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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT596221 Yersinia pseudotuberculosis isolate NZYP4713 chromosome 1 10 crisprs cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,DEDDh,DinG,csa3 1 12 8 0
NZ_LT596222 Yersinia pseudotuberculosis isolate NZYP4713 plasmid 2 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_LT596221
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_1 561032-561317 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_2 1557395-1557506 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_3 1749085-1749713 TypeI-F I-F
10 spacers
cas1,cas3f,cas8f,cas5f,cas7f,cas6f

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_4 2740341-2741332 Orphan I-F
16 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_5 2865487-2865608 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_6 3346909-3346992 Orphan I-F
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_7 3609095-3609194 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_8 4324148-4324246 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_9 4566891-4567002 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT596221_10 4672735-4672825 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT596221_1 1.2|561205|53|NZ_LT596221|PILER-CR 561205-561257 53 NZ_LT596221.1 561318-561370 2 0.962

1. spacer 1.2|561205|53|NZ_LT596221|PILER-CR matches to position: 561318-561370, mismatch: 2, identity: 0.962

gtcaacgccactcatgccacaaaatcccgcttcggcgggtttttgctttggag	CRISPR spacer
gtcaacgccactcatgccacaaaatcccgctttggcgggtttttgctttgcag	Protospacer
********************************.***************** **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT596221_6 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder 3346933-3346968 36 NZ_CP028488 Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence 94279-94314 4 0.889
NZ_LT596221_3 3.6|1749414|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749414-1749445 32 AP018277 Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome 76706-76737 6 0.812
NZ_LT596221_4 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740550-2740581 32 NZ_CP037433 Lactobacillus plantarum strain EM plasmid pEM4, complete sequence 16919-16950 6 0.812
NZ_LT596221_4 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740550-2740581 32 NZ_CP037433 Lactobacillus plantarum strain EM plasmid pEM4, complete sequence 35450-35481 6 0.812
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693517 Marine virus AFVG_25M215, complete genome 22494-22525 6 0.812
NZ_LT596221_6 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder 3346933-3346968 36 NZ_CP054046 Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence 5758-5793 6 0.833
NZ_LT596221_6 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder 3346933-3346968 36 NZ_CP032488 Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence 55932-55967 6 0.833
NZ_LT596221_6 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder 3346933-3346968 36 NZ_CP032236 Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence 10438-10473 6 0.833
NZ_LT596221_6 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder 3346933-3346968 36 NZ_CP025802 Yersinia ruckeri strain SC09 plasmid pLT, complete sequence 50213-50248 6 0.833
NZ_LT596221_6 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder 3346933-3346968 36 NZ_CP054047 Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence 45314-45349 6 0.833
NZ_LT596221_6 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder 3346933-3346968 36 NZ_LN681230 Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence 40349-40384 6 0.833
NZ_LT596221_3 3.6|1749414|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749414-1749445 32 NC_014534 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence 199240-199271 7 0.781
NZ_LT596221_4 4.2|2740429|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740429-2740460 32 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 270051-270082 7 0.781
NZ_LT596221_4 4.2|2740429|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740429-2740460 32 NC_020062 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence 1676974-1677005 7 0.781
NZ_LT596221_4 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740550-2740581 32 NZ_CP009710 Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence 14677-14708 7 0.781
NZ_LT596221_4 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740550-2740581 32 NC_006154 Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence 7733-7764 7 0.781
NZ_LT596221_4 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740672-2740703 32 NZ_CP018742 Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence 160965-160996 7 0.781
NZ_LT596221_4 4.10|2740913|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740913-2740944 32 NZ_CP048628 Megamonas funiformis strain JCM 14723 plasmid putative_Mfuni1, complete sequence 43858-43889 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 NZ_LR214939 Mycoplasma salivarium strain NCTC10113 plasmid 2 692079-692110 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693094 Marine virus AFVG_25M147, complete genome 10185-10216 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693207 Marine virus AFVG_25M3, complete genome 10392-10423 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693435 Marine virus AFVG_25M146, complete genome 10188-10219 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693426 Marine virus AFVG_25M148, complete genome 10193-10224 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693153 Marine virus AFVG_25M248, complete genome 11346-11377 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693225 Marine virus AFVG_25M249, complete genome 11228-11259 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693604 Marine virus AFVG_25M287, complete genome 9692-9723 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MH327491 Marine virus AG-345-A17 Ga0172217_12 genomic sequence 181-212 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693306 Marine virus AFVG_25M45, complete genome 22283-22314 7 0.781
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MN693286 Marine virus AFVG_25M92, complete genome 20519-20550 7 0.781
NZ_LT596221_3 3.1|1749113|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749113-1749144 32 NZ_CP022661 Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-1, complete sequence 101334-101365 8 0.75
NZ_LT596221_3 3.1|1749113|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749113-1749144 32 NZ_CP022492 Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence 8849-8880 8 0.75
NZ_LT596221_3 3.1|1749113|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749113-1749144 32 NZ_CP022492 Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence 123010-123041 8 0.75
NZ_LT596221_3 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749534-1749565 32 GU071097 Synechococcus phage S-SSM5, complete genome 125694-125725 8 0.75
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 AP013801 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S23-C124, *** SEQUENCING IN PROGRESS *** 8403-8434 8 0.75
NZ_LT596221_8 8.1|4324181|33|NZ_LT596221|CRISPRCasFinder 4324181-4324213 33 NZ_KX274135 Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence 60674-60706 8 0.758
NZ_LT596221_3 3.3|1749233|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749233-1749264 32 NZ_CP013635 Rhizobium sp. N324 plasmid pRspN324e, complete sequence 243008-243039 9 0.719
NZ_LT596221_3 3.3|1749233|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749233-1749264 32 NC_011368 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence 1123208-1123239 9 0.719
NZ_LT596221_3 3.3|1749233|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749233-1749264 32 NZ_CP035000 Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence 125050-125081 9 0.719
NZ_LT596221_3 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749534-1749565 32 NZ_CP020003 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence 39669-39700 9 0.719
NZ_LT596221_3 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749534-1749565 32 MK905543 Vibrio phage USC-1, complete genome 129260-129291 9 0.719
NZ_LT596221_3 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749534-1749565 32 MK358448 Vibrio phage 5, complete genome 135485-135516 9 0.719
NZ_LT596221_3 3.9|1749594|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT 1749594-1749625 32 NZ_CP032703 Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence 47746-47777 9 0.719
NZ_LT596221_4 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740672-2740703 32 NZ_CP028373 Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence 40985-41016 9 0.719
NZ_LT596221_4 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740672-2740703 32 NZ_CP018901 Campylobacter coli strain YH502 plasmid pCOS502, complete sequence 49228-49259 9 0.719
NZ_LT596221_4 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740672-2740703 32 NZ_CP014345 Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence 19288-19319 9 0.719
NZ_LT596221_4 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740672-2740703 32 NZ_CP048772 Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence 31830-31861 9 0.719
NZ_LT596221_4 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2740672-2740703 32 AP013580 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C16-MedDCM-OCT-S43-C44, *** SEQUENCING IN PROGRESS *** 16672-16703 9 0.719
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 KU599879 Flavobacterium phage Fpv3, complete genome 48499-48530 9 0.719
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 KT876724 Flavobacterium phage FpV4, complete genome 48440-48471 9 0.719
NZ_LT596221_4 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR 2741273-2741304 32 MH616963 CrAssphage sp. isolate ctbg_1, complete genome 45800-45831 10 0.688

1. spacer 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder matches to NZ_CP028488 (Yersinia massiliensis strain GTA plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.889

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gcattgccgttgaagagatccgtcattggcttggcc	Protospacer
************************.*******  .*

2. spacer 3.6|1749414|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to AP018277 (Calothrix sp. NIES-4101 plasmid plasmid4 DNA, complete genome) position: , mismatch: 6, identity: 0.812

caagaaaagacacgccaaatatctg--agcagta	CRISPR spacer
gcagaaaatacacggcaaatatctgccagcag--	Protospacer
  ****** ***** **********  *****  

3. spacer 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037433 (Lactobacillus plantarum strain EM plasmid pEM4, complete sequence) position: , mismatch: 6, identity: 0.812

gtattggca---ctggttgcgtctgcggcgttgtt	CRISPR spacer
---tttgcaattctggttgcgtatgcggcgttctt	Protospacer
   ** ***   ********** ********* **

4. spacer 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP037433 (Lactobacillus plantarum strain EM plasmid pEM4, complete sequence) position: , mismatch: 6, identity: 0.812

gtattggca---ctggttgcgtctgcggcgttgtt	CRISPR spacer
---tttgcaattctggttgcgtatgcggcgttctt	Protospacer
   ** ***   ********** ********* **

5. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693517 (Marine virus AFVG_25M215, complete genome) position: , mismatch: 6, identity: 0.812

ttctatagaagatgcaaatgtaactgatgaca-	CRISPR spacer
atctatagaagttgcaaatgcaact-atttcac	Protospacer
 ********** ********.**** **  ** 

6. spacer 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder matches to NZ_CP054046 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gcattgccgttgaagagatccgccattggctgggcc	Protospacer
**********************.*.******   .*

7. spacer 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder matches to NZ_CP032488 (Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gcattgccgttgaagagatccgccattggctgggcc	Protospacer
**********************.*.******   .*

8. spacer 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder matches to NZ_CP032236 (Yersinia ruckeri strain NHV_3758 plasmid pYR4, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
ggatcgccgttgaagagatccgtcattggcttggcc	Protospacer
* **.*******************.*******  .*

9. spacer 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder matches to NZ_CP025802 (Yersinia ruckeri strain SC09 plasmid pLT, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
ggatcgccgttgaagagatccgtcattggcttggcc	Protospacer
* **.*******************.*******  .*

10. spacer 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder matches to NZ_CP054047 (Yersinia massiliensis strain 2011N-4075 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
gtattgctgttgaagagatccgtcattggcttggcc	Protospacer
*.*****.****************.*******  .*

11. spacer 6.1|3346933|36|NZ_LT596221|CRISPRCasFinder matches to NZ_LN681230 (Yersinia ruckeri strain CSF007-82 plasmid pYR3, complete sequence) position: , mismatch: 6, identity: 0.833

gcattgccgttgaagagatccgtcgttggctttttc	CRISPR spacer
ggatcgccgttgaagagatccgtcattggcttggcc	Protospacer
* **.*******************.*******  .*

12. spacer 3.6|1749414|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 7, identity: 0.781

caagaaaagacacgccaaatatctgagcagta	CRISPR spacer
cattaaaagactggccaaatatctgaggttta	Protospacer
**  *******  **************   **

13. spacer 4.2|2740429|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.781

atattgccgggccactgccatcaggtttttga	CRISPR spacer
atattgcctggcgactgccatcaggaagccga	Protospacer
******** *** ************   ..**

14. spacer 4.2|2740429|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 7, identity: 0.781

atattgccgggccactgccatcaggtttttga	CRISPR spacer
atactgccgggccaccgccatcaggaaaccga	Protospacer
***.***********.*********   ..**

15. spacer 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009710 (Yersinia pseudotuberculosis IP 32953 strain IP32953 plasmid pYAC_2, complete sequence) position: , mismatch: 7, identity: 0.781

gtattggcactggttgcgtctgcggcgttgtt	CRISPR spacer
gtattagcactggttgcgtctgcgtctgcggc	Protospacer
*****.****************** *  .* .

16. spacer 4.4|2740550|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NC_006154 (Yersinia pseudotuberculosis IP 32953 plasmid pYptb32953, complete sequence) position: , mismatch: 7, identity: 0.781

gtattggcactggttgcgtctgcggcgttgtt	CRISPR spacer
gtattagcactggttgcgtctgcgtctgcggc	Protospacer
*****.****************** *  .* .

17. spacer 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 7, identity: 0.781

aattagcaatagatttaaatatgtttaaagat	CRISPR spacer
atgcagctattgatttaaatatgtttaaaaaa	Protospacer
*  .*** ** ******************.* 

18. spacer 4.10|2740913|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048628 (Megamonas funiformis strain JCM 14723 plasmid putative_Mfuni1, complete sequence) position: , mismatch: 7, identity: 0.781

taaaatggctggttgaatactttgtg--gcaacc	CRISPR spacer
tttaatgtctcgttgaatactttgtgcatcaa--	Protospacer
*  **** ** ***************   ***  

19. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
taacatagaaaatggaaatgtaactgatgaag	Protospacer
*  .******.*** *************** .

20. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693094 (Marine virus AFVG_25M147, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
ttctattgtagatgcaaatgtaactacagcta	Protospacer
****** * ****************.  * .*

21. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693207 (Marine virus AFVG_25M3, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
ttcgatagtagatgcaaatgtaactacagcta	Protospacer
*** **** ****************.  * .*

22. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693435 (Marine virus AFVG_25M146, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
ttctattgtagatgcaaatgtaactacagcta	Protospacer
****** * ****************.  * .*

23. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693426 (Marine virus AFVG_25M148, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
ttctattgtagatgcaaatgtaactacagcta	Protospacer
****** * ****************.  * .*

24. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693153 (Marine virus AFVG_25M248, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
ttctattgtagatgcaaatgtaactacagcaa	Protospacer
****** * ****************.  *  *

25. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693225 (Marine virus AFVG_25M249, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
ttctattgtagatgcaaatgtaactacagcaa	Protospacer
****** * ****************.  *  *

26. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693604 (Marine virus AFVG_25M287, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
ttcgatagtagatgcaaatgtaactacagcta	Protospacer
*** **** ****************.  * .*

27. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MH327491 (Marine virus AG-345-A17 Ga0172217_12 genomic sequence) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca-	CRISPR spacer
atctatagaagttgcaaatgcaac-aatttcac	Protospacer
 ********** ********.*** .**  ** 

28. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693306 (Marine virus AFVG_25M45, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca-	CRISPR spacer
atctatagaagttgcaaatgcaac-gacttcac	Protospacer
 ********** ********.*** **.  ** 

29. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 7, identity: 0.781

ttctatagaagatgcaaatgtaactgatgaca-	CRISPR spacer
atctatagaagttgcaaatgcaac-gacttcac	Protospacer
 ********** ********.*** **.  ** 

30. spacer 3.1|1749113|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022661 (Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-1, complete sequence) position: , mismatch: 8, identity: 0.75

taatctggctggtgagaacatgattgcgattc	CRISPR spacer
gaatctggctggtgataaaatgatgacggatg	Protospacer
 ************** ** ***** .**. * 

31. spacer 3.1|1749113|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022492 (Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taatctggctggtgagaacatgattgcgattc	CRISPR spacer
gaatctggctggtgataaaatgatgacggatg	Protospacer
 ************** ** ***** .**. * 

32. spacer 3.1|1749113|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022492 (Salmonella enterica subsp. enterica serovar Saintpaul strain SA20031783 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taatctggctggtgagaacatgattgcgattc	CRISPR spacer
gaatctggctggtgataaaatgatgacggatg	Protospacer
 ************** ** ***** .**. * 

33. spacer 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to GU071097 (Synechococcus phage S-SSM5, complete genome) position: , mismatch: 8, identity: 0.75

gctaatgctaataaagaagttga-gcaaatgcg	CRISPR spacer
tctaatgcagataaagaagttgaggttactac-	Protospacer
 ******* .************* *. * *.* 

34. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to AP013801 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S23-C124, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

ttctatagaagatgcaaatgtaactgatgaca-	CRISPR spacer
atctatagaagttgcaaatgcaac-aacttcac	Protospacer
 ********** ********.*** .*.  ** 

35. spacer 8.1|4324181|33|NZ_LT596221|CRISPRCasFinder matches to NZ_KX274135 (Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence) position: , mismatch: 8, identity: 0.758

ctttggcatggggttatcagtaaaacgcgtaat	CRISPR spacer
caatggcatgaggttatcagcaaaacgattttt	Protospacer
*  *******.*********.******  *  *

36. spacer 3.3|1749233|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 9, identity: 0.719

aacaacgcgcggaagacaagaaggcggctctt	CRISPR spacer
gtcaacgcgcggaagaaaagatggcttcgtta	Protospacer
. ************** **** ***  * .* 

37. spacer 3.3|1749233|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 9, identity: 0.719

aacaacgcgcggaagacaagaaggcggctctt	CRISPR spacer
gtcaacgcgcggaagaaaagatggcttcgtta	Protospacer
. ************** **** ***  * .* 

38. spacer 3.3|1749233|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 9, identity: 0.719

aacaacgcgcggaagacaagaaggcggctctt	CRISPR spacer
gtcaacgcgcggaagaaaagatggcttcgtta	Protospacer
. ************** **** ***  * .* 

39. spacer 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020003 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gctaatgctaataaagaagttgagcaaatgcg	CRISPR spacer
ttaaatgctaataaagatgttgagaaagaagg	Protospacer
 . ************** ****** **. . *

40. spacer 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to MK905543 (Vibrio phage USC-1, complete genome) position: , mismatch: 9, identity: 0.719

gctaatgctaataaagaagttgagcaaatgcg	CRISPR spacer
gctaatggtaagaaagaagttgattacgtttt	Protospacer
******* *** *********** .* .* . 

41. spacer 3.8|1749534|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to MK358448 (Vibrio phage 5, complete genome) position: , mismatch: 9, identity: 0.719

gctaatgctaataaagaagttgagcaaatgcg	CRISPR spacer
gctaatggtaagaaagaagttgattacgtttt	Protospacer
******* *** *********** .* .* . 

42. spacer 3.9|1749594|32|NZ_LT596221|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cagcaaggaacatcgtcagaaaaaacactcta	CRISPR spacer
gaaagcagaacgtcggcagaaaaaacactctg	Protospacer
 *. . .****.*** ***************.

43. spacer 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

aattagcaatagatttaaatatgtttaaagat	CRISPR spacer
cattagcaatagatttagataagtgtttgttt	Protospacer
 ****************.*** ** *  .  *

44. spacer 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 9, identity: 0.719

aattagcaatagatttaaatatgtttaaagat	CRISPR spacer
cattagcaatagatttagataagtgtttgttt	Protospacer
 ****************.*** ** *  .  *

45. spacer 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

aattagcaatagatttaaatatgtttaaagat	CRISPR spacer
cattagcaatagatttagataagtgtttgttt	Protospacer
 ****************.*** ** *  .  *

46. spacer 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.719

aattagcaatagatttaaatatgtttaaagat	CRISPR spacer
cattagcaatagatttagataagtgtttgttt	Protospacer
 ****************.*** ** *  .  *

47. spacer 4.6|2740672|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to AP013580 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C16-MedDCM-OCT-S43-C44, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

aattagcaatagatttaaatatgtttaaagat	CRISPR spacer
ttttagcaatagatttaattattttaattgga	Protospacer
  **************** *** ** *  *. 

48. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to KU599879 (Flavobacterium phage Fpv3, complete genome) position: , mismatch: 9, identity: 0.719

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
aaaattagatgatgaaaatgtaactgatgaag	Protospacer
     **** **** *************** .

49. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to KT876724 (Flavobacterium phage FpV4, complete genome) position: , mismatch: 9, identity: 0.719

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
aaaattagatgatgaaaatgtaactgatgaag	Protospacer
     **** **** *************** .

50. spacer 4.16|2741273|32|NZ_LT596221|CRISPRCasFinder,CRT,PILER-CR matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 10, identity: 0.688

ttctatagaagatgcaaatgtaactgatgaca	CRISPR spacer
gcttgacaaagatggtaatgtaactgatgacc	Protospacer
 ..*.  .******  *************** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 483524 : 542446 55 uncultured_Mediterranean_phage(18.18%) holin,protease,tail NA
DBSCAN-SWA_2 655079 : 692230 46 Erwinia_phage(51.28%) lysis,integrase,portal,terminase,tRNA,plate,capsid,holin,head,tail attL 655925:655973|attR 686420:686468
DBSCAN-SWA_3 2480178 : 2531332 61 Salmonella_phage(41.18%) lysis,integrase,head,transposase,portal,capsid,holin,plate,tail attL 2470083:2470098|attR 2527006:2527021
DBSCAN-SWA_4 2823804 : 2890459 55 uncultured_Caudovirales_phage(25.0%) transposase,plate,protease NA
DBSCAN-SWA_5 3094910 : 3115955 23 Pseudomonas_phage(20.0%) plate,tail NA
DBSCAN-SWA_6 3543347 : 3623567 87 Salmonella_phage(27.66%) transposase,portal,coat,terminase,protease,holin NA
DBSCAN-SWA_7 3641343 : 3712681 66 Cronobacter_phage(57.14%) integrase,head,transposase,portal,terminase,tRNA,capsid,holin,plate,tail attL 3638329:3638346|attR 3695995:3696012
DBSCAN-SWA_8 3859207 : 3939122 60 Yellowstone_lake_phycodnavirus(18.18%) transposase,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_LT596222
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 38155 : 67000 26 Enterobacteria_phage(50.0%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage