CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT601384	Escherichia coli isolate NCTC86EC chromosome I	9 crisprs	DEDDh,DinG,c2c9_V-U4,cas3,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	0	12	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT601384_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_1

593544-593661

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT601384_1

>merge|NZ_LT601384|1|593544-593661|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTTTACGC

>NZ_LT601384|1|1|593544-593661|CRISPRCasFinder
CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTTTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_000332037.1\|592316_593447_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_LT601384.1\|WP_000135040.1\|592062_592317_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_LT601384.1\|WP_000301050.1\|591358_592009_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_LT601384.1\|WP_066008829.1\|583027_583927_-\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_LT601384.1\|WP_000779105.1\|589819_590896_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_LT601384.1\|WP_001360244.1\|606638_611033_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_LT601384.1\|WP_000948731.1\|588456_589815_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_LT601384.1\|WP_001225852.1\|612687_613464_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_LT601384.1\|WP_066008830.1\|584119_585310_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_LT601384.1\|WP_066008831.1\|585306_586566_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_LT601384.1\|WP_000012305.1\|604186_605875_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_LT601384.1\|WP_001281242.1\|601410_604038_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_LT601384.1\|WP_001104549.1\|611033_612683_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_LT601384.1\|WP_000990765.1\|600541_601264_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_LT601384.1\|WP_000150333.1\|582829_583015_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
NZ_LT601384.1\|WP_000580275.1\|614753_616076_-\|TIGR00366-family-protein	unknown	unknown	gnl\|CDD\|280776
NZ_LT601384.1\|WP_001075164.1\|593680_595966_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_LT601384.1\|WP_068879430.1\|596661_600414_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_LT601384.1\|WP_001295211.1\|605871_606495_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_LT601384.1\|WP_000857257.1\|586555_588184_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_000332037.1\|592316_593447_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_LT601384.1\|WP_000135040.1\|592062_592317_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_LT601384.1\|WP_000301050.1\|591358_592009_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.86156e-158
NZ_LT601384.1\|WP_066008829.1\|583027_583927_-\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_LT601384.1\|WP_000779105.1\|589819_590896_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_LT601384.1\|WP_001360244.1\|606638_611033_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_LT601384.1\|WP_000948731.1\|588456_589815_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_LT601384.1\|WP_001225852.1\|612687_613464_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.17009e-153
NZ_LT601384.1\|WP_066008830.1\|584119_585310_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_LT601384.1\|WP_066008831.1\|585306_586566_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_LT601384.1\|WP_000012305.1\|604186_605875_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_LT601384.1\|WP_001281242.1\|601410_604038_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_LT601384.1\|WP_001104549.1\|611033_612683_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	3.75964e-127
NZ_LT601384.1\|WP_000990765.1\|600541_601264_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
NZ_LT601384.1\|WP_000150333.1\|582829_583015_-\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.35852e-30
NZ_LT601384.1\|WP_000580275.1\|614753_616076_-\|TIGR00366-family-protein	gnl\|CDD\|280776	pfam02667, SCFA_trans, Short chain fatty acid transporter. This family consists of two sequences annotated as short chain fatty acid transporters, however, there are no references giving details of experimental characterization of this function.	0
NZ_LT601384.1\|WP_001075164.1\|593680_595966_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_LT601384.1\|WP_068879430.1\|596661_600414_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_LT601384.1\|WP_001295211.1\|605871_606495_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
NZ_LT601384.1\|WP_000857257.1\|586555_588184_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0

>NZ_LT601384.1|WP_000332037.1|592316_593447_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_LT601384.1|WP_000135040.1|592062_592317_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_LT601384.1|WP_000301050.1|591358_592009_+|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_LT601384.1|WP_000779105.1|589819_590896_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_LT601384.1|WP_000948731.1|588456_589815_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERNGG
>NZ_LT601384.1|WP_000857257.1|586555_588184_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_LT601384.1|WP_066008831.1|585306_586566_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQLQGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRLGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_LT601384.1|WP_066008830.1|584119_585310_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYPFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_LT601384.1|WP_066008829.1|583027_583927_-|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMYEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCH
>NZ_LT601384.1|WP_000150333.1|582829_583015_-|hypothetical-protein
MTIAERLRQEGHQIGWQEGKLEGLHEQAIKIALRMLEQGFDRDQVLAATQLSEADLAANNH
>NZ_LT601384.1|WP_001075164.1|593680_595966_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_LT601384.1|WP_068879430.1|596661_600414_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHCTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_LT601384.1|WP_000990765.1|600541_601264_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_LT601384.1|WP_001281242.1|601410_604038_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_LT601384.1|WP_000012305.1|604186_605875_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_LT601384.1|WP_001295211.1|605871_606495_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_LT601384.1|WP_001360244.1|606638_611033_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVKQFRYPLWQAKPFEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVIGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALAKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTAHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQAIGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQTAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKMAQQSNIPVTVERQLYRLIPGEEEMSFILQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_LT601384.1|WP_001104549.1|611033_612683_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGVTKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_LT601384.1|WP_001225852.1|612687_613464_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_LT601384.1|WP_000580275.1|614753_616076_-|TIGR00366-family-protein
MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHIAGLIPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAARSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPVMTFFSSALINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF

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Crispr_ID: NZ_LT601384_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_2

1235052-1235175

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT601384_2

>merge|NZ_LT601384|2|1235052-1235175|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_LT601384|2|2|1235052-1235175|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_000212657.1\|1234611_1234917_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_LT601384.1\|WP_001182363.1\|1240494_1241706_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_LT601384.1\|WP_000007283.1\|1245728_1246310_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_LT601384.1\|WP_000493947.1\|1238374_1239016_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_LT601384.1\|WP_000817105.1\|1222893_1223898_+\|L,D-transpeptidase-LdtE	unknown	unknown	gnl\|CDD\|182294
NZ_LT601384.1\|WP_066009121.1\|1239055_1240204_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_LT601384.1\|WP_000102278.1\|1244071_1244161_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_LT601384.1\|WP_001070230.1\|1227141_1227768_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_LT601384.1\|WP_000648420.1\|1223961_1224198_-\|murein-lipoprotein-Lpp	unknown	unknown	gnl\|CDD\|185294
NZ_LT601384.1\|WP_001174940.1\|1236786_1238160_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_LT601384.1\|WP_000528342.1\|1226477_1226687_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_LT601384.1\|WP_000534271.1\|1235489_1236746_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NZ_LT601384.1\|WP_001310861.1\|1230605_1231274_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_LT601384.1\|WP_001069979.1\|1231270_1232056_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_LT601384.1\|WP_001273527.1\|1227788_1229891_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_LT601384.1\|WP_066009120.1\|1241818_1242751_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_LT601384.1\|WP_000101193.1\|1246437_1247253_-\|peptidoglycan-DD-endopeptidase-MepH	unknown	unknown	gnl\|CDD\|366353
NZ_LT601384.1\|WP_066009122.1\|1229903_1230542_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_LT601384.1\|WP_001295403.1\|1224508_1225921_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_LT601384.1\|WP_000190982.1\|1242747_1243773_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_000212657.1\|1234611_1234917_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_LT601384.1\|WP_001182363.1\|1240494_1241706_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_LT601384.1\|WP_000007283.1\|1245728_1246310_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_LT601384.1\|WP_000493947.1\|1238374_1239016_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_LT601384.1\|WP_000817105.1\|1222893_1223898_+\|L,D-transpeptidase-LdtE	gnl\|CDD\|182294	PRK10190, PRK10190, L,D-transpeptidase; Provisional.	3.95155e-85
NZ_LT601384.1\|WP_066009121.1\|1239055_1240204_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_LT601384.1\|WP_001070230.1\|1227141_1227768_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_LT601384.1\|WP_000648420.1\|1223961_1224198_-\|murein-lipoprotein-Lpp	gnl\|CDD\|185294	PRK15396, PRK15396, major outer membrane lipoprotein.	2.83509e-37
NZ_LT601384.1\|WP_001174940.1\|1236786_1238160_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_LT601384.1\|WP_000528342.1\|1226477_1226687_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_LT601384.1\|WP_000534271.1\|1235489_1236746_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_LT601384.1\|WP_001310861.1\|1230605_1231274_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
NZ_LT601384.1\|WP_001069979.1\|1231270_1232056_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.40835e-163
NZ_LT601384.1\|WP_001273527.1\|1227788_1229891_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_LT601384.1\|WP_066009120.1\|1241818_1242751_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_LT601384.1\|WP_000101193.1\|1246437_1247253_-\|peptidoglycan-DD-endopeptidase-MepH	gnl\|CDD\|366353	pfam00877, NLPC_P60, NlpC/P60 family. The function of this domain is unknown. It is found in several lipoproteins.	7.77757e-47
NZ_LT601384.1\|WP_066009122.1\|1229903_1230542_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.56576e-119
NZ_LT601384.1\|WP_001295403.1\|1224508_1225921_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_LT601384.1\|WP_000190982.1\|1242747_1243773_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0

>NZ_LT601384.1|WP_000212657.1|1234611_1234917_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_LT601384.1|WP_001069979.1|1231270_1232056_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_LT601384.1|WP_001310861.1|1230605_1231274_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_LT601384.1|WP_066009122.1|1229903_1230542_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEVQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_LT601384.1|WP_001273527.1|1227788_1229891_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_LT601384.1|WP_001070230.1|1227141_1227768_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_LT601384.1|WP_000528342.1|1226477_1226687_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_LT601384.1|WP_001295403.1|1224508_1225921_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_LT601384.1|WP_000648420.1|1223961_1224198_-|murein-lipoprotein-Lpp
MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK
>NZ_LT601384.1|WP_000817105.1|1222893_1223898_+|L,D-transpeptidase-LdtE
MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ
>NZ_LT601384.1|WP_000534271.1|1235489_1236746_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFIVGNINLNGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_LT601384.1|WP_001174940.1|1236786_1238160_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRASR
>NZ_LT601384.1|WP_000493947.1|1238374_1239016_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_LT601384.1|WP_066009121.1|1239055_1240204_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNGLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_LT601384.1|WP_001182363.1|1240494_1241706_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_LT601384.1|WP_066009120.1|1241818_1242751_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQKNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_LT601384.1|WP_000190982.1|1242747_1243773_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_LT601384.1|WP_000102278.1|1244071_1244161_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_LT601384.1|WP_000007283.1|1245728_1246310_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA
>NZ_LT601384.1|WP_000101193.1|1246437_1247253_-|peptidoglycan-DD-endopeptidase-MepH
MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKADKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_LT601384_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_3

1926548-1926683

Orphan

Consensus_repeat	Method
CGTGTATCTGGCATTGTCATTTTCCTCCGGGTTGCAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT601384_3

>merge|NZ_LT601384|3|1926548-1926683|CRISPRCasFinder
CGTGTATCTGGCATTGTCATTTTCCTCCGGGTTGCAGATATGCTGCAATCCTAAAGGAGTGAAGTTTTTCTGTGAAGATGAGTTCACCGTAACGTGACCGTGTATCTGGCATTGTCATTTTCCTCCAGGTTGCAGA

>NZ_LT601384|3|3|1926548-1926683|CRISPRCasFinder
CGTGTATCTGGCATTGTCATTTTCCTCCGGGTTGCAGA	TATGCTGCAATCCTAAAGGAGTGAAGTTTTTCTGTGAAGATGAGTTCACCGTAACGTGAC
CGTGTATCTGGCATTGTCATTTTCCTCCAGGTTGCAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_066008901.1\|1938032_1940120_-\|bifunctional-siderophore-receptor/adhesin-Iha	unknown	unknown	gnl\|CDD\|139606
NZ_LT601384.1\|WP_000544830.1\|1934762_1935560_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|181681
NZ_LT601384.1\|WP_053886252.1\|1923616_1924042_-\|IS66-family-insertion-sequence-hypothetical-protein	unknown	unknown	gnl\|CDD\|225511
NZ_LT601384.1\|WP_001186192.1\|1915134_1915611_-\|RadC-family-protein	unknown	unknown	gnl\|CDD\|224914
NZ_LT601384.1\|WP_023910471.1\|1923134_1923317_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT601384.1\|WP_001539577.1\|1928215_1928659_-\|Dr-fimbrial-tip-invasin-DraD	unknown	unknown	gnl\|CDD\|350652
NZ_LT601384.1\|WP_023910464.1\|1915626_1916112_-\|antirestriction-protein	unknown	unknown	gnl\|CDD\|377006
NZ_LT601384.1\|WP_066009555.1\|1926966_1927473_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT601384.1\|WP_000700580.1\|1935793_1936021_+\|F1845-fimbrial-adhesin-operon-transcriptional-regulator-DaaF	unknown	unknown	gnl\|CDD\|368065
NZ_LT601384.1\|WP_001330421.1\|1931297_1932095_-\|Dr-fimbrial-biogenesis-chaperone-DraB	unknown	unknown	gnl\|CDD\|185146
NZ_LT601384.1\|WP_053886233.1\|1936305_1937214_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_LT601384.1\|WP_066008899.1\|1933590_1934763_+\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_LT601384.1\|WP_000203541.1\|1918427_1919333_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|316504
NZ_LT601384.1\|WP_066008961.1\|1919329_1921714_-\|dynamin-family-protein	unknown	unknown	gnl\|CDD\|182123
NZ_LT601384.1\|WP_000527471.1\|1927670_1927844_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT601384.1\|WP_001234682.1\|1916202_1917021_-\|DUF945-domain-containing-protein	unknown	unknown	gnl\|CDD\|377596
NZ_LT601384.1\|WP_031326669.1\|1925857_1926238_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_LT601384.1\|WP_001209230.1\|1932434_1932740_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377022
NZ_LT601384.1\|WP_068879452.1\|1921931_1922804_-\|GTPase-family-protein	unknown	unknown	gnl\|CDD\|226124
NZ_LT601384.1\|WP_053886242.1\|1917360_1918431_-\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|224666

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_066008901.1\|1938032_1940120_-\|bifunctional-siderophore-receptor/adhesin-Iha	gnl\|CDD\|139606	PRK13486, PRK13486, TonB-dependent receptor.	0
NZ_LT601384.1\|WP_000544830.1\|1934762_1935560_+\|ATP-binding-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	1.84228e-92
NZ_LT601384.1\|WP_053886252.1\|1923616_1924042_-\|IS66-family-insertion-sequence-hypothetical-protein	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.7186e-11
NZ_LT601384.1\|WP_001186192.1\|1915134_1915611_-\|RadC-family-protein	gnl\|CDD\|224914	COG2003, RadC, DNA repair proteins [DNA replication, recombination, and repair].	5.56421e-68
NZ_LT601384.1\|WP_023910464.1\|1915626_1916112_-\|antirestriction-protein	gnl\|CDD\|377006	pfam03230, Antirestrict, Antirestriction protein. This family includes various protein that are involved in antirestriction. The ArdB protein efficiently inhibits restriction by members of the three known families of type I systems of E. coli.	2.2506e-45
NZ_LT601384.1\|WP_001539577.1\|1928215_1928659_-\|Dr-fimbrial-tip-invasin-DraD	gnl\|CDD\|350652	cd18776, AfaD-like, AfaD and similar proteins. This subfamily consists of Escherichia coli AfaD, Salmonella SafD, and similar proteins. The afa gene clusters encode an afimbrial adhesive sheath produced by Escherichia coli. The adhesive sheath is composed of two proteins, AfaD and AfaE, which are independently exposed at the bacterial cell surface. AfaE is required for bacterial adhesion to HeLa cells and AfaD for the uptake of adherent bacteria into these cells. SafD is the minor subunit of Saf pili, which are often found in clinical isolates of Salmonella and are assembled by the chaperone-usher secretion pathway. In addition to safD, the saf operon is also composed of safA (major subunit), safB (periplasmic chaperone), and safC (outer membrane usher). Also included is the enteroaggregative Escherichia coli AAF/IV pilus tip protein, which is implicated in adhesion as well. During fimbria/pili assembly, polymerization occurs when the N-terminal extension (NTE) of one monomer is inserted into an adjacent monomer, providing the final beta strand or G-strand, to complete the Ig-like fold, in a mechanism called the donor-strand complementation (DSC) or donor-strand exchange (DSE).	9.42265e-49
NZ_LT601384.1\|WP_068879452.1\|1921931_1922804_-\|GTPase-family-protein	gnl\|CDD\|226124	COG3596, COG3596, Predicted GTPase [General function prediction only].	6.42511e-142
NZ_LT601384.1\|WP_000700580.1\|1935793_1936021_+\|F1845-fimbrial-adhesin-operon-transcriptional-regulator-DaaF	gnl\|CDD\|368065	pfam04703, FaeA, FaeA-like protein. This family represents a number of fimbrial protein transcription regulators found in Gram-negative bacteria. These proteins are thought to facilitate binding of the leucine-rich regulatory protein to regulatory elements, possibly by inhibiting deoxyadenosine methylation of these elements by deoxyadenosine methylase.	8.18674e-34
NZ_LT601384.1\|WP_053886233.1\|1936305_1937214_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	6.03067e-100
NZ_LT601384.1\|WP_066008899.1\|1933590_1934763_+\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	6.56017e-53
NZ_LT601384.1\|WP_000203541.1\|1918427_1919333_-\|chemotaxis-protein	gnl\|CDD\|316504	pfam13990, YjcZ, YjcZ-like protein. This family of proteins is functionally uncharacterized. The family includes the YjcZ protein from E. coli. This family of proteins is found in enteric bacteria. Proteins in this family are approximately 300 amino acids in length. There are two conserved sequence motifs: FGD and MPR.	1.58958e-66
NZ_LT601384.1\|WP_066008961.1\|1919329_1921714_-\|dynamin-family-protein	gnl\|CDD\|182123	PRK09866, PRK09866, clamp-binding protein CrfC.	1.26965e-155
NZ_LT601384.1\|WP_001234682.1\|1916202_1917021_-\|DUF945-domain-containing-protein	gnl\|CDD\|377596	pfam06067, DUF932, Domain of unknown function (DUF932). Family of prokaryotic proteins with unknown function. Contains a number of highly conserved polar residues that could suggest an enzymatic activity.	5.32152e-53
NZ_LT601384.1\|WP_031326669.1\|1925857_1926238_-\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	3.18342e-45
NZ_LT601384.1\|WP_001209230.1\|1932434_1932740_-\|hypothetical-protein	gnl\|CDD\|377022	pfam03333, PapB, Adhesin biosynthesis transcription regulatory protein. This family includes PapB, DaaA, FanA, FanB, and AfaA.	5.40926e-48
NZ_LT601384.1\|WP_001330421.1\|1931297_1932095_-\|Dr-fimbrial-biogenesis-chaperone-DraB	gnl\|CDD\|185146	PRK15224, PRK15224, pili assembly chaperone PapD.	1.14321e-82
NZ_LT601384.1\|WP_053886242.1\|1917360_1918431_-\|patatin-like-phospholipase-family-protein	gnl\|CDD\|224666	COG1752, RssA, Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only].	6.49256e-49

>NZ_LT601384.1|WP_031326669.1|1925857_1926238_-|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLTPDNVWLAVKPVDMRAGIDTLTQYVQNELNAAWHDGAAFVFTNKARSRIKVLRWDKHGVWLCTRRLHRGSFRWPRKGDATWHLTPDEFHWLVCGVDWQQVNGHDLAKWLPETPSAYTQNTAITQ
>NZ_LT601384.1|WP_053886252.1|1923616_1924042_-|IS66-family-insertion-sequence-hypothetical-protein
MELQDWRKEPRKKYSNEFKLRMVELASQPGACVAQIARENGVNDNVIFKWLRLWQNEGRISRRLPVTTSSDTGVELLPVEITPDEPKEPVVAIAPSLSTTTQTRVSASSCKVEFRHGNMTLENPSPELLTVLIRELSGRGR
>NZ_LT601384.1|WP_023910471.1|1923134_1923317_+|hypothetical-protein
MYNCGESYSEYDISLSDDENYNDDYYRERPCPGEVFGYDNTEDNDEAASDYALKTNENSD
>NZ_LT601384.1|WP_068879452.1|1921931_1922804_-|GTPase-family-protein
MNPSDAIEAIEKPLASLPYSLSRHILEHLRKLTSHEPVPGIMGKSGAGKSSLCNALFQGEVTPVSDVHAGTREVKRFRLSGNGHSMIITDLPGVGESRDRDAEYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILHRGHQQVLFVVTQADKTEPCHEWDMAGIQPSPAQAQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALPDHAASPLMTRLQDELRTESVRAQAREQFTGAVDRIFDTAESVCVASVARTVLRAVRDTVVSVARAVWNWIFF
>NZ_LT601384.1|WP_066008961.1|1919329_1921714_-|dynamin-family-protein
MHEKNIALLCDEADRLLQLNINLLRQMVEEPDVLSDSKNENRLLFDKQKALKRIEELEGEQIKTARREMVLAVVGTMKAGKSTTINAIVGQEILPNRNRPMTSVPTLIRHVPGKTEPVLHLEHIQPVRNLLITLQQKLDTPAGQQVAQTLQQTGDTCELLDILANDGWLKNEYHGEEEIFTGLASLNDLVRLAAAMGSEFPFDEYAEVQKLPVIDVAFSHLVGMDACQGTLTLLDTPGPNEAGQPQMEMMMRDQLQKASAVLAVMDYTQMNSKADEEVRKELNAIADVSAGRLFVLVNKFDEKDRNGDGADAVRQKVPAMLNSDVLPASRVYPGSSRQAYLANRALHELRKNGALPVDEAWVDDFIREAFGPMVEEDDWKDSTKVNKKAEKLWNISLIDQLITEVIQSSHSRAAALAVDSAAAKLMQNAENVSEYLSLRHQGLQQSIQSLQAHITSLLADIQEIEECQNQVTGDVRMAMEDINTKTGELLTKVCASLEEELNDYFRSGKRKEQQMLEEENSAQPRERNAFAFFHDIFGTGNQHDRMRDFDPDSPEIKFSDRRAALELMTQIESTVTSLHREAEAQFRPELEKIVSGIETGFRGTALYATENIAGRINARLEDEGFTVKISFPAVSQLQTRLAVKINLSALMEERTETVTRRRRQSGVWGTVCRWFGTSDLGWENYDEDVSRSVININKVREEVMSLTRAYFGELQASTEQDINQPVRQEIDAFFCAFREKVEQLRNTLIQSSEDHKRDQQAQERLTGRLQALNERVPELITDSKALREELETML
>NZ_LT601384.1|WP_000203541.1|1918427_1919333_-|chemotaxis-protein
MTSPFIQQIADNRVCQVLTCLPEKFVVDFANGIDVAQEHIRTAGERTFFRRLKEGLTGEGAARQNAINASLAQGVEASLRWLTEMTTSLATTNYAITRVNDRVSSLVSDTARLAHYSADTREQLLTLADQVHHKLNHLEEKLHRVDQVQRAQLHLEQIFSWWSAGRYASFSPAGRCYVALEELRWGAFGDVIRQGETGQVNQLLDILRHKALTQMAQESGGSATVRLNTLDWLGGQGREQADNEWHDAINWLGDWCSEEQHPVIWSTTQAAEHLPVRMPRLCSAERLSESMVDEIFQKGAA
>NZ_LT601384.1|WP_053886242.1|1917360_1918431_-|patatin-like-phospholipase-family-protein
MSTEMKTGLVLSGGGAVGAYQAGVVKALAECGTQISMVSGTSIGAFNGAIIAASPDLSEAAVRLEALWEHLGNNQVLSVNRLVYFSLLKKLFQAMNLCQIPGRAGALLTTLLRHISTINGFDNLMAQPLLSDEPLTALMDHYLDTDALADGLPLYVSLYPTEGGMQDIIDCIRAELGVGTTKNAVFQHIQSLPRGQQKEALLASAALPLLFRPREVQGTMFGDGGMGGWRNMQGNTPVTPLVDAGCNMVIVTHLSDGSLWDRQAFPDTTILEIRPRKRLKYAGDGGNSGGLLSFTSAHTDAWRQRGYEDTMLAMEHIRKPLAARQALTRSEAVLQKSLDITEEADLALRNAMARIK
>NZ_LT601384.1|WP_001234682.1|1916202_1917021_-|DUF945-domain-containing-protein
MRLASRFGYANQIRRDRPLTHEELMRHVPSIFGENRHTSRSEHYAYIPTITVLENLQQEGFQPFFACQTRVRDQSRREYTKHMLRLRRAGQITGQHVPEIILLNSHDGSSSYQMLPGYFRAICTNGLVCGQSLGELRVPHRGNVVDRVIEGAYEVVGVFDRIEEKRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQTIQENMLKGGISGRSAKGKRIHTRAIHSIDTDIKLNRALWVMAETLLESMR
>NZ_LT601384.1|WP_023910464.1|1915626_1916112_-|antirestriction-protein
MTTVSHNSTTPSVSVTTASGNNPPQLVATPVPDEQRISFWPQHFGLIPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGNRAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPEYDAIMRIID
>NZ_LT601384.1|WP_001186192.1|1915134_1915611_-|RadC-family-protein
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL
>NZ_LT601384.1|WP_066009555.1|1926966_1927473_-|hypothetical-protein
MKNLKTLGLAISIAAALTSSVYAGPSNQAPAVTESGKFTVENACNITQQFQGEAGLKVGGIALGTRVAQITVGLEGCVSQIYFTPSGQSVRADGKLQGVGKTGRQFLLGLAAQGATALQDNGRWYMVTDQQIDDRNKFTFLIASEENVTDPNYADEYTVHYELGTWSK
>NZ_LT601384.1|WP_000527471.1|1927670_1927844_-|hypothetical-protein
MGNLPVGSRGLYKGKKRSAGMNELRHPGSTQMTRTGQAHRGGEHRLNTGPPDWQTVE
>NZ_LT601384.1|WP_001539577.1|1928215_1928659_-|Dr-fimbrial-tip-invasin-DraD
MNGSIRKMMRVTCGMLLMVMSGVSQAAELHLESRGGSGTQLRDGAKVATGRIICREAHTGFHVWMNERQVDGRAERYVVQSKDGRHELRVRTGGDGWSPVKGEGGKGVSRPGQEEQVFFDVMADGNQDIAPGEYRFSVGGACVVPQE
>NZ_LT601384.1|WP_001330421.1|1931297_1932095_-|Dr-fimbrial-biogenesis-chaperone-DraB
MKMRAVAVFTGMLTGVLSVTGLLSAGAYAAGGEGNMSASATETNARVFSLHLGATRVVYNPASSGETLTVINDQDYPMLVQSEVLSEDQKSPAPFVVTPPLFRLDGQQSSRLRIVRTGGEFPSDRESLQWICVKGIPPKEDDRWAEGKDGEKKADKVSLNVQLSVSSCIKLFVRPPAVKGRPDDVAGKVEWQRAGNRLKGVNPTPFYINLSTLTVGGKEVKEREYIAPFSSREYPLPAGASGKVQWKVITDYGGTSKQFEAELKG
>NZ_LT601384.1|WP_001209230.1|1932434_1932740_-|hypothetical-protein
MRERYLYLADTPQGILMSGQVPEYQFWLLAEISPVHSEKVINALRDYLVMGYNRMEACGRHGVSPGYFSGALKRFQRVSQTVYRLVPFYFPEAGHEVHRGE
>NZ_LT601384.1|WP_066008899.1|1933590_1934763_+|IS21-family-transposase
MLSREDFYMIKQMRQQGAYIVDIATQIGCSERTVRRYLKYPEPPARKTRHKMVKLKPFMDYIDMRLAENVWNSEVIFAEIKAMGYTGGRSMLRYYIQPKRKMRPSKRTVRFETQPGYQLQHDWGEVEVEVAGQRCKVNFAVNTLGFSRRFHVFAAPKQDAEHTYESLVRAFRYFGGCVKTVLVDNQKAAVLKNNNGKVVFNSGFLLLADHYNFLPRACRPRRARTKGKVERMVKYLKENFFVRYRRFDSFTHVNQQLEQWIADVADKRELRQFKETPEQRFALAQEHLQPLPDTDFDTSYFDIRHVSRDSYIEVGGNRYSVPEALCGQPVSIRISLDDELRIYSNEKLVASHRLCSASSGWQTVPEHHAPLWQQVSQVEHRPLSAYEELL
>NZ_LT601384.1|WP_000544830.1|1934762_1935560_+|ATP-binding-protein
MHELEVLLSRLKMEHLSYHVESLLEQAAKKELNYREFLCMALQQEWNGRHQRGMESRLKQARLPWVKTLEQFDFTFQPGIDRKVVRELAGLAFVERSENVILLGPPGVGKTHLAIALGVKAVDAGHRVLFMPLDRLIATLMKAKQENRLERQLQQLSYARVLILDEIGYLPMNREEASLFFRLLNRRYEKASIILTSNKGFADWGEMFGDHVLATAILDRLLHHSTTLNIKGESYRLKEKRKAGVLTKNTTPISDDEMVKSGQHQ
>NZ_LT601384.1|WP_000700580.1|1935793_1936021_+|F1845-fimbrial-adhesin-operon-transcriptional-regulator-DaaF
MKINKLTLNERKNDILSYFGEINAPCRTSEVAEHLGVSAYQARHYLQCLEKEGKIKRSPVRRGASTLWEISSIPP
>NZ_LT601384.1|WP_053886233.1|1936305_1937214_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MSRKKDKNTSTPHDAAFRAFMASPEVARDFVSLHLPEEYRQLCDLSTLRLEPCTFVDQELKQYACDALFSMKTVSGEDGYVYCLVEHQSTENAYMAFRMLRYAVAAMQRHFEAHKVLPLVIPVLFYHGERSPYPYSMNWLDGFSDPDIAAKIYTRPFHLVDVTVMDDDEIMHHRRLGALTLLMKHSRSRDLMLQMDRLVQLIQDSLNEELAQVLFHYLLNGSEHVTVTFLQTLAQRLPQHEDNIMTLAERIEQKGIAKGIEQGKLEGKLEGKLEGKLETARNMLNAGMDRQTVLQMTGLSND
>NZ_LT601384.1|WP_066008901.1|1938032_1940120_-|bifunctional-siderophore-receptor/adhesin-Iha
MRITTLASVVIPCLGFSASSMAAEDVMIVSASGYEKKLTNAAASVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDGVRQGGSGDVTPNGFSAMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKNADKWLSSVNAGLNLQESNKWGNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSLSDTAATRIPYPTESQNYNLGARLDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGYDRTLRYERNKISAGYDHTFTFGTWKSYLNWNETENKGRELVRSVLKRDKWGLAGQPRELKESNLILNSLLLTPLGESHLVTVGGEFQSSSMKDGVVLASTGETFRQKSWSVFAEDEWHLTDALALTAGSRYEHHEQFGGHFSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLHKGISGVSGQGKTNLLGNPDLKPEESVSYEAGVYYDNPAGLNANVTGFMTDFSNKIVSYSINDNTNSYVNSGKARLHGVEFAGTLPLWSEDVTLSLNYTWTRSEQRDGDNKGAPLSYTPEHMVNAKLNWQITEEVASWLGARYRGKTPRFTQNYSSLSAVQKKVYDGKGEYLKAWTVVDAGLSWKMTDALTLNVAVNNLLNKDYSDVSLYSAGRGTLYAGDYFQTGASTTGYVIPERNYWMSLNYQF

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Click the colored protein region to show detailed information

Crispr_ID: NZ_LT601384_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_4

1980191-1980282

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT601384_4

>merge|NZ_LT601384|4|1980191-1980282|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_LT601384|4|4|1980191-1980282|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_000209894.1\|1986014_1986614_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_LT601384.1\|WP_000191701.1\|1973533_1974172_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_LT601384.1\|WP_000024560.1\|1985557_1985863_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_LT601384.1\|WP_001044279.1\|1981587_1982829_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_LT601384.1\|WP_000420621.1\|1984637_1985558_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_LT601384.1\|WP_001326838.1\|1978574_1979903_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_LT601384.1\|WP_001340618.1\|1974459_1975551_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_LT601384.1\|WP_001393558.1\|1975550_1976243_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_LT601384.1\|WP_001120125.1\|1990458_1991151_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_LT601384.1\|WP_001326840.1\|1969531_1973494_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_LT601384.1\|WP_001264933.1\|1991123_1992152_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801
NZ_LT601384.1\|WP_001126780.1\|1976254_1976641_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_LT601384.1\|WP_001001176.1\|1977458_1978049_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_LT601384.1\|WP_001028083.1\|1978059_1978554_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_LT601384.1\|WP_001230242.1\|1989156_1990329_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_LT601384.1\|WP_000777653.1\|1976648_1977449_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_LT601384.1\|WP_001151437.1\|1980705_1981302_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_LT601384.1\|WP_001062091.1\|1986610_1989157_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_LT601384.1\|WP_001143120.1\|1981322_1981550_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_LT601384.1\|WP_000979516.1\|1969267_1969477_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_000209894.1\|1986014_1986614_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.00485e-84
NZ_LT601384.1\|WP_000191701.1\|1973533_1974172_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_LT601384.1\|WP_000024560.1\|1985557_1985863_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_LT601384.1\|WP_001044279.1\|1981587_1982829_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_LT601384.1\|WP_000420621.1\|1984637_1985558_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_LT601384.1\|WP_001326838.1\|1978574_1979903_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_LT601384.1\|WP_001340618.1\|1974459_1975551_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_LT601384.1\|WP_001393558.1\|1975550_1976243_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	1.22031e-169
NZ_LT601384.1\|WP_001120125.1\|1990458_1991151_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	1.16516e-137
NZ_LT601384.1\|WP_001326840.1\|1969531_1973494_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_LT601384.1\|WP_001264933.1\|1991123_1992152_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	1.32852e-176
NZ_LT601384.1\|WP_001126780.1\|1976254_1976641_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_LT601384.1\|WP_001028083.1\|1978059_1978554_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	1.5266e-105
NZ_LT601384.1\|WP_001230242.1\|1989156_1990329_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_LT601384.1\|WP_000777653.1\|1976648_1977449_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	3.53291e-142
NZ_LT601384.1\|WP_001151437.1\|1980705_1981302_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_LT601384.1\|WP_001062091.1\|1986610_1989157_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_LT601384.1\|WP_001143120.1\|1981322_1981550_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_LT601384.1\|WP_001001176.1\|1977458_1978049_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.68154e-128

>NZ_LT601384.1|WP_001326838.1|1978574_1979903_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP
>NZ_LT601384.1|WP_001028083.1|1978059_1978554_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPAFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC
>NZ_LT601384.1|WP_001001176.1|1977458_1978049_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFTRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_LT601384.1|WP_000777653.1|1976648_1977449_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_LT601384.1|WP_001126780.1|1976254_1976641_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_LT601384.1|WP_001393558.1|1975550_1976243_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPKFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_LT601384.1|WP_001340618.1|1974459_1975551_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_LT601384.1|WP_000191701.1|1973533_1974172_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_LT601384.1|WP_001326840.1|1969531_1973494_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAKYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGTIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_LT601384.1|WP_000979516.1|1969267_1969477_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_LT601384.1|WP_001151437.1|1980705_1981302_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_LT601384.1|WP_001143120.1|1981322_1981550_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_LT601384.1|WP_001044279.1|1981587_1982829_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK
>NZ_LT601384.1|WP_000420621.1|1984637_1985558_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_LT601384.1|WP_000024560.1|1985557_1985863_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_LT601384.1|WP_000209894.1|1986014_1986614_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNELENRIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVARCRQYDSFGFYAALSQLLLVLVECDHQNR
>NZ_LT601384.1|WP_001062091.1|1986610_1989157_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_LT601384.1|WP_001230242.1|1989156_1990329_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_LT601384.1|WP_001120125.1|1990458_1991151_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_LT601384.1|WP_001264933.1|1991123_1992152_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK

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Crispr_ID: NZ_LT601384_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_5

2368758-2368902

Orphan

Consensus_repeat	Method
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT601384_5

>merge|NZ_LT601384|5|2368758-2368902|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGCTGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTCGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

>NZ_LT601384|5|5|2368758-2368902|CRISPRCasFinder
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	TGCGAAAATGCCTTATCTGGCCTACAGATTCGATGCGATTC
GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_000891515.1\|2379767_2379917_-\|multidrug-efflux-pump-accessory-protein-AcrZ	unknown	unknown	gnl\|CDD\|371231
NZ_LT601384.1\|WP_000246761.1\|2362412_2363168_-\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_LT601384.1\|WP_000593938.1\|2368925_2371187_-\|hydratase	unknown	unknown	gnl\|CDD\|183125
NZ_LT601384.1\|WP_001340186.1\|2356656_2357646_-\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
NZ_LT601384.1\|WP_000604034.1\|2378138_2378828_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|181841
NZ_LT601384.1\|WP_000042533.1\|2359142_2361164_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_LT601384.1\|WP_066009323.1\|2366780_2367257_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_LT601384.1\|WP_001300666.1\|2376258_2377077_+\|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase	unknown	unknown	gnl\|CDD\|182523
NZ_LT601384.1\|WP_000044843.1\|2361742_2362420_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_LT601384.1\|WP_001091569.1\|2367408_2368692_+\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_LT601384.1\|WP_000891692.1\|2377077_2378136_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	unknown	unknown	gnl\|CDD\|182993
NZ_LT601384.1\|WP_001295303.1\|2365432_2366722_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_LT601384.1\|WP_000723652.1\|2372878_2373931_-\|4-oxalomesaconate-tautomerase	unknown	unknown	gnl\|CDD\|380230
NZ_LT601384.1\|WP_000951213.1\|2364305_2365346_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_LT601384.1\|WP_001036475.1\|2371369_2372803_-\|anion-permease	unknown	unknown	gnl\|CDD\|279307
NZ_LT601384.1\|WP_000815435.1\|2375108_2376104_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|182912
NZ_LT601384.1\|WP_001295302.1\|2358042_2358951_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	unknown	unknown	gnl\|CDD\|211689
NZ_LT601384.1\|WP_000101984.1\|2378827_2379601_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|182641
NZ_LT601384.1\|WP_066009320.1\|2374114_2375068_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176131
NZ_LT601384.1\|WP_000118826.1\|2363154_2364309_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_000891515.1\|2379767_2379917_-\|multidrug-efflux-pump-accessory-protein-AcrZ	gnl\|CDD\|371231	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ. AcrZ is associated with the AcrA-TolC multidrug efflux pump, it may enhance the ability of the pump to recognize and export certain substrates.	1.04381e-17
NZ_LT601384.1\|WP_000246761.1\|2362412_2363168_-\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	7.9121e-172
NZ_LT601384.1\|WP_000593938.1\|2368925_2371187_-\|hydratase	gnl\|CDD\|183125	PRK11413, PRK11413, putative hydratase; Provisional.	0
NZ_LT601384.1\|WP_001340186.1\|2356656_2357646_-\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
NZ_LT601384.1\|WP_000604034.1\|2378138_2378828_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|181841	PRK09421, modB, molybdate ABC transporter permease subunit.	2.41762e-146
NZ_LT601384.1\|WP_000042533.1\|2359142_2361164_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_LT601384.1\|WP_066009323.1\|2366780_2367257_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	4.06665e-118
NZ_LT601384.1\|WP_001300666.1\|2376258_2377077_+\|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase	gnl\|CDD\|182523	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional.	0
NZ_LT601384.1\|WP_000044843.1\|2361742_2362420_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	3.39733e-110
NZ_LT601384.1\|WP_001091569.1\|2367408_2368692_+\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_LT601384.1\|WP_000891692.1\|2377077_2378136_-\|molybdenum-ABC-transporter-ATP-binding-protein-ModC	gnl\|CDD\|182993	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC.	0
NZ_LT601384.1\|WP_001295303.1\|2365432_2366722_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_LT601384.1\|WP_000723652.1\|2372878_2373931_-\|4-oxalomesaconate-tautomerase	gnl\|CDD\|380230	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase.	0
NZ_LT601384.1\|WP_000951213.1\|2364305_2365346_-\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_LT601384.1\|WP_001036475.1\|2371369_2372803_-\|anion-permease	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	0
NZ_LT601384.1\|WP_000815435.1\|2375108_2376104_-\|6-phosphogluconolactonase	gnl\|CDD\|182912	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional.	0
NZ_LT601384.1\|WP_001295302.1\|2358042_2358951_+\|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	2.22556e-139
NZ_LT601384.1\|WP_000101984.1\|2378827_2379601_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|182641	PRK10677, modA, molybdate transporter periplasmic protein; Provisional.	0
NZ_LT601384.1\|WP_066009320.1\|2374114_2375068_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176131	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.74195e-83
NZ_LT601384.1\|WP_000118826.1\|2363154_2364309_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0

>NZ_LT601384.1|WP_001091569.1|2367408_2368692_+|putative-acyl-CoA-thioester-hydrolase
MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPILSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVDAAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVTNSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFNAFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVDDNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK
>NZ_LT601384.1|WP_066009323.1|2366780_2367257_+|kinase-inhibitor
MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTGYDGAAPPKGETHRYIFTVHALDIERIDVDEGASAAMVGFNVHFHSLASASITAMFS
>NZ_LT601384.1|WP_001295303.1|2365432_2366722_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ
>NZ_LT601384.1|WP_000951213.1|2364305_2365346_-|biotin-synthase-BioB
MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMTPDTDEYYNAAAL
>NZ_LT601384.1|WP_000118826.1|2363154_2364309_-|8-amino-7-oxononanoate-synthase
MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQLAEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG
>NZ_LT601384.1|WP_000246761.1|2362412_2363168_-|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYTHVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE
>NZ_LT601384.1|WP_000044843.1|2361742_2362420_-|ATP-dependent-dethiobiotin-synthetase-BioD
MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGKYINLALL
>NZ_LT601384.1|WP_000042533.1|2359142_2361164_-|excinuclease-ABC-subunit-B
MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_LT601384.1|WP_001295302.1|2358042_2358951_+|uridine-diphosphate-N-acetylglucosamine-binding-protein-YvcK
MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLKALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTPIQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMVYIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVLEASDIPYRHDRQLLHNALEKALQALG
>NZ_LT601384.1|WP_001340186.1|2356656_2357646_-|GTP-3',8-cyclase-MoaA
MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNKGFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNGYRLERDVASWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVKVNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELLRRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLFGEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG
>NZ_LT601384.1|WP_000593938.1|2368925_2371187_-|hydratase
MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTMAVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGFVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM
>NZ_LT601384.1|WP_001036475.1|2371369_2372803_-|anion-permease
MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNMLIGWNML
>NZ_LT601384.1|WP_000723652.1|2372878_2373931_-|4-oxalomesaconate-tautomerase
MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP
>NZ_LT601384.1|WP_066009320.1|2374114_2375068_+|LysR-family-transcriptional-regulator
MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEEDLHIQLFERTTRKVTLTKAGKRLHPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPTAVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFTPLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLDWFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKDAVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG
>NZ_LT601384.1|WP_000815435.1|2375108_2376104_-|6-phosphogluconolactonase
MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH
>NZ_LT601384.1|WP_001300666.1|2376258_2377077_+|bifunctional-pyridoxal-phosphate/fructose-1,6-bisphosphate-phosphatase
MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTGRHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHIHGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFALTHDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENVVAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI
>NZ_LT601384.1|WP_000891692.1|2377077_2378136_-|molybdenum-ABC-transporter-ATP-binding-protein-ModC
MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAISGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMSKSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLDIPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWGSSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELAIKPGLWLYAQIKSVSITA
>NZ_LT601384.1|WP_000604034.1|2378138_2378828_-|molybdate-ABC-transporter-permease-subunit
MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGKALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVMSFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARSLGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEWLARISRERAGR
>NZ_LT601384.1|WP_000101984.1|2378827_2379601_-|molybdate-ABC-transporter-substrate-binding-protein
MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK
>NZ_LT601384.1|WP_000891515.1|2379767_2379917_-|multidrug-efflux-pump-accessory-protein-AcrZ
MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQPGQNH

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Crispr_ID: NZ_LT601384_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_6

2799382-2799526

Orphan

Consensus_repeat	Method
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT601384_6

>merge|NZ_LT601384|6|2799382-2799526|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCATCGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACCTTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

>NZ_LT601384|6|6|2799382-2799526|CRISPRCasFinder
TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	CGGAGCACTTATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCTGGCACC
TTTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_001221319.1\|2793649_2794852_+\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_LT601384.1\|WP_001276420.1\|2802496_2803174_-\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
NZ_LT601384.1\|WP_000193393.1\|2803672_2804197_-\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_LT601384.1\|WP_001295331.1\|2804957_2805767_+\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_LT601384.1\|WP_000158159.1\|2804379_2804838_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_LT601384.1\|WP_000113933.1\|2792770_2793460_-\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NZ_LT601384.1\|WP_001298537.1\|2800582_2801494_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|225521
NZ_LT601384.1\|WP_066008912.1\|2799549_2800458_-\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_LT601384.1\|WP_000149639.1\|2789691_2791011_-\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	unknown	unknown	gnl\|CDD\|185331
NZ_LT601384.1\|WP_000698951.1\|2794848_2797995_+\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330
NZ_LT601384.1\|WP_001326926.1\|2798120_2799305_+\|MFS-transporter-AraJ	unknown	unknown	gnl\|CDD\|182234
NZ_LT601384.1\|WP_001266503.1\|2784520_2785591_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_LT601384.1\|WP_001295332.1\|2806999_2807320_-\|phosphate-starvation-inducible-protein-PsiF	unknown	unknown	gnl\|CDD\|183165
NZ_LT601384.1\|WP_001142439.1\|2803431_2803623_-\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
NZ_LT601384.1\|WP_000941942.1\|2802140_2802425_-\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_LT601384.1\|WP_120795376.1\|2801571_2801655_-\|protein-YkiD	unknown	unknown	unknown
NZ_LT601384.1\|WP_001009885.1\|2785683_2786265_+\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
NZ_LT601384.1\|WP_000893623.1\|2791417_2792713_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NZ_LT601384.1\|WP_001310597.1\|2786269_2788087_-\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_LT601384.1\|WP_001295329.1\|2788242_2789616_-\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_001221319.1\|2793649_2794852_+\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_LT601384.1\|WP_001295331.1\|2804957_2805767_+\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
NZ_LT601384.1\|WP_000193393.1\|2803672_2804197_-\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
NZ_LT601384.1\|WP_000158159.1\|2804379_2804838_-\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
NZ_LT601384.1\|WP_000113933.1\|2792770_2793460_-\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
NZ_LT601384.1\|WP_001298537.1\|2800582_2801494_+\|recombination-associated-protein-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
NZ_LT601384.1\|WP_066008912.1\|2799549_2800458_-\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_LT601384.1\|WP_000149639.1\|2789691_2791011_-\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
NZ_LT601384.1\|WP_000698951.1\|2794848_2797995_+\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_LT601384.1\|WP_001326926.1\|2798120_2799305_+\|MFS-transporter-AraJ	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
NZ_LT601384.1\|WP_001266503.1\|2784520_2785591_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_LT601384.1\|WP_001295332.1\|2806999_2807320_-\|phosphate-starvation-inducible-protein-PsiF	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	4.64667e-55
NZ_LT601384.1\|WP_001142439.1\|2803431_2803623_-\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
NZ_LT601384.1\|WP_000941942.1\|2802140_2802425_-\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
NZ_LT601384.1\|WP_001276420.1\|2802496_2803174_-\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
NZ_LT601384.1\|WP_001009885.1\|2785683_2786265_+\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
NZ_LT601384.1\|WP_000893623.1\|2791417_2792713_-\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_LT601384.1\|WP_001310597.1\|2786269_2788087_-\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NZ_LT601384.1\|WP_001295329.1\|2788242_2789616_-\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0

>NZ_LT601384.1|WP_001326926.1|2798120_2799305_+|MFS-transporter-AraJ
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>NZ_LT601384.1|WP_000698951.1|2794848_2797995_+|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>NZ_LT601384.1|WP_001221319.1|2793649_2794852_+|exonuclease-subunit-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>NZ_LT601384.1|WP_000113933.1|2792770_2793460_-|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>NZ_LT601384.1|WP_000893623.1|2791417_2792713_-|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>NZ_LT601384.1|WP_000149639.1|2789691_2791011_-|branched-chain-amino-acid-transporter-carrier-protein-BrnQ
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>NZ_LT601384.1|WP_001295329.1|2788242_2789616_-|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>NZ_LT601384.1|WP_001310597.1|2786269_2788087_-|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>NZ_LT601384.1|WP_001009885.1|2785683_2786265_+|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>NZ_LT601384.1|WP_001266503.1|2784520_2785591_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE
>NZ_LT601384.1|WP_066008912.1|2799549_2800458_-|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAVGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>NZ_LT601384.1|WP_001298537.1|2800582_2801494_+|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>NZ_LT601384.1|WP_120795376.1|2801571_2801655_-|protein-YkiD
MTQRPWSKLQRKTHNIAALKIIARRSE
>NZ_LT601384.1|WP_000941942.1|2802140_2802425_-|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>NZ_LT601384.1|WP_001276420.1|2802496_2803174_-|AroM-family-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>NZ_LT601384.1|WP_001142439.1|2803431_2803623_-|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>NZ_LT601384.1|WP_000193393.1|2803672_2804197_-|shikimate-kinase-AroL
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>NZ_LT601384.1|WP_000158159.1|2804379_2804838_-|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>NZ_LT601384.1|WP_001295331.1|2804957_2805767_+|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>NZ_LT601384.1|WP_001295332.1|2806999_2807320_-|phosphate-starvation-inducible-protein-PsiF
MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQALKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACLKKAA

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Crispr_ID: NZ_LT601384_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_7

3156652-3157353

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

11 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_LT601384_7

>merge|NZ_LT601384|7|3156652-3157353|CRISPRCasFinder,CRT,PILER-CR
CGGTTTATCCCCGCTGATGCGGGGAACACCAGCGTCAGGCGTGAAATCTCACCGTCGTTGCCGGTTTATCCCTGCTGGCGCGGGGAACTCTCAGTTCAGGCGTTGCAAACCTGGCTACCGGGCGGTTTATCCCCGCTAACGCGGGGAACTCGTAGTCCATCATTCCACCTATGTCTGAACTCCCGGTTTATCCCCGCTGGCGCGGGGAACTCCCGGGGGATAATGTTTACGGTCATGCGCCCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCATCGTCCATATTAACAATCGTGGTGAGTTCAACGGTTTATCCCCGCTGGCGCGGGGAACTCTAGTTTCCGTATCTCCGGATTTATAAAGCTGACGGTTTATCCCCGCTGGCGCGGGGAACTCGCAGGCGGCGACGCGCAGGGTATGCGCGATTCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGACCGCTCAGAAATTCCAGACCCGATCCAAACGGTTTATCCCCGCTGGCGCGGGGAACTCTCAACATTATCAATTACAACCGACAGGGAGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGCGTGTTCGGCATCACCTTTGGCTTCGGCTGCGGTTTATCCCCGCTGGCGCGGGGAACTCTGCGTGAGCGTATCGCCGCGCGTCTGCGAAAGCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_LT601384|7|7|3156652-3157353|CRISPRCasFinder
CGGTTTATCCCCGCTGATGCGGGGAACAC	CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC
CGGTTTATCCCTGCTGGCGCGGGGAACTC	TCAGTTCAGGCGTTGCAAACCTGGCTACCGGG
CGGTTTATCCCCGCTAACGCGGGGAACTC	GTAGTCCATCATTCCACCTATGTCTGAACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CCGGGGGATAATGTTTACGGTCATGCGCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCGTCCATATTAACAATCGTGGTGAGTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAGTTTCCGTATCTCCGGATTTATAAAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGACCGCTCAGAAATTCCAGACCCGATCCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAACATTATCAATTACAACCGACAGGGAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_LT601384|7|1|3156652-3157353|CRT
CGGTTTATCCCCGCTGATGCGGGGAACAC	CAGCGTCAGGCGTGAAATCTCACCGTCGTTGC
CGGTTTATCCCTGCTGGCGCGGGGAACTC	TCAGTTCAGGCGTTGCAAACCTGGCTACCGGG
CGGTTTATCCCCGCTAACGCGGGGAACTC	GTAGTCCATCATTCCACCTATGTCTGAACTCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CCGGGGGATAATGTTTACGGTCATGCGCCCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ATCGTCCATATTAACAATCGTGGTGAGTTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAGTTTCCGTATCTCCGGATTTATAAAGCTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGACCGCTCAGAAATTCCAGACCCGATCCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAACATTATCAATTACAACCGACAGGGAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_LT601384|7|1|3157018-3157353|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCAGGCGGCGACGCGCAGGGTATGCGCGATTCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGACCGCTCAGAAATTCCAGACCCGATCCAAA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TCAACATTATCAATTACAACCGACAGGGAGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGCGTGTTCGGCATCACCTTTGGCTTCGGCTG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGCGTGAGCGTATCGCCGCGCGTCTGCGAAAG
CGGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_000246138.1\|3150730_3151441_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LT601384.1\|WP_001173673.1\|3152337_3152943_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LT601384.1\|WP_000517476.1\|3151459_3151771_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LT601384.1\|WP_000220066.1\|3157744_3158662_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LT601384.1\|WP_000568943.1\|3149205_3150255_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_LT601384.1\|WP_001381369.1\|3157458_3157743_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LT601384.1\|WP_001334996.1\|3159263_3159938_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_LT601384.1\|WP_000490428.1\|3155531_3156569_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LT601384.1\|WP_001219242.1\|3150251_3150731_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_LT601384.1\|WP_001090361.1\|3152942_3154370_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LT601384.1\|WP_001290679.1\|3167276_3168989_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LT601384.1\|WP_000752800.1\|3161044_3161527_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_LT601384.1\|WP_066009452.1\|3158677_3159277_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_LT601384.1\|WP_000064450.1\|3159940_3161032_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_LT601384.1\|WP_001246104.1\|3151964_3152288_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_LT601384.1\|WP_000039850.1\|3166467_3167202_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_LT601384.1\|WP_066008907.1\|3163442_3166109_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_LT601384.1\|WP_000372108.1\|3154371_3155280_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LT601384.1\|WP_066009451.1\|3161519_3163028_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_LT601384.1\|WP_001295182.1\|3148463_3149225_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_000246138.1\|3150730_3151441_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_LT601384.1\|WP_001173673.1\|3152337_3152943_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_LT601384.1\|WP_000517476.1\|3151459_3151771_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_LT601384.1\|WP_000220066.1\|3157744_3158662_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.68794e-159
NZ_LT601384.1\|WP_000568943.1\|3149205_3150255_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_LT601384.1\|WP_001381369.1\|3157458_3157743_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.76227e-62
NZ_LT601384.1\|WP_001334996.1\|3159263_3159938_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.15381e-103
NZ_LT601384.1\|WP_000490428.1\|3155531_3156569_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LT601384.1\|WP_001219242.1\|3150251_3150731_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_LT601384.1\|WP_001090361.1\|3152942_3154370_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LT601384.1\|WP_001290679.1\|3167276_3168989_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LT601384.1\|WP_000752800.1\|3161044_3161527_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76293e-33
NZ_LT601384.1\|WP_066009452.1\|3158677_3159277_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.26666e-100
NZ_LT601384.1\|WP_000064450.1\|3159940_3161032_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.43824e-154
NZ_LT601384.1\|WP_001246104.1\|3151964_3152288_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_LT601384.1\|WP_000039850.1\|3166467_3167202_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.39575e-137
NZ_LT601384.1\|WP_066008907.1\|3163442_3166109_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_LT601384.1\|WP_000372108.1\|3154371_3155280_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LT601384.1\|WP_066009451.1\|3161519_3163028_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_LT601384.1\|WP_001295182.1\|3148463_3149225_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150

>NZ_LT601384.1|WP_000490428.1|3155531_3156569_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_LT601384.1|WP_000372108.1|3154371_3155280_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_LT601384.1|WP_001090361.1|3152942_3154370_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_LT601384.1|WP_001173673.1|3152337_3152943_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_LT601384.1|WP_001246104.1|3151964_3152288_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_LT601384.1|WP_000517476.1|3151459_3151771_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_LT601384.1|WP_000246138.1|3150730_3151441_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_LT601384.1|WP_001219242.1|3150251_3150731_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_LT601384.1|WP_000568943.1|3149205_3150255_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_LT601384.1|WP_001295182.1|3148463_3149225_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_LT601384.1|WP_001381369.1|3157458_3157743_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV
>NZ_LT601384.1|WP_000220066.1|3157744_3158662_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTWNGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>NZ_LT601384.1|WP_066009452.1|3158677_3159277_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCLEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_LT601384.1|WP_001334996.1|3159263_3159938_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_LT601384.1|WP_000064450.1|3159940_3161032_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_LT601384.1|WP_000752800.1|3161044_3161527_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_LT601384.1|WP_066009451.1|3161519_3163028_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALVLLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPVTTFVRGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSNESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>NZ_LT601384.1|WP_066008907.1|3163442_3166109_-|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLLDQQIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAITEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPIYLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPVATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGKQNLDGWVWQGNSIVITYTGDEGMTRVIPANPK
>NZ_LT601384.1|WP_000039850.1|3166467_3167202_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LT601384.1|WP_001290679.1|3167276_3168989_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD

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Crispr_ID: NZ_LT601384_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_8

3182842-3183175

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

5 spacers

The CRISPR arrays of NZ_LT601384_8

>merge|NZ_LT601384|8|3182842-3183175|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCGACAGAACGGCCTCAGTAGTCTCGTCAGGCTCCGGTTTATCCCCGCTGGCGCGGGGAACACCTGTTTTCGCAAATCTATGGACTATTGCTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGCACGGAATACAAAGCCGTGTATCTGCTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTCTGCAACAGCAGCACCCATGACCACGTCGGTTTATCCCCGCTGGCGCGGGGAACACATTACGCCTTTTTGCGATTGCCCGGTTTTTGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_LT601384|8|8|3182842-3183175|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGTTTTCGCAAATCTATGGACTATTGCTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGCACGGAATACAAAGCCGTGTATCTGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCTGCAACAGCAGCACCCATGACCACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTACGCCTTTTTGCGATTGCCCGGTTTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_LT601384|8|2|3182842-3183175|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	GACAGAACGGCCTCAGTAGTCTCGTCAGGCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGTTTTCGCAAATCTATGGACTATTGCTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGCACGGAATACAAAGCCGTGTATCTGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCTGCAACAGCAGCACCCATGACCACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTACGCCTTTTTGCGATTGCCCGGTTTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_LT601384|8|2|3182903-3183175|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTGTTTTCGCAAATCTATGGACTATTGCTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGCACGGAATACAAAGCCGTGTATCTGCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTCTGCAACAGCAGCACCCATGACCACGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTACGCCTTTTTGCGATTGCCCGGTTTTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_000581937.1\|3189858_3190107_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_LT601384.1\|WP_001199973.1\|3183514_3184186_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_LT601384.1\|WP_001299097.1\|3173808_3174669_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_LT601384.1\|WP_000147666.1\|3175422_3176832_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_LT601384.1\|WP_066008908.1\|3179481_3180759_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_LT601384.1\|WP_001071648.1\|3188661_3189453_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_LT601384.1\|WP_001288228.1\|3184324_3184465_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT601384.1\|WP_001301334.1\|3171546_3172818_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_LT601384.1\|WP_001130266.1\|3173085_3173661_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_LT601384.1\|WP_000021334.1\|3178377_3179163_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_LT601384.1\|WP_001299652.1\|3174665_3175445_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_LT601384.1\|WP_000059307.1\|3176853_3178308_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_LT601384.1\|WP_001268460.1\|3184478_3185351_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_LT601384.1\|WP_000226815.1\|3190184_3192419_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_LT601384.1\|WP_000046812.1\|3192466_3193768_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_LT601384.1\|WP_000210878.1\|3186796_3188434_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_LT601384.1\|WP_000036723.1\|3185410_3186709_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_LT601384.1\|WP_000109529.1\|3172808_3173069_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_LT601384.1\|WP_000039688.1\|3180785_3182264_+\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_LT601384.1\|WP_000254738.1\|3189523_3189859_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_000581937.1\|3189858_3190107_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_LT601384.1\|WP_001199973.1\|3183514_3184186_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_LT601384.1\|WP_001299097.1\|3173808_3174669_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	7.42017e-90
NZ_LT601384.1\|WP_000147666.1\|3175422_3176832_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_LT601384.1\|WP_066008908.1\|3179481_3180759_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	2.94454e-29
NZ_LT601384.1\|WP_001071648.1\|3188661_3189453_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_LT601384.1\|WP_001301334.1\|3171546_3172818_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	5.03655e-125
NZ_LT601384.1\|WP_001130266.1\|3173085_3173661_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_LT601384.1\|WP_000021334.1\|3178377_3179163_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	7.96451e-139
NZ_LT601384.1\|WP_001299652.1\|3174665_3175445_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.56693e-62
NZ_LT601384.1\|WP_000059307.1\|3176853_3178308_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.73778e-83
NZ_LT601384.1\|WP_001268460.1\|3184478_3185351_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.25867e-100
NZ_LT601384.1\|WP_000226815.1\|3190184_3192419_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_LT601384.1\|WP_000046812.1\|3192466_3193768_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_LT601384.1\|WP_000210878.1\|3186796_3188434_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_LT601384.1\|WP_000036723.1\|3185410_3186709_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_LT601384.1\|WP_000109529.1\|3172808_3173069_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.43419e-42
NZ_LT601384.1\|WP_000039688.1\|3180785_3182264_+\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.27376e-109
NZ_LT601384.1\|WP_000254738.1\|3189523_3189859_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74

>NZ_LT601384.1|WP_000039688.1|3180785_3182264_+|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_LT601384.1|WP_066008908.1|3179481_3180759_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKMVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_LT601384.1|WP_000021334.1|3178377_3179163_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_LT601384.1|WP_000059307.1|3176853_3178308_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_LT601384.1|WP_000147666.1|3175422_3176832_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_LT601384.1|WP_001299652.1|3174665_3175445_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_LT601384.1|WP_001299097.1|3173808_3174669_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_LT601384.1|WP_001130266.1|3173085_3173661_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_LT601384.1|WP_000109529.1|3172808_3173069_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPEGNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_LT601384.1|WP_001301334.1|3171546_3172818_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>NZ_LT601384.1|WP_001199973.1|3183514_3184186_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_LT601384.1|WP_001288228.1|3184324_3184465_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFIQI
>NZ_LT601384.1|WP_001268460.1|3184478_3185351_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>NZ_LT601384.1|WP_000036723.1|3185410_3186709_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_LT601384.1|WP_000210878.1|3186796_3188434_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_LT601384.1|WP_001071648.1|3188661_3189453_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_LT601384.1|WP_000254738.1|3189523_3189859_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_LT601384.1|WP_000581937.1|3189858_3190107_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_LT601384.1|WP_000226815.1|3190184_3192419_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_LT601384.1|WP_000046812.1|3192466_3193768_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Crispr_ID: NZ_LT601384_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT601384_9

4956870-4957003

Orphan

Consensus_repeat	Method
TACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT601384_9

>merge|NZ_LT601384|9|4956870-4957003|CRISPRCasFinder
TACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCTGACAATAACAGCATTGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NZ_LT601384|9|9|4956870-4957003|CRISPRCasFinder
TACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCTGACAATAACAGCATTGCCTGATGCGACGCTGTTGTGTCTTATCAGGCC
TACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT601384.1\|WP_068879493.1\|4948071_4949655_+\|DNA-binding-protein	unknown	unknown	unknown
NZ_LT601384.1\|WP_001422766.1\|4965935_4966967_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_LT601384.1\|WP_000230281.1\|4945450_4945846_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100005
NZ_LT601384.1\|WP_000416392.1\|4953387_4956243_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_LT601384.1\|WP_066009171.1\|4962698_4963697_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_LT601384.1\|WP_001059422.1\|4951439_4951943_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT601384.1\|WP_000079641.1\|4952135_4953332_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_LT601384.1\|WP_000012904.1\|4949811_4950816_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_LT601384.1\|WP_066009173.1\|4963763_4965083_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_LT601384.1\|WP_000998695.1\|4965147_4965912_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_LT601384.1\|WP_000002953.1\|4950977_4951394_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_LT601384.1\|WP_000397144.1\|4957039_4958551_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_LT601384.1\|WP_001544294.1\|4945976_4946690_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_LT601384.1\|WP_000786399.1\|4956242_4956686_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_LT601384.1\|WP_000896741.1\|4967182_4967746_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_LT601384.1\|WP_001422763.1\|4959917_4961000_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_LT601384.1\|WP_032230423.1\|4961118_4962621_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_LT601384.1\|WP_000584114.1\|4958817_4959918_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_LT601384.1\|WP_000256670.1\|4946760_4947354_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LT601384.1\|WP_000061766.1\|4967749_4968769_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186

Protein	Function_ID	Function_description	E-value
NZ_LT601384.1\|WP_001422766.1\|4965935_4966967_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_LT601384.1\|WP_000230281.1\|4945450_4945846_-\|RidA-family-protein	gnl\|CDD\|100005	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	2.31381e-58
NZ_LT601384.1\|WP_000416392.1\|4953387_4956243_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_LT601384.1\|WP_066009171.1\|4962698_4963697_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	9.29773e-110
NZ_LT601384.1\|WP_001059422.1\|4951439_4951943_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.57543e-19
NZ_LT601384.1\|WP_000079641.1\|4952135_4953332_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	1.34664e-150
NZ_LT601384.1\|WP_000012904.1\|4949811_4950816_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_LT601384.1\|WP_066009173.1\|4963763_4965083_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_LT601384.1\|WP_000998695.1\|4965147_4965912_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_LT601384.1\|WP_000002953.1\|4950977_4951394_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_LT601384.1\|WP_000584114.1\|4958817_4959918_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_LT601384.1\|WP_001544294.1\|4945976_4946690_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	1.28559e-147
NZ_LT601384.1\|WP_000786399.1\|4956242_4956686_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_LT601384.1\|WP_000896741.1\|4967182_4967746_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	9.19632e-126
NZ_LT601384.1\|WP_001422763.1\|4959917_4961000_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_LT601384.1\|WP_032230423.1\|4961118_4962621_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_LT601384.1\|WP_000397144.1\|4957039_4958551_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_LT601384.1\|WP_000256670.1\|4946760_4947354_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.0374e-10
NZ_LT601384.1\|WP_000061766.1\|4967749_4968769_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.74944e-168

>NZ_LT601384.1|WP_000786399.1|4956242_4956686_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_LT601384.1|WP_000416392.1|4953387_4956243_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVVLRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_LT601384.1|WP_000079641.1|4952135_4953332_+|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFCYFAILMTVSADMPLVGCVLTLLLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLARISRGIMPSLPFL
>NZ_LT601384.1|WP_001059422.1|4951439_4951943_-|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTQQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYDGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIGLYEHLGFQHIDYALGCTGHVDCEVRMLREL
>NZ_LT601384.1|WP_000002953.1|4950977_4951394_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_LT601384.1|WP_000012904.1|4949811_4950816_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNNKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_LT601384.1|WP_068879493.1|4948071_4949655_+|DNA-binding-protein
MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARIVEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMQFVMNNPEGERADLSKVEIEVTLASAFNNGIREGHTAIIFSQPDGSTNRYEGKSFERKDESSLHLITNKILACYQREANKEIARLLNIPQELNNPHDLNYSQVSCKNSVDSTITDLLEKPLNNALLAIRKEHLLLMPYMCNESISYLLGEKWTLKEIDALNALNNYLINNKKATDNEINDIKVNLSHILIDSLDDAKVNLTPVIGSILETFLKSPYINDVRILDWCFNKSMQYFGDSEKIKYACSVINHIDFSCDQSKDFSCDQSKIKIAETLFFNLDKEPYENSRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVKLLFNEVPVSILVNDIFLKDFFMRQPDFAKWYFYQLLKKYEGEQLYLNELGYVYGNEEKTNEIVKKHPGYVIKIFEEKMGNELKIRTRMMKILRNGKINIYEYINI
>NZ_LT601384.1|WP_000256670.1|4946760_4947354_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPLARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTLLKE
>NZ_LT601384.1|WP_001544294.1|4945976_4946690_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGEALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSLMAIKRHRQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_LT601384.1|WP_000230281.1|4945450_4945846_-|RidA-family-protein
MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPENQFEDIMTVKNEIFSAPPYPNWTAVGVTWLAGFDFEIKVIARIPEQ
>NZ_LT601384.1|WP_000397144.1|4957039_4958551_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_LT601384.1|WP_000584114.1|4958817_4959918_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_LT601384.1|WP_001422763.1|4959917_4961000_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDAELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_LT601384.1|WP_032230423.1|4961118_4962621_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMTNRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQTPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDQESAYEMLQKGVQASIEQQNNPPAKGKEIAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_LT601384.1|WP_066009171.1|4962698_4963697_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMGEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_LT601384.1|WP_066009173.1|4963763_4965083_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEIVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_LT601384.1|WP_000998695.1|4965147_4965912_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_LT601384.1|WP_001422766.1|4965935_4966967_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFVSGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_LT601384.1|WP_000896741.1|4967182_4967746_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQEDEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_LT601384.1|WP_000061766.1|4967749_4968769_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDIEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKTLAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT601384_4	4.1\|1980217\|40\|NZ_LT601384\|CRISPRCasFinder	1980217-1980256	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_LT601384_2	2.1\|1235095\|38\|NZ_LT601384\|CRISPRCasFinder	1235095-1235132	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_LT601384_7	7.10\|3157232\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157232-3157263	32	KY883647	Vibrio phage JSF33, complete genome	9760-9791	6	0.812
NZ_LT601384_7	7.11\|3157293\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157293-3157324	32	NZ_CP009293	Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence	152196-152227	6	0.812
NZ_LT601384_7	7.5\|3156925\|32\|NZ_LT601384\|CRISPRCasFinder,CRT	3156925-3156956	32	MF351863	Synechococcus phage Bellamy, complete genome	123998-124029	7	0.781
NZ_LT601384_8	8.4\|3183054\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3183054-3183085	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	755173-755204	7	0.781
NZ_LT601384_7	7.1\|3156681\|32\|NZ_LT601384\|CRISPRCasFinder,CRT	3156681-3156712	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NC_013856	Azospirillum sp. B510 plasmid pAB510b, complete sequence	375744-375776	8	0.758
NZ_LT601384_7	7.10\|3157232\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157232-3157263	32	MN855762	Bacteriophage sp. isolate 505, complete genome	4840-4871	8	0.75
NZ_LT601384_7	7.10\|3157232\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157232-3157263	32	NC_020548	Azoarcus sp. KH32C plasmid pAZKH, complete sequence	224460-224491	8	0.75
NZ_LT601384_7	7.11\|3157293\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157293-3157324	32	NZ_CP007130	Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence	750410-750441	8	0.75
NZ_LT601384_8	8.1\|3182871\|32\|NZ_LT601384\|CRISPRCasFinder,CRT	3182871-3182902	32	MK814759	Gordonia phage Reyja, complete genome	4467-4498	8	0.75
NZ_LT601384_8	8.4\|3183054\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3183054-3183085	32	NZ_CP007070	Rhizobium leguminosarum bv. trifolii CB782 plasmid unnamed, complete sequence	191920-191951	8	0.75
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_CP010957	Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence	26182-26214	9	0.727
NZ_LT601384_7	7.10\|3157232\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157232-3157263	32	NZ_CP015585	Roseomonas gilardii strain U14-5 plasmid 1, complete sequence	104261-104292	9	0.719
NZ_LT601384_7	7.10\|3157232\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157232-3157263	32	NZ_CP054618	Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence	142898-142929	9	0.719
NZ_LT601384_7	7.11\|3157293\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157293-3157324	32	MN234174	Mycobacterium phage Efra2, complete genome	35614-35645	9	0.719
NZ_LT601384_7	7.11\|3157293\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157293-3157324	32	MN234165	Mycobacterium phage Yunkel11, complete genome	35570-35601	9	0.719
NZ_LT601384_7	7.11\|3157293\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157293-3157324	32	MN234201	Mycobacterium phage Guanica15, complete genome	35571-35602	9	0.719
NZ_LT601384_8	8.5\|3183115\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3183115-3183146	32	NC_007959	Nitrobacter hamburgensis X14 plasmid 1, complete sequence	246573-246604	9	0.719
NZ_LT601384_6	6.1\|2799425\|59\|NZ_LT601384\|CRISPRCasFinder	2799425-2799483	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	CP046443	Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence	31933-31965	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	103013-103045	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_LT963392	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence	110510-110542	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_CP034079	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence	48454-48486	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_CP034080	Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence	39480-39512	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NC_005918	Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence	31117-31149	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_CP047262	Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence	30966-30998	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_CP026560	Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence	19118-19150	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_LT963406	Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence	54820-54852	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	LT985193	Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2	32077-32109	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_LT963393	Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence	50597-50629	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_LT985210	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence	105842-105874	10	0.697
NZ_LT601384_7	7.7\|3157047\|33\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157047-3157079	33	NZ_LT985211	Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence	84272-84304	10	0.697
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052797	Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence	45808-45839	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052795	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence	282589-282620	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP047882	Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence	94965-94996	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052804	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence	304288-304319	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP038508	Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence	112376-112407	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052802	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence	315682-315713	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052788	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence	203378-203409	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052840	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence	127648-127679	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052786	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence	215302-215333	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052838	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence	214483-214514	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP028316	Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence	108893-108924	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP051676	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence	83669-83700	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052783	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence	194119-194150	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052836	Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence	18410-18441	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP022063	Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence	64615-64646	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052781	Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence	169480-169511	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052834	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence	6457-6488	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052793	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence	25758-25789	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052779	Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence	140403-140434	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052832	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence	160727-160758	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP031362	Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence	140152-140183	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052830	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence	193709-193740	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052828	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence	126974-127005	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052826	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence	110984-111015	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP016409	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence	94916-94947	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052824	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence	91497-91528	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052822	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence	110984-111015	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP016407	Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence	94916-94947	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052820	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence	94916-94947	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP016413	Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence	94916-94947	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP016411	Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence	94916-94947	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052816	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598	165317-165348	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052814	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence	99109-99140	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP022662	Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence	54379-54410	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052812	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence	1671-1702	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052810	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence	212751-212782	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052808	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence	306376-306407	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052806	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence	164579-164610	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052791	Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence	168074-168105	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052818	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence	190524-190555	10	0.688
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	CP052799	Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence	6457-6488	10	0.688
NZ_LT601384_6	6.1\|2799425\|59\|NZ_LT601384\|CRISPRCasFinder	2799425-2799483	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814
NZ_LT601384_7	7.9\|3157171\|32\|NZ_LT601384\|CRISPRCasFinder,CRT,PILER-CR	3157171-3157202	32	NZ_CP026128	Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence	49165-49196	11	0.656

1. spacer 4.1|1980217|40|NZ_LT601384|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 2.1|1235095|38|NZ_LT601384|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 7.10|3157232|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to KY883647 (Vibrio phage JSF33, complete genome) position: , mismatch: 6, identity: 0.812

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
agcagtttcggcatcagctttggctttggctt	Protospacer
***.  ********** *********.****

4. spacer 7.11|3157293|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009293 (Novosphingobium pentaromativorans US6-1 plasmid pLA4, complete sequence) position: , mismatch: 6, identity: 0.812

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
agaatgagcgtgtcgccgcgcgtctgcgtgag	Protospacer
 * .*******.**************** .**

5. spacer 7.5|3156925|32|NZ_LT601384|CRISPRCasFinder,CRT matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 7, identity: 0.781

atcgtccatattaacaatcgtggtgagttcaa	CRISPR spacer
atcgcccatatcaacaatcgtggtgatacctt	Protospacer
****.******.**************  .*

6. spacer 8.4|3183054|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

tggctctgcaacagcagcacccatgaccacgt	CRISPR spacer
cgctccagcaacagcagcacccacgaccacgg	Protospacer
.* ..* ****************.*******

7. spacer 7.1|3156681|32|NZ_LT601384|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

cagcgtcaggcgtgaaatctcaccgtcgttgc	CRISPR spacer
attctttaggcgtgacatcttaccgtcgttga	Protospacer
   * *.******** ****.**********

8. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NC_013856 (Azospirillum sp. B510 plasmid pAB510b, complete sequence) position: , mismatch: 8, identity: 0.758

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
cgcgtcggcgacgcgcaggtaatgcgcgatcag	Protospacer
   * **************  *********. *

9. spacer 7.10|3157232|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to MN855762 (Bacteriophage sp. isolate 505, complete genome) position: , mismatch: 8, identity: 0.75

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
gaccagctcgaaatcacctttggcttcggctt	Protospacer
..*  *.***. *******************

10. spacer 7.10|3157232|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 8, identity: 0.75

agcgtgtt---cggcatcacctttggcttcggctg	CRISPR spacer
---ctgctcgccggcatcaccttcggcttctgcta	Protospacer
    **.*   ************.****** ***.

11. spacer 7.11|3157293|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007130 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75

tgcgtgagcgtatcgccgcgcgtctgcgaaag-	CRISPR spacer
agcgagagcgtatcgccgcgc-ttcgtgaagcc	Protospacer
 *** **************** *..*.***.

12. spacer 8.1|3182871|32|NZ_LT601384|CRISPRCasFinder,CRT matches to MK814759 (Gordonia phage Reyja, complete genome) position: , mismatch: 8, identity: 0.75

-gacagaacggcctcagtagtctcgtcaggctc	CRISPR spacer
ccaccg-ctggccccagtagcctcgtcaggctt	Protospacer
  ** *  .****.******.***********.

13. spacer 8.4|3183054|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007070 (Rhizobium leguminosarum bv. trifolii CB782 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggctctgcaacagcagcacccatgaccacgt	CRISPR spacer
catcactgcaacatcagcatccatgaccgcat	Protospacer
.. * ******** *****.********.*.*

14. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010957 (Sphingobium sp. YBL2 plasmid 3pYBL2-3, complete sequence) position: , mismatch: 9, identity: 0.727

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
cgaggcggcgacacgcaaggtatgcgggtcgag	Protospacer
  **********.****.******** * .  *

15. spacer 7.10|3157232|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015585 (Roseomonas gilardii strain U14-5 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
atccgcacgggcatcacctttggctccagctg	Protospacer
* *    . ****************.*.****

16. spacer 7.10|3157232|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054618 (Azospirillum oryzae strain KACC 14407 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

agcgtgttcggcatcacctttggcttcggctg	CRISPR spacer
ctcggcctcggcaacacctttgccttcggcgc	Protospacer
  **  .****** ******** *******

17. spacer 7.11|3157293|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to MN234174 (Mycobacterium phage Efra2, complete genome) position: , mismatch: 9, identity: 0.719

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
gccgtgagcgtgacgccgcgcgtctggtgatc	Protospacer
  *********. *************  .*

18. spacer 7.11|3157293|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to MN234165 (Mycobacterium phage Yunkel11, complete genome) position: , mismatch: 9, identity: 0.719

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
gccgtgagcgtgacgccgcgcgtctggtgatc	Protospacer
  *********. *************  .*

19. spacer 7.11|3157293|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to MN234201 (Mycobacterium phage Guanica15, complete genome) position: , mismatch: 9, identity: 0.719

tgcgtgagcgtatcgccgcgcgtctgcgaaag	CRISPR spacer
gccgtgagcgtgacgccgcgcgtctggtgatc	Protospacer
  *********. *************  .*

20. spacer 8.5|3183115|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NC_007959 (Nitrobacter hamburgensis X14 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

attacgcctttttgcgattgcccggtttttgc	CRISPR spacer
tcgtcatctttttgcgattgggcggttttttc	Protospacer
 .  *..*************  ******** *

21. spacer 6.1|2799425|59|NZ_LT601384|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

-cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc	CRISPR spacer
tcagtgcac-gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctc	Protospacer
 *.* ****  **.**************************** ************   .*

22. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP046443 (Pseudomonas coronafaciens pv. coronafaciens strain B19001 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

23. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

24. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963392 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

25. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034079 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

26. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034080 (Pseudomonas syringae pv. pisi str. PP1 plasmid pPP1-2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

27. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NC_005918 (Pseudomonas syringae pv. maculicola strain ES4326 plasmid pPMA4326A, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

28. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047262 (Pseudomonas syringae pv. maculicola str. ES4326 plasmid pPma4326A, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

29. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026560 (Pseudomonas amygdali pv. morsprunorum strain R15244 plasmid p3_tig5, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

30. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963406 (Pseudomonas syringae pv. avii isolate CFBP3846 plasmid PP4, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

31. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to LT985193 (Pseudomonas syringae strain CFBP 2116 genome assembly, plasmid: PP2) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

32. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT963393 (Pseudomonas syringae pv. cerasicola isolate CFBP6109 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

33. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985210 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP1, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

34. spacer 7.7|3157047|33|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT985211 (Pseudomonas syringae pv. cerasicola strain CFBP 6110 plasmid PP2, complete sequence) position: , mismatch: 10, identity: 0.697

gcaggcggcgacgcgcagggtatgcgcgattcg	CRISPR spacer
accggcggcgacgcgcaggagatgcgcagcgaa	Protospacer
.* ****************. ******...  .

35. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052797 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N18S2039 plasmid pN18S2039, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

36. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052795 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0125 plasmid pN19S0125, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

37. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047882 (Salmonella enterica subsp. enterica serovar Infantis strain 119944 plasmid pESI, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

38. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052804 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S973 plasmid pN17S0973, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

39. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP038508 (Salmonella enterica subsp. enterica serovar Infantis strain FARPER-219 plasmid p-F219, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

40. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052802 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S976 plasmid pN17S0976, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

41. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052788 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0611 plasmid pN19S0611, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

42. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052840 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S024 plasmid pN16S024, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

43. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052786 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0641 plasmid pN19S0641, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

44. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052838 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S097 plasmid pN16S097, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

45. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028316 (Salmonella enterica subsp. enterica serovar Typhimurium var. 5- strain CFSAN067217 plasmid pSC-31-2, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

46. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP051676 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1234 plasmid pN16S1234, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

47. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052783 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0679 plasmid pN19S0679-1, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

48. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052836 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N16S103 plasmid pN16S103, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

49. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022063 (Salmonella enterica strain FDAARGOS_312 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

50. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052781 (Salmonella enterica strain CVM N19S0949 plasmid pN19S0949, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

51. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052834 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S041 plasmid pN17S0041, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

52. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052793 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0388 plasmid pN19S0388, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

53. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052779 (Salmonella enterica strain 19TN07GT06K-S plasmid pN19S1233, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

54. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052832 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1040 plasmid pN17S1040, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

55. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031362 (Salmonella enterica subsp. enterica serovar Heidelberg strain 5 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

56. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052830 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1105 plasmid pN17S1105, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

57. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052828 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1126 plasmid pN17S1126, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

58. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052826 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1245 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

59. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016409 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502916 plasmid pFSIS1502916, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

60. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052824 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1265 plasmid pN17S1265, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

61. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052822 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1349 plasmid pN17S1349, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

62. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016407 (Salmonella enterica subsp. enterica serovar Infantis strain FSIS1502169 plasmid pFSIS1502169, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

63. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052820 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1442 plasmid pN17S1442, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

64. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016413 (Salmonella enterica subsp. enterica serovar Infantis strain CVM44454 plasmid pCVM44454, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

65. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016411 (Salmonella enterica subsp. enterica serovar Infantis strain N55391 plasmid pN55391, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

66. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052816 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1598 plasmid pN17S1598) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

67. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052814 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S349 plasmid pN17S0349, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

68. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022662 (Salmonella enterica subsp. enterica strain RM11065 plasmid pRM11065-2, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

69. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052812 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S376 plasmid pN17S0376, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

70. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052810 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S535 plasmid pN17S0535, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

71. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052808 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S637 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

72. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052806 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S816 plasmid pN17S0816, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

73. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052791 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N19S0552 plasmid pN17S0637, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

74. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052818 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S1509 plasmid pN17S1509, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

75. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to CP052799 (Salmonella enterica subsp. enterica serovar Infantis strain CVM N17S990 plasmid pN17S0990-1, complete sequence) position: , mismatch: 10, identity: 0.688

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gaggcgctatcaaacacaaccgacagggagta	Protospacer
  ..*..****** .***************.

76. spacer 6.1|2799425|59|NZ_LT601384|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

cggagcacttattgccggatgcggcgtgaacgccttatccggcctacggttctggcacc-	CRISPR spacer
ggtacggctttttgccggatgcggcgtaaacgccttatccggcctacggtt-tggtgcga	Protospacer
 * *  .*** ****************.*********************** ***..*

77. spacer 7.9|3157171|32|NZ_LT601384|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026128 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence) position: , mismatch: 11, identity: 0.656

tcaacattatcaattacaaccgacagggagcc	CRISPR spacer
gatacattgccaattacaaccgacagttcaaa	Protospacer
   *****..****************   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

826164 : 883349

Stx2-converting_phage(25.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068879433.1\|826164_827301_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_001546883.1\|829548_830535_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_068879435.1\|830584_831763_+	O15 family O-antigen polymerase	NA	NA	NA	NA
WP_066009094.1\|832841_833945_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA
WP_000734414.1\|833944_835075_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	6.3e-102	47.8
WP_000761611.1\|835074_836286_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_001236679.1\|836272_836671_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_000043483.1\|836788_838195_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.4e-37	28.3
WP_000704860.1\|838442_839609_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.7e-110	52.2
WP_001389124.1\|839754_840732_+	LPS O-antigen chain length determinant protein WzzB	NA	NA	NA	NA
WP_066009098.1\|840827_841439_-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA	NA	NA	NA
WP_000880192.1\|841432_842209_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_000586449.1\|842190_842928_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_001103560.1\|842927_843518_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_000080136.1\|843517_844585_-	bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_000108941.1\|844584_845655_-	histidinol-phosphate transaminase	NA	NA	NA	NA
WP_001743908.1\|845657_846956_-	histidinol dehydrogenase	NA	NA	NA	NA
WP_000131782.1\|846961_847861_-	ATP phosphoribosyltransferase	A0A0F7Q4B0	Cellulophaga_phage	1.8e-11	94.7
WP_001364200.1\|848006_848057_-	his operon leader peptide	NA	NA	NA	NA
WP_001259255.1\|848339_848591_+	YoeB-YefM toxin-antitoxin system antitoxin YefM	NA	NA	NA	NA
WP_000767829.1\|848587_848842_+	type II toxin-antitoxin system mRNA interferase toxin YoeB	NA	NA	NA	NA
WP_000754762.1\|848924_849749_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000803360.1\|849794_850724_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_010723108.1\|850938_851001_+	membrane protein YoeI	NA	NA	NA	NA
WP_000019197.1\|850990_852349_+	putrescine/proton symporter PlaP	NA	NA	NA	NA
WP_000492305.1\|852527_853586_+	transport protein YeeE	NA	NA	NA	NA
WP_000985273.1\|853599_853827_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_000980601.1\|853869_855297_-	exodeoxyribonuclease I	NA	NA	NA	NA
WP_000830155.1\|855505_856672_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	6.5e-227	99.0
WP_001105412.1\|856790_857264_+	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_001200891.1\|857462_858521_+	FUSC family protein	NA	NA	NA	NA
WP_000450409.1\|858692_859022_+	DUF496 family protein	NA	NA	NA	NA
WP_001667686.1\|859122_859305_-	ethanolamine utilization - propanediol utilization family protein	NA	NA	NA	NA
WP_072170041.1\|859578_860361_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.3e-138	99.2
WP_000255946.1\|860357_861380_-\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4
WP_068879436.1\|862924_864466_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	5.4e-128	46.1
WP_001161660.1\|865490_865604_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000976829.1\|865616_865823_-	hypothetical protein	NA	NA	NA	NA
WP_000854765.1\|865819_866194_-	toxin	NA	NA	NA	NA
WP_001360327.1\|866283_866652_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_023356553.1\|866814_867036_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	5.5e-10	44.4
WP_001186774.1\|867098_867575_-	RadC family protein	NA	NA	NA	NA
WP_000855059.1\|867590_868064_-	antirestriction protein	A9J566	Pseudomonas_phage	1.5e-12	30.3
WP_001339397.1\|868447_869125_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|869124_869472_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|869491_871063_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_171844372.1\|870983_871835_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	3.6e-41	39.6
WP_001323397.1\|871989_872148_-	DUF905 family protein	NA	NA	NA	NA
WP_068879437.1\|872218_875065_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_068879438.1\|875436_876309_-	GTPase family protein	NA	NA	NA	NA
WP_054623649.1\|876393_877311_-	hypothetical protein	NA	NA	NA	NA
WP_001329788.1\|878142_878340_-	hypothetical protein	NA	NA	NA	NA
WP_000813436.1\|878510_879113_-	hypothetical protein	NA	NA	NA	NA
WP_001329787.1\|879207_879486_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000840364.1\|879554_879821_+	hypothetical protein	NA	NA	NA	NA
WP_001344112.1\|880121_880298_+	hemolysin activation protein	NA	NA	NA	NA
WP_102384962.1\|880849_882078_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_171844373.1\|882153_883349_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	5.6e-165	96.5

DBSCAN-SWA_2

1614791 : 1686458

Escherichia_phage(32.84%)

head,portal,transposase,protease,capsid,holin,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000422045.1\|1614791_1615841_-\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_000559286.1\|1616060_1616819_+	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.9
WP_001278906.1\|1616815_1617406_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_001291217.1\|1617445_1618321_-	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_066009307.1\|1618531_1620427_-	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001295575.1\|1620454_1621075_-	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001285661.1\|1621071_1621953_-	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001700591.1\|1622090_1622135_+	trp operon leader peptide	NA	NA	NA	NA
WP_001194582.1\|1622225_1623788_+	anthranilate synthase component I	NA	NA	NA	NA
WP_000763511.1\|1623787_1625383_+	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	3.8e-52	38.5
WP_000983871.1\|1625383_1626745_+	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	4.3e-36	40.2
WP_066009309.1\|1626756_1627950_+	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000443067.1\|1627949_1628756_+	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000807651.1\|1629136_1629316_+	general stress protein	NA	NA	NA	NA
WP_001056490.1\|1629401_1629902_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001079505.1\|1629947_1630454_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000251936.1\|1630942_1631113_-	hypothetical protein	A0A0U2RK60	Escherichia_phage	9.4e-10	62.5
WP_000937495.1\|1631227_1631497_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
WP_134388450.1\|1631553_1632222_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001421220.1\|1632420_1632603_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.4e-24	95.0
WP_068879450.1\|1632830_1633616_+\|tail	phage tail protein	Q858V4	Yersinia_virus	2.8e-109	77.4
WP_066009305.1\|1633617_1634145_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	3.4e-90	93.7
WP_066009303.1\|1634173_1634707_-\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	6.9e-83	86.4
WP_077884781.1\|1634709_1637514_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q858V4	Yersinia_virus	4.4e-03	62.8
WP_032230005.1\|1637665_1638265_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	7.7e-107	94.0
WP_066009239.1\|1638332_1641806_-	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.9
WP_122999438.1\|1642046_1642679_-\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	1.0e-101	97.6
WP_021565969.1\|1642624_1643368_-\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	3.3e-147	97.2
WP_001375867.1\|1643378_1644077_-\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	4.2e-128	96.1
WP_000807924.1\|1644076_1644418_-\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	2.4e-60	96.5
WP_021520064.1\|1644410_1647653_-\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	93.3
WP_001513217.1\|1647700_1647910_-	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000710949.1\|1648005_1648380_-\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001275441.1\|1648394_1649111_-	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000133388.1\|1649175_1649520_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573362.1\|1649516_1649963_-	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	99.3
WP_001007905.1\|1649959_1650310_-\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000125990.1\|1650319_1650646_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_032167421.1\|1650642_1653228_-\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	99.9
WP_001063099.1\|1653173_1653395_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000173030.1\|1653439_1655377_-\|capsid	phage major capsid protein	B6ETE8	Enterobacteria_phage	0.0e+00	100.0
WP_001339613.1\|1655439_1657101_-\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	99.1
WP_000958372.1\|1657097_1657661_-\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	3.3e-83	92.5
WP_000829185.1\|1657950_1658316_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000095741.1\|1658357_1658558_+	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000736383.1\|1658756_1658981_-	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|1659066_1659252_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_032140280.1\|1659473_1659560_-	hypothetical protein	NA	NA	NA	NA
WP_000992067.1\|1660114_1660648_-	lysozyme	Q6H9V6	Enterobacteria_phage	1.1e-99	94.9
WP_000369850.1\|1660753_1661026_+	hypothetical protein	NA	NA	NA	NA
WP_000193278.1\|1660991_1661336_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
WP_000284510.1\|1661340_1661556_-\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_032167420.1\|1661706_1663560_-	SASA family carbohydrate esterase	H6WZJ9	Escherichia_phage	0.0e+00	94.3
WP_000871291.1\|1663820_1664156_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_001333559.1\|1664226_1664439_+	hypothetical protein	NA	NA	NA	NA
WP_106104550.1\|1664927_1665014_-	DUF3927 family protein	NA	NA	NA	NA
WP_000935516.1\|1665311_1666361_-	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	2.3e-199	96.0
WP_000917767.1\|1666511_1666709_-	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_000762880.1\|1666935_1667757_-	antitermination protein	K7P7B9	Enterobacteria_phage	8.5e-80	60.1
WP_000904114.1\|1667753_1668128_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.1e-34	62.7
WP_001265091.1\|1668140_1669187_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	55.0
WP_001403449.1\|1669188_1669461_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.0e-10	47.5
WP_000687431.1\|1669520_1669694_-	hypothetical protein	A0A0U2I1S4	Escherichia_phage	6.8e-16	68.5
WP_000401168.1\|1669851_1670955_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_001004956.1\|1670935_1671586_-	hypothetical protein	NA	NA	NA	NA
WP_000967408.1\|1671751_1671964_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.1e-26	94.3
WP_000350274.1\|1672198_1672432_-	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	2.8e-36	100.0
WP_102384962.1\|1672472_1673701_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_000207997.1\|1673875_1674043_-	hypothetical protein	A0A192Y6F5	Salmonella_phage	2.1e-14	89.4
WP_000224216.1\|1674053_1674317_-	hypothetical protein	A0A2P0P958	Salmonella_phage	3.9e-31	73.6
WP_001142588.1\|1674318_1674537_-	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	3.6e-30	93.1
WP_000510387.1\|1674538_1674754_-	hypothetical protein	A0A222YWK2	Escherichia_phage	2.2e-35	94.4
WP_001289989.1\|1674754_1675114_-	hypothetical protein	A0A076GCN9	Escherichia_phage	1.7e-37	73.5
WP_000753053.1\|1675110_1675287_-	hypothetical protein	A0A2R2X2A8	Escherichia_phage	3.3e-26	93.1
WP_001224665.1\|1675279_1675462_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	9.1e-27	98.3
WP_000403782.1\|1675557_1675914_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.4e-58	99.2
WP_001209470.1\|1675891_1676353_-	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	1.3e-37	92.9
WP_001266130.1\|1676349_1676646_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.2e-47	95.8
WP_001141099.1\|1676642_1677035_-	DUF977 family protein	A0A088CBK9	Shigella_phage	1.5e-39	63.3
WP_000450705.1\|1677050_1677821_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	9.7e-86	67.6
WP_001309414.1\|1677854_1678397_-	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_066009535.1\|1678308_1679349_-	phage replisome organizer	A0A0U2RT81	Escherichia_phage	1.0e-98	89.8
WP_000702041.1\|1679420_1679846_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001053425.1\|1679829_1680105_-	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	1.1e-39	97.6
WP_000753626.1\|1680212_1680674_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	7.6e-78	99.3
WP_000379612.1\|1680927_1681083_+	DUF1391 family protein	M4QQ57	Salicola_phage	6.8e-07	51.1
WP_001171958.1\|1681242_1681461_+	hypothetical protein	NA	NA	NA	NA
WP_001586951.1\|1681483_1681804_+	hypothetical protein	NA	NA	NA	NA
WP_001351093.1\|1681781_1682219_-	hypothetical protein	NA	NA	NA	NA
WP_001586950.1\|1682632_1683487_+	Rha family phage regulatory protein	A0A0P0ZE80	Stx2-converting_phage	3.6e-65	63.2
WP_000450218.1\|1683497_1683686_+	cell division inhibitor	NA	NA	NA	NA
WP_001093951.1\|1683682_1683886_+	DUF1482 family protein	NA	NA	NA	NA
WP_021533631.1\|1683965_1686458_+	exonuclease	A0A192Y6E0	Salmonella_phage	5.0e-59	58.8

DBSCAN-SWA_3

1910997 : 1951035

Enterobacteria_phage(36.36%)

integrase,transposase

attL 1909948:1909966|attR 1951372:1951390

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1909948:1909966	attL	NA	NA	NA	NA
WP_001735705.1\|1910997_1912497_+\|transposase	IS21-like element ISEc10 family transposase	NA	NA	NA	NA
WP_000065240.1\|1912493_1913249_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.2e-33	33.9
WP_044704957.1\|1913404_1913893_-	hypothetical protein	NA	NA	NA	NA
WP_066009386.1\|1913889_1914267_-	toxin	NA	NA	NA	NA
WP_001280955.1\|1914313_1914688_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_001220314.1\|1914850_1915072_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	3.2e-10	44.4
WP_001186192.1\|1915134_1915611_-	RadC family protein	NA	NA	NA	NA
WP_023910464.1\|1915626_1916112_-	antirestriction protein	A9J566	Pseudomonas_phage	4.4e-12	31.0
WP_001234682.1\|1916202_1917021_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.0e-45	38.4
WP_053886242.1\|1917360_1918431_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203541.1\|1918427_1919333_-	chemotaxis protein	NA	NA	NA	NA
WP_066008961.1\|1919329_1921714_-	dynamin family protein	NA	NA	NA	NA
WP_068879452.1\|1921931_1922804_-	GTPase family protein	NA	NA	NA	NA
WP_023910471.1\|1923134_1923317_+	hypothetical protein	NA	NA	NA	NA
WP_053886252.1\|1923616_1924042_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.3e-47	96.9
WP_031326669.1\|1925857_1926238_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_157922190.1\|1926236_1926644_+	hypothetical protein	NA	NA	NA	NA
WP_066009555.1\|1926966_1927473_-	hypothetical protein	NA	NA	NA	NA
WP_000527471.1\|1927670_1927844_-	hypothetical protein	NA	NA	NA	NA
WP_001539577.1\|1928215_1928659_-	Dr fimbrial tip invasin DraD	NA	NA	NA	NA
WP_001330421.1\|1931297_1932095_-	Dr fimbrial biogenesis chaperone DraB	NA	NA	NA	NA
WP_001209230.1\|1932434_1932740_-	hypothetical protein	NA	NA	NA	NA
WP_066008899.1\|1933590_1934763_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.0e-227	99.2
WP_000544830.1\|1934762_1935560_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.9e-145	99.6
WP_000700580.1\|1935793_1936021_+	F1845 fimbrial adhesin operon transcriptional regulator DaaF	NA	NA	NA	NA
WP_053886233.1\|1936305_1937214_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.7e-55	46.1
WP_066008901.1\|1938032_1940120_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	3.4e-08	31.5
WP_000555380.1\|1940697_1941831_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_053886234.1\|1942690_1943269_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_088895425.1\|1944194_1945422_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3
WP_066009346.1\|1945923_1947759_-	hypothetical protein	NA	NA	NA	NA
WP_000070931.1\|1947859_1948147_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_077820283.1\|1948118_1949648_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000279860.1\|1949817_1951035_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	6.5e-44	34.7
1951372:1951390	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2108359 : 2186071

Stx2-converting_phage(30.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886683.1\|2108359_2109652_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067755.1\|2109742_2111086_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|2111096_2111708_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077038.1\|2111866_2115856_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|2115990_2116485_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537418.1\|2117029_2117995_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_001043600.1\|2118117_2119884_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	7.0e-23	24.3
WP_001202175.1\|2119884_2121606_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	9.9e-22	25.4
WP_001241678.1\|2121647_2122352_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|2122636_2122855_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_068879455.1\|2123346_2124189_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000839256.1\|2124273_2124471_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_001054233.1\|2124487_2124976_-	hypothetical protein	NA	NA	NA	NA
WP_000854686.1\|2124972_2125356_-	toxin	NA	NA	NA	NA
WP_001285602.1\|2125436_2125817_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_000086768.1\|2125827_2126511_-	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	9.0e-27	35.1
WP_000692298.1\|2126529_2126751_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_021543704.1\|2126813_2127290_-	RadC family protein	NA	NA	NA	NA
WP_000214307.1\|2127305_2127791_-	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
WP_068879456.1\|2127882_2128701_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	2.6e-44	38.2
WP_001119727.1\|2128801_2129035_-	DUF905 family protein	NA	NA	NA	NA
WP_000581502.1\|2129113_2129569_-	hypothetical protein	NA	NA	NA	NA
WP_068879457.1\|2129644_2132161_-	hypothetical protein	NA	NA	NA	NA
WP_068879458.1\|2132281_2135128_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_001397970.1\|2135499_2136372_-	GTPase family protein	NA	NA	NA	NA
WP_032171640.1\|2136587_2137532_-	hypothetical protein	NA	NA	NA	NA
WP_154670580.1\|2137994_2138249_-	hypothetical protein	NA	NA	NA	NA
WP_001431807.1\|2138530_2138770_+	hypothetical protein	NA	NA	NA	NA
WP_000985465.1\|2138809_2141248_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.9e-74	37.4
WP_000312833.1\|2142593_2143250_+	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_000634203.1\|2143246_2144314_+	macro domain-containing protein	B0FIJ9	Escherichia_phage	1.4e-18	39.2
WP_000108735.1\|2144332_2147428_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	3.9e-53	28.2
WP_001122107.1\|2147427_2148144_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_001339397.1\|2148722_2149400_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|2149399_2149747_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|2149766_2151338_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_021543690.1\|2152944_2153292_-	hypothetical protein	NA	NA	NA	NA
WP_126722400.1\|2153817_2154270_-	hypothetical protein	NA	NA	NA	NA
WP_066009371.1\|2154440_2154875_-	adhesin	NA	NA	NA	NA
WP_077884783.1\|2154890_2155856_-	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_102384962.1\|2155840_2157069_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_077884989.1\|2157144_2158821_-	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_032145366.1\|2158851_2159610_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_171844374.1\|2166218_2166359_+	hypothetical protein	NA	NA	NA	NA
WP_068879459.1\|2167399_2168053_+	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_000624622.1\|2174182_2174530_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000381395.1\|2174549_2176121_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_068879460.1\|2180396_2181530_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_021523955.1\|2182409_2183207_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_048206690.1\|2184792_2184999_-\|transposase	transposase domain-containing protein	A0A0P0ZEB3	Stx2-converting_phage	1.6e-11	66.0
WP_066008841.1\|2185099_2186071_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2209292 : 2251780

Stx2-converting_phage(33.33%)

integrase,transposase,protease

attL 2228480:2228495|attR 2253352:2253367

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000483766.1\|2209292_2210639_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_001505166.1\|2210994_2211207_-	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_001254932.1\|2212879_2214031_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_001171554.1\|2214125_2214506_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000612591.1\|2214502_2214850_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_068879466.1\|2214899_2216438_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-282	95.5
WP_068879467.1\|2217380_2218394_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_000998350.1\|2218405_2219722_-	L-fucose:H+ symporter permease	NA	NA	NA	NA
WP_000350265.1\|2219749_2220670_-	ribokinase	NA	NA	NA	NA
WP_102384962.1\|2222566_2223794_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_001411495.1\|2224000_2224138_-	hypothetical protein	NA	NA	NA	NA
WP_000072197.1\|2225504_2226329_-	aga operon transcriptional regulator AgaR	NA	NA	NA	NA
WP_000195940.1\|2226511_2226916_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000192271.1\|2227029_2228601_+	PTS maltose transporter subunit IICB	NA	NA	NA	NA
2228480:2228495	attL	NA	NA	NA	NA
WP_000459228.1\|2228612_2229788_+	putative C-S lyase	NA	NA	NA	NA
WP_066009464.1\|2229801_2231691_+	enterotoxin	NA	NA	NA	NA
WP_024167628.1\|2231859_2232066_-	methyltransferase	NA	NA	NA	NA
WP_000622487.1\|2232170_2233607_-	hypothetical protein	NA	NA	NA	NA
WP_061088962.1\|2233603_2238562_-	AAA family ATPase	NA	NA	NA	NA
WP_000282077.1\|2239224_2239788_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_102384962.1\|2240506_2241735_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_000335702.1\|2241944_2243378_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000579535.1\|2243596_2243794_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_001303889.1\|2244020_2244317_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_000282209.1\|2245428_2247246_+	hypothetical protein	NA	NA	NA	NA
WP_000279872.1\|2247432_2248635_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.9e-44	34.4
WP_000934041.1\|2249152_2251429_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|2251459_2251780_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
2253352:2253367	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2587398 : 2644846

Enterobacteria_phage(32.0%)

lysis,head,portal,transposase,protease,capsid,integrase,tail,tRNA

attL 2586930:2586976|attR 2634655:2634701

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2586930:2586976	attL	NA	NA	NA	NA
WP_001201825.1\|2587398_2588352_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001226382.1\|2588538_2590023_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_029237390.1\|2590569_2591229_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000355612.1\|2591422_2591716_-	hypothetical protein	NA	NA	NA	NA
WP_000235966.1\|2591726_2592431_-\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	1.2e-58	61.7
WP_000654154.1\|2592440_2592722_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.2e-17	47.8
WP_071836836.1\|2592718_2595115_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	3.9e-133	55.2
WP_021562711.1\|2595179_2595779_-	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	8.8e-111	99.0
WP_066009275.1\|2595848_2599262_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.0
WP_000090892.1\|2599321_2599954_-\|tail	tail assembly protein	C6ZCZ4	Enterobacteria_phage	2.7e-94	98.1
WP_021572741.1\|2599890_2600634_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.6e-148	96.4
WP_001152612.1\|2600639_2601338_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
WP_000847401.1\|2601337_2601667_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	6.0e-53	92.7
WP_001571447.1\|2604218_2604653_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	5.0e-63	98.3
WP_001552795.1\|2604634_2605057_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.2e-59	82.9
WP_000381395.1\|2605769_2607341_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7
WP_000624622.1\|2607360_2607708_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_001339397.1\|2607707_2608385_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000683128.1\|2608527_2608923_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
WP_000975070.1\|2608919_2609498_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.7e-80	100.0
WP_000753006.1\|2609509_2609863_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	4.4e-62	98.3
WP_074152574.1\|2609874_2610273_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	1.2e-60	96.2
WP_000063265.1\|2610314_2611340_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	8.7e-191	98.8
WP_001345004.1\|2611395_2611728_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.0e-55	99.1
WP_066009462.1\|2611737_2613057_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.0e-233	98.4
WP_066009460.1\|2613037_2614639_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	4.9e-310	99.1
WP_000198149.1\|2614635_2614842_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_000453576.1\|2616739_2617285_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.7e-95	99.4
WP_001307652.1\|2617673_2617868_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000738421.1\|2618228_2618522_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001228695.1\|2618612_2618795_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001135277.1\|2619011_2619509_-	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_000839596.1\|2619508_2619724_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737271.1\|2620312_2621395_+	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
WP_066008985.1\|2621583_2621967_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	5.7e-55	82.5
WP_001547120.1\|2621984_2622974_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.4e-191	97.3
WP_001061408.1\|2622981_2623779_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	7.5e-150	99.6
WP_001547119.1\|2623798_2624188_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	2.3e-67	98.4
WP_000210176.1\|2624184_2624511_-	LexA family transcriptional regulator	A0A0N7KZF7	Stx2-converting_phage	2.3e-52	97.2
WP_001573323.1\|2624510_2625005_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	6.2e-86	97.5
WP_066008989.1\|2625001_2625943_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	3.6e-151	98.4
WP_001250269.1\|2625932_2626112_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000515828.1\|2626287_2626839_-	protein YmfL	S5FXP0	Shigella_phage	2.6e-101	99.5
WP_001535859.1\|2626867_2627131_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	4.2e-09	50.0
WP_001535858.1\|2627237_2627942_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	3.4e-69	59.9
WP_000357060.1\|2629711_2630215_-	hypothetical protein	A0A077K9U2	Edwardsiella_phage	1.2e-31	47.6
WP_000135682.1\|2630676_2631039_+	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_001547115.1\|2631104_2631929_+	DUF2303 family protein	U5P439	Shigella_phage	1.0e-149	99.6
WP_001547114.1\|2632056_2632593_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	1.4e-99	97.8
WP_001242707.1\|2632583_2632946_+	phage protein	K7PH61	Enterobacteria_phage	4.4e-65	98.3
WP_000206813.1\|2632945_2633251_+	hypothetical protein	U5P0J0	Shigella_phage	1.4e-48	95.0
WP_001298992.1\|2633477_2634641_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000805428.1\|2634975_2635608_+	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
2634655:2634701	attR	NA	NA	NA	NA
WP_066008993.1\|2635610_2636126_-	fimbria assembly protein	NA	NA	NA	NA
WP_001350487.1\|2636136_2637177_-	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_000988364.1\|2639790_2640483_-	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_000776555.1\|2640702_2641245_-	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000729160.1\|2641715_2642582_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_000190288.1\|2642583_2642796_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_001143542.1\|2642903_2643425_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_000912385.1\|2643460_2644846_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	6.7e-45	34.5

DBSCAN-SWA_7

2933192 : 2999469

Enterobacteria_phage(18.18%)

integrase,plate,transposase

attL 2952604:2952619|attR 2983481:2983496

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_102384962.1\|2933192_2934421_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_001335904.1\|2934755_2935547_-	hypothetical protein	NA	NA	NA	NA
WP_072146520.1\|2936619_2936769_+	hemolysin activation protein	NA	NA	NA	NA
WP_001099653.1\|2937000_2937600_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_021534030.1\|2937971_2938355_+	hypothetical protein	NA	NA	NA	NA
WP_001013303.1\|2938351_2938777_+	hypothetical protein	NA	NA	NA	NA
WP_001189123.1\|2940909_2942418_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
WP_000597528.1\|2943583_2943934_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000057773.1\|2943946_2945539_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_024176379.1\|2945638_2946595_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_001178466.1\|2946844_2948398_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	1.9e-19	29.5
WP_000911138.1\|2948391_2949438_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_000197460.1\|2949437_2950436_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000155278.1\|2950462_2951485_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000774153.1\|2951513_2952389_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000558519.1\|2952437_2952728_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
2952604:2952619	attL	NA	NA	NA	NA
WP_001081495.1\|2952738_2953482_+	epimerase	NA	NA	NA	NA
WP_001333700.1\|2953856_2954114_+	hypothetical protein	NA	NA	NA	NA
WP_000132880.1\|2957787_2959494_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_001087767.1\|2959486_2960695_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_000772656.1\|2960936_2962145_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	7.7e-130	56.5
WP_000893278.1\|2962498_2963752_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	9.8e-96	47.2
WP_001285288.1\|2963763_2964867_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749867.1\|2965154_2966210_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.6e-118	61.1
WP_000174677.1\|2966248_2966650_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000189532.1\|2966707_2967952_-	esterase FrsA	NA	NA	NA	NA
WP_001291990.1\|2968043_2968502_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_001292994.1\|2968762_2970220_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001352051.1\|2970276_2970834_-	peptide chain release factor H	NA	NA	NA	NA
WP_001295202.1\|2970745_2971012_-	hypothetical protein	NA	NA	NA	NA
WP_001059892.1\|2971317_2971770_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001263488.1\|2971779_2972178_-	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_000554758.1\|2972180_2972474_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_001226164.1\|2972525_2973581_-	DNA polymerase IV	NA	NA	NA	NA
WP_000207552.1\|2973651_2974437_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001334802.1\|2974381_2976121_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000006255.1\|2976344_2976842_-\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_000056849.1\|2977017_2977767_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.0e-20	38.5
WP_000729703.1\|2977976_2978237_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_000615983.1\|2978239_2978518_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA
WP_001225679.1\|2978673_2979414_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000333380.1\|2979384_2980152_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284050.1\|2980357_2980936_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_066009639.1\|2981175_2983620_+	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA
2983481:2983496	attR	NA	NA	NA	NA
WP_000532698.1\|2983662_2984136_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_001118036.1\|2984289_2985060_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_068879476.1\|2985100_2986237_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_000008098.1\|2986667_2986844_-	hypothetical protein	NA	NA	NA	NA
WP_024198219.1\|2986827_2987061_-	hypothetical protein	NA	NA	NA	NA
WP_066008979.1\|2987038_2991271_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	6.4e-22	43.1
WP_000103354.1\|2991346_2993488_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.4e-25	25.0
WP_001142958.1\|2993697_2994216_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037397.1\|2994910_2995411_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000123970.1\|2995445_2995670_+	hypothetical protein	NA	NA	NA	NA
WP_000611744.1\|2997201_2997615_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393852.1\|2997618_2999469_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_8

3136051 : 3149225

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_068879478.1\|3136051_3138613_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.7
WP_001141322.1\|3138718_3139375_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	6.2e-49	46.3
WP_001300386.1\|3139425_3140193_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	56.3
WP_000847985.1\|3140388_3141297_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590403.1\|3141293_3142556_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-135	61.4
WP_001278994.1\|3142552_3143191_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_001136934.1\|3143195_3143972_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_000104441.1\|3144060_3145425_+	GntP family transporter	NA	NA	NA	NA
WP_066009455.1\|3145494_3146502_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.2e-32	37.6
WP_001272592.1\|3146564_3147704_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000254708.1\|3147843_3148470_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001295182.1\|3148463_3149225_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0

DBSCAN-SWA_9

3373749 : 3424160

Enterobacteria_phage(50.0%)

integrase,transposase,protease

attL 3385177:3385192|attR 3419628:3419643

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001309720.1\|3373749_3374508_+\|protease	metalloprotease LoiP	NA	NA	NA	NA
WP_000442530.1\|3374593_3376156_-	DUF1266 domain-containing protein	NA	NA	NA	NA
WP_000105566.1\|3376305_3377226_-	agmatinase	NA	NA	NA	NA
WP_000715527.1\|3377361_3378093_-	hypothetical protein	NA	NA	NA	NA
WP_001295380.1\|3378238_3380215_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_001297406.1\|3380223_3380355_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_001303650.1\|3380490_3380706_+	hypothetical protein	NA	NA	NA	NA
WP_001062128.1\|3381009_3382164_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	4.0e-128	63.2
WP_001112301.1\|3382600_3383995_+	galactose/proton symporter	NA	NA	NA	NA
WP_000858396.1\|3384071_3384569_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286500.1\|3384663_3385371_+	deoxyribonuclease I	NA	NA	NA	NA
3385177:3385192	attL	NA	NA	NA	NA
WP_001222509.1\|3385450_3386182_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593273.1\|3386194_3387145_+	glutathione synthase	NA	NA	NA	NA
WP_024174106.1\|3387253_3387817_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_000017111.1\|3387816_3388233_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_001305834.1\|3388347_3389328_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997795.1\|3389345_3390050_+	pyridoxal phosphate homeostasis protein	NA	NA	NA	NA
WP_001094831.1\|3390067_3390634_+	osmotic shock tolerance protein YggT	NA	NA	NA	NA
WP_001277222.1\|3390630_3390921_+	YggU family protein	NA	NA	NA	NA
WP_001174754.1\|3390928_3391522_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_000239947.1\|3391514_3392651_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000784004.1\|3392963_3393950_+	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_021542650.1\|3393994_3394498_+	TRAP transporter small permease	NA	NA	NA	NA
WP_066009196.1\|3394497_3395799_+	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_000745254.1\|3395854_3396862_-	DUF1202 family protein	NA	NA	NA	NA
WP_066009197.1\|3396978_3398025_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984795.1\|3398200_3398920_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001178592.1\|3398940_3399081_-	hypothetical protein	NA	NA	NA	NA
WP_001107564.1\|3399103_3399430_-	YggL family protein	NA	NA	NA	NA
WP_001309725.1\|3400310_3401363_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091700.1\|3401390_3401666_+	oxidative damage protection protein	NA	NA	NA	NA
WP_001298916.1\|3401730_3402810_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_001049791.1\|3403011_3404268_+	nucleoside permease NupG	NA	NA	NA	NA
WP_000839789.1\|3404316_3406452_-	ornithine decarboxylase	NA	NA	NA	NA
WP_000234514.1\|3406844_3407552_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001522333.1\|3407909_3409088_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	1.3e-121	52.8
WP_171844375.1\|3410301_3412986_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.7e-258	99.3
WP_113328817.1\|3413166_3414198_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_001522329.1\|3415460_3415943_-	Dr family adhesin structural subunit	NA	NA	NA	NA
WP_066009557.1\|3416144_3416318_-	DraP	NA	NA	NA	NA
WP_001522328.1\|3416696_3417140_-	hypothetical protein	NA	NA	NA	NA
WP_001522323.1\|3419778_3420576_-	Dr fimbrial biogenesis chaperone DraB	NA	NA	NA	NA
3419628:3419643	attR	NA	NA	NA	NA
WP_001522322.1\|3420829_3421135_-	hypothetical protein	NA	NA	NA	NA
WP_068879479.1\|3421935_3422193_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001522318.1\|3422631_3422874_-	hypothetical protein	NA	NA	NA	NA
WP_171844376.1\|3422947_3424160_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.5e-168	99.3

DBSCAN-SWA_10

4826541 : 4890778

Shigella_phage(14.29%)

integrase,transposase,tRNA,protease

attL 4820997:4821013|attR 4899895:4899911

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4820997:4821013	attL	NA	NA	NA	NA
WP_102384962.1\|4826541_4827769_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_102384962.1\|4828164_4829393_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-172	96.7
WP_001218773.1\|4830458_4831724_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	7.2e-78	38.3
WP_001188520.1\|4832103_4832679_-	transcriptional regulator	NA	NA	NA	NA
WP_000068922.1\|4832715_4834413_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_000883400.1\|4834388_4834727_-	divalent cation tolerance protein CutA	NA	NA	NA	NA
WP_000961959.1\|4834842_4836144_-	anaerobic C4-dicarboxylate transporter DcuA	NA	NA	NA	NA
WP_000069437.1\|4836261_4837698_-	aspartate ammonia-lyase	NA	NA	NA	NA
WP_001267448.1\|4838034_4838511_+	membrane protein FxsA	NA	NA	NA	NA
WP_000015837.1\|4838526_4839783_-	L-methionine/branched-chain amino acid transporter	NA	NA	NA	NA
WP_001026276.1\|4840058_4840352_+	co-chaperone GroES	K4F9I2	Cronobacter_phage	9.2e-13	45.4
WP_000729117.1\|4840395_4842042_+	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	5.3e-190	68.9
WP_000558209.1\|4842179_4842533_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_001008040.1\|4842735_4843605_-	hypothetical protein	NA	NA	NA	NA
WP_000940549.1\|4843999_4845028_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_000257278.1\|4845069_4845636_+	elongation factor P	NA	NA	NA	NA
WP_000977757.1\|4845687_4845813_+	lipoprotein antitoxin entericidin A	NA	NA	NA	NA
WP_000239596.1\|4845923_4846070_+	lipoprotein toxin entericidin B	NA	NA	NA	NA
WP_000118482.1\|4846245_4846563_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_001238378.1\|4846559_4847093_-	lipocalin Blc	A0A1W6JNX6	Morganella_phage	2.7e-47	55.0
WP_001336292.1\|4847181_4848315_-	BlaEC family class C beta-lactamase	NA	NA	NA	NA
WP_000609663.1\|4848377_4848737_-	fumarate reductase subunit FrdD	NA	NA	NA	NA
WP_000208757.1\|4848747_4849143_-	fumarate reductase subunit FrdC	NA	NA	NA	NA
WP_000829498.1\|4849153_4849888_-	fumarate reductase iron-sulfur protein	NA	NA	NA	NA
WP_001192973.1\|4849880_4851689_-	fumarate reductase (quinol) flavoprotein subunit	NA	NA	NA	NA
WP_000004771.1\|4852013_4852991_+	elongation factor P--(R)-beta-lysine ligase	A0A2K9KZX5	Tupanvirus	6.8e-28	28.2
WP_001336293.1\|4853209_4854712_+	glutamate/gamma-aminobutyrate family transporter YjeM	NA	NA	NA	NA
WP_000342867.1\|4854763_4855078_+	hypothetical protein	NA	NA	NA	NA
WP_001276180.1\|4855074_4855389_+	YjeO family protein	NA	NA	NA	NA
WP_001236847.1\|4855417_4858741_-	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA
WP_000934920.1\|4858762_4859731_-	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_000041964.1\|4859827_4860880_-	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_001295188.1\|4860974_4861520_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-28	40.4
WP_010723271.1\|4862262_4862316_+	hypothetical protein	NA	NA	NA	NA
WP_001294219.1\|4862298_4863438_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_001295189.1\|4863436_4864984_+	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_000981977.1\|4864955_4865417_+\|tRNA	tRNA (N6-adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase TsaE	NA	NA	NA	NA
WP_000990333.1\|4865435_4866773_+	N-acetylmuramoyl-L-alanine amidase AmiB	A0A067ZJB6	Vibrio_phage	8.8e-18	31.0
WP_066009563.1\|4866782_4868624_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.1e-58	41.3
WP_001280345.1\|4868616_4869567_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_001051883.1\|4869652_4869961_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_000460360.1\|4870036_4871317_+	GTPase HflX	NA	NA	NA	NA
WP_000312488.1\|4871402_4872662_+\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5
WP_001232412.1\|4872664_4873669_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_001089295.1\|4873750_4873948_+	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_033549920.1\|4874051_4875350_+	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001177639.1\|4875554_4875980_+	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000076332.1\|4876018_4878460_+	ribonuclease R	Q0GXV6	Lactococcus_phage	3.8e-67	33.1
WP_001293282.1\|4878639_4879371_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000400400.1\|4879447_4880227_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_000842401.1\|4880555_4881449_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_001284215.1\|4881499_4882801_+	MFS transporter	NA	NA	NA	NA
WP_001424054.1\|4882834_4884430_+	altronate dehydratase	NA	NA	NA	NA
WP_000012563.1\|4885787_4886447_+	YjfK family protein	NA	NA	NA	NA
WP_000547760.1\|4886464_4886863_+	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000944017.1\|4887513_4888677_+	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	4.1e-80	43.5
WP_000558727.1\|4888760_4890386_+	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000811566.1\|4890502_4890778_-\|protease	protease activator YjfN	NA	NA	NA	NA
4899895:4899911	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4953387 : 5029151

Enterobacteria_phage(14.29%)

integrase,transposase,tRNA,holin

attL 4946335:4946350|attR 5003201:5003216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4946335:4946350	attL	NA	NA	NA	NA
WP_000416392.1\|4953387_4956243_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.8e-140	36.7
WP_000786399.1\|4956242_4956686_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397144.1\|4957039_4958551_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000584114.1\|4958817_4959918_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001422763.1\|4959917_4961000_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_032230423.1\|4961118_4962621_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	3.6e-84	44.8
WP_066009171.1\|4962698_4963697_-	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA
WP_066009173.1\|4963763_4965083_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
WP_000998695.1\|4965147_4965912_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_001422766.1\|4965935_4966967_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
WP_000896741.1\|4967182_4967746_+	gluconokinase	NA	NA	NA	NA
WP_000061766.1\|4967749_4968769_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.4
WP_000142490.1\|4969198_4970125_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_001223819.1\|4970114_4971734_-	TraI domain-containing protein	NA	NA	NA	NA
WP_001082109.1\|4972036_4972948_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	5.5e-48	37.6
WP_001143292.1\|4973033_4973327_-	hypothetical protein	NA	NA	NA	NA
WP_000202280.1\|4973694_4974567_-	HNH endonuclease	NA	NA	NA	NA
WP_000886597.1\|4974811_4976635_-	hypothetical protein	NA	NA	NA	NA
WP_000236931.1\|4976627_4979597_-	ATP-binding protein	A0A1B5FPD5	Escherichia_phage	7.3e-81	32.9
WP_000643690.1\|4979690_4980887_-	DNA cytosine methyltransferase	A0A191SAU1	Nostoc_phage	2.2e-36	30.8
WP_125079971.1\|4981159_4981684_-	hypothetical protein	NA	NA	NA	NA
WP_000950585.1\|4981693_4982731_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_068879494.1\|4982714_4983383_-	hypothetical protein	NA	NA	NA	NA
WP_001099275.1\|4984257_4984554_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001104341.1\|4985183_4986260_+	Fic family protein	NA	NA	NA	NA
WP_001825864.1\|4986310_4986940_-	hypothetical protein	NA	NA	NA	NA
WP_001114712.1\|4987850_4988675_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_066009509.1\|4988840_4990397_+	PTS transporter subunit EIIC	NA	NA	NA	NA
WP_000859648.1\|4990396_4991086_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_001215043.1\|4991197_4991362_+	hypothetical protein	NA	NA	NA	NA
WP_066009507.1\|4993331_4994363_-	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	2.3e-18	27.0
WP_000916805.1\|4994633_4995077_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_000705930.1\|4995092_4995380_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000345347.1\|4995392_4996649_+	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_001327567.1\|4996895_4997150_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	8.0e-21	62.2
WP_000107474.1\|4997571_4998585_-	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_000350265.1\|4999939_5000860_-	ribokinase	NA	NA	NA	NA
WP_001295538.1\|5001165_5001948_+	DeoR family transcriptional regulator	NA	NA	NA	NA
WP_171844377.1\|5002800_5004029_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.1e-171	96.3
5003201:5003216	attR	NA	NA	NA	NA
WP_001422798.1\|5004482_5004611_+	alcohol dehydrogenase	NA	NA	NA	NA
WP_000145474.1\|5004791_5005448_-	TetR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_000625669.1\|5005693_5006971_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001293435.1\|5007033_5009031_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_001300030.1\|5011526_5012477_-	virulence factor VirK	NA	NA	NA	NA
WP_001825888.1\|5012481_5013570_-	putative hexosyltransferase CapU	NA	NA	NA	NA
WP_160371899.1\|5013572_5014415_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_000177057.1\|5015879_5016137_+	hypothetical protein	NA	NA	NA	NA
WP_000175459.1\|5016694_5017462_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	4.9e-13	24.8
WP_000684856.1\|5017462_5018419_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
WP_000125187.1\|5018415_5019414_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_000879164.1\|5019410_5020313_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000188260.1\|5020357_5022682_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_001068914.1\|5022768_5023722_-	fec operon regulator FecR	NA	NA	NA	NA
WP_001283626.1\|5023718_5024240_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_000555341.1\|5025160_5025418_+	hypothetical protein	NA	NA	NA	NA
WP_000823243.1\|5026168_5027527_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_000998019.1\|5027765_5029151_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT601384

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection