGFMTPAIKAVMPDRRIAGTAVTLRAPGMDGAMVHYAIGQARPGDVLVIDRCGDEAIASLGGAVAYAARAAGVAGIVVDGLITDLSELRQYGVPVWSRGTSAVTVKTLGLGGEFCVPVTCGGVAVAPGDAILADENGILVLPPSDIRESAERALQMMRDEKKTLARIDAGEKYPDILGSTQVILDAIQKQQAAR

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Crispr_ID: NZ_LT907988_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT907988_5

3917846-3917961

Orphan

Consensus_repeat	Method
AAAAGCGGCCCCCTTGGGGGGCAGCAAGCCGAAGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT907988_5

>merge|NZ_LT907988|5|3917846-3917961|CRISPRCasFinder
AAAAGCGGCCCCCTTGGGGGGCAGCAAGCCGAAGGCGCAGCGTGGGGGCCTTTTCTACCGCCGGGCCGCCCCAAGGCAAAAAGCGGCCCCCTTGGGGAGCAGCAAGCCGAAGGCGC

>NZ_LT907988|5|5|3917846-3917961|CRISPRCasFinder
AAAAGCGGCCCCCTTGGGGGGCAGCAAGCCGAAGGCGC	AGCGTGGGGGCCTTTTCTACCGCCGGGCCGCCCCAAGGCA
AAAAGCGGCCCCCTTGGGGAGCAGCAAGCCGAAGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT907988.1\|WP_098020939.1\|3916793_3917747_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_LT907988.1\|WP_067748557.1\|3915486_3916332_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912
NZ_LT907988.1\|WP_067748560.1\|3915107_3915482_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|132912
NZ_LT907988.1\|WP_067748542.1\|3919790_3921044_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_LT907988.1\|WP_098020940.1\|3924123_3924684_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|182018
NZ_LT907988.1\|WP_157929785.1\|3916607_3916751_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_098020938.1\|3914713_3915118_-\|anti-sigma-regulatory-factor	unknown	unknown	gnl\|CDD\|340411
NZ_LT907988.1\|WP_067748892.1\|3921973_3923881_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275272
NZ_LT907988.1\|WP_082985111.1\|3924737_3925691_+\|FecR-domain-containing-protein	unknown	unknown	gnl\|CDD\|236622
NZ_LT907988.1\|WP_067749738.1\|3928295_3929201_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_LT907988.1\|WP_067748587.1\|3910128_3910842_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213191
NZ_LT907988.1\|WP_067748551.1\|3918111_3919071_+\|arsenic-resistance-protein	unknown	unknown	gnl\|CDD\|223869
NZ_LT907988.1\|WP_173719680.1\|3921069_3921855_-\|4-hydroxy-2-oxovalerate-aldolase	unknown	unknown	gnl\|CDD\|226356
NZ_LT907988.1\|WP_067748584.1\|3910848_3912816_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_LT907988.1\|WP_067748549.1\|3919071_3919263_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_LT907988.1\|WP_067748575.1\|3912812_3913700_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|274362
NZ_LT907988.1\|WP_067748546.1\|3919259_3919649_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT907988.1\|WP_067749736.1\|3925906_3928282_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_LT907988.1\|WP_067748572.1\|3913703_3914723_-\|SpoIIE-family-protein-phosphatase	unknown	unknown	gnl\|CDD\|340411
NZ_LT907988.1\|WP_067748589.1\|3909379_3910132_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213186

Protein	Function_ID	Function_description	E-value
NZ_LT907988.1\|WP_098020939.1\|3916793_3917747_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.79552e-131
NZ_LT907988.1\|WP_067748557.1\|3915486_3916332_-\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	1.71847e-45
NZ_LT907988.1\|WP_067748560.1\|3915107_3915482_-\|STAS-domain-containing-protein	gnl\|CDD\|132912	cd07041, STAS_RsbR_RsbS_like, Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.	9.15525e-27
NZ_LT907988.1\|WP_098020940.1\|3924123_3924684_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|182018	PRK09651, PRK09651, RNA polymerase sigma factor FecI; Provisional.	3.40901e-46
NZ_LT907988.1\|WP_098020938.1\|3914713_3915118_-\|anti-sigma-regulatory-factor	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	3.61861e-40
NZ_LT907988.1\|WP_067748892.1\|3921973_3923881_-\|radical-SAM-protein	gnl\|CDD\|275272	TIGR04479, bcpD_PhpK_rSAM, radical SAM P-methyltransferase, PhpK family. Characterized members of this family are B12-binding domain/radical SAM domain enzymes that use methylcobalamin as a methyl donor to methylate a phosphorous atom during the biosynthesis of natural products such as bialaphos and phosalacine. These syntheses create an extremely rare C-P-C bond. All members of the seed alignment derive from genomic regions that include a non-ribosomal peptide synthase. Note that a single organism, Pelosinus fermentans JBW45 from Cr(VI)-contaminated groundwater, has eight additional homologs of unknown function that score between trusted and noise cutoffs of this model. [Cellular processes, Toxin production and resistance].	2.0895e-24
NZ_LT907988.1\|WP_082985111.1\|3924737_3925691_+\|FecR-domain-containing-protein	gnl\|CDD\|236622	PRK09774, PRK09774, fec operon regulator FecR; Reviewed.	1.45083e-69
NZ_LT907988.1\|WP_067749738.1\|3928295_3929201_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	2.82304e-64
NZ_LT907988.1\|WP_067748587.1\|3910128_3910842_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213191	cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter. LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.	4.89116e-107
NZ_LT907988.1\|WP_067748551.1\|3918111_3919071_+\|arsenic-resistance-protein	gnl\|CDD\|223869	COG0798, ACR3, Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism].	2.2784e-30
NZ_LT907988.1\|WP_173719680.1\|3921069_3921855_-\|4-hydroxy-2-oxovalerate-aldolase	gnl\|CDD\|226356	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism].	3.59469e-64
NZ_LT907988.1\|WP_067748584.1\|3910848_3912816_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.30815e-53
NZ_LT907988.1\|WP_067748572.1\|3913703_3914723_-\|SpoIIE-family-protein-phosphatase	gnl\|CDD\|340411	cd16934, HATPase_RsbT-like, Histidine kinase-like ATPase domain of the anti sigma-B factor Bacillus subtilis serine/threonine-protein kinase RsbT, and related domains. This family includes the histidine kinase-like ATPase (HATPase) domain of Bacillus subtilis serine/threonine-protein kinase RsbT, a component of the stressosome signaling complex of Bacillus subtilis. The stressosome is formed from multiple copies of three proteins, a sensor protein RsbR, a scaffold protein RsbS, and RsbT, and responds to environmental changes by initiating a protein partner switching cascade. Stress perception increases the phosphorylation of RsbR and RsbS, by RsbT. Subsequent dissociation of RsbT from the stressosome activates the sigma-B cascade, leading to the release of the alternative sigma factor, sigma-B.	6.2129e-26
NZ_LT907988.1\|WP_067748575.1\|3912812_3913700_-\|histidine-kinase	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.43384e-54
NZ_LT907988.1\|WP_067748542.1\|3919790_3921044_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	0
NZ_LT907988.1\|WP_067749736.1\|3925906_3928282_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	2.77547e-88
NZ_LT907988.1\|WP_067748549.1\|3919071_3919263_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	3.28194e-29
NZ_LT907988.1\|WP_067748589.1\|3909379_3910132_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213186	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system. The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).	1.12736e-109

>NZ_LT907988.1|WP_098020939.1|3916793_3917747_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MAATLAAGGLPGMAAASTDWPQRPITYTVPFLPGGATDVVGRIYSVQAAKLLGTTIVVENVGGTGGSLGTAKVARAKPDGYNIVGGTISSHAINASIYKDTGYDPVKSFTPVILTGSLPNVLVVRADSPYKTVKDIIEAAKKTASKLNYGSSGVGSSQHLTGELFMNQTGVSMVHVPYKGSSQSLQALMGGEVDLIFDNLTSAMPLIQAGRLRALGVTSKTPDRTLPDVQPLDKLGLPGFEVLSWQAVFAPAGTPDAVVQKLYQAMHQTLQQPEVRKQLEGLGLTVSGAGPEELGRFQKAEVEKWAEVARKANIQQQ
>NZ_LT907988.1|WP_157929785.1|3916607_3916751_-|hypothetical-protein
MSIEQLDLLDGQLVKIAESIRRHDADAVVANGRFLQDKFRPIAYTER
>NZ_LT907988.1|WP_067748557.1|3915486_3916332_-|STAS-domain-containing-protein
MTSDPKALLDALSDENTDLVESWLSELQLDPGARRGAQAEAENLMRAFADAVRHGSDPASFEHASAWAPMRDFLADLSQSRAAQGQTAGETSRFVLALKKPLFESAQRRLGGDAAALAKSLWSISTTVDKLAQHTVNTYQLAREDVIRRQQEELLELSTPVVKLWEGVLAVPMIGVLDSSRTQIVMETLLESIVETGSELAIIDITGVPTVDTLVAQHLLKTVSAIRLMGADCIISGIRPQIAQTIVHLGIDLNGIATKATLADALALALRQTGWRVARGD
>NZ_LT907988.1|WP_067748560.1|3915107_3915482_-|STAS-domain-containing-protein
MDRIPILRMGATLLVTIQIDMQDQTALSLQDDLAAMIAKTGATGVVIDISALEIVDSFVGRMLSNISGIARILSADTVVVGMRPAVAITLVELGLSLEGVRTALNVERGMAMLDRSRQESRLAS
>NZ_LT907988.1|WP_098020938.1|3914713_3915118_-|anti-sigma-regulatory-factor
MPVEPTGVLPLESEQHIVASRQMVRTLCQELKLSLVEQTKMVTAASELSRNTLVHGGGGRMRWEYLERLGKRGLMLHFEDEGPGIADIARAMSDGWTSGGGMGLGLPGSKRLVNDFDIESSPGKGTRVSIAKWK
>NZ_LT907988.1|WP_067748572.1|3913703_3914723_-|SpoIIE-family-protein-phosphatase
MEVIAGWTHAVFPINDASRIGEARRYAAQAIGGMEWDDDDAGRLALVVTELGTNLLHHAQQGRLLIAARTAAAEIEIVAVDDGPGIENLPRYMMDGVSSGSTPGTGLGAVKRLANDFDVHTVVPDGTVCVARIRRGRPDFRYVRPAPLHVGAICVAAPGERECGDAWAVALAPDRVCAIVADGLGHGPEAAKASSAATQAFARHAGEDPGDVVQCVHQALQATRGAAVCVTDWDLTGATLAYAGAGNINGRLLSGVFDKSIVTQHGTAGAQIRRPGVATTEVPRYALVLLHSDGIESRWKPDRLRPVLQRDPTLVAAILWRDHTRHRDDVTVVVLRREE
>NZ_LT907988.1|WP_067748575.1|3912812_3913700_-|histidine-kinase
MSGANQTDNTTPEALLAASRQEVESLREELEETNRGVVALYAELDLQAEQLKRATELKSRFLAYMSHEFRTPIGAIRSITRLLKDKVDGPLSAEQEKQVDFIESISAELGEMVDDLLDLAKIEAGRVDISPAWFEMVDLFSALRGMFKPVLVNPETTLVFEEPEGIGKLYTDNRKLSQILRNFISNALKFTQAGEVRVSVSHQEDGFVRFSVSDTGIGIAAEHHAAVFDDYSQVDSPVQKRLRGTGLGLSLSKQLAELLGGHVAVESELGKGSVFSLMLPTRWDPSPGARAQEPA
>NZ_LT907988.1|WP_067748584.1|3910848_3912816_-|response-regulator
MTEHNIISASIDRAAHTILVVDDNPATRYATARVVRAAGFQVSEAASGGEALAQAGASAVVLDVHLPDMNGFEVCGALRANPATATLPVVHLSAEFVQNKDKVTGLDAGADAYLVHPVEPAILIATLQALIRARLAEERLRGSEARFRAIYDQAPIGIALIDDEGKFFDVNPALETMLRRERDAMIGQPVSAMAPADWIAFIENETSNPTSLATPWKGDFPLYRGDGTAVRLAWTLSAHIESGLRIGIAVDVSEQFELERRRQEVLEREQAARASAERQSRTKDDFVAVLSHELRNPLNAIAGWVHLLTNNARTPAQVERGLAAMDRGVKAQARLISDILDVSRIGSGKLRLHREWVSPAALVSDAIEGLSAPALAKRVSLVVESAGAEGAAWLDATRFQQIVWNLVSNAIKFSNPGSQVFIRLRRDADHLDLEVQDSGRGIRPDFLPYLFDRFTQSESPDSRVHGGLGLGLSIAKNLAEMHDGAILAESEGEGRGTTMKVTLLAVPSIELQAAAPETPPDAADKDYVLDGLDILVVEDNADAREIMVVVLSEAGACVRHASHYEEALRLAEQAWPDVLVSDIGMPGHDGYDLIRALRAAEAREARPRLFAIAHTAFARPQDSEKARGAGFDSHLGKPLQPHALLAAISAGRRAR
>NZ_LT907988.1|WP_067748587.1|3910128_3910842_+|ABC-transporter-ATP-binding-protein
MSEVLLSCTGIQAGYGASQVLFGIDLAIREKEVVTLLGRNGMGKSTTLKTIIGALAPQAGHIRFDGKLLNGMRPDAIARLGIAIVPEGRQCFPNLTVEEHLLAFAANRNGQADSWTLDRIYAVFPRLKERARNLGNQLSGGEQQMLAIGRALSTNPRLLILDEATEGLAPVIREDIWRCLATLRDAGQTILVVDKYVHRLVGLADRHVILARGQVVWQGTSAQLDADRGLWHTHLGV
>NZ_LT907988.1|WP_067748589.1|3909379_3910132_+|ABC-transporter-ATP-binding-protein
MSLFQARGLTKRFGGLTAIDDVSIAVEAREIHALIGPNGAGKSTLVNLISGLLPLDAGHLSLDGTDLTPMNAHQRVRAGLSRCFQVTSVFRHQTVRGNLLLAAQAHDGSSFRFLSRRASERQLEDTAMALAERVGLAQEFDRVAGALPHGAQRKLDVALALAARPKLLLLDEPLAGMGPEDSLKMVELIHALRAEEAILLIEHDMDAVFRLADRLSVLVYGRVLVTGSPAAIKADPRVQEVYLGSEEETA
>NZ_LT907988.1|WP_067748551.1|3918111_3919071_+|arsenic-resistance-protein
MNRDTLERQQVWVYLAAILLGLALGAAAPALAPTWERLLWPALALLLYVTFTQIRLAHLPAAFKDTRFIAAALLGNFVLLPLLVYVILWLVPGDDAIRLGLVLVLLVPCTDWFITFAHQAGGDLRRAVALTPTLLIMQMVLLPLYLWLFMGADFMKIVSAGHMLGVFGVVIILPMALAYLTERWAEAQPPRAALIARLGWFPVPLLAIVLALIAASQVEAVLGSLPVLGSILAACLVFLLGAAACGVGLSKAFRLPTAQGRTLLFSFATRNSFVVLPFALALPSGWELAAIVVVFQSLIELFGMLAFLWLVPRKLLPQR
>NZ_LT907988.1|WP_067748549.1|3919071_3919263_-|helix-turn-helix-transcriptional-regulator
MKNHLKALRAERGWSQADLAERLNVSRQTVNAIENGRYDPSLPLAFLIARTFGLAIETIFDDE
>NZ_LT907988.1|WP_067748546.1|3919259_3919649_-|hypothetical-protein
MTTRSQQRRYAFEFLAAMGIYALVLVASLLALNAMPPDSAWRVPVSLLPVLPCVLALWVVVRQTRRMDELQMRVQFEAIGFAFAGTALLTFSYGFLENVGLPRLSMFFVWPLMAVLWMIGGQISARRYR
>NZ_LT907988.1|WP_067748542.1|3919790_3921044_+|Hsp70-family-protein
MTTPACGLDFGTSNSTVGWVRPGQHALLALEDGKATLPSAIFFHDEDGDVSYGRAALADYLAGYDGRLMRAMKSLLGSSLIDGHTEVQGRALPFRVLLTRYIAELKRRAEETAGRPFTQVVLGRPVFFVDENEAADQLAQDTLGEIARSVGFTDIDFQFEPLAAAFDYESQIDREELVLVIDIGGGTSDFSLIRLGPGRAAKPDRREDILAHGGVHIGGADFDMQLNLACVMPLLGLGSQLKSGKDMPSTPYRNLACWHTINQVYARKSVDLLSTLRMESAERDKLDLLMELVKQRAGHWVAMQVEDAKIALSDASDTQIDLSRIAPGRHVDVGRPLFDSAVGGLVGKVEIKVGELLRDAGVSTDDVDTVFFTGGSSRVPRLRESVSALVPRARSVEGDLFGSIGAGLALDAVRKFG
>NZ_LT907988.1|WP_173719680.1|3921069_3921855_-|4-hydroxy-2-oxovalerate-aldolase
MTSAFHPLDTRLPAMLASGKPLRGIFNGLPSPAIVEMCGYAGFDFIILDNEHGSADLGMTEHMLRAARAAGIAPVVRCFEADIPRVLDMGASAIQVPMVQDAAHARRLADKMRYPPQGTRGSAFSTRAAGYGAFGGNAHAERSNAGVAFIAMAETPQAIEQIDEIARVDGVDAVFIGPNDLSHAMGHGANWSAEPVQQAIAHGLKTIAAAGKCPGTIALTPQDEAKYGALGARYFANVVTSLVTRAFAQAVQASKENALRY
>NZ_LT907988.1|WP_067748892.1|3921973_3923881_-|radical-SAM-protein
MSPVRVLSIIPPMTQLNTPYPSTAYLTGFLRSRDVTAFQEDLALAVALRLLSPEGLRDVAARVAELPVKRHTASVRAFVAMQDRYLSTIGPVIAFLQGRDSTLAHRIVGRHFLPEGPRFASLDVYLDEEGGDPLGWAFGAMGLHDRAKHLATLYLNDLADVLRDAVDPRFEFVRYAESLASSQPTFDPLAEALAAPPTLVDDTLRDLTEQALARHAPTMVLLSVPFPGAVYAAFRIAQAIKAKDPAIVTVLGGGFVNTELRELKDPRVFDYFDYVSLDAGERPLLALLEHVQGKRSRQRLVRTFLRDADSGEVRYVNMVEPDVAFAEVGTPTWDGLPLDRYLSLLDMLNPMNRLWSDGRWNKLTVAHGCYWKKCSFCDVGLDYIGRYEGASAKVLADRIEAIVQETGQTGFHFVDEAAPPKSLKALATELIERNAGISWWGNIRFEKTFTPELCELLADSGCIAVSGGLEVASDRLLNLMKKGVSVDQVARVTRAFTDAGVLVHAYLMYGFPTQTVQDTVDALEYVRQLFENGCIQSGFFHRFACTVHSPVGQNPEEYGVTLRPLPPVTFAKNDIGFDDPTGVDHDALGKALKKAIYNYMHGIGLEEDVRNWFTFKVPRTTVARHRISRALEQRG
>NZ_LT907988.1|WP_098020940.1|3924123_3924684_+|sigma-70-family-RNA-polymerase-sigma-factor
MSGLDSAPQSFEHLYGSHHGWLYKWLHRRLGNAADAADLAQDAFLRVLTGKCRFDNDPQARVYLRNMASGLCVDLWRRRELEQAWADTLAALPEPTAPSAEHQAIVLEALGEVDAMLRGLPPKAAQAFVMAIVCEATDDEVANALGVSSRMVRKYVSQAMLRCLLLETRLAHARTPPQAPALASAL
>NZ_LT907988.1|WP_082985111.1|3924737_3925691_+|FecR-domain-containing-protein
MEQAADWFALLRSGHASAQDRQAWQQWLDGSAEHREAWRHVERIGTRFAPLQDSPARDTAVATYRRVSARGARARRQVLLGLLGTAGAGCLGWATWRHTPLPALALGWTADHQSGIGETRQITLADGTRVWLRALSAFDVRYDPAQRELRLSSGQMLIDTASDPNRPFFVQTRAGRLQALGTRFTVRQEEEAVLVAVFDGAVRVETADRRNAGIVPAGEQVRFTSTRLLPAAAATPALEAWSHGVLVADGLPLGEVVQELRRYHFGHLGVSPAVADLRVFGSLPIHDVPRALRMMASVLPIRLRQPMAWWISIDAQA
>NZ_LT907988.1|WP_067749736.1|3925906_3928282_+|TonB-dependent-receptor
MRLTLALASAGLISGAPSVAAQSAAGQADTLRQFDVPAGPLNRVLAKLANDTGLLLIATPELVADRQSPGVRGSDTRQGALAQALAGTGLQATQDAPGQYRLVPAPTGGVSQLEAVTVTGAIPRQGLSPAYAGGQVATGGRVGLLGSRDIQETPFSVTHYTAKLIEDQQAQNIGDVLVNDPSVRNTYSRGAGRDEFNIRGFTLFNYDVAFNGLYGVSPRNASSLIGVERVEVLRGPNALLNGMAPYGSVGGAINLVPKRAGETPLNRYTLSYISDSQMGVHADLARRFGDNKAFGARLNVAGSRGDHAVDGAREDLGAMALGLDYRGDRFRIEADLNYQNRDTDARSGLLFPPAPGVAIGRAPDARHNFFPSWTYWRTKEWSGAVRAEYDVSSDWTVYAAAGARKHDFQSLQTSWLTLDGDGNIGAVPARLDESLLSRTAEIGVRGAFHTGPVKHQPTASASVMDIDYSSARIRSGTVFSNLYTPADLVKPNIARPGGLPKTSETRLYSVAAADTLSFLDDRVQLTAGVRNQRVQSANYDALSGRRTADYGKSRLSPAYALMVRPLPALSLYANYIEGLSQGATAPAGAVNAGETFAPNVSKQVEVGAKYDFGSFSTTLSAFQIEQPSSFVDAVSGRYVADGRQRNRGLELLGQGEIAHGVRLLGGVAYTEGKLTRTEGGLNDGNHAPAVPRYQFNAAAEWDTSFLQGLTLTARMLRTTQQYVDVGNTQEIPGWTRFDVGARYAFDANGTPMVLRATVENVLNKNYWQSAAREGLTVGAPLTVLLSLSAEF
>NZ_LT907988.1|WP_067749738.1|3928295_3929201_-|AraC-family-transcriptional-regulator
MDTLQRLTAILDRHMPADGIAASPIPGITLYRASSPTMPMPVVYAPTLCVIAQGRKQVMLGATAYVYDPAKYLVASVDMAVTGAVVEATPAQPYLSLSLDLDMAQLGDLALHYPVHEEEADGPATGLALGDADPDVLDAVLRLMGLMDTPRDIDALAPLITREILYRLLTGTGACNSMVRQMAQANSRLNQIAKAIVWLRANYNGACRIDDIADIAGMSRSTFHAHFKAVTSMTPLEFRSRLRLQEARRLMVSEAMDAAGAGFRVGYESPSQFSRDYVRMFGLPPAKDAVQLRKSGELRAS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	3558873-3558926	0	1.0
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	3558951-3559004	0	1.0
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	3559029-3559082	0	1.0
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	3559107-3559160	0	1.0
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	3559185-3559238	1	0.981
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	655408-655461	1	0.981
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	3917918-3917971	1	0.981
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	4577974-4578019	1	0.978
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	4835029-4835074	1	0.978
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	4189786-4189831	1	0.978
NZ_LT907988_3	3.1\|2099140\|54\|NZ_LT907988\|CRISPRCasFinder	2099140-2099193	54	NZ_LT907988.1	4189786-4189839	2	0.963
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	655416-655461	2	0.957
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	2273862-2273907	2	0.957
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	1569351-1569396	2	0.957
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	3558873-3558918	2	0.957
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	3558951-3558996	2	0.957
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	3559029-3559074	2	0.957
NZ_LT907988_4	4.1\|2726165\|46\|NZ_LT907988\|CRISPRCasFinder	2726165-2726210	46	NZ_LT907988.1	3559107-3559152	2	0.957

1. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 3558873-3558926, mismatch: 0, identity: 1.0

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
******************************************************

2. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 3558951-3559004, mismatch: 0, identity: 1.0

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
******************************************************

3. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 3559029-3559082, mismatch: 0, identity: 1.0

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
******************************************************

4. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 3559107-3559160, mismatch: 0, identity: 1.0

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
******************************************************

5. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 3559185-3559238, mismatch: 1, identity: 0.981

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaggcaaaaagcggcccacttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
***************** ************************************

6. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 655408-655461, mismatch: 1, identity: 0.981

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagacaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
***.**************************************************

7. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 3917918-3917971, mismatch: 1, identity: 0.981

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaggcaaaaagcggcccccttggggagcagcaagccgaaggcgcggcgtggggg	Protospacer
*************************.****************************

8. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 4577974-4578019, mismatch: 1, identity: 0.978

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggccccctcggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*******************************************

9. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 4835029-4835074, mismatch: 1, identity: 0.978

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggccccctcggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*******************************************

10. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 4189786-4189831, mismatch: 1, identity: 0.978

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggccccctcggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*******************************************

11. spacer 3.1|2099140|54|NZ_LT907988|CRISPRCasFinder matches to position: 4189786-4189839, mismatch: 2, identity: 0.963

aaggcaaaaagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaggtaaaaagcggccccctcggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
****.***************.*********************************

12. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 655416-655461, mismatch: 2, identity: 0.957

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*********.*********************************

13. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 2273862-2273907, mismatch: 2, identity: 0.957

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaagcgccccctcggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
***  *****************************************

14. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 1569351-1569396, mismatch: 2, identity: 0.957

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aaacggcccccctggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
***********..*********************************

15. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 3558873-3558918, mismatch: 2, identity: 0.957

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*********.*********************************

16. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 3558951-3558996, mismatch: 2, identity: 0.957

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*********.*********************************

17. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 3559029-3559074, mismatch: 2, identity: 0.957

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*********.*********************************

18. spacer 4.1|2726165|46|NZ_LT907988|CRISPRCasFinder matches to position: 3559107-3559152, mismatch: 2, identity: 0.957

aaacggccccctcggggggcagcaagccgaaggcgcggcgtggggg	CRISPR spacer
aagcggcccccttggggggcagcaagccgaaggcgcggcgtggggg	Protospacer
**.*********.*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT907988_1	1.1\|624998\|30\|NZ_LT907988\|CRISPRCasFinder	624998-625027	30	LR606148	Rhizobium sp. Q54 genome assembly, plasmid: 5	449542-449571	7	0.767
NZ_LT907988_1	1.1\|624998\|30\|NZ_LT907988\|CRISPRCasFinder	624998-625027	30	NZ_CP030127	Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence	399516-399545	7	0.767
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NZ_CP048281	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence	672186-672217	7	0.781
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	555189-555220	7	0.781
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	2610-2641	8	0.75
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	3375-3406	8	0.75
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NZ_CP029357	Azospirillum sp. CFH 70021 plasmid unnamed2	4140-4171	8	0.75
NZ_LT907988_2	2.2\|1311730\|33\|NZ_LT907988\|PILER-CR	1311730-1311762	33	NZ_CP024924	Sphingomonas sp. Cra20 plasmid unnamed, complete sequence	126965-126997	8	0.758
NZ_LT907988_2	2.2\|1311730\|33\|NZ_LT907988\|PILER-CR	1311730-1311762	33	NZ_CP018821	Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence	28289-28321	8	0.758
NZ_LT907988_2	2.2\|1311730\|33\|NZ_LT907988\|PILER-CR	1311730-1311762	33	NZ_CP023451	Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p2, complete sequence	275-307	8	0.758
NZ_LT907988_2	2.2\|1311730\|33\|NZ_LT907988\|PILER-CR	1311730-1311762	33	NZ_AP018665	Sphingobium amiense strain DSM 16289 plasmid pSAMIE_2, complete sequence	196850-196882	8	0.758
NZ_LT907988_2	2.2\|1311730\|33\|NZ_LT907988\|PILER-CR	1311730-1311762	33	CP021185	Sphingomonas wittichii DC-6 plasmid pDC04, complete sequence	85647-85679	8	0.758
NZ_LT907988_2	2.2\|1311730\|33\|NZ_LT907988\|PILER-CR	1311730-1311762	33	NZ_CP014169	Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence	145837-145869	8	0.758
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	102640-102671	9	0.719
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	1218133-1218164	10	0.688
NZ_LT907988_2	2.1\|1311669\|32\|NZ_LT907988\|PILER-CR	1311669-1311700	32	NC_042084	Escherichia phage VB_EcoS-Golestan, complete genome	22396-22427	11	0.656

1. spacer 1.1|624998|30|NZ_LT907988|CRISPRCasFinder matches to LR606148 (Rhizobium sp. Q54 genome assembly, plasmid: 5) position: , mismatch: 7, identity: 0.767

aggggggcacgggttgccagtggggcggca	CRISPR spacer
acgaacccacgctttgccagtggggcggca	Protospacer
* *..  ****  *****************

2. spacer 1.1|624998|30|NZ_LT907988|CRISPRCasFinder matches to NZ_CP030127 (Indioceanicola profundi strain SCSIO 08040 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aggggggcacgggttgccagtggggcggca	CRISPR spacer
tgctgggcacgggctgccagtggcgcgccc	Protospacer
 *  *********.********* *** *

3. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NZ_CP048281 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248e, complete sequence) position: , mismatch: 7, identity: 0.781

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
agtcccggcaagacggcgggaagcgacaggga	Protospacer
 * .*  ******************* ***.*

4. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 7, identity: 0.781

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
agccccggcaagacggcgggaagcgacaggga	Protospacer
 * .*  ******************* ***.*

5. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
ctgtcgggcaagacggggggaagcgtgacggt	Protospacer
* **** ********* ******** .* *.

6. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
ctgtcgggcaagacggggggaagcgtgacggt	Protospacer
* **** ********* ******** .* *.

7. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
ctgtcgggcaagacggggggaagcgtgacggt	Protospacer
* **** ********* ******** .* *.

8. spacer 2.2|1311730|33|NZ_LT907988|PILER-CR matches to NZ_CP024924 (Sphingomonas sp. Cra20 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

acgccttcgttgccttcggtgaataggtcgcgc	CRISPR spacer
cagcggtcgttgccgtcggtgaacaggtcgcca	Protospacer
  **  ******** ********.*******

9. spacer 2.2|1311730|33|NZ_LT907988|PILER-CR matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 8, identity: 0.758

acgccttcgttgccttcggtgaataggtcgcgc	CRISPR spacer
cagcggtcgttgccgtcggtgaagaggtcgcca	Protospacer
  **  ******** ******** *******

10. spacer 2.2|1311730|33|NZ_LT907988|PILER-CR matches to NZ_CP023451 (Rhizorhabdus dicambivorans strain Ndbn-20 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

acgccttcgttgccttcggtgaataggtcgcgc	CRISPR spacer
cagcggtcgttgccgtcggtgaagaggtcgcca	Protospacer
  **  ******** ******** *******

11. spacer 2.2|1311730|33|NZ_LT907988|PILER-CR matches to NZ_AP018665 (Sphingobium amiense strain DSM 16289 plasmid pSAMIE_2, complete sequence) position: , mismatch: 8, identity: 0.758

acgccttcgttgccttcggtgaataggtcgcgc	CRISPR spacer
cagcggtcgttgccgtcggtgaagaggtcgcca	Protospacer
  **  ******** ******** *******

12. spacer 2.2|1311730|33|NZ_LT907988|PILER-CR matches to CP021185 (Sphingomonas wittichii DC-6 plasmid pDC04, complete sequence) position: , mismatch: 8, identity: 0.758

acgccttcgttgccttcggtgaataggtcgcgc	CRISPR spacer
cagcggtcgttgccgtcggtgaagaggtcgcca	Protospacer
  **  ******** ******** *******

13. spacer 2.2|1311730|33|NZ_LT907988|PILER-CR matches to NZ_CP014169 (Sphingomonas panacis strain DCY99 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

acgccttcgttgccttcggtgaataggtcgcgc	CRISPR spacer
cagcgatcgttgccgtcggtgaacaggtcgcca	Protospacer
  **  ******** ********.*******

14. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
gcgtcgcgcaagacggcggcaagcgctggctc	Protospacer
  ***************** *****  .*

15. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 10, identity: 0.688

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
gacccgcgcaaggcggcgggaagccaacgcgc	Protospacer
 . .********.*********** ** * .

16. spacer 2.1|1311669|32|NZ_LT907988|PILER-CR matches to NC_042084 (Escherichia phage VB_EcoS-Golestan, complete genome) position: , mismatch: 11, identity: 0.656

cggtcgcgcaagacggcgggaagcgaaaggaa	CRISPR spacer
gcgtcgcgcaacacggcaggaagcgtcttctg	Protospacer
  ********* *****.*******      .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1308035 : 1356501

Pseudomonas_phage(34.78%)

transposase,terminase,tail,protease,head,capsid,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098020852.1\|1308035_1309390_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.7e-80	54.0
WP_067757039.1\|1309585_1310311_+	hypothetical protein	NA	NA	NA	NA
WP_067757042.1\|1310342_1311560_+	threonine ammonia-lyase	NA	NA	NA	NA
WP_157929724.1\|1312556_1313330_+	DUF3865 domain-containing protein	NA	NA	NA	NA
WP_162292289.1\|1313789_1315118_+	MFS transporter	NA	NA	NA	NA
WP_067757051.1\|1315517_1315874_+	hypothetical protein	NA	NA	NA	NA
WP_067757054.1\|1315989_1316385_+	DUF1090 domain-containing protein	NA	NA	NA	NA
WP_082985424.1\|1316438_1316969_+	PIN domain-containing protein	NA	NA	NA	NA
WP_157929725.1\|1317080_1317230_-	hypothetical protein	NA	NA	NA	NA
WP_074046833.1\|1317373_1317637_-	hypothetical protein	NA	NA	NA	NA
WP_067757065.1\|1318158_1318905_-	hypothetical protein	NA	NA	NA	NA
WP_067757060.1\|1319189_1319396_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_067757062.1\|1319419_1319653_-	hypothetical protein	NA	NA	NA	NA
WP_098020853.1\|1319655_1320051_-	hypothetical protein	NA	NA	NA	NA
WP_098020854.1\|1320047_1320458_-	HNH endonuclease	A0A2P9JZS3	Salmonella_phage	2.6e-21	44.5
WP_098020855.1\|1320454_1320778_-	hypothetical protein	NA	NA	NA	NA
WP_098020856.1\|1320767_1321853_-	hypothetical protein	NA	NA	NA	NA
WP_067759396.1\|1322020_1322242_+	hypothetical protein	NA	NA	NA	NA
WP_067759393.1\|1322251_1322623_-	hypothetical protein	NA	NA	NA	NA
WP_067759387.1\|1322881_1323364_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	4.8e-43	54.3
WP_067759384.1\|1323366_1324317_-	ParB N-terminal domain-containing protein	A0A1B0YZX8	Pseudomonas_phage	8.1e-50	51.7
WP_067759381.1\|1324313_1324553_-	hypothetical protein	NA	NA	NA	NA
WP_157929726.1\|1324549_1324759_-	hypothetical protein	NA	NA	NA	NA
WP_067759375.1\|1326109_1326292_-	hypothetical protein	NA	NA	NA	NA
WP_067759372.1\|1326346_1326586_-	hypothetical protein	NA	NA	NA	NA
WP_157929728.1\|1327389_1327893_+	DNA primase	NA	NA	NA	NA
WP_067759370.1\|1327903_1328215_+	hypothetical protein	NA	NA	NA	NA
WP_067759367.1\|1328574_1329144_+	SocA family protein	NA	NA	NA	NA
WP_157929729.1\|1329143_1329554_+	hypothetical protein	NA	NA	NA	NA
WP_067759365.1\|1329555_1330614_-	S24 family peptidase	A0A2H4J6Q0	uncultured_Caudovirales_phage	1.1e-12	35.0
WP_082985513.1\|1330710_1330908_+	hypothetical protein	NA	NA	NA	NA
WP_157929730.1\|1330964_1331153_-	hypothetical protein	NA	NA	NA	NA
WP_067759358.1\|1331268_1331790_+	hypothetical protein	NA	NA	NA	NA
WP_162292290.1\|1331786_1332305_+	hypothetical protein	M4T3Q1	Psychrobacter_phage	5.4e-08	47.7
WP_067759353.1\|1332301_1332637_+	DUF4406 domain-containing protein	H2BD42	Pseudomonas_phage	7.0e-25	53.1
WP_098020858.1\|1332633_1333482_+	helix-turn-helix domain-containing protein	Q8W6P0	Burkholderia_virus	1.3e-43	42.7
WP_157929731.1\|1333456_1334188_+	hypothetical protein	NA	NA	NA	NA
WP_067759346.1\|1334184_1334526_+	DUF1064 domain-containing protein	A0A2K8HVS3	Pseudomonas_phage	1.3e-42	70.6
WP_067759343.1\|1334528_1334894_+	hypothetical protein	NA	NA	NA	NA
WP_074046857.1\|1335321_1335636_+	HNH endonuclease	D4FUN2	Pseudomonas_phage	3.4e-21	57.3
WP_067759338.1\|1335914_1336331_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_067759336.1\|1336308_1338078_+\|terminase	terminase large subunit	A0A0U4B0M7	Pseudomonas_phage	8.6e-263	73.8
WP_067759333.1\|1338074_1339373_+\|portal	phage portal protein	G0ZT36	Aeromonas_phage	5.7e-147	62.6
WP_067759331.1\|1339384_1340254_+\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	4.7e-81	57.6
WP_067759328.1\|1340264_1341443_+\|capsid	phage major capsid protein	A0A2H4PI18	Pseudomonas_phage	1.6e-103	54.2
WP_067759326.1\|1341493_1341715_+	hypothetical protein	NA	NA	NA	NA
WP_067759324.1\|1341717_1342047_+\|head,tail	phage gp6-like head-tail connector protein	Q9XJT1	Pseudomonas_phage	2.1e-21	58.3
WP_067759438.1\|1342046_1342421_+\|head,tail	head-tail adaptor protein	H2BDB4	Pseudomonas_virus	3.8e-27	50.8
WP_067759322.1\|1342423_1342645_+	hypothetical protein	NA	NA	NA	NA
WP_067759320.1\|1342641_1343127_+	hypothetical protein	NA	NA	NA	NA
WP_067759318.1\|1343126_1343498_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_162292291.1\|1343508_1344054_+	hypothetical protein	NA	NA	NA	NA
WP_067759313.1\|1344063_1344396_+	hypothetical protein	NA	NA	NA	NA
WP_067759311.1\|1344467_1344725_+	hypothetical protein	NA	NA	NA	NA
WP_067759309.1\|1344734_1347776_+\|tail	phage tail tape measure protein	B7SYE7	Stenotrophomonas_phage	1.3e-27	45.5
WP_067759306.1\|1347775_1348123_+	hypothetical protein	NA	NA	NA	NA
WP_067759304.1\|1348124_1348601_+	DUF1833 family protein	I7GYA2	Xanthomonas_virus	3.1e-10	28.7
WP_067759302.1\|1348637_1349072_+	hypothetical protein	NA	NA	NA	NA
WP_082985507.1\|1349498_1353362_+	hypothetical protein	I7HDJ4	Xanthomonas_virus	1.5e-41	28.3
WP_067759300.1\|1353364_1354030_+	hypothetical protein	NA	NA	NA	NA
WP_067759297.1\|1354029_1354320_+	hypothetical protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	3.8e-19	53.7
WP_067759295.1\|1354316_1354715_+	DUF4376 domain-containing protein	Q9MCI9	Enterobacteria_phage	7.6e-18	42.4
WP_067759293.1\|1354784_1355228_+	DUF882 domain-containing protein	C7BGD8	Burkholderia_phage	8.4e-34	59.9
WP_082985506.1\|1355235_1355565_+	hypothetical protein	NA	NA	NA	NA
WP_067759291.1\|1355545_1356016_+	hypothetical protein	NA	NA	NA	NA
WP_157929732.1\|1356027_1356501_+	DUF2514 family protein	A0A193GYI0	Enterobacter_phage	2.2e-08	50.0

DBSCAN-SWA_2

1998383 : 2015179

Burkholderia_virus(38.46%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067753044.1\|1998383_1999076_-	LexA family transcriptional regulator	H2BDH4	Pseudomonas_virus	4.2e-40	38.7
WP_067753047.1\|1999154_1999379_+	hypothetical protein	NA	NA	NA	NA
WP_067753050.1\|1999371_1999689_+	hypothetical protein	NA	NA	NA	NA
WP_173719650.1\|1999693_1999861_-	hypothetical protein	NA	NA	NA	NA
WP_067753053.1\|1999947_2000265_+	hypothetical protein	NA	NA	NA	NA
WP_067753056.1\|2000266_2000698_+	hypothetical protein	NA	NA	NA	NA
WP_157929741.1\|2000694_2000865_+	hypothetical protein	NA	NA	NA	NA
WP_067753059.1\|2000864_2001320_+	hypothetical protein	NA	NA	NA	NA
WP_067753061.1\|2001319_2002165_+	hypothetical protein	A0A2H4J0Z7	uncultured_Caudovirales_phage	8.9e-16	40.7
WP_067753063.1\|2002161_2003505_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	6.4e-77	39.8
WP_098020998.1\|2003549_2003894_+	RusA family crossover junction endodeoxyribonuclease	A0A088F6Y8	Sulfitobacter_phage	3.1e-07	61.9
WP_067753068.1\|2003896_2004307_+	hypothetical protein	NA	NA	NA	NA
WP_067753071.1\|2004303_2004786_+	hypothetical protein	Q775B8	Bordetella_phage	1.5e-28	50.3
WP_067753074.1\|2004775_2006209_+\|terminase	terminase	G9L6B8	Escherichia_phage	8.2e-155	60.5
WP_067753077.1\|2006483_2008130_+	hypothetical protein	Q6J1S2	Burkholderia_virus	2.2e-148	49.7
WP_098020885.1\|2008126_2008432_+	hypothetical protein	NA	NA	NA	NA
WP_157929742.1\|2008412_2009153_+	hypothetical protein	Q6J1S0	Burkholderia_virus	8.8e-36	43.5
WP_067753084.1\|2009171_2010182_+	hypothetical protein	K4PA76	Pseudomonas_phage	3.3e-86	51.8
WP_067753086.1\|2010236_2010683_+	hypothetical protein	W6MVK6	Pseudomonas_phage	3.9e-31	54.0
WP_067753089.1\|2010686_2010989_+	hypothetical protein	NA	NA	NA	NA
WP_067753092.1\|2011000_2011588_+	hypothetical protein	Q6J1R6	Burkholderia_virus	7.0e-52	55.5
WP_067753095.1\|2011587_2014149_+	hypothetical protein	Q6J1R5	Burkholderia_virus	8.1e-238	49.7
WP_067753098.1\|2014145_2014571_+	hypothetical protein	NA	NA	NA	NA
WP_067753101.1\|2014570_2015179_+	hypothetical protein	Q6J1R3	Burkholderia_virus	1.9e-20	58.3

DBSCAN-SWA_3

2251087 : 2259707

Moraxella_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067751040.1\|2251087_2252686_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	2.3e-57	28.6
WP_067751038.1\|2252772_2253363_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	9.2e-20	36.3
WP_067751064.1\|2253384_2253999_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_067751036.1\|2254010_2255303_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.3e-63	36.7
WP_067751033.1\|2255335_2256379_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-92	51.9
WP_067751031.1\|2256409_2257063_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_067751028.1\|2257216_2257963_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.5e-70	51.6
WP_082985203.1\|2257959_2258796_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.5e-34	45.9
WP_067751027.1\|2258813_2259707_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	2.3e-14	47.4

DBSCAN-SWA_4

3244340 : 3313010

Burkholderia_phage(23.53%)

integrase,plate,tRNA,terminase,tail,head,capsid,portal

attL 3253092:3253110|attR 3311784:3311802

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067752472.1\|3244340_3244841_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_067752469.1\|3244975_3245965_+	DUF4880 domain-containing protein	NA	NA	NA	NA
WP_067752466.1\|3246006_3246873_-	pirin family protein	NA	NA	NA	NA
WP_067752463.1\|3247015_3247918_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_067752460.1\|3247978_3249241_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_082985266.1\|3249237_3249786_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_067752454.1\|3249804_3250812_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_067752452.1\|3250923_3251928_-	transketolase family protein	NA	NA	NA	NA
WP_082985265.1\|3251924_3252824_-	transketolase	G9E5U1	Micromonas_pusilla_virus	1.9e-08	34.8
WP_067752450.1\|3252833_3253589_-	SDR family oxidoreductase	NA	NA	NA	NA
3253092:3253110	attL	NA	NA	NA	NA
WP_067752447.1\|3253737_3254667_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_157929768.1\|3254724_3254952_-	hypothetical protein	NA	NA	NA	NA
WP_067752444.1\|3255297_3256731_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_067752442.1\|3256723_3257419_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_067752439.1\|3257427_3258651_+	CoA transferase	NA	NA	NA	NA
WP_067752436.1\|3258647_3260234_+	propionyl-CoA carboxylase	NA	NA	NA	NA
WP_074046789.1\|3260233_3261025_+	ABC transporter permease	NA	NA	NA	NA
WP_067752433.1\|3261027_3261789_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.5e-27	38.6
WP_082985264.1\|3261825_3262788_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_067752430.1\|3262784_3263549_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_067752427.1\|3263538_3264354_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_067752424.1\|3264350_3265607_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_067752421.1\|3265603_3266353_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_067752418.1\|3266372_3267341_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_067752415.1\|3267462_3268269_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_067752407.1\|3268295_3269090_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	9.5e-12	31.9
WP_067752404.1\|3269230_3270190_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_067752401.1\|3270317_3270968_+	DMT family transporter	NA	NA	NA	NA
WP_157929769.1\|3271063_3271222_+	hypothetical protein	NA	NA	NA	NA
WP_067752398.1\|3271328_3272897_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	6.0e-42	48.4
WP_157929770.1\|3272930_3273797_-	hypothetical protein	NA	NA	NA	NA
WP_067752395.1\|3273786_3274332_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_067752392.1\|3274512_3274872_+	hypothetical protein	NA	NA	NA	NA
WP_157929771.1\|3274986_3276189_+	hypothetical protein	NA	NA	NA	NA
WP_067752386.1\|3276308_3277640_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_067752383.1\|3277910_3278387_+	hypothetical protein	NA	NA	NA	NA
WP_067752380.1\|3278729_3279092_+	hypothetical protein	NA	NA	NA	NA
WP_157929772.1\|3279131_3279296_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_067752377.1\|3279357_3279639_-	hypothetical protein	NA	NA	NA	NA
WP_082985261.1\|3279765_3280836_-\|portal	phage portal protein	K4NZV0	Burkholderia_phage	2.6e-121	63.3
WP_067752585.1\|3280832_3282584_-\|terminase	terminase	A4JWQ1	Burkholderia_virus	1.1e-212	64.6
WP_098020919.1\|3282744_3283608_+\|capsid	GPO family capsid scaffolding protein	A0A077K9W8	Ralstonia_phage	5.8e-55	45.4
WP_067754939.1\|3283637_3284678_+\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	1.0e-106	56.1
WP_067754936.1\|3284677_3285448_+	hypothetical protein	K4NX86	Burkholderia_phage	9.5e-33	38.6
WP_067754932.1\|3285541_3286012_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	3.3e-28	49.4
WP_067754929.1\|3286011_3286218_+\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	1.2e-14	55.4
WP_067754926.1\|3286221_3286545_+	hypothetical protein	NA	NA	NA	NA
WP_067754923.1\|3286541_3287081_+	lysozyme	NA	NA	NA	NA
WP_067754919.1\|3287077_3287596_+	DUF2514 family protein	A0A193GYI0	Enterobacter_phage	1.0e-06	35.4
WP_067754916.1\|3287592_3288027_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.6e-24	41.2
WP_067754913.1\|3288017_3288488_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	5.6e-28	46.3
WP_082985347.1\|3288540_3289173_+\|plate	phage baseplate assembly protein V	A0A2H4JFJ8	uncultured_Caudovirales_phage	2.1e-22	37.9
WP_082985349.1\|3289190_3289532_+	GPW/gp25 family protein	E5E3V5	Burkholderia_phage	1.4e-20	54.2
WP_067754906.1\|3289533_3290466_+\|plate	baseplate J/gp47 family protein	A0A077K9X9	Ralstonia_phage	1.2e-82	58.8
WP_067754902.1\|3290458_3291082_+\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	2.1e-54	58.1
WP_067754899.1\|3291078_3292203_+\|tail	phage tail protein	A0A0M3ULH6	Salmonella_phage	6.6e-43	59.7
WP_067754897.1\|3292221_3292638_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	6.5e-20	44.1
WP_067754894.1\|3292779_3293958_+\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	9.4e-149	66.2
WP_067754891.1\|3294022_3294541_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	4.3e-45	54.4
WP_067754889.1\|3294566_3294926_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	4.9e-16	48.3
WP_074046811.1\|3294934_3295048_+\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	7.1e-06	69.7
WP_067754886.1\|3295054_3297661_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	9.6e-186	46.1
WP_067754957.1\|3297687_3298140_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	3.3e-33	52.4
WP_067754884.1\|3298136_3299231_+	late control protein	R4JDM6	Burkholderia_phage	1.2e-81	46.5
WP_067754883.1\|3299346_3299805_-	helix-turn-helix domain-containing protein	A0A2H4J6Q0	uncultured_Caudovirales_phage	2.5e-12	48.2
WP_067754881.1\|3299891_3300110_+	helix-turn-helix domain-containing protein	A0A1P8DTF8	Proteus_phage	2.3e-08	45.3
WP_067754879.1\|3300106_3300382_+	ogr/Delta-like zinc finger family protein	R4JMD0	Burkholderia_phage	7.1e-07	42.2
WP_157929773.1\|3300444_3300753_+	hypothetical protein	NA	NA	NA	NA
WP_157929774.1\|3300880_3301081_+	hypothetical protein	NA	NA	NA	NA
WP_067754868.1\|3301080_3301371_+	hypothetical protein	NA	NA	NA	NA
WP_067754865.1\|3301367_3301703_+	DUF4406 domain-containing protein	A0A2K8I958	Pseudomonas_phage	1.5e-19	52.9
WP_067754862.1\|3301717_3301984_+	hypothetical protein	NA	NA	NA	NA
WP_074046810.1\|3302091_3302325_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_082985348.1\|3302362_3305155_+	toprim domain-containing protein	A0A1S5NPU9	Burkholderia_phage	2.0e-245	49.4
WP_067754854.1\|3305729_3307013_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.7e-90	43.8
WP_067754851.1\|3307391_3308657_-	aspartate kinase	NA	NA	NA	NA
WP_098021016.1\|3308709_3309807_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_067754848.1\|3309844_3310810_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_067754844.1\|3310864_3311509_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
WP_067754841.1\|3311543_3313010_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	2.4e-37	30.1
3311784:3311802	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT907988

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection