CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT606947	Polynucleobacter necessarius isolate PPGSP2 genome assembly, chromosome: I	2 crisprs	DEDDh,csa3,cas3	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT606947_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT606947_1

901133-901389

Orphan

Consensus_repeat	Method
GGCGTCATCACAACCCTTAATAATTCAGG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_LT606947_1

>merge|NZ_LT606947|1|901133-901389|CRISPRCasFinder
GGCGTCATCACAACCCTTAATAATTCAGGCACCATAACTGTAGGTAGTGCTCATGGTGGCGGAAGCTGGGGCATTTCTAATGGAGGCGTCATCACAACCCTTAATAATTCAGGATCTATAAGCCTTCTTGATGATGGGTACGGTATATCCAATTCGAATGTAATTACTACCCTTAATAATTCAGGCTCGATAAATGTCGTGAATGGAAAGGGAATCTGGAATACTAGCGGCGCCATTACCACTCTTAACAACTCAGG

>NZ_LT606947|1|1|901133-901389|CRISPRCasFinder
GGCGTCATCACAACCCTTAATAATTCAGG	CACCATAACTGTAGGTAGTGCTCATGGTGGCGGAAGCTGGGGCATTTCTAATGGA
GGCGTCATCACAACCCTTAATAATTCAGG	ATCTATAAGCCTTCTTGATGATGGGTACGGTATATCCAATTCG
AATGTAATTACTACCCTTAATAATTCAGG	CTCGATAAATGTCGTGAATGGAAAGGGAATCTGGAATACTAGC
GGCGCCATTACCACTCTTAACAACTCAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT606947.1\|WP_114691614.1\|900769_901018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691624.1\|914686_916237_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_LT606947.1\|WP_114691611.1\|897674_898184_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691609.1\|894167_895319_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_LT606947.1\|WP_114691608.1\|893332_894160_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_LT606947.1\|WP_114692492.1\|888579_889632_-\|cell-division-protein-ZipA	unknown	unknown	gnl\|CDD\|129010
NZ_LT606947.1\|WP_114691606.1\|886554_888570_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_LT606947.1\|WP_114691623.1\|913548_914653_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_LT606947.1\|WP_114691619.1\|908800_909496_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|131266
NZ_LT606947.1\|WP_114691613.1\|900501_900735_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691620.1\|909488_910751_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_LT606947.1\|WP_114691622.1\|911774_913520_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|182944
NZ_LT606947.1\|WP_114691621.1\|910797_911778_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226706
NZ_LT606947.1\|WP_114691625.1\|916320_916773_-\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|376823
NZ_LT606947.1\|WP_114691616.1\|903370_904339_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	unknown	unknown	gnl\|CDD\|270295
NZ_LT606947.1\|WP_114691612.1\|898180_900124_-\|potassium-transporter-Kup	unknown	unknown	gnl\|CDD\|225700
NZ_LT606947.1\|WP_114691610.1\|895353_896250_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_LT606947.1\|WP_114691607.1\|889650_893172_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_LT606947.1\|WP_114691618.1\|907943_908804_-\|TatD-family-deoxyribonuclease	unknown	unknown	gnl\|CDD\|238635
NZ_LT606947.1\|WP_114691617.1\|905222_905435_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT606947.1\|WP_114691608.1\|893332_894160_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_LT606947.1\|WP_114691624.1\|914686_916237_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_LT606947.1\|WP_114691609.1\|894167_895319_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_LT606947.1\|WP_114691622.1\|911774_913520_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
NZ_LT606947.1\|WP_114692492.1\|888579_889632_-\|cell-division-protein-ZipA	gnl\|CDD\|129010	smart00771, ZipA_C, ZipA, C-terminal domain (FtsZ-binding). C-terminal domain of ZipA, a component of cell division in E.coli. It interacts with the FtsZ protein in one of the initial steps of septum formation. The structure of this domain is composed of three alpha-helices and a beta-sheet consisting of six antiparallel beta-strands.	1.0734e-09
NZ_LT606947.1\|WP_114691606.1\|886554_888570_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_LT606947.1\|WP_114691623.1\|913548_914653_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_LT606947.1\|WP_114691619.1\|908800_909496_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|131266	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking].	4.56816e-105
NZ_LT606947.1\|WP_114691621.1\|910797_911778_+\|hypothetical-protein	gnl\|CDD\|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.45865e-24
NZ_LT606947.1\|WP_114691625.1\|916320_916773_-\|OsmC-family-peroxiredoxin	gnl\|CDD\|376823	pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.	3.40774e-13
NZ_LT606947.1\|WP_114691616.1\|903370_904339_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	9.8761e-141
NZ_LT606947.1\|WP_114691612.1\|898180_900124_-\|potassium-transporter-Kup	gnl\|CDD\|225700	COG3158, Kup, K+ transporter [Inorganic ion transport and metabolism].	0
NZ_LT606947.1\|WP_114691610.1\|895353_896250_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	3.36065e-136
NZ_LT606947.1\|WP_114691607.1\|889650_893172_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_LT606947.1\|WP_114691618.1\|907943_908804_-\|TatD-family-deoxyribonuclease	gnl\|CDD\|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	3.87937e-78
NZ_LT606947.1\|WP_114691620.1\|909488_910751_-\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	2.92051e-161

>NZ_LT606947.1|WP_114691614.1|900769_901018_+|hypothetical-protein
MGSISNKANNTIGDIATGNAIQNNSGSTISGIYNYGSLIAENAVWNDGTIASLYNYGAISSTNGGIWNNAGSINKIYTTLVQ
>NZ_LT606947.1|WP_114691613.1|900501_900735_-|hypothetical-protein
MVLVIDMLVLLFPIVKLPPVQTIPVEQELVIVVSEETEGQVCAPADTSQAVNKVKTSNFLIFEKFIWTGAIFWVNFD
>NZ_LT606947.1|WP_114691612.1|898180_900124_-|potassium-transporter-Kup
MSVSNQEFSQSSLLRPVEISRQEHGHPKGASFSLMLAAIGVVFGDIGTSPLYALKECFSPEHGIPFSNEAVYGVISMVFWAFAIVVSLKYVMFVMRANNHGEGGILALMALALRTAPTGSKRSLLIIMAGVFGACMFYGDAIITPAISVLSAVEGMEVISHDLTRYIIPVTIVILMSLFVIQKTGTAVVGNLFGPVMLIWFVVIGLMGVYQVIENPQIFAAINPLYAIQFMEEHALQGFIVLGAVFLVLTGAEALYADMGHFGAKPIRLGWFFIVMPCLILNYFGQGAMFLSHPENITNPFFLMVPEALVFPLVILATLATVIASQAVISGAFSMTSQAILLGFVPRMKIRHTSDREIGQIYMPLVNWTLLVLVIAVVLAFKKSENLAAAYGIAVTTTMIVTTFLAAIVMRVVWRWNTLLVTLVISAFLIVDLAFLSANLLKIMEGGWFPLLLGAACFLLLMTWYQGRKLLRQRAMEEGIELKGFIDVLMKNPPHRVEGTAIFLTVHVDYLPVSFLHNLKHNHVLHGRVFFLKVSIWDVPYVKDEERITLRDLGNNIFVVRAVYGFNETPDMGRIIELIEKSSGLKFNLMDTSFFLSRDTIVATDAPGMALWRERLFCWMYQNAGRQSDFFKIPANRLVELGAKVEI
>NZ_LT606947.1|WP_114691611.1|897674_898184_-|hypothetical-protein
MRRPITFRSLLSLGTFLLVCSFSSLVFATPAEEAQLEQLDKIEGELELQRDWAKYRWDKKNSECYQKYWVNSCLKDSRAEYRKEIDPIRAQEVELHEVQRKLRASIKDQRDVAKIAERASAEKAAERSANQKEFEEKQKAAAARAADVEQRRKDAPKRAQENKAGTQLD
>NZ_LT606947.1|WP_114691610.1|895353_896250_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MDPAPQQSLTLDQCIDQIAQRLEAADLHYGHGAIDAQSEALWIVSKQLDLSPTDALDHLERVMNAEQIAMAFEVTEIRISSRKPLAYILGEAWLMGVPFLSSEQSIVPRSWIAELIVDGSLEPWLPADGKALDLCTGNGSLAILLAMACPDIHVSACDISLPALAVASRNLDRHGLTSHVELFESDLWDALPEPHEDNLFDLIICNPPYVNANSMNALPAEYHAEPALALAGGDDGMDLIRRIIAGAPDYLSERGAILIEIGNEYEHFKRAFPQIPVIWMEVSAGDEQVLLIQAEDLR
>NZ_LT606947.1|WP_114691609.1|894167_895319_+|succinyl-diaminopimelate-desuccinylase
MSATLELTEALISCRSVTPADGGCQELIARRLQAIGFHTENVISGPESFQVTNLWAIKKGAAGDQGEVLMFAGHTDVVPAGPLEKWTNDPFTPTIRDGMLYGRGAADMKTSLAAFVVATEEFVITHQNHKGSVAFLITSDEEGPANDGTVIMCERLQKQGQRLDYCVIGEPTSVDQLGDMIKNGRRGSLSGKLRVKGIQAHIAYPHLGKNPIHISAPAIQALVETEWDKGNQYFQPTSFQISNIHAGTGANNVIPGELGIDFNFRFSTESKPEELRGRLESILTAAGVEFEIDWVLGGSPFITGDGALAGALRKAIKAETKVDTKLSTTGGTSDGRFIAKICKEVVEFGPLNATSHKIDECVIVDDVVPLKNIFRKTLEQLIA
>NZ_LT606947.1|WP_114691608.1|893332_894160_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSQSPQRIIEQAWENRANLSPEAISGEIRNAVNAVLEGLNTGSIRVAERRSVGKWEVNQWVKKAVLLSFRLEDNKPIGAGGYTQFYDKVPSKLEHYTAKDFANGGFRVVPPAMARRGSFIGKNAVLMPSYVNIGAYVGEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPIQAGPVIIEDNCFIGARSEVVEGVVIEENAVLSMGVYIGQSTKIYDRETGEIHYGRVPAGSVVVPGSLPSACGKYSLYAAIIVKKVDAQTRAKTAINELLRD
>NZ_LT606947.1|WP_114691607.1|889650_893172_-|chromosome-segregation-protein-SMC
MQLKSIKLSGFKSFVDPTHFEMPGQLIGVVGSNGCGKSNIIDAVRWVLGESRASELRGESMQDVIFNGSGLRKPSGRASVELIFDNSEGRAQGQWSAFTELGIKRVLTRDGNSSYYVNNQVVRRKDIQDIFLGTGMGPKGYAIIGQGAINRILEAKPEELRVFLEEAAGVSKYKERRKETASRLEDTKENLVRVEDILRELDQQVTRLEKQATVAERHAELSTEMKSQQQLLWFVRQIETGKEQERHANGIRDTQVSLEEQTAKMRHVETELETMRTEQYALQDKVSQAQGDLYQTNADVSQVESQIRYVQEARQRLQQQSQDLQAQLQRWTVQETDAAQAQCTAEQELGLAAEKEQALIADLSGLQEQMPAREEAYQVHARELNDARENLATIDRRLVSLGERVKAITTQVEELKARDTRLEAEFAGMRRPDAEALQTAIDRHAMAQRKVDEARQKAGEAQQRVPVADEARNTAQQQIQSANQELAQTEAKLTALTALQASVQAQGKIGPWLESKGLKESKRLWQELKVESGWEAALESVLRERLAAVTAKSVQETLTLANDAPPSRLAILLTENISPAHTAVPADFIPLLTRVQSAGAPRVAAVLQEWLDNIYIANSLEDALHRREKLPAGGAFVTQHGHLVSRVGVQLYAADSEQSGMLARAQEMEGLEKQLRAQKLIQSELQGELDQSVANYQAAHQTAEQTRIAAEQAVQEVHGFEVERMQLTQAEEKYSQRAEQIQGELSELRQQMEQLIQTQEQSAEELAQSEESKQGLQENLAIAQEKLELATQERDRLRESLRSSEMSAQEAAFATRSLQQRIADLQRDQSTARVQIMEIQDKQATSEQELETLSDEEAQDKLQGLLLARSAREVALANARTEQDALLHQLREADEVRLQIERSLQPMRDKVVDLQLREQAARLNFEQFATLLSDAEADLTALEASFSPDLKVGALQSEVTRLGNEIQSLGPVNMAALDELSSSRERKQFLDAQSADLNEAMQTLTDAIAKIDAETRDLLQGTFDQVNTHFGKLFPELFGGGHAELVMTGEEILDAGVQVMAQPPGKKNSSIYLLSGGEKALTAIALVFSLFLLNPAPFCLLDEVDASLDDANTLRYAQMVAKMSNKTQFVFISHNKITMEIAHQLIGVTMQEQGVSRIVAVDISSAVSMVEAA
>NZ_LT606947.1|WP_114692492.1|888579_889632_-|cell-division-protein-ZipA
MTMLGLSDLQFALAVIGLLILISVAILNLKYARARRKAKAAGEYSTDDRFAKEPSFGQGFAEAEERTEPSFGDIAVPTPSAPESFSIDPRIDCVITLRFDEGISGAEILEEINAWNDVPATSTARWMCEGLNADLDAAEDWEALRSEASYSELQLAIQLASRRGPIGVLELSDFCSRAQALVETLGSQIDMPSVNTMLESAKELDAMAAESDIQLSINVLFDEATPGANFDALMRKRGFRLSRNGRSYEFYSNGTLIFTSAEIDPNAAVKQVTLLLEVPLVSQEERAFERMLGEGIEIAQAAHGRLVDDNGINLTEAAVISIRQYLDVLYANLENGGVPAGSSTASRLFN
>NZ_LT606947.1|WP_114691606.1|886554_888570_-|NAD-dependent-DNA-ligase-LigA
MSSSSPTNLADRYAFLQAELARLEHAYYVLDNPIVPDSEYDRLYRELIETEANHPELITADSLSQRVGGIALKEFDSVTHAVPMLSLNNAFEDSELIAFDRRCREGLHVDQVDYAGELKFDGLAISLHYEYGSLVRAATRGDGASGEDVTANIKTIRAIPLKLSGDNIPAVLEVRGEVFMYLKDFQNMNQQAAAQGEKEFANPRNAAAGSLRQLDSKITAKRSLSFFAYGIGALEPQSWLPKTHEELLNAYVRLGLPVCSERRVLKSVEEILAFYNEVGAKRDSLPYDIDGVVYKVNSFAEQARLGFVSRAPRFALAHKFPAQEALTTVLGIDVQVGRTGAITPVARLSPVEVGGVTVTNATLHNEDEVKRKDVRIGDTVSVRRAGDVIPEVVSVVKERRPANATEFVMPKNCPVCDSHIERLADEAVARCSGGLFCGAQRKQALIHFAHRRALDIEGLGEKIVDQLVDHNLVRTPADLYRLGFTAITNLERMGEKSADNLIAAINQSRNTTLARFIFALGIRHVGETTAKDLANHYRSMHALMDATLEDLLTVKDVGPVVANSITSFMEEAHNREVIEQLLVSGMQLSVEEKVISAAVAGKTFVLTGTFPTMTRDEAKDLLEKAGAKVAGSVSKKTDYVVAGSDAGSKLTKAEELGVLVIDEASMLGLLD
>NZ_LT606947.1|WP_114691616.1|903370_904339_+|tripartite-tricarboxylate-transporter-substrate-binding-protein-BugE
MTLASKLIAVACGALISFGAIAQNYPSKPIKIIVPFAPGGSTDIIARSMADPLSKQLGQSVIVENKAGGGGSVGALEVVRAPKDGYTLGIATISTTASNPAINGKIGYDPLKDFTAITNIAATPNVIVVNPSFPAKDYKTFIEVIKKNPGKYSYASSGTGGIGHMQTKLFKSLTGTFIVHIPFRGAGPGLIDVVAGQAPIMFDNLPSALPFIKDGRLIPIVIAAPKRLAILPNVPTFSEVGLAPANRMAYYGLLGPAGLPKDVVDKIYAAAQKAVLDPAVRKRIEDTGSIINVNGPEAFSKEIAAEYATYKGVVAKQKLELE
>NZ_LT606947.1|WP_114691617.1|905222_905435_-|hypothetical-protein
MKKFIAALFLSLFVSQINAAMMPVDLSSVSGTSISSDHEHCQETSSISNPQDGKTNAPSATHYCCAVVQY
>NZ_LT606947.1|WP_114691618.1|907943_908804_-|TatD-family-deoxyribonuclease
MSDASTEHAWVDTHCHLDAPEFVGVLHDIVSMASSKGVRAILLPTVQASDWGRAKNLVNQYGNQIPGLVYALDIHPLYINQAQESDIDTLKNQIEQSLDDPRFVGIGEIGLDYFVEDLDPQRQEYFFHAQLDLAQQFQLPVILHVRRSQDAILKALRRRKVSSGIAHAFNGSHQQAEKFIELGFKLGFGGAATYDRALQIRRLLQDLPLESIVTETDALDIPLAWLKEEGGQFNESALLPRIAQQLADIRGISEEVFSKAVWQNAMQALPRWSSLMTNNPKPQSAS
>NZ_LT606947.1|WP_114691619.1|908800_909496_-|ATP-binding-cassette-domain-containing-protein
MSNSNPIILSALGLAKTYGKGATAVDVLKAIDLQVSASEKVAIVGSSGSGKSTLLHLLGGLDTPSAGTVILAEENLHKLPVRKLDQLRNQSLGFIYQFHHLLEEFSAVENVALPLRIRGLSNEESMERANTMLHAVGLARRVQHTPGELSGGERQRVAVARALVGNPACVLADEPTGNLDAETADGVFDLMLDIAREQSTAFVIVTHDPIRAKRCDRILHLERGVLKTFAQ
>NZ_LT606947.1|WP_114691620.1|909488_910751_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MLRLPIELEIGLRYTRSKRRKTVGKRDGFLSFISGISTAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLSHIEITAPDGLANWEPIALRVAAQPHVVGVAPMVSSQGLLSRENVMRGVAIRGVLPGEEGKVSDLPKQFVAGNIDDLKPGSFGVALGAQLANIVGARVGDRINLIVPENDLTPAGAMPRMRTLQVVGIVDSGHYEYDSSLAIMHWKDAAALLRLQDPSGLRVKVDDMQRAPEIAAELAQVVPQALWVSDWSRSNRNWFAAVQTERKMMFIILTLIIAVAAFNLVSTLVMTVNEKQADIAILRTMGASPGLIQRIFLVQGLAIGLLGSLSGVGLGLLIALNIDVIVPAIEAIFRVRFLPRDVYFISELPSDVRLSDVVTVGLMAFDLSVLATLYPSRRAAQVQPAEALRYE
>NZ_LT606947.1|WP_114691621.1|910797_911778_+|hypothetical-protein
MPPKIRGMTANLTSQRSASRRFTLMVSGEDAVDTGFEQNVPPRGLPHERFLLGDQLPIAPVLLLGQSDLAVNPNETIACLQPVHLHATRDHLILMTQNQIDLTANESAKLLQVALPFIEEDFGSKVLFQGQSDWFIPAGPFASLATHSIDQAHGRNIDWWMPRDTSNIGIAKLWRKLQNEIQMLWHIDSVNEEREQRRLPSINSLWISGIGKLADIQIPQSLKNVSQIYGGHPLLAGLSKYLGVPQQSDIDFSKLQNTFAWINRPENILGNLRNALLSNALDEIEIIDFPNGHSRHRIFTAKDLNKKSWAFWKKSEPLTWQEIISA
>NZ_LT606947.1|WP_114691622.1|911774_913520_+|single-stranded-DNA-specific-exonuclease-RecJ
MSVFSRRPFSDRTTNWLQQSGLHPLLARLYAARGIDKPDELSLDLKQLLSPVELKSCISTATLLADILERKEPMLVVADYDCDGATACAVALRGLKMLGGADTPIQFLVPNRFTMGYGLTPEVVDLAAQQNPKPKYLITVDNGIASEAGVDRARELGMEVIVTDHHLPSDRLPKATAIVNPNQPGCSFPSKALAGVGVMFYLLVALRAELRKRGKFTAETQPKIENLLDLVALGTVADVAQLDRNNRILVSNGLKRIRAGVSQAGIQALFQAAVRDPRKVNTFDLGFAIGPRLNAAGRLADMTLGIRLLLSDKADEATELAYELDRINRERRVIEGGMQETALAHLAEDQLAGTMADRSSICLWNPEWHQGVVGIVASRLKERFNRPAIVFAPADGASGKELRGSGRSLTGFHLRDALDIVSKREPGLILKFGGHAMAAGLSIRKADFEKFDVVFAQVANELLNDELLERRHIHDGSLDLSEFTPETGDLLAEEIWGQGFPQPIFYGEFEVGQQSLMKEKHLRLQLRPIGDGQLASKPFTGVWFNRTQPLPTKAKLAYRLVTDRFQRQARVQLMIESHDEG
>NZ_LT606947.1|WP_114691623.1|913548_914653_+|peptide-chain-release-factor-2
MEAEQLNIISNTLSDLLTREQALRGYLDFEVKSRRLTEVNSILEDPTIWDDQKKAQALGKEKKLLDGVVATLTDLNSNITGALELFDMAKEESDFETITVIEQDVESYSKIIHDLEFRRMFHNEMDSYNCFIDIQAGAGGTEACDWASMLFRQYLKYCERKGYKTEILEESDGDVVGIKSATIKVDGEYAYGHLRSETGVHRLVRKSPFDSSNGRHTSFASIYVYPEIDDSIEIDVNPADIRTDTYRASGAGGQHINKTDSAVRLTHLPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHEMQKRRAEQDKLEASKTDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDAFIEASLKQGV
>NZ_LT606947.1|WP_114691624.1|914686_916237_+|lysine--tRNA-ligase
MNDQVNSNQTPVTEAVDENHIIAERREKLVKLREGGVAFPNDFVPTHLAADLHTHYDSLTKEDLAAKKVHVKVAGRMVLKRVMGKASFATIQDRSGQIQFYINNEISGADTHGAFKHWDMGDFISAEGNLFKTNKGELSVECSNLRLLSKSLRPLPDKFHGLSDLETKYRQRYVDLIVNPESRNTFRARSNTIASLRRHMLDADFMEVETPMLHPIPGGATAKPFITHHNALDMQMFLRIAPELYLKRLVVGGFERVFEINRNFRNEGVSPSHNPEFTMMEFYVAYTDYRWLMDFTEGLIRATAIDAQGTAVLNHQGRELDLSKPFQRLTITEAILKYCSQSNKSYEPAQLEDAAFIRTELKKGGENPDSPTLKNAGIGALQLALFELVAESHLWEPTYIIDYPIEVSPLARESDTRPGITERFELFITGREIANGFSELNDAEDQANRFRKQVEQKKAGDEEAMYFDHDFIRALEYGMPPTGGCGIGIDRLVMLLTDAPNIRDVILFPHLRREEE
>NZ_LT606947.1|WP_114691625.1|916320_916773_-|OsmC-family-peroxiredoxin
MSGEPSVRLVQQADYQFAIHYNEDRDPIYGDEPPPLGRSQGATPSQFLLAGVANCLSDSLLFALRKFKQNPEPIETKASCEIGRNAENRLRILAIHVEIRIGVPGKTLENLDRVLAQFQDFCTVSSSVSLGISVNVTVFDSDNTRLYPAS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_LT606947_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT606947_2

1318049-1318126

Orphan

Consensus_repeat	Method
AGTTACTCACCAAGTTACTCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT606947_2

>merge|NZ_LT606947|2|1318049-1318126|CRISPRCasFinder
AGTTACTCACCAAGTTACTCACATCAACTGGGGTAAGCTACTCACACCCTGGGAAAGTTACTCACAAAGTTACTCACA

>NZ_LT606947|2|2|1318049-1318126|CRISPRCasFinder
AGTTACTCACCAAGTTACTCACA	TCAACTGGGGTAAGCTACTCACACCCTGGGAA
AGTTACTCACAAAGTTACTCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT606947.1\|WP_114691946.1\|1328549_1328837_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182532
NZ_LT606947.1\|WP_114691933.1\|1314957_1315458_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691943.1\|1325962_1326217_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223751
NZ_LT606947.1\|WP_114691929.1\|1312778_1313180_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369610
NZ_LT606947.1\|WP_114691928.1\|1312315_1312546_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376540
NZ_LT606947.1\|WP_114691940.1\|1324635_1325310_+\|maleylacetoacetate-isomerase	unknown	unknown	gnl\|CDD\|273527
NZ_LT606947.1\|WP_114692523.1\|1318386_1319199_-\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_LT606947.1\|WP_114691938.1\|1319298_1319709_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691932.1\|1314599_1314842_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_LT606947.1\|WP_114691936.1\|1317073_1317472_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271182
NZ_LT606947.1\|WP_114691941.1\|1325286_1325574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223751
NZ_LT606947.1\|WP_114691942.1\|1325530_1325893_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223751
NZ_LT606947.1\|WP_114691939.1\|1323924_1324554_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_LT606947.1\|WP_114691930.1\|1313237_1313495_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691945.1\|1328136_1328499_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691934.1\|1316309_1316546_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|377306
NZ_LT606947.1\|WP_114691931.1\|1313998_1314244_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT606947.1\|WP_114691935.1\|1316766_1316985_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271182
NZ_LT606947.1\|WP_114691937.1\|1317441_1318035_-\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_LT606947.1\|WP_114691944.1\|1326237_1326762_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051

Protein	Function_ID	Function_description	E-value
NZ_LT606947.1\|WP_114691946.1\|1328549_1328837_+\|hypothetical-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	0.00116583
NZ_LT606947.1\|WP_114691943.1\|1325962_1326217_-\|hypothetical-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	8.51935e-09
NZ_LT606947.1\|WP_114691937.1\|1317441_1318035_-\|DUF4102-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.16753e-23
NZ_LT606947.1\|WP_114691928.1\|1312315_1312546_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|376540	pfam01381, HTH_3, Helix-turn-helix. This large family of DNA binding helix-turn helix proteins includes Cro and CI. Within Neisseria gonorrhoeae NGO_0477, the full protein fold incorporates a helix-turn-helix motif, but the function of this member is unlikely to be that of a DNA-binding regulator, the function of most other members, so is not necessarily characteristic of the whole family.	6.57809e-10
NZ_LT606947.1\|WP_114691940.1\|1324635_1325310_+\|maleylacetoacetate-isomerase	gnl\|CDD\|273527	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism. [Energy metabolism, Amino acids and amines].	3.99193e-91
NZ_LT606947.1\|WP_114692523.1\|1318386_1319199_-\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.61228e-79
NZ_LT606947.1\|WP_114691934.1\|1316309_1316546_-\|ATP-binding-protein	gnl\|CDD\|377306	pfam04326, AlbA_2, Putative DNA-binding domain. This family belongs to the AlbA clan of DNA-binding domains.	3.51962e-10
NZ_LT606947.1\|WP_114691932.1\|1314599_1314842_-\|transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	0.0091204
NZ_LT606947.1\|WP_114691941.1\|1325286_1325574_-\|hypothetical-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	2.91777e-09
NZ_LT606947.1\|WP_114691936.1\|1317073_1317472_-\|hypothetical-protein	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.59144e-29
NZ_LT606947.1\|WP_114691942.1\|1325530_1325893_-\|hypothetical-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.60467e-08
NZ_LT606947.1\|WP_114691939.1\|1323924_1324554_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	2.08327e-44
NZ_LT606947.1\|WP_114691935.1\|1316766_1316985_-\|hypothetical-protein	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.20738e-17
NZ_LT606947.1\|WP_114691929.1\|1312778_1313180_+\|hypothetical-protein	gnl\|CDD\|369610	pfam07946, DUF1682, Protein of unknown function (DUF1682). The members of this family are all hypothetical eukaryotic proteins of unknown function. One member is described as being an adipocyte-specific protein, but no evidence of this was found.	0.00888632
NZ_LT606947.1\|WP_114691944.1\|1326237_1326762_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	1.09269e-80

>NZ_LT606947.1|WP_114691937.1|1317441_1318035_-|DUF4102-domain-containing-protein
METPVNEANRCIFKALNPGDRTTSHPDGEGLVLLCHPKKAMAWCYHYRFAGKAKMLSLGTYPDVSLKAARERRSAFKRLLASGVDPSLDRKEKKIRQGEVSENTFKAVAIRWHENWKANKSPDHVKRVYQCMEKDLFPHIGSRPINQISIQLLLMVVKKIDARGAYDIAKRAYETAGQVFRFAVALRACARPIRWLR
>NZ_LT606947.1|WP_114691936.1|1317073_1317472_-|hypothetical-protein
MCETNPVAQVKPADFLKLVTQENYKRVDAKELPQLLRDIDQYGITQKGDEITRFGLQLMAYIFVRTRELIGARWSEIDLKTKEWRIPPERMKMKDPHIVLMPDQVVTIFTRLNEITGGREFIFPSARDPKRR
>NZ_LT606947.1|WP_114691935.1|1316766_1316985_-|hypothetical-protein
MHEQGYPHEHIEIQLAHSERNKVSASYNHAKYLPQRKAMLQDWANYLDAIKTGADVIPFKAKAGQLNWGRKP
>NZ_LT606947.1|WP_114691934.1|1316309_1316546_-|ATP-binding-protein
MSFTIEKLNAWINLEAESEVLEFKGAKSQFDSNRLIEYCVAIANEKGGNIVLGVSDKKPRQVVGTQAYLDLVMRDWQI
>NZ_LT606947.1|WP_114691933.1|1314957_1315458_-|hypothetical-protein
MDIAKVYGGFGQVIQRYYEDDSEILHPQNPRMAQIAHCFESIGAAIPRLLKGDSSWDPRVALEIFPLIGWLICDAGIDIEAIKSQVRKESTKSANKARLNKAEMLTNKIGDLAAHWIVKYPEKSATELYEYLLSDLRNFARVNNIARGLSKREVIGKISRVKKSQA
>NZ_LT606947.1|WP_114691932.1|1314599_1314842_-|transcriptional-regulator
MNQKPKAVEVPMPEVLPLTGKSRWSGFKKFSPVSLGTFLTLSKQGRAPKAERLGVRCTFYDNAELHRWLSDPAGYIAGDQ
>NZ_LT606947.1|WP_114691931.1|1313998_1314244_-|hypothetical-protein
MRARQQLEALGFIRLTLQGSIASGGKKPNLYRFTDLGMYELPKYKLPAVKADYLYKSFREVREAKTALRLIKNQFNKKEEV
>NZ_LT606947.1|WP_114691930.1|1313237_1313495_+|hypothetical-protein
MQEHDWQTIVVNYRERVFWILVMVQMGAIHLFVVPNRSLIAWAKDQMGSWYYDDFIWMVIWIIVFGCILIISKALEKLAFLNLEQ
>NZ_LT606947.1|WP_114691929.1|1312778_1313180_+|hypothetical-protein
MRPKKISQSEAAKEIFIASKSYFPNDKLTQDYFQSLSEYTNQLAKKSITRKKFDELRYARAERYEAAMADRKEAAERAQRQAELENERMRQAQAAAYDEAIRQQRNAMAGAAALQGVGRAFNNSFGQSITPPP
>NZ_LT606947.1|WP_114691928.1|1312315_1312546_-|XRE-family-transcriptional-regulator
MWERELARKKNLLALNIKRIRLERGLAQERLALEAGVDRTLVSKIERVVANPSLEVLVKLATALQVSIQALLSEES
>NZ_LT606947.1|WP_114692523.1|1318386_1319199_-|FAA-hydrolase-family-protein
MSNQENDILSRRNAIKLGVASLSSVGMVAGVQAHKSDDSIKTPFVVAQTLIPIAGSDAEFPVRRIYCIGRNYAAHAREMGSDPTREPPFFFQKPTDAIQFVAPNKLVDHPYPSLTKNYHYEIELVAALNKDGKNIPVEKALEHVFGYALGLDMTRRDLQRFMGDQKKPWEIGKSFDHSAPIGPIFRVSQVGHFTKGTISLSVNGVVKQKANLDQMIWSVAEQIAKLSEANELFPGDIIYSGTPENVRPVVRGDVIRCSIDNLPDLSIKII
>NZ_LT606947.1|WP_114691938.1|1319298_1319709_-|hypothetical-protein
MMHLYRLLVLVILCALASPTAFAKWDEERDVTTNGKDELVYYFKTNEQGQKLVLDKYVKRLIFIQPDRLYKRTIRIIKVDGQSIEVMSDPFSRFPEQTAIIFENKDEVLKKLFLAKKIEVFVRYNRDEAVSVFQIK
>NZ_LT606947.1|WP_114691939.1|1323924_1324554_-|trimeric-intracellular-cation-channel-family-protein
MDQINFWIGIIATIAFAITGVLAIADRGVDLFGVLVLGVITAIGGGTVRDIILDVPAFWSIAQIYIWVALGACMVTFIAESFFTQPQIYRWMLYIDGLGAALFGIQGADKAWNLGFGLPVAPVILGVITAIGGGLLRDILAGRKTLLMSHELYAIPVTLGCCIYILILNFFPEFTLEGSVICMLAIFGLRAAAICWDLRVPKLFITKTR
>NZ_LT606947.1|WP_114691940.1|1324635_1325310_+|maleylacetoacetate-isomerase
MKTQLYSFWRSSAAFRVRIALNLKGLDYEVIPVHLLKSGGEQSSLDYAKKNPNRLVPLYSNGTHTIHQSLAIIEYLEEIQASSPLLPQAAIDRAWVRAVAMDIAIDIHPINNLRVLRYLIKNLGVSADAKEAWGQHWMSLGLASLEKQLGSDSRVGRFAYGDQPGLIDICLVPQIFNALSAKMTMEAYPTVMKIFNECMKLPAFIEASWEKQIDAEGSNSSTAP
>NZ_LT606947.1|WP_114691941.1|1325286_1325574_-|hypothetical-protein
MQREKSPPQQAWSISFAKLIIQSLVAWLIAGPILDLPILWVNAVVILAALPTGTGPFMLAQYYNTDGRIISRVVLLTTIGSLLTLSLFLWSSRGV
>NZ_LT606947.1|WP_114691942.1|1325530_1325893_-|hypothetical-protein
MGIPFCVLALDQDGLTSAIISTFIVFVMFAIATILIEVGIQSHKKSHEIVWNILKSLCTNLLLVAPVAGLLWSSMNLVLYDPLAQVISFLAAAATPCALVSIGLFFDAKRKVTTSTGVEY
>NZ_LT606947.1|WP_114691943.1|1325962_1326217_-|hypothetical-protein
MFYVFNVVFPVFALILIGYICGRTGKLGESASIELNRFVVWLALPAQLFQFASSSSWQTLWQPSFIAAFFLSCLLIFILVLMVS
>NZ_LT606947.1|WP_114691944.1|1326237_1326762_-|gamma-carbonic-anhydrase-family-protein
MAIFELDGNAPRLDEGAWVAESTEVIGSVELHKDASVWPKVVIRGDNDLIKIGEGSNVQDASILHADPGYPLIIGKNVTVGHQVMLHGCHVGDGSLIGIGAVILNGAKIGKNCLVGAGALVTEGKEFPDGSMILGSPAKAVKTLTPEQIAGIEDIASRYVKNAQRYQKTLKKIA
>NZ_LT606947.1|WP_114691945.1|1328136_1328499_+|hypothetical-protein
MKKFLVLLAALGAFSGLVQAQEKVQVLSTQELVNVCKFPSSPESRSFCLGYTTAIYDTYLATRHPQRAKPYICVKQPAPSRDEVIAEFVKFGQSNQQTADKPAAGVFLGFLAARFPCARK
>NZ_LT606947.1|WP_114691946.1|1328549_1328837_+|hypothetical-protein
MKKIIAITAATLAIAGCSNMSNTEQRTLSGADIGAAAGAVGTAIFHGNPIWGAVGGAAVGATSGYVYDAYKKEQASEYNSGYNAGKNNQPAKAPQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1059884 : 1123928

Acidithiobacillus_phage(12.0%)

portal,terminase,head,protease,tail,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114691737.1\|1059884_1060343_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	4.9e-53	68.3
WP_114691738.1\|1060955_1062227_+	DNA methylase N-4	K4HZA5	Acidithiobacillus_phage	5.6e-155	64.5
WP_114691739.1\|1062314_1062518_+	hypothetical protein	NA	NA	NA	NA
WP_114691740.1\|1062539_1062899_-	hypothetical protein	NA	NA	NA	NA
WP_114691741.1\|1062907_1063417_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	1.2e-23	59.4
WP_114692504.1\|1063429_1063621_-	hypothetical protein	NA	NA	NA	NA
WP_114691742.1\|1063742_1064108_+	HNH endonuclease	A0A2I7SC46	Paenibacillus_phage	1.5e-12	39.5
WP_114691743.1\|1064354_1064684_+	hypothetical protein	NA	NA	NA	NA
WP_114692505.1\|1064689_1066402_+\|terminase	terminase large subunit	A0A141GEV8	Brucella_phage	7.8e-152	51.1
WP_114691744.1\|1066406_1067918_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	4.0e-83	45.8
WP_114691745.1\|1067914_1068850_+	S49 family peptidase	G0YPK2	Erwinia_phage	1.4e-33	39.0
WP_114691746.1\|1068983_1070303_+\|capsid	phage major capsid protein	A0A1B1IQC5	uncultured_Mediterranean_phage	4.9e-37	30.2
WP_114691747.1\|1070329_1070776_+	hypothetical protein	NA	NA	NA	NA
WP_114691748.1\|1070776_1071400_+	hypothetical protein	NA	NA	NA	NA
WP_114691749.1\|1071396_1071747_+\|head,tail	head-tail adaptor protein	A0A1J0GUY4	Halomonas_phage	1.9e-12	41.1
WP_114691750.1\|1071736_1072228_+	hypothetical protein	Q8W6U1	Burkholderia_virus	9.7e-15	37.2
WP_114691751.1\|1072230_1072566_+	DUF3168 domain-containing protein	A0A0R6PHN5	Moraxella_phage	1.2e-05	29.6
WP_114691752.1\|1073421_1073682_+	DUF4035 domain-containing protein	A0A2P1N079	Streptomyces_phage	3.6e-08	42.5
WP_114691753.1\|1073728_1074655_+	hypothetical protein	A0A2I5ARC1	Synechococcus_phage	2.4e-06	32.7
WP_114691754.1\|1074651_1074900_+	hypothetical protein	NA	NA	NA	NA
WP_114691755.1\|1074896_1076204_+	hypothetical protein	A0A2H4P708	Pseudomonas_phage	2.5e-17	34.2
WP_081504913.1\|1076204_1076543_+	hypothetical protein	K7XZ92	uncultured_Mediterranean_phage	2.5e-22	48.7
WP_114691756.1\|1076539_1077244_+\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	9.2e-59	49.6
WP_114691757.1\|1077243_1077960_+	peptidase P60	D6PG99	uncultured_phage	1.1e-70	52.7
WP_114691758.1\|1078525_1080967_+	host specificity protein J	A0A2R3UA88	Siphoviridae_environmental_samples	6.2e-179	41.9
WP_114691759.1\|1080976_1081489_+	hypothetical protein	A0A0B5A5I4	Achromobacter_phage	1.7e-38	47.9
WP_114691760.1\|1081516_1082029_+	hypothetical protein	NA	NA	NA	NA
WP_114691761.1\|1082097_1082556_+	hypothetical protein	NA	NA	NA	NA
WP_114691762.1\|1082796_1083915_+	hypothetical protein	NA	NA	NA	NA
WP_114691763.1\|1084047_1084857_+	hypothetical protein	I6S6K3	Celeribacter_phage	6.7e-05	48.3
WP_114691764.1\|1084858_1085296_+	hypothetical protein	NA	NA	NA	NA
WP_114691765.1\|1085475_1086237_+	hypothetical protein	NA	NA	NA	NA
WP_114691766.1\|1086236_1086719_+	hypothetical protein	A0A0X8WPP5	Ralstonia_phage	1.2e-17	41.4
WP_114691767.1\|1086768_1087020_+	hypothetical protein	A0A0B5A4P9	Achromobacter_phage	3.4e-16	55.3
WP_114691768.1\|1087061_1087592_+	hypothetical protein	A0A0X8WPP5	Ralstonia_phage	7.2e-40	51.6
WP_114691769.1\|1088436_1088922_+	lysozyme	K4I410	Acidithiobacillus_phage	4.7e-62	77.2
WP_114691770.1\|1094180_1095326_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_114691771.1\|1097468_1097981_-	hypothetical protein	NA	NA	NA	NA
WP_114691772.1\|1097980_1098586_-	hypothetical protein	NA	NA	NA	NA
WP_114691773.1\|1102856_1103846_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_114691774.1\|1105037_1105460_+	glyoxalase	NA	NA	NA	NA
WP_114691775.1\|1105480_1106671_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_114691776.1\|1108324_1109101_+	sulfurtransferase	NA	NA	NA	NA
WP_114691777.1\|1110122_1111097_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_114691778.1\|1111096_1111852_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_114691779.1\|1111975_1112950_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_114691780.1\|1112962_1113325_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_114691781.1\|1113305_1113758_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_114691782.1\|1113792_1114095_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_114691783.1\|1117633_1118173_+	chromate transporter	NA	NA	NA	NA
WP_114691784.1\|1120199_1120637_-	tripartite tricarboxylate transporter TctB family protein	NA	NA	NA	NA
WP_114691785.1\|1120661_1121642_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
WP_114691786.1\|1121727_1122105_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.8e-24	58.7
WP_114691787.1\|1122113_1122893_-	4,5-DOPA dioxygenase extradiol	NA	NA	NA	NA
WP_114691788.1\|1123265_1123928_+\|protease	site-2 protease family protein	NA	NA	NA	NA

DBSCAN-SWA_2

1208642 : 1220200

Tupanvirus(12.5%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114692515.1\|1208642_1211504_+\|tRNA	isoleucine--tRNA ligase	A0A2K9L260	Tupanvirus	2.4e-81	26.7
WP_114691852.1\|1211533_1212028_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_114691853.1\|1212037_1213249_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	5.5e-35	30.8
WP_114691854.1\|1213299_1213749_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	8.2e-45	58.8
WP_114691855.1\|1213811_1216118_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.2e-165	42.4
WP_114691856.1\|1216114_1216471_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.1e-12	41.6
WP_011903586.1\|1216747_1216951_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	74.2
WP_114691857.1\|1217072_1217528_+	DUF192 domain-containing protein	A0A222YVT9	Synechococcus_phage	3.2e-12	41.7
WP_114691858.1\|1217621_1217927_-	pyrimidine/purine nucleoside phosphorylase	NA	NA	NA	NA
WP_114691859.1\|1217968_1219198_-	argininosuccinate synthase	NA	NA	NA	NA
WP_114691860.1\|1219252_1220200_-	ornithine carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	3.3e-19	24.8

DBSCAN-SWA_3

1404788 : 1413375

Tupanvirus(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_114692528.1\|1404788_1405745_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	5.7e-35	33.7
WP_114692007.1\|1405881_1406520_+	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_114692008.1\|1406610_1407207_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_114692009.1\|1407239_1407506_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	6.0e-19	55.8
WP_114692010.1\|1407522_1408017_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.4e-29	43.5
WP_114692011.1\|1408053_1408674_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_114692012.1\|1408666_1410013_-	insulinase family protein	G3MBJ8	Bacillus_virus	2.8e-11	24.0
WP_114692013.1\|1409999_1411385_-	insulinase family protein	A0A2K9LA15	Tupanvirus	3.5e-25	24.1
WP_114692014.1\|1411447_1412338_+	signal recognition particle-docking protein FtsY	D6PHS7	uncultured_phage	1.8e-14	35.9
WP_114692015.1\|1412433_1413375_+	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	3.2e-38	36.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT606947

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection