CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT598658	Legionella pneumophila strain Lpm7613 isolate Lpm7613 plasmid 2	0 crisprs	PD-DExK,WYL	0	0	0	0
NZ_LT598657	Legionella pneumophila strain Lpm7613 isolate Lpm7613 chromosome 1	0 crisprs	RT,PD-DExK,DEDDh,cas3,WYL,csa3	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

940485 : 947324

Acinetobacter_phage(42.86%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014326803.1\|940485_941262_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.1e-57	48.6
WP_016356786.1\|941266_942289_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	4.6e-75	47.3
WP_014326805.1\|942266_942845_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.0e-55	53.2
WP_010946572.1\|942878_943604_-	LPS export ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.1e-17	28.3
WP_014326806.1\|943600_944110_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_014326807.1\|944090_944660_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_011945955.1\|944656_945184_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	A0A140XBD6	Dickeya_phage	1.4e-27	47.7
WP_010946576.1\|945197_946160_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.2e-38	34.1
WP_011215026.1\|946526_947324_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.7e-21	33.8

DBSCAN-SWA_2

1229311 : 1235248

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010946911.1\|1229311_1230385_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.8e-30	27.8
WP_010946912.1\|1230369_1230984_+	riboflavin synthase	A0A2I2L4R9	Orpheovirus	3.5e-22	38.4
WP_010946913.1\|1230980_1232189_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.4e-99	48.7
WP_010946914.1\|1232196_1232664_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	9.2e-23	49.1
WP_010946915.1\|1232789_1234427_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.3
WP_010946916.1\|1234423_1235248_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.8e-53	43.9

DBSCAN-SWA_3

2139046 : 2149170

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_010947735.1\|2139046_2140735_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	8.0e-16	30.4
WP_015444337.1\|2140866_2141874_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_010947737.1\|2141997_2143323_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	1.4e-47	31.2
WP_010947738.1\|2143341_2144490_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.3e-126	58.5
WP_015444336.1\|2144698_2145811_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.9e-51	35.2
WP_010947740.1\|2145906_2147046_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.6e-23	26.9
WP_015444335.1\|2147235_2149170_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.3e-147	49.6

DBSCAN-SWA_4

2178032 : 2228875

Wolbachia_phage(33.33%)

transposase,integrase

attL 2177943:2177992|attR 2223424:2223473

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2177943:2177992	attL	NA	NA	NA	NA
WP_014326935.1\|2178032_2179193_-\|integrase	site-specific integrase	A0A059VF45	Pseudomonas_phage	1.5e-85	45.8
WP_014326936.1\|2179527_2180532_-	DUF1016 family protein	Q9JMP5	Wolbachia_phage	8.0e-48	32.9
WP_027220144.1\|2180552_2181038_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016356949.1\|2181051_2182326_-	MFS transporter	NA	NA	NA	NA
WP_014326939.1\|2182303_2182816_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016356950.1\|2182857_2183541_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_016356951.1\|2183567_2184371_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_027220146.1\|2184454_2184694_+	hypothetical protein	NA	NA	NA	NA
WP_011947213.1\|2185045_2185441_+	DUF302 domain-containing protein	NA	NA	NA	NA
WP_014326944.1\|2185455_2187363_-	cation-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-143	45.5
WP_011947217.1\|2187932_2188103_-	hypothetical protein	NA	NA	NA	NA
WP_027220149.1\|2188367_2190503_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-145	42.0
WP_016356954.1\|2190579_2193729_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_011947220.1\|2193738_2194995_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_011947221.1\|2194991_2196236_-	TolC family protein	NA	NA	NA	NA
WP_016356955.1\|2196499_2197162_-	LexA family transcriptional regulator	NA	NA	NA	NA
WP_016356956.1\|2197346_2198219_+	hypothetical protein	NA	NA	NA	NA
WP_027220151.1\|2198181_2198547_+	hypothetical protein	NA	NA	NA	NA
WP_011947232.1\|2198566_2198764_+	carbon storage regulator	NA	NA	NA	NA
WP_011947233.1\|2198760_2199195_+	hypothetical protein	NA	NA	NA	NA
WP_016356957.1\|2199191_2199800_+	hypothetical protein	NA	NA	NA	NA
WP_011947235.1\|2199792_2200629_+	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_016356958.1\|2200630_2201089_+	integrating conjugative element protein	NA	NA	NA	NA
WP_016356959.1\|2201079_2201778_+	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_011947238.1\|2201787_2202111_+	hypothetical protein	NA	NA	NA	NA
WP_014843982.1\|2202113_2202377_+	hypothetical protein	NA	NA	NA	NA
WP_016356960.1\|2202379_2202766_+	hypothetical protein	NA	NA	NA	NA
WP_015961513.1\|2202774_2203125_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_014326960.1\|2203129_2203792_+	DUF2895 family protein	NA	NA	NA	NA
WP_016356961.1\|2203778_2204561_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_016356962.1\|2204557_2205871_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_016356963.1\|2205827_2206217_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_016356964.1\|2206227_2209002_+	conjugative transfer ATPase	NA	NA	NA	NA
WP_016356965.1\|2208976_2209972_+	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_016356966.1\|2209981_2211364_+	integrating conjugative element protein	NA	NA	NA	NA
WP_016356967.1\|2211365_2212934_+	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_027220156.1\|2212936_2213146_-	hypothetical protein	NA	NA	NA	NA
WP_027220157.1\|2213159_2213492_+	hypothetical protein	NA	NA	NA	NA
WP_014326970.1\|2213495_2215502_+	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
WP_016356968.1\|2215503_2215989_+	DUF1845 family protein	NA	NA	NA	NA
WP_025519966.1\|2216073_2216283_-	hypothetical protein	NA	NA	NA	NA
WP_014326973.1\|2216429_2217398_-	DUF3644 domain-containing protein	NA	NA	NA	NA
WP_016356969.1\|2218056_2218860_+	hypothetical protein	NA	NA	NA	NA
WP_016356970.1\|2218852_2219752_+\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_014326976.1\|2220087_2220348_+	hypothetical protein	NA	NA	NA	NA
WP_016356971.1\|2220410_2220917_+	antirestriction protein ArdA	U5P3Z5	Mycobacterium_phage	4.2e-21	39.5
WP_014326978.1\|2221018_2221636_-	hypothetical protein	NA	NA	NA	NA
WP_016356972.1\|2221668_2222160_-	hypothetical protein	NA	NA	NA	NA
WP_014326980.1\|2222170_2222989_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1S6L1V5	Vibrio_phage	1.4e-63	47.1
WP_015444229.1\|2223593_2225012_+\|transposase	IS4-like element ISLpn3 family transposase	Q9JMP3	Wolbachia_phage	2.3e-56	32.9
2223424:2223473	attR	NA	NA	NA	NA
WP_010947829.1\|2225044_2226220_-\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	5.2e-14	21.2
WP_010947830.1\|2226272_2227298_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_010947831.1\|2227456_2228875_+\|transposase	IS4-like element ISLpn4 family transposase	Q9JMP3	Wolbachia_phage	1.5e-55	32.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage