CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT615218	Staphylococcus aureus strain AUS0325 chromosome 1	3 crisprs	cas3,DEDDh,DinG,csa3,WYL	2	2	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT615218_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT615218_1

248627-248760

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LT615218_1

>merge|NZ_LT615218|1|248627-248760|CRISPRCasFinder
GTTATAATGGCGGGCCCCCAACACAAAGAATTTCGAAAAGAAATTCTACAGGTAATGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACA

>NZ_LT615218|1|1|248627-248760|CRISPRCasFinder
GTTATAATGGCGGGCCCCCAACA	CAAAGAATTTCGAAAAGAAATTCTACAGGTAA
TGCAAGTTGGCGGGGCCCCAACA	TAGAAGCTGGCGGAAAGTCAGCATACAATAATG
TGCAAGTTGGCGGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT615218.1\|WP_001789470.1\|249830_249965_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_000736795.1\|257363_258314_+\|glycine-glycine-endopeptidase-LytM	unknown	unknown	gnl\|CDD\|366703
NZ_LT615218.1\|WP_000922332.1\|245464_246169_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225099
NZ_LT615218.1\|WP_000163990.1\|247124_248561_+\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|181973
NZ_LT615218.1\|WP_000031268.1\|249050_249812_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_LT615218.1\|WP_000747873.1\|251004_251409_-\|D-ribose-pyranase	unknown	unknown	gnl\|CDD\|183318
NZ_LT615218.1\|WP_000607067.1\|244655_245357_+\|antiholin-like-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
NZ_LT615218.1\|WP_000645452.1\|243366_244107_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|184495
NZ_LT615218.1\|WP_001066561.1\|254435_255812_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LT615218.1\|WP_000240920.1\|237104_238793_+\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_LT615218.1\|WP_000608822.1\|240690_241365_+\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	unknown	unknown	gnl\|CDD\|183940
NZ_LT615218.1\|WP_000182746.1\|250062_250977_-\|ribokinase	unknown	unknown	gnl\|CDD\|274000
NZ_LT615218.1\|WP_001792906.1\|244219_244663_+\|antiholin-like-murein-hydrolase-modulator-LrgA	unknown	unknown	gnl\|CDD\|235222
NZ_LT615218.1\|WP_000757871.1\|252536_253535_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_LT615218.1\|WP_000029201.1\|251423_252305_-\|ribose-transporter-RbsU	unknown	unknown	gnl\|CDD\|284268
NZ_LT615218.1\|WP_069991842.1\|241609_243364_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_LT615218.1\|WP_000066935.1\|246317_247109_+\|PTS-glucose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|225101
NZ_LT615218.1\|WP_000975363.1\|238825_240547_+\|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|376098
NZ_LT615218.1\|WP_031865152.1\|256045_257038_+\|linear-amide-C-N-hydrolase	unknown	unknown	gnl\|CDD\|225591
NZ_LT615218.1\|WP_001159764.1\|253915_254308_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT615218.1\|WP_000736795.1\|257363_258314_+\|glycine-glycine-endopeptidase-LytM	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	6.32575e-32
NZ_LT615218.1\|WP_000922332.1\|245464_246169_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	1.3822e-62
NZ_LT615218.1\|WP_000163990.1\|247124_248561_+\|6-phospho-beta-glucosidase	gnl\|CDD\|181973	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed.	0
NZ_LT615218.1\|WP_000031268.1\|249050_249812_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	9.29989e-28
NZ_LT615218.1\|WP_000747873.1\|251004_251409_-\|D-ribose-pyranase	gnl\|CDD\|183318	PRK11797, PRK11797, D-ribose pyranase; Provisional.	1.143e-69
NZ_LT615218.1\|WP_000607067.1\|244655_245357_+\|antiholin-like-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
NZ_LT615218.1\|WP_000645452.1\|243366_244107_+\|DNA-binding-response-regulator	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	2.42934e-152
NZ_LT615218.1\|WP_001066561.1\|254435_255812_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.4002e-30
NZ_LT615218.1\|WP_000240920.1\|237104_238793_+\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.42901e-119
NZ_LT615218.1\|WP_000608822.1\|240690_241365_+\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	2.67087e-152
NZ_LT615218.1\|WP_000182746.1\|250062_250977_-\|ribokinase	gnl\|CDD\|274000	TIGR02152, Putative_ribokinase, ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not. [Energy metabolism, Sugars].	4.5038e-143
NZ_LT615218.1\|WP_001792906.1\|244219_244663_+\|antiholin-like-murein-hydrolase-modulator-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	8.44339e-64
NZ_LT615218.1\|WP_000757871.1\|252536_253535_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.55591e-100
NZ_LT615218.1\|WP_000029201.1\|251423_252305_-\|ribose-transporter-RbsU	gnl\|CDD\|284268	pfam06800, Sugar_transport, Sugar transport protein. This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins, ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes. These members are transmembrane proteins which are usually 5+5 duplications. This model recognizes a set of five TMs,.	3.83243e-117
NZ_LT615218.1\|WP_069991842.1\|241609_243364_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
NZ_LT615218.1\|WP_000066935.1\|246317_247109_+\|PTS-glucose-transporter-subunit-IIA	gnl\|CDD\|225101	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism].	1.52649e-54
NZ_LT615218.1\|WP_000975363.1\|238825_240547_+\|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	7.70241e-35
NZ_LT615218.1\|WP_031865152.1\|256045_257038_+\|linear-amide-C-N-hydrolase	gnl\|CDD\|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	1.60157e-150

>NZ_LT615218.1|WP_000163990.1|247124_248561_+|6-phospho-beta-glucosidase
MTKLPQNFMWGGALAANQFEGGYDKGGKGLSVIDVMTSGAHGKARQITESIDPNHYYPNHEGIDFYHRYKEDIALFKEMGLKCLRTSIAWTRIFPNGDEDVPNEEGLAFYDRIFDELIAQGIEPVVTLSHFEMPLHLAKHYGGFRNREVVDYFVHFARVVFERYKDKVTYWMTFNEINNQMDTSNPIFLWTNSGVALTENDNPEEVLYQVAHHELLASALAVRLGKEINPKFKIGTMISHVPIYPYSCHPKDMMEAQIANRLRFFFPDVQVRGYYPSYAKKMLARKGYDVGWQEGDDSILQQGTVDYIGFSYYMSTAVKHDVDTTVKNNIVNGGLNHSVENPHIATSDWGWAIDPDGLRYTLNVLYDRYQLPLFIVENGFGAVDEVVDGHIHDDYRIEYLKAHITAAIEAVDQDGVDLIGYTPWGIIDIVSFTTGEMKKRYGLIYVDRDNDGHGTMERLKKDSFYWYQQVIASNGDKL
>NZ_LT615218.1|WP_000066935.1|246317_247109_+|PTS-glucose-transporter-subunit-IIA
MSNKYKEQAQDILTAVGGVENIVDATYDTKCITIHMQHTIPSTANEVKQIVDVTSVAENDAQLVIKLNGNVDEVYQQLQRLIKNANVEESENTDNINSQDTSYTPQVKVTTPILVKAPIAGRRILLKEVRDSIFREKMVGEGLAIKAHEESKVIAPVNGLISMIVPTKHAVGIQSEDGVDIVIHIGVNTVDLEGKGFKCFVKQNDRVEAGQTLLQFDQQYIQQQGYNADVIVVISNSADLGKVELTMNEIITTEDVIFKIFKN
>NZ_LT615218.1|WP_000922332.1|245464_246169_-|GntR-family-transcriptional-regulator
MLKYEHIAKQLNAFIHQSNFKPGDKLPSVTQLKERYQVSKSTIIKALGLLEQDGLIYQAQGSGIYVRNIADANRINVFKTNGFSKSLGEHRMTSKVLVFKEMATPPKSVQDELQLNADDTVYYLERLRFVDDDVLCIEYSYYHKEIVKYLNDDIAKGSIFDYLESNMKLRIGFSDIFFNVDKLTSSEASLLQLSTGEPCLRYHQTFYTMTGKPFDSSDIVFHYRHAQFYIPSKK
>NZ_LT615218.1|WP_000607067.1|244655_245357_+|antiholin-like-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>NZ_LT615218.1|WP_001792906.1|244219_244663_+|antiholin-like-murein-hydrolase-modulator-LrgA
MVVKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>NZ_LT615218.1|WP_000645452.1|243366_244107_+|DNA-binding-response-regulator
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNNASAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>NZ_LT615218.1|WP_069991842.1|241609_243364_+|sensor-histidine-kinase
MLSLTMLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGLANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFSIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>NZ_LT615218.1|WP_000608822.1|240690_241365_+|iron-sulfur-cluster-repair-di-iron-protein-ScdA
MINKNDIVADIVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKSGMLEHMQKEDDVDFPKLIKYEQGEVVNDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>NZ_LT615218.1|WP_000975363.1|238825_240547_+|poly(ribitol-phosphate)-beta-N-acetylglucosaminyltransferase
MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTTLLKDNDIYFPEELKSAEDQLFTIKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISMKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIVGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>NZ_LT615218.1|WP_000240920.1|237104_238793_+|CDP-glycerol-glycerophosphotransferase-family-protein
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>NZ_LT615218.1|WP_000031268.1|249050_249812_-|class-I-SAM-dependent-methyltransferase
MSKEAGHTFLAKLGKTRLRPGGKEATDWLIQQGAFSQDKQVLEVACNMCTTSIYLAHTYGCHIQGVDINKKALEKAQENISAAGLESYIQVQQANAVKLPFDDNQFDIVLNEAMLTMLPIAIKEKALREYYRVLKPGGILLTHDIVIVNESHATHVVKSLSAAINVNVSPQTKLGWLDLYNQAGFNHVHYHTGPMSLMTPKGLIYDEGIVGTIKIINNALKKENRPMFCKMFKTMTKLRKDMNYITFVAKKEH
>NZ_LT615218.1|WP_001789470.1|249830_249965_+|hypothetical-protein
MIIIIINIAYLYAIIWKLKRLQKIVTSFITKHESSSIGLVENYF
>NZ_LT615218.1|WP_000182746.1|250062_250977_-|ribokinase
MTNKVVILGSTNVDQFLTVERYAQPGETLHVEEAQKAFGGGKGANQAIATARMQADTTFITKIGTDGVADFILEDFKAAHIDTSYIIKTTEAKTGQAFITVNAEGQNTIYVYGGANMTMTPEDVINAKDAIINADFVVAQLEVPIPAIISAFEIAKAHGVTTVLNPAPAKALPNELLSLIDIIVPNETEAELLSGIKVTNEQSMKDNANYFLSLGIKTVLITLGKQGTYFATKNQSQHIEAYKVNAIDTTAAGDTFIGAFVSRLNKSQDNLADAIDFGNKASSLTVQKHGAQASIPLLEEVNQV
>NZ_LT615218.1|WP_000747873.1|251004_251409_-|D-ribose-pyranase
MKKSAVLNEHISKAIATIGHFDLLTINDAGMPIPNDHRRIDLAVTKNLPRFIDVLATVLEEMEIQKIYLAEEIKEHNPTQLQQIKQLISSEIEIIFIPHEEMKSNLAHPLNKGNIRTGETTPYSNIALESNVTF
>NZ_LT615218.1|WP_000029201.1|251423_252305_-|ribose-transporter-RbsU
MSIVALLIGLGPLIGWGFFPTVASKFGGKPVHQIIGATVGTLIFAIILAVVTSSGFPTGTNLLFALLSGAGWGFGQIITFKAFELVGSSRAMPVTTAFQLLGASLWGVFALGNWPGIGHKIIGFTALVVILIGARMTVWSERKEASNAKNLRRAVVLLLIGEFGYWLYSAAPQATSIDGLTAFLPQAMGMVIVAVIYGFMNMEAENPFRNKITWLQIISGFFFAFGALTYLISAQPNMNGLATGFILSQTSVVLATLTGIYFLKQHKTSKEMVITIIGLVLILVAASVTVFIK
>NZ_LT615218.1|WP_000757871.1|252536_253535_-|LacI-family-DNA-binding-transcriptional-regulator
MKKVSIKDVAREAGVSVTTVSHILNHHDSRFSATTIKNVHAVSERLGYAPNKHAKQLRGSKIQTIGVILPSLTNPFFSALMQSIHDHKPSDVDLCFLTSTATDLYDNIKHLIDRGIDGLIIAQYISSPDALNNYLKKHHVPYVVLDQNDHQGYTDFVRTNEYQGGQLAAQHLIELGHNNMMIVAPYDMMANMSTRVAGFVDTLRANQLPEPQIVHTELSKRGGLTIVDDIMVQSATAIFAINDELAIGILRGLIEHGISIPKDISLIGYDDIDYAAYVSPPLTTVAQPITDIGKTSLTLLLQRLQHLDKSIDMIELPTTLKIRATTGYHLSN
>NZ_LT615218.1|WP_001159764.1|253915_254308_+|hypothetical-protein
MQFKLKEEEIISFLELKYPEKEFEYGRLLVGQHKRDDLDVYYFGDTFLMCTIISFKTFEIKETVELSYDAVNRIVLKDGWLFRKMRIETMQKVLKYGTSKLMLTDFQKDNYNKYIQGQKQRVIFENGHFV
>NZ_LT615218.1|WP_001066561.1|254435_255812_-|MFS-transporter
MNNTQSSPRSNIIIAIMLSALTYWLFAQSFINIGPLVGQTYQTSPAVLNLSISLTSFATGIFMVAAGDIADKIGQLRMTYMGLIISMVASLLLIISDITALLIIGRILQGLSAAILLPSTVGVLNNQFKGEHLRRAISYLMISTVGGIGLAGVIGGLIATNFGWQTNFIISIVIAFIAILLLKGTPEKVSQHSHRHPFDYKGMSIFAVMIGSFTLLLTQGFEQGWFSTFSFICLSIFIITTLIFIIIERRHEVPFIDFSVLRNRPFIGAFLNNFVLNSGLGVTVVFFIFAQTHLGLSAAQSGLVTLPYAIVAVAMIRLGEKATLRFGGKLMLIIGPLFPVIGITIISMTSLQPSQYIIAVVIGFVICAIGNGLVATPGLTIAIFSMPNEKVGLATGLYKMSGTLGGAFGIALSTTVFSMLQLNYAPSVAATVTFIVSIVLMILGSLSAYMIIPKTVKS
>NZ_LT615218.1|WP_031865152.1|256045_257038_+|linear-amide-C-N-hydrolase
MCTGFTIQTLNNQVLLGRTMDYDYPLDGSPAVTPRNYRWTSRTGTTGRTQYGFIGTGTDMEGFIYGDGVNEHGVAISTQYFRGYSSYGSTHKADAMNITQNEIVTWILGYTTSIEDMKQQASQIHVVAVYLNDIGEVPPLHYHVSDATGHSVEVSFKEGEVVIKDNPIGVLTNHPDLDWHYSNLRQYINISPYPATAKLLEGVTIEPLGNEAGTFGLPGGFTSTERFVRMAFMKANIAQNNDKEMDLMNTFYLLDAVNIPIGIVRPHDADNHYTMYQTVINLTTRTLYIKYYGSNELVALKLTDDLINRKDMTIFKPEKHITIRKLNDNQ
>NZ_LT615218.1|WP_000736795.1|257363_258314_+|glycine-glycine-endopeptidase-LytM
MKKLTAAAIATMGFATFTMAHQADAAETTNTQQAHTQMSTQSQDVSYGTYYTIDSNGDYHHTPDGNWNQAMFDNKEYSYTFVDAQGHTHYFYNCYPKNANANGSGQTYVNPATAGDNNDYTASQSQQHINQYGYQSNVGPDASYYSHSNNNQAYNSHDGNGKVNSPNGTSNQNGGSASKATASGHAKDASWLTSRKQLQPYGQYHGGGAHYGVDYAMPENSPVYSLTDGTVVQAGWSNYGGGNQVTIKEANSNNYQWYMHNNRLTVSAGDKVKAGDQIAYSGSTGNSTAPHVHFQRMSGGIGNQYAVDPTSYLQSR

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Crispr_ID: NZ_LT615218_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT615218_2

2163931-2164011

Orphan

Consensus_repeat	Method
CAACTTTAGTTGTTAGGGGCTCTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_LT615218_2

>merge|NZ_LT615218|2|2163931-2164011|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTCAACTTTAGTTGTTAGGGGCTTCT

>NZ_LT615218|2|2|2163931-2164011|CRISPRCasFinder
CAACTTTAGTTGTTAGGGGCTCTT	ATGCATGCGCTTAGCGCAGGCGCTCCTACTTTT
CAACTTTAGTTGTTAGGGGCTTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT615218.1\|WP_000019733.1\|2161579_2162557_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_LT615218.1\|WP_000334463.1\|2167885_2169691_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LT615218.1\|WP_000927339.1\|2171944_2174077_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_LT615218.1\|WP_001292149.1\|2174088_2174523_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_LT615218.1\|WP_001123303.1\|2155890_2156304_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_LT615218.1\|WP_000648723.1\|2174522_2175629_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_LT615218.1\|WP_001127960.1\|2159066_2160005_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_LT615218.1\|WP_000070866.1\|2155247_2155691_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_LT615218.1\|WP_001802298.1\|2164346_2164451_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_000003759.1\|2161257_2161578_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_LT615218.1\|WP_000160304.1\|2154416_2155127_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_LT615218.1\|WP_000495669.1\|2162822_2163914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_000370925.1\|2165946_2166804_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_LT615218.1\|WP_000908185.1\|2166871_2167654_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_LT615218.1\|WP_000808817.1\|2158805_2159036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_001024089.1\|2160440_2161106_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_LT615218.1\|WP_001792784.1\|2165130_2165289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_000083807.1\|2170371_2171910_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_LT615218.1\|WP_069992021.1\|2175947_2183432_-\|DUF1542-domain-containing-protein	unknown	unknown	gnl\|CDD\|275089
NZ_LT615218.1\|WP_000123395.1\|2156760_2158134_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640

Protein	Function_ID	Function_description	E-value
NZ_LT615218.1\|WP_000019733.1\|2161579_2162557_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	3.72171e-107
NZ_LT615218.1\|WP_000334463.1\|2167885_2169691_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LT615218.1\|WP_001292149.1\|2174088_2174523_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_LT615218.1\|WP_001123303.1\|2155890_2156304_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46
NZ_LT615218.1\|WP_000648723.1\|2174522_2175629_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_LT615218.1\|WP_001127960.1\|2159066_2160005_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_LT615218.1\|WP_000070866.1\|2155247_2155691_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NZ_LT615218.1\|WP_000003759.1\|2161257_2161578_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_LT615218.1\|WP_000160304.1\|2154416_2155127_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_LT615218.1\|WP_000927339.1\|2171944_2174077_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.64455e-68
NZ_LT615218.1\|WP_000370925.1\|2165946_2166804_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
NZ_LT615218.1\|WP_000908185.1\|2166871_2167654_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.77819e-104
NZ_LT615218.1\|WP_001024089.1\|2160440_2161106_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.90227e-47
NZ_LT615218.1\|WP_000083807.1\|2170371_2171910_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_LT615218.1\|WP_069992021.1\|2175947_2183432_-\|DUF1542-domain-containing-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	4.76657e-109
NZ_LT615218.1\|WP_000123395.1\|2156760_2158134_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	4.13984e-06

>NZ_LT615218.1|WP_000495669.1|2162822_2163914_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_LT615218.1|WP_000019733.1|2161579_2162557_+|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFIPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>NZ_LT615218.1|WP_000003759.1|2161257_2161578_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_LT615218.1|WP_001024089.1|2160440_2161106_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIDTLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGEQDIKDALTQFEIEKD
>NZ_LT615218.1|WP_001127960.1|2159066_2160005_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_LT615218.1|WP_000808817.1|2158805_2159036_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_LT615218.1|WP_000123395.1|2156760_2158134_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFIAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMFESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_LT615218.1|WP_001123303.1|2155890_2156304_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_LT615218.1|WP_000070866.1|2155247_2155691_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_LT615218.1|WP_000160304.1|2154416_2155127_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NZ_LT615218.1|WP_001802298.1|2164346_2164451_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_LT615218.1|WP_001792784.1|2165130_2165289_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_LT615218.1|WP_000370925.1|2165946_2166804_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_LT615218.1|WP_000908185.1|2166871_2167654_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINEGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKTPGKLGYSADNVRKQIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_LT615218.1|WP_000334463.1|2167885_2169691_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_LT615218.1|WP_000083807.1|2170371_2171910_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_LT615218.1|WP_000927339.1|2171944_2174077_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_LT615218.1|WP_001292149.1|2174088_2174523_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_LT615218.1|WP_000648723.1|2174522_2175629_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_LT615218.1|WP_069992021.1|2175947_2183432_-|DUF1542-domain-containing-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPTAQPAAPANQGQPAVQPANQGGQANPAGGAAQPNTQPAGQGNQADPNNAAQAQPGNQATPANQAGQGNNQATPNNNATPANQTQPVNAPAAAQPAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQAKGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEYTINTEIGNNGNFGASLKSDQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADTILNEDANHVETANRASQTDIDGLVTKLQAALIDNQAAIAELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTAPATTAKAAALEEFDEVVQAQIDQAPLNPDTTNEEVAEAIERINAAKVSGVKAIEATTTAQDLERVKNEEISKIENITDSTQTKMDAYNEVKQAVTARKAQNATVSNATNEEVAEADAAVDAAQKQGLHDIQVVKSKQEVADTKSKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKEAAYTELDAKKQEARTNLDAANTNSDVTTAKDNGIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANADIDNAAANADVDNAKTTNEATIAAITPDSNVKPAAKQAIADKVQAQETAIDANNGSTTEEKEAAKQQVQTEKTAADAAIDAAHSNAEVEAAKNAEIAKIEAIQPATTTKDNAKEAIATKANERKTAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITTILNNKLQEIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEAAINAVTPKVVKKQAAKDEIDQLQAAQTAVINNDQNATNEEKEAAIQQLATAVTDAKNNITAAADNNGVDTAKDAGKNSIQSTQPATAVKSNAKNDVDQAVTTQNQAIDNTTGATTEEKNAAKDLVSKAKEKAYQDILNAQTTNDVTQIKDQAVADIQGITADTTIKDVAKGELAAKANEQKALIAQTVDATTEEKDQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLNEMQNKITEILNDNTTTNEEKGKDIGPVRAAYEEGLNNINAATTTGDVTTAKDTAVQKVQQLHANPVKKPAGKTALDQAAADRKTQIEQTPNASQQEINDAKQEVDAALNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIADTYNAKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKETATTDLYAYADQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEVKAEDTKESIDQSDQLTAEEKTEALAMIKQITDQAKQGITDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADADASAKEIARTDLGRYFDRFADKLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGIDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSATDDANDKPQANNNSSVDASTNSPTMDNDVTSKPEVESTNNGTTDKPVTETDNATPAESTTNNNSTTTATNENAPTGSTATAPTTASTEPASSADSKDNASVNDSKQNAEVNNSAESQSTNGKVAQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPNVPSNTSKDKEESTTNQTDAGQLKSETNVASNEADKSPSKADTEVSNKPSTSASSEAKDKMTSTNVSQKDDTATADTNDTQTSVGPVANNKAKDMQTNDTQKSVGSVANNKATQNDGANASPATVSNGSNSANQDMLNVTKPEENKANAKSDQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE

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Crispr_ID: NZ_LT615218_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT615218_3

2176252-2176337

Orphan

Consensus_repeat	Method
CCAACTGATTTTTGCGTATCATTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT615218_3

>merge|NZ_LT615218|3|2176252-2176337|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGTTTGCATATCTTTAGCTTTATTGTTTGCAACTGGGCCAACTGATGTTTGCGTATCATTAGT

>NZ_LT615218|3|3|2176252-2176337|CRISPRCasFinder
CCAACTGATTTTTGCGTATCATTAGT	TTGCATATCTTTAGCTTTATTGTTTGCAACTGGG
CCAACTGATGTTTGCGTATCATTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT615218.1\|WP_001802298.1\|2164346_2164451_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_000334463.1\|2167885_2169691_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_LT615218.1\|WP_001237506.1\|2197606_2198950_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_LT615218.1\|WP_000927339.1\|2171944_2174077_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_LT615218.1\|WP_000894032.1\|2185089_2186022_-\|YbbR-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|227193
NZ_LT615218.1\|WP_000167867.1\|2187021_2187930_-\|arginase	unknown	unknown	gnl\|CDD\|212515
NZ_LT615218.1\|WP_000648723.1\|2174522_2175629_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_LT615218.1\|WP_000958531.1\|2194058_2195123_-\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_LT615218.1\|WP_001292149.1\|2174088_2174523_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_LT615218.1\|WP_000370925.1\|2165946_2166804_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_LT615218.1\|WP_000636857.1\|2197034_2197508_-\|multidrug-efflux-transporter-SepA	unknown	unknown	gnl\|CDD\|374975
NZ_LT615218.1\|WP_000083807.1\|2170371_2171910_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_LT615218.1\|WP_000521495.1\|2183707_2185063_-\|phosphoglucosamine-mutase	unknown	unknown	gnl\|CDD\|237670
NZ_LT615218.1\|WP_001140999.1\|2195270_2196713_-\|multidrug-efflux-MFS-transporter-LmrS	unknown	unknown	gnl\|CDD\|129794
NZ_LT615218.1\|WP_001792784.1\|2165130_2165289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_000908185.1\|2166871_2167654_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_LT615218.1\|WP_000047255.1\|2199126_2199810_-\|hemolysin-III-family-protein	unknown	unknown	gnl\|CDD\|224191
NZ_LT615218.1\|WP_000495669.1\|2162822_2163914_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_001790708.1\|2193784_2193970_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT615218.1\|WP_000347896.1\|2186023_2186833_-\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539

Protein	Function_ID	Function_description	E-value
NZ_LT615218.1\|WP_000334463.1\|2167885_2169691_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_LT615218.1\|WP_001237506.1\|2197606_2198950_-\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.92638e-43
NZ_LT615218.1\|WP_000927339.1\|2171944_2174077_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	9.64455e-68
NZ_LT615218.1\|WP_000047255.1\|2199126_2199810_-\|hemolysin-III-family-protein	gnl\|CDD\|224191	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only].	2.41003e-66
NZ_LT615218.1\|WP_000167867.1\|2187021_2187930_-\|arginase	gnl\|CDD\|212515	cd09989, Arginase, Arginase family. This family includes arginase, also known as arginase-like amidino hydrolase family, and related proteins. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid. In vertebrates, at least two isozymes have been identified: type I (ARG1) cytoplasmic or hepatic liver-type arginase and type II (ARG2) mitochondrial or non-hepatic arginase. Point mutations in human arginase ARG1 gene lead to hyperargininemia with consequent mental disorders, retarded development and early death. Hyperargininemia is associated with a several-fold increase in the activity of the mitochondrial arginase (ARG2), causing persistent ureagenesis in patients. ARG2 overexpression plays a critical role in the pathophysiology of cholesterol mediated endothelial dysfunction. Thus, arginase is a therapeutic target to treat asthma, erectile dysfunction, atherosclerosis and cancer.	9.8301e-146
NZ_LT615218.1\|WP_000648723.1\|2174522_2175629_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_LT615218.1\|WP_000958531.1\|2194058_2195123_-\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	6.43129e-115
NZ_LT615218.1\|WP_001292149.1\|2174088_2174523_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_LT615218.1\|WP_000370925.1\|2165946_2166804_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	6.8047e-59
NZ_LT615218.1\|WP_000636857.1\|2197034_2197508_-\|multidrug-efflux-transporter-SepA	gnl\|CDD\|374975	pfam17080, SepA, Multidrug Resistance efflux pump. SepA is a drug efflux protein that is involved in bacterial multidrug resistance. It is predicted to have four transmembrane domains.	3.20059e-30
NZ_LT615218.1\|WP_000083807.1\|2170371_2171910_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_LT615218.1\|WP_000521495.1\|2183707_2185063_-\|phosphoglucosamine-mutase	gnl\|CDD\|237670	PRK14316, glmM, phosphoglucosamine mutase; Provisional.	0
NZ_LT615218.1\|WP_001140999.1\|2195270_2196713_-\|multidrug-efflux-MFS-transporter-LmrS	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.50487e-81
NZ_LT615218.1\|WP_000908185.1\|2166871_2167654_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.77819e-104
NZ_LT615218.1\|WP_000894032.1\|2185089_2186022_-\|YbbR-like-domain-containing-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	6.26423e-118
NZ_LT615218.1\|WP_000347896.1\|2186023_2186833_-\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	2.13611e-103

>NZ_LT615218.1|WP_000648723.1|2174522_2175629_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS
>NZ_LT615218.1|WP_001292149.1|2174088_2174523_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_LT615218.1|WP_000927339.1|2171944_2174077_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGADSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_LT615218.1|WP_000083807.1|2170371_2171910_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_LT615218.1|WP_000334463.1|2167885_2169691_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEDGTPVVALATQENVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_LT615218.1|WP_000908185.1|2166871_2167654_-|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINEGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKTPGKLGYSADNVRKQIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEVRNEAHHLLKLVGISAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_LT615218.1|WP_000370925.1|2165946_2166804_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_LT615218.1|WP_001792784.1|2165130_2165289_+|hypothetical-protein
MSKSSDALFNSLTQSFELIEGVYNELVTDNLKIVMYKPRKESTSGRINRRFK
>NZ_LT615218.1|WP_001802298.1|2164346_2164451_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_LT615218.1|WP_000495669.1|2162822_2163914_+|hypothetical-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDKKVVTEPKNTKVENGKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_LT615218.1|WP_000521495.1|2183707_2185063_-|phosphoglucosamine-mutase
MGKYFGTDGVRGVANQELTPELAFKLGRYGGYVLAHNKGEKHPRVLVGRDTRVSGEMLESALIAGLISIGAEVMRLGIISTPGVAYLTRDMGAELGVMISASHNPVADNGIKFFGSDGFKLSDEQENEIEALLDQENPELPRPVGNDIVHYSDYFEGAQKYLSYLKSTVDVNFEGLKIVLDGANGSTSSLAPFLFGDLEADTETIGCSPDGYNINEKCGSTHPEKLAEKVVETESDFGLAFDGDGDRIIAVDENGQIVDGDQIMFIIGQEMHKNQELNNDMIVSTVMSNLGFYKALEQEGIKSNKTKVGDRYVVEEMRRGNYNLGGEQSGHIVMMDYNTTGDGLLTGIQLASVIKMTGKSLSELAGQMKKYPQSLINVRVTDKYRVEENVDVKEVMTKVEVEMNGEGRILVRPSGTEPLVRVMVEAATDEDAERFAQQIADVVQDKMGLDK
>NZ_LT615218.1|WP_000894032.1|2185089_2186022_-|YbbR-like-domain-containing-protein
MLESKWGLRFIAFLLALFFFLSVNNVFGNIFNTGNLGQKSSKTIQDVPVEILYNTKDLHLTKAPETVNVTISGPQSKIIKIENPEDLRVVIDLSNAKAGKYQEKYQVKGLADDIHYSVKPKLANITLENKVTKKMTVQPDVSQSDIDPLYKITKQEVSPQTVKVTGGEEQLNDIAYLKATFKTNKKINGDTKDVAEVTAFDKKLNKLNVSIQPNEVNLQVKVEPFSKKVKVNVKQKGSLADDKELSSIDLEDKEIEIFGSRDDLQNISEVDAEVDLDGISESTEKTVKINLPEHVTKAQPSETKAYINVK
>NZ_LT615218.1|WP_000347896.1|2186023_2186833_-|TIGR00159-family-protein
MDFSNFFQNLSTLKIVTSILDLLIVWYVLYLLITVFKGTKAIQLLKGILVIVIGQQISMILNLTATSKLFDIVIQWGVLALIVIFQPEIRRALEQLGRGSFLKRYTSNTYSKDEEKLIQSVSKAVQYMAKRRIGALIVFEKETGLQDYIETGIAMDSNISQELLINVFIPNTPLHDGAMIIQGTKIAAAASYLPLSDSPKISKSLGTRHRAAVGISEVSDAFTVIVSEETGDISVTFDGKLRRDISNEIFEELLAEHWFGTRFQKKGVK
>NZ_LT615218.1|WP_000167867.1|2187021_2187930_-|arginase
MTKTKAIDIIGAPSTFGQRKLGVDLGPTAIRYAGLISRLKQLDLDVYDKGDIKVPAVNIEKFHSEQKGLRNYDEIIDVNQKLNKEVSASIENNRFPLVLGGDHSIAVGSVSAISKHYNNLGVIWYDAHGDLNIPEESPSGNIHGMPLRILTGEGPKELLELNSNVIKPENIVLIGMRDLDKGERQFIKDHNIKTFTMSDIDKLGIKEVIENTIEYLKSRNVDGVHLSLDVDALDPLETPGTGTRVLGGLSYRESHFALELLHQSHLISSMDLVEVNPLIDSNNHTAEQAVSLVGTFFGETLL
>NZ_LT615218.1|WP_001790708.1|2193784_2193970_-|hypothetical-protein
MLSNKRVEKEAGCEHKKFLKKLLTLNSKVDNMIKSSKTTQLFLKKNFKSVKLTIEITIKTI
>NZ_LT615218.1|WP_000958531.1|2194058_2195123_-|P-loop-NTPase
MLTVDQVKELVGEIKDPIIDVPLKETEGIVEVSIKEEKEHVSVKLAMAQLGGAPQLDLQMAVVNALKENGAKTVGIRFETLPEEKVNQFKPKEENKPKTIEGLLSQNNPVEFIAIASGKGGVGKSTVAVNLAVALAREGKKVGLVDADIYGFSVPDMMGIDEKPGIKGKEVIPVERHGVKVISMAFFVEENAPVIWRGPMLGKMLTNFFTEVKWGDIEYLILDLPPGTGDVALDVHTMLPSSKEIIVTTPHPTAAFVAARAGAMAKHTDHSILGVIENMSYFESKETGNKEYVFGKGGGTKLADELNTQLLGELPLEQPSWNPKDFAPSIYQSDDRLGKIYSSIAQKVIAATNK
>NZ_LT615218.1|WP_001140999.1|2195270_2196713_-|multidrug-efflux-MFS-transporter-LmrS
MAKVELTTRRRNFIVAVMLISAFVAILNQTLLNTALPSIMRELNINESTSQWLVTGFMLVNGVMIPLTAYLMDRIKTRPLYLAAMGTFLLGSIVAALAPNFGVLMLARVIQAMGAGVLMPLMQFTLFTLFSKEHRGFAMGLAGLVIQFAPAIGPTVTGLIIDQASWRVPFIIIVGIAILAFVFGLVSISSYNEVKYTKLDKRSVMYSTIGFGLMLYAFSSAGDLGFTSPIVIGALILSMVIIYLFIRRQFNITNALLNLRVFKNRTFALCTISSMIIMMSMVGPALLIPLYVQNSLSLSALLSGLVIMPGAIINGIMSVFTGKFYDKYGPRPLIYTGFTILTITTIMLCFLHTDTSYTYLIVVYAIRMFSVSLLMMPINTTGINSLRNEEISHGTAIMNFGRVMAGSLGTALMVTLMSFGAKIFLSTSPSHLTATEIKQQSIAIGVDISFAFVAVLVMAAYVIALFIREPKEIESNRRKF
>NZ_LT615218.1|WP_000636857.1|2197034_2197508_-|multidrug-efflux-transporter-SepA
MIVNYLKHKFYNLLTTMIVLFIFVLSGAIFLTFLGFGLYGLSRILIYFRLGDFTYNRSMYDNLLYYGSYIIFGYFIIFAVEHLMDYFRKMLPENAYFRGATFHLISYTVATTLFYFIIHLNYVYINIDFWVIMVIIGFLYVCKLQFYPESKNLNNRK
>NZ_LT615218.1|WP_001237506.1|2197606_2198950_-|MFS-transporter
MRLKSIITVIALILIMFMSAIESSIISLALPTIKQDLNAGNLISLIFTAYFIALVIANPIVGELLSRFKIIYVAIAGLLLFSIGSFMCGLSTNFTMLIISRVIQGFGSGVLMSLSQIVPKLAFEIPLRYKIMGIVGSVWGISSIIGPLLGGGILEFATWHWLFYINIPIAIIAIILVIWTFHFPEEETVAKSKFDTKGLTLFYVFIGLIMFALLNQQLLLLNFLSFILAIVVAMCLFKVEKHVSSPFLPVVEFNRSITLVFITDLLTAICLMGFNLYIPVYLQEQLGLSPLQSGLVIFPLSVAWITLNFNLHRIEAKLSRKVIYLLSFTLLLVSSIIISFGIKLPVLIAFVLILAGLSFGYIYTKDSVIVQEETSPLQMKKMMSFYGLTKNLGASIGSTIMGYLYAIQSGIFGPNLHNVLSAVAVISIGLIVLWVVFFKEQSSQSKE
>NZ_LT615218.1|WP_000047255.1|2199126_2199810_-|hemolysin-III-family-protein
MSKSTKKSNDTIVETFKDIIPLSFGEEIGNAASHGVAALLTLLVLPYAAVHSYIAHGTLASVSMSIYVISIFMMFISSTIYHSMQNETPHKYILRIIDHSMIYVAISGTYTPILLTVVGGWIGWTVFILLWGTTLWGILYKSIAVKVNQKLSLIVYLVMGWVGIILLPIIFIRTSWIFILFIFLGGVSYTIGAWFYAQKNRPYFHMIWHIFIVIASLLHLIAILYFM

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	248761-248792	1	0.969
NZ_LT615218_1	1.2\|248705\|33\|NZ_LT615218\|CRISPRCasFinder	248705-248737	33	NZ_LT615218.1	1132939-1132971	1	0.97
NZ_LT615218_1	1.2\|248705\|33\|NZ_LT615218\|CRISPRCasFinder	248705-248737	33	NZ_LT615218.1	1216623-1216655	1	0.97
NZ_LT615218_1	1.2\|248705\|33\|NZ_LT615218\|CRISPRCasFinder	248705-248737	33	NZ_LT615218.1	1216679-1216711	1	0.97
NZ_LT615218_1	1.2\|248705\|33\|NZ_LT615218\|CRISPRCasFinder	248705-248737	33	NZ_LT615218.1	1625989-1626021	1	0.97
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	129706-129737	2	0.938
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	939023-939054	2	0.938
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	1216452-1216483	2	0.938
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	1342486-1342517	2	0.938
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	1611403-1611434	2	0.938
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	1625932-1625963	2	0.938
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_LT615218.1	1933115-1933146	2	0.938
NZ_LT615218_1	1.2\|248705\|33\|NZ_LT615218\|CRISPRCasFinder	248705-248737	33	NZ_LT615218.1	2728487-2728519	2	0.939

1. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 248761-248792, mismatch: 1, identity: 0.969

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggtaa	Protospacer
**.*****************************

2. spacer 1.2|248705|33|NZ_LT615218|CRISPRCasFinder matches to position: 1132939-1132971, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

3. spacer 1.2|248705|33|NZ_LT615218|CRISPRCasFinder matches to position: 1216623-1216655, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

4. spacer 1.2|248705|33|NZ_LT615218|CRISPRCasFinder matches to position: 1216679-1216711, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

5. spacer 1.2|248705|33|NZ_LT615218|CRISPRCasFinder matches to position: 1625989-1626021, mismatch: 1, identity: 0.97

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcagcttacaataatg	Protospacer
********************** **********

6. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 129706-129737, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

7. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 939023-939054, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

8. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 1216452-1216483, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

9. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 1342486-1342517, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

10. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 1611403-1611434, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

11. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 1625932-1625963, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

12. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to position: 1933115-1933146, mismatch: 2, identity: 0.938

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
cagagaatttcgaaaagaaattctacaggcaa	Protospacer
**.**************************.**

13. spacer 1.2|248705|33|NZ_LT615218|CRISPRCasFinder matches to position: 2728487-2728519, mismatch: 2, identity: 0.939

tagaagctggcggaaagtcagcatacaataatg	CRISPR spacer
tagaagctggcggaaagtcaggttacaataatg	Protospacer
*********************  **********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_KY270853	Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence	37339-37370	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_KX839207	Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence	106205-106236	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP021328	Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence	319442-319473	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP025467	Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence	229082-229113	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP019048	Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence	17455-17486	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NC_018107	Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence	206727-206758	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP022441	Klebsiella sp. LY plasmid unnamed3, complete sequence	191028-191059	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	KU318421	Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence	37881-37912	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NC_023911	Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence	256422-256453	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP025964	Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence	172857-172888	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP038277	Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence	221440-221471	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP024641	Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence	281239-281270	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	CP027603	UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence	71493-71524	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP046614	Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence	37800-37831	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP026014	Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence	118204-118235	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP026019	Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence	275327-275358	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_MF344561	Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence	38947-38978	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_MF344566	Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence	37553-37584	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_MF344562	Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence	40101-40132	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_MF344567	Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence	37881-37912	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_MF344563	Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence	37792-37823	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_MF344564	Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence	38947-38978	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP026369	Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence	83124-83155	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NZ_CP028952	Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence	436045-436076	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	MN661402	Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence	222862-222893	7	0.781
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	MK599315	Pseudomonas phage PA1C, complete genome	261289-261320	7	0.781
NZ_LT615218_3	3.1\|2176278\|34\|NZ_LT615218\|CRISPRCasFinder	2176278-2176311	34	JN882286	Cronobacter phage vB_CsaP_GAP52, complete genome	23034-23067	8	0.765
NZ_LT615218_3	3.1\|2176278\|34\|NZ_LT615218\|CRISPRCasFinder	2176278-2176311	34	CP030544	Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence	7567-7600	8	0.765
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	NC_010371	Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence	149144-149175	10	0.688
NZ_LT615218_1	1.1\|248650\|32\|NZ_LT615218\|CRISPRCasFinder	248650-248681	32	MN103543	Pseudomonas phage vB_PaeM_PS119XW, complete genome	261900-261931	10	0.688

1. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_KY270853 (Raoultella ornithinolytica strain YNKP001 plasmid pYNKP001-dfrA, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

2. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_KX839207 (Klebsiella pneumoniae strain KP1814 plasmid pKP1814-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

3. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP021328 (Raoultella ornithinolytica strain Ro24724 plasmid pRo24724, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

4. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP025467 (Klebsiella pneumoniae strain JS187 plasmid p187-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

5. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP019048 (Klebsiella pneumoniae subsp. pneumoniae strain RJA166 plasmid pRJA166a, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

6. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NC_018107 (Klebsiella michiganensis E718 plasmid pKOX_R1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

7. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP022441 (Klebsiella sp. LY plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

8. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to KU318421 (Klebsiella pneumoniae strain KP04 plasmid pKP04VIM, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

9. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NC_023911 (Raoultella planticola strain KpNDM1 plasmid pKpNDM1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

10. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP025964 (Klebsiella pneumoniae strain WCHKP34 plasmid pIMP4_LL34, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

11. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP038277 (Raoultella ornithinolytica strain WLK218 plasmid pWLK-238550, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

12. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP024641 (Klebsiella michiganensis strain F107 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

13. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to CP027603 (UNVERIFIED_ORG: Klebsiella pneumoniae strain AR_0080 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

14. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP046614 (Klebsiella pneumoniae strain WCGKP294 plasmid pWCGKP294-2, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

15. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP026014 (Klebsiella variicola strain 13450 plasmid p13450-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

16. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP026019 (Klebsiella pneumoniae strain 13190 plasmid p13190-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

17. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_MF344561 (Klebsiella pneumoniae strain 11219 plasmid p11219-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

18. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_MF344566 (Klebsiella pneumoniae strain A324 plasmid pA324-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

19. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_MF344562 (Klebsiella pneumoniae strain 12208 plasmid p12208-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

20. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_MF344567 (Klebsiella pneumoniae strain A708 plasmid pA708-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

21. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_MF344563 (Klebsiella pneumoniae strain 13190 plasmid p13190-VIM, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

22. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_MF344564 (Klebsiella pneumoniae strain 13450 plasmid p13450-IMP, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

23. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP026369 (Klebsiella quasipneumoniae strain A708 plasmid pA708-1, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

24. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NZ_CP028952 (Klebsiella aerogenes strain AR_0161 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

25. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to MN661402 (Klebsiella quasipneumoniae strain KP18-31 plasmid pKP18-31-IMP,KPC, complete sequence) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa-	CRISPR spacer
caaggaatttcgtaaagaaattc-acagcagcg	Protospacer
***.******** ********** ****  .

26. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 7, identity: 0.781

caaagaatttcgaaaagaaattctacaggtaa--	CRISPR spacer
gaaacaattgcgaaaagaaattct--gagtaata	Protospacer
 *** **** **************  ..****

27. spacer 3.1|2176278|34|NZ_LT615218|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **

28. spacer 3.1|2176278|34|NZ_LT615218|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

29. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to NC_010371 (Finegoldia magna ATCC 29328 plasmid pFMC, complete sequence) position: , mismatch: 10, identity: 0.688

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
gaaagaatttcaaaaagaaatactctttagca	Protospacer
 **********.********* ** .  .  *

30. spacer 1.1|248650|32|NZ_LT615218|CRISPRCasFinder matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 10, identity: 0.688

caaagaatttcgaaaagaaattctacaggtaa	CRISPR spacer
gaaacaattgcgaaaagaaattctgagcaata	Protospacer
 *** **** **************. . .  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

706543 : 714363

Hokovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244415.1\|706543_707599_-	two-component system sensor histidine kinase SaeS	A0A1V0SGX0	Hokovirus	3.6e-14	29.8
WP_000149344.1\|707598_708285_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|708259_708733_-	DoxX family protein	NA	NA	NA	NA
WP_001093556.1\|709074_709515_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637687.1\|709794_710379_-	hypothetical protein	NA	NA	NA	NA
WP_001062972.1\|710477_711191_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|711194_711614_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|711615_712284_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604515.1\|712634_713228_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.2e-38	43.5
WP_001217794.1\|713211_714363_+	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	3.5e-23	36.1

DBSCAN-SWA_2

726336 : 740735

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000663014.1\|726336_727395_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	1.8e-21	26.7
WP_000197262.1\|727689_728232_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429006.1\|728912_729830_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.0
WP_031835073.1\|729920_730022_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|730099_731605_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_064127081.1\|731945_732446_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.7e-52	71.5
WP_064127082.1\|732465_733332_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|734132_734531_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855505.1\|734493_736599_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562498.1\|736716_737688_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000499195.1\|737868_738024_+	hypothetical protein	NA	NA	NA	NA
WP_000876318.1\|738062_739034_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_001245577.1\|739020_739977_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000616840.1\|739973_740735_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	6.5e-18	31.6

DBSCAN-SWA_3

788069 : 845559

Staphylococcus_phage(71.83%)

transposase,head,holin,plate,portal,integrase,capsid,terminase,tail

attL 807763:807779|attR 843880:843896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069991873.1\|788069_789374_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.1e-195	80.7
WP_000785252.1\|789712_790171_+	hypothetical protein	NA	NA	NA	NA
WP_000556760.1\|790237_790471_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_001165957.1\|790586_791327_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_031865113.1\|791360_793733_+	ribonuclease R	Q0GXV6	Lactococcus_phage	4.6e-94	39.2
WP_001085185.1\|793754_794219_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
WP_000146089.1\|794730_795780_-\|integrase	site-specific integrase	W5R968	Staphylococcus_phage	1.4e-196	99.4
WP_031897702.1\|795841_796345_-	hypothetical protein	A9CR44	Staphylococcus_phage	7.5e-47	100.0
WP_000874710.1\|796399_797038_-	LexA family transcriptional regulator	A0A0E3TAG1	Staphylococcus_phage	8.8e-117	100.0
WP_001106627.1\|797227_797482_+	helix-turn-helix transcriptional regulator	B7T095	Staphylococcus_virus	7.7e-40	96.4
WP_001157027.1\|797625_798345_+	phage repressor protein	A0A059T7N7	Staphylococcus_phage	2.3e-113	87.9
WP_000455727.1\|798357_798567_+	hypothetical protein	A0A2H4PQR1	Staphylococcus_phage	2.2e-32	98.6
WP_001285964.1\|798579_798741_+	DUF1270 domain-containing protein	A9CR58	Staphylococcus_phage	1.1e-20	98.1
WP_061838581.1\|798830_799091_+	DUF1108 family protein	Q4ZDY8	Staphylococcus_virus	3.3e-38	86.0
WP_001205732.1\|799099_799363_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000138475.1\|801315_802236_+	recombinase RecT	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
WP_072507301.1\|802316_802934_+	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	1.0e-85	98.8
WP_069991876.1\|802934_803405_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	8.2e-80	96.2
WP_000148298.1\|803434_804319_+	DnaD domain protein	S4V6D4	Staphylococcus_phage	1.1e-138	96.9
WP_000338528.1\|804325_804544_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000401972.1\|804552_804957_+	RusA family crossover junction endodeoxyribonuclease	O80087	Staphylococcus_phage	8.7e-70	95.5
WP_069991878.1\|804969_805341_+	hypothetical protein	C5I648	Staphylococcus_phage	6.8e-53	94.3
WP_000022728.1\|805340_805598_+	DUF3310 domain-containing protein	A0A2I6PEN5	Staphylococcus_phage	2.6e-43	100.0
WP_000235324.1\|805600_805801_+	hypothetical protein	A0A2I6PEM3	Staphylococcus_phage	2.5e-30	100.0
WP_069991881.1\|805815_806058_+	hypothetical protein	A0A2I6PE14	Staphylococcus_phage	3.6e-39	97.5
WP_000694061.1\|806070_806496_+	hypothetical protein	B7T0H5	Staphylococcus_virus	1.5e-56	80.3
WP_000983952.1\|806492_806687_+	hypothetical protein	B7T0H6	Staphylococcus_virus	2.4e-25	92.2
WP_000982713.1\|806683_807121_+	hypothetical protein	NA	NA	NA	NA
WP_001105603.1\|807117_807402_+	hypothetical protein	A0A2I6PDI3	Staphylococcus_phage	2.8e-43	95.7
WP_001065076.1\|807394_807646_+	DUF1024 family protein	A0A1W6JPK6	Staphylococcus_phage	4.6e-37	98.8
WP_000028423.1\|807635_807809_+	hypothetical protein	A0A2H4PQJ2	Staphylococcus_phage	2.3e-24	98.2
807763:807779	attL	NA	NA	NA	NA
WP_000889680.1\|807809_807971_+	hypothetical protein	W5R9K6	Staphylococcus_phage	5.4e-23	98.1
WP_001061837.1\|807985_808513_+	dUTP diphosphatase	I1W653	Staphylococcus_phage	3.3e-93	97.7
WP_001282074.1\|808549_808795_+	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
WP_000195832.1\|808791_808998_+	DUF1381 domain-containing protein	A7TWH8	Staphylococcus_phage	4.9e-29	97.1
WP_000141259.1\|808994_809198_+	hypothetical protein	A7TWH9	Staphylococcus_phage	8.8e-31	100.0
WP_000608283.1\|809190_809427_+	hypothetical protein	A7TWI0	Staphylococcus_phage	3.6e-36	100.0
WP_001568228.1\|809416_809806_+	hypothetical protein	M9QX07	Staphylococcus_phage	2.8e-65	100.0
WP_000595258.1\|809802_809976_+	transcriptional activator RinB	A1KX88	Staphylococcus_virus	3.7e-22	100.0
WP_000286968.1\|809976_810378_+	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_000594088.1\|810732_811227_+\|terminase	terminase small subunit	A0A0N9BAX3	Staphylococcus_phage	3.4e-84	100.0
WP_001037578.1\|811219_812443_+\|terminase	PBSX family phage terminase large subunit	A0A0N9BAX9	Staphylococcus_phage	7.5e-242	100.0
WP_000177426.1\|812439_813864_+\|portal	phage portal protein	A0A0E3T9I6	Staphylococcus_phage	4.8e-272	100.0
WP_029549386.1\|813832_814783_+\|head	phage head morphogenesis protein	A0A0H3U2Z4	Staphylococcus_phage	5.6e-176	99.7
WP_001019221.1\|814878_815463_+	DUF4355 domain-containing protein	A0A2H4JDY6	uncultured_Caudovirales_phage	7.3e-78	100.0
WP_000235168.1\|815479_816394_+\|capsid	phage major capsid protein	A0A0H3U2U7	Staphylococcus_phage	1.2e-170	100.0
WP_000002931.1\|816405_816549_+	hypothetical protein	A0A0E3XC49	Staphylococcus_phage	4.6e-18	100.0
WP_000177351.1\|816554_816905_+\|head,tail	phage head-tail adapter protein	A0A0H3U2R5	Staphylococcus_phage	1.9e-60	100.0
WP_000483041.1\|816916_817252_+\|head	phage head closure protein	A0A0E3TAH8	Staphylococcus_phage	8.8e-60	100.0
WP_001151326.1\|817238_817652_+	HK97 gp10 family phage protein	A0A0N9BAY5	Staphylococcus_phage	4.1e-75	99.3
WP_000270192.1\|817664_818090_+	DUF3168 domain-containing protein	Q4ZBQ9	Staphylococcus_phage	5.5e-75	100.0
WP_000057582.1\|818090_818648_+\|tail	tail protein	Q4ZBQ8	Staphylococcus_phage	8.2e-103	100.0
WP_000134337.1\|818713_819220_+	hypothetical protein	Q4ZBQ7	Staphylococcus_phage	2.7e-92	100.0
WP_000880587.1\|819264_819549_+	hypothetical protein	A0A0N7E0V9	Staphylococcus_phage	8.8e-45	100.0
WP_000379448.1\|819552_822438_+	hypothetical protein	A0A2H4JGV1	uncultured_Caudovirales_phage	0.0e+00	99.7
WP_000560188.1\|822452_823394_+\|tail	phage tail family protein	A0A2H4JFG3	uncultured_Caudovirales_phage	6.7e-182	100.0
WP_001121996.1\|823404_825291_+\|tail	phage tail protein	A1KXA8	Staphylococcus_virus	0.0e+00	99.8
WP_000323256.1\|825303_827202_+	hypothetical protein	A0A0H3U448	Staphylococcus_phage	0.0e+00	98.4
WP_032099400.1\|827201_829025_+\|plate	BppU family phage baseplate upper protein	Q9FZY8	Staphylococcus_virus	1.0e-295	99.8
WP_000705907.1\|829024_829402_+	DUF2977 domain-containing protein	Q4ZDT8	Staphylococcus_virus	8.1e-54	99.2
WP_001790193.1\|829405_829579_+	XkdX family protein	Q8LTH6	Staphylococcus_phage	1.7e-27	100.0
WP_000466769.1\|829619_829919_+	DUF2951 domain-containing protein	Q4ZBP8	Staphylococcus_phage	1.3e-46	100.0
WP_000524038.1\|830055_831930_+	glucosaminidase domain-containing protein	A0A2H4JB48	uncultured_Caudovirales_phage	0.0e+00	99.4
WP_061839003.1\|831942_833181_+\|plate	BppU family phage baseplate upper protein	E0Y3M8	Staphylococcus_virus	2.5e-208	99.0
WP_000398878.1\|833185_833581_+	hypothetical protein	Q4ZBP5	Staphylococcus_phage	2.7e-68	100.0
WP_000339141.1\|833636_833939_+\|holin	phage holin	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
WP_000909212.1\|833949_835404_+	N-acetylmuramoyl-L-alanine amidase	I1W626	Staphylococcus_phage	3.4e-289	99.8
WP_000125169.1\|835934_836141_+	hypothetical protein	Q4ZBW5	Staphylococcus_virus	4.5e-30	100.0
WP_000497652.1\|836155_836356_+	hypothetical protein	Q4ZBW4	Staphylococcus_virus	8.7e-31	97.0
WP_023913537.1\|839097_840288_+	Abi family protein	NA	NA	NA	NA
WP_072398062.1\|840994_841147_+	helix-turn-helix domain-containing protein	A0A2H4PQU1	Staphylococcus_phage	3.6e-05	87.5
WP_001814548.1\|841074_841230_+\|transposase	IS3 family transposase	A0A0C5AJ30	Paenibacillus_phage	6.1e-08	67.3
WP_031865111.1\|841271_841514_+	hypothetical protein	A0A2H4PQV6	Staphylococcus_phage	3.3e-24	86.8
WP_029727366.1\|841593_842055_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2I7SC85	Paenibacillus_phage	1.2e-43	55.8
WP_000158489.1\|842282_842930_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_000598564.1\|842922_843330_+	hypothetical protein	NA	NA	NA	NA
WP_072398063.1\|844515_844929_+	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	1.1e-32	67.9
843880:843896	attR	NA	NA	NA	NA
WP_000813311.1\|845046_845559_+	hypothetical protein	Q4ZE83	Staphylococcus_phage	1.4e-69	100.0

DBSCAN-SWA_4

1033482 : 1041955

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000861572.1\|1033482_1033965_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
WP_001010412.1\|1033951_1035076_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174053.1\|1035079_1035784_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_000848350.1\|1035783_1036047_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666799.1\|1036048_1036720_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032746.1\|1036712_1038902_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.6e-141	39.8
WP_000483713.1\|1038880_1040365_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_000030817.1\|1040357_1041386_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.8e-61	41.4
WP_000238660.1\|1041388_1041955_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.2e-30	40.7

DBSCAN-SWA_5

1299296 : 1305674

Staphylococcus_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001814546.1\|1299296_1299494_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	50.0
WP_077156057.1\|1300181_1300406_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	2.5e-18	71.0
WP_001002340.1\|1300695_1300902_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
WP_000006110.1\|1302138_1302324_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
WP_001215405.1\|1304307_1304481_-	hypothetical protein	A0A059NT83	Lactococcus_phage	4.7e-09	51.9
WP_000585093.1\|1304892_1305144_+	hypothetical protein	NA	NA	NA	NA
WP_000572946.1\|1305320_1305674_+	hypothetical protein	A0A1J0MF61	Staphylococcus_phage	6.5e-21	44.4

DBSCAN-SWA_6

1582964 : 1591276

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001213908.1\|1582964_1583750_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
WP_000924214.1\|1583875_1584766_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062174.1\|1584775_1586122_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	9.1e-55	33.4
WP_000683928.1\|1586235_1587336_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	4.0e-08	29.6
WP_000624572.1\|1587338_1588016_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|1588146_1589253_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217261.1\|1589476_1591276_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0

DBSCAN-SWA_7

1660996 : 1670039

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000364542.1\|1660996_1661515_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_000594985.1\|1661536_1663810_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.1e-63	29.1
WP_069991986.1\|1664012_1666292_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.4e-31	35.8
WP_001160682.1\|1666566_1666827_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112042.1\|1666845_1667985_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.2e-85	44.7
WP_001019178.1\|1668007_1669033_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005767.1\|1669034_1670039_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_8

1793799 : 1859027

Staphylococcus_phage(95.45%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031865067.1\|1793799_1800360_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	1.7e-300	96.8
WP_000836465.1\|1800685_1800997_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_001557386.1\|1801018_1803436_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.5
WP_001025061.1\|1803723_1804905_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_000526539.1\|1805014_1805968_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_000764419.1\|1805964_1806528_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000757543.1\|1806647_1807049_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_069992005.1\|1808627_1809455_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001790712.1\|1809457_1809577_-	hypothetical protein	NA	NA	NA	NA
WP_001196356.1\|1809688_1810690_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.6e-184	99.4
WP_001008549.1\|1810811_1811276_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.5e-70	100.0
WP_001159035.1\|1811288_1812470_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
WP_000493888.1\|1812480_1813113_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.4e-113	100.0
WP_000077352.1\|1813119_1814163_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.0e-195	98.8
WP_001261687.1\|1814644_1816147_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_000989117.1\|1816982_1818275_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	100.0
WP_001032833.1\|1818361_1819216_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|1819491_1819716_-	hypothetical protein	NA	NA	NA	NA
WP_000671053.1\|1819914_1820385_+	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	2.3e-82	98.7
WP_064127177.1\|1820497_1820941_+	competence protein ComK	NA	NA	NA	NA
WP_001030469.1\|1820927_1821371_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_001168911.1\|1821666_1822302_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001096494.1\|1822740_1823454_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091445.1\|1823713_1824016_+	hypothetical protein	NA	NA	NA	NA
WP_001200543.1\|1824271_1824637_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	2.4e-58	99.2
WP_000623478.1\|1824633_1824987_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.6e-22	100.0
WP_000453313.1\|1827210_1828044_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.5e-158	99.6
WP_000366163.1\|1828255_1829164_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
WP_000933822.1\|1829288_1830482_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000109898.1\|1830853_1832446_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
WP_072398270.1\|1832823_1833570_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	2.4e-142	98.4
WP_000672007.1\|1833574_1834048_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.1e-83	98.1
WP_000718107.1\|1834113_1834371_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000778520.1\|1834367_1835369_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	1.3e-186	98.2
WP_000348351.1\|1835373_1836852_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	5.3e-282	97.0
WP_072398272.1\|1837010_1837466_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.0e-79	98.6
WP_072398259.1\|1837768_1838419_+	excalibur calcium-binding domain-containing protein	A0A2H4PQM8	Staphylococcus_phage	5.2e-56	98.6
WP_000070636.1\|1838499_1839495_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	5.3e-68	82.7
WP_000627533.1\|1840236_1840578_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	6.6e-55	94.7
WP_000414207.1\|1840678_1841251_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	3.2e-25	94.8
WP_000494957.1\|1841448_1842078_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	1.2e-78	98.1
WP_000809857.1\|1842191_1842377_-	hypothetical protein	NA	NA	NA	NA
WP_000375475.1\|1842378_1842555_-	hypothetical protein	NA	NA	NA	NA
WP_000731412.1\|1843661_1844105_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000439996.1\|1844104_1844548_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_031865258.1\|1844590_1846201_+	lipase	NA	NA	NA	NA
WP_000095392.1\|1846215_1846515_+	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_069992008.1\|1848626_1849865_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.9e-43	36.0
WP_000028605.1\|1849857_1851414_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.0e-288	99.4
WP_031865257.1\|1851578_1851713_-	hypothetical protein	NA	NA	NA	NA
WP_001038688.1\|1851777_1852497_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
WP_001038680.1\|1852647_1853367_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	1.6e-127	97.5
WP_064127181.1\|1853534_1854251_-\|protease	serine protease	A0A2H4PQN5	Staphylococcus_phage	1.8e-86	65.5
WP_001039438.1\|1854372_1855092_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	1.6e-114	86.6
WP_001038877.1\|1855149_1855872_-\|protease	serine protease	A0A2H4PQN0	Staphylococcus_phage	2.7e-114	85.0
WP_001039447.1\|1855929_1856652_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
WP_001039429.1\|1856776_1857484_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	1.5e-125	96.6
WP_001092752.1\|1858445_1859027_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	1.2e-51	61.1

DBSCAN-SWA_9

1946014 : 2042518

114

Staphylococcus_phage(87.34%)

head,holin,tRNA,portal,capsid,integrase,protease,terminase,tail

attL 1942451:1942475|attR 2044624:2044648

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1942451:1942475	attL	NA	NA	NA	NA
WP_000170162.1\|1946014_1946317_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
WP_000957020.1\|1946683_1948222_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000831700.1\|1948310_1949510_-	CamS family sex pheromone protein	NA	NA	NA	NA
WP_000774565.1\|1949522_1951526_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
WP_000992921.1\|1951529_1953722_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272071.1\|1953718_1954411_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|1954582_1954885_-	hypothetical protein	NA	NA	NA	NA
WP_000572878.1\|1954993_1956289_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9
WP_000827764.1\|1957149_1958316_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
WP_000434933.1\|1958346_1958673_+	staphostatin A	NA	NA	NA	NA
WP_000669864.1\|1958964_1959138_-	NETI motif-containing protein	NA	NA	NA	NA
WP_000011542.1\|1959118_1959721_-	DUF2179 domain-containing protein	NA	NA	NA	NA
WP_000040866.1\|1959991_1960813_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.3e-69	52.7
WP_000284424.1\|1960805_1962275_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.0e-107	44.9
WP_000897643.1\|1962458_1963535_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
WP_001177827.1\|1963554_1964349_+	prephenate dehydratase	NA	NA	NA	NA
WP_001802312.1\|1964420_1964528_+	hypothetical protein	NA	NA	NA	NA
WP_000323154.1\|1964538_1966101_-	SLC13 family permease	NA	NA	NA	NA
WP_000275705.1\|1966305_1967403_-	pectate lyase	U5PWM6	Bacillus_phage	3.3e-47	34.6
WP_000149686.1\|1967774_1968335_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
WP_001140871.1\|1968387_1969317_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
WP_072398251.1\|1969509_1969683_-	hypothetical protein	NA	NA	NA	NA
WP_001021226.1\|1969734_1971114_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_000181322.1\|1971233_1972262_-	lactonase family protein	NA	NA	NA	NA
WP_000205106.1\|1972531_1972933_+	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
WP_000267034.1\|1973564_1973738_-	hypothetical protein	NA	NA	NA	NA
WP_064127167.1\|1974188_1975229_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713072.1\|1975285_1976128_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033971.1\|1976124_1976682_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966288.1\|1976741_1977266_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|1977386_1977950_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221651.1\|1978015_1978756_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763051.1\|1978755_1979628_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	2.1e-28	35.2
WP_000645724.1\|1979624_1980305_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
WP_000991304.1\|1980305_1981202_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691587.1\|1981198_1981579_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681968.1\|1981837_1982014_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|1982256_1982355_-	hypothetical protein	NA	NA	NA	NA
WP_001068523.1\|1982554_1983841_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_054189050.1\|1984465_1986214_-	MAP domain-containing protein	NA	NA	NA	NA
WP_000669791.1\|1987172_1987352_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	1.4e-24	98.3
WP_001791826.1\|1987662_1987923_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_031906254.1\|1987975_1988326_-	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	4.9e-53	99.1
WP_000920038.1\|1989822_1990314_-	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
WP_000861038.1\|1990504_1991260_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000611512.1\|1991271_1991526_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_001791821.1\|1991577_1991685_+	hypothetical protein	NA	NA	NA	NA
WP_072353918.1\|1991737_1991914_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	5.5e-21	94.8
WP_000340977.1\|1992056_1992431_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_001262620.1\|1992486_1992774_-	hypothetical protein	C5I682	Staphylococcus_phage	9.9e-44	100.0
WP_001000058.1\|1992819_1992972_-	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
WP_000582132.1\|1992964_1996747_-	hypothetical protein	A0A1V0E5H3	Staphylococcus_phage	0.0e+00	99.9
WP_001154317.1\|1996762_1998253_-\|tail	phage tail family protein	R9QST9	Staphylococcus_phage	3.1e-298	100.0
WP_031906215.1\|1998252_2002902_-\|tail	phage tail tape measure protein	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	96.4
WP_000571956.1\|2002957_2003080_-	hypothetical protein	D2JLF6	Staphylococcus_phage	2.6e-14	97.5
WP_000442601.1\|2003139_2003586_-	hypothetical protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
WP_000570652.1\|2003650_2004604_-	Ig-like domain-containing protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
WP_000611449.1\|2004604_2004985_-	hypothetical protein	D2JLF3	Staphylococcus_phage	1.3e-67	99.2
WP_000501244.1\|2004981_2005359_-	HK97 gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
WP_000975314.1\|2005358_2005694_-\|head,tail	head-tail adaptor protein	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
WP_031906214.1\|2005680_2006013_-\|head,tail	phage head-tail connector protein	D2JLF0	Staphylococcus_phage	3.1e-57	98.2
WP_001252099.1\|2006021_2006180_-	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
WP_000849957.1\|2006215_2007463_-\|capsid	phage major capsid protein	Q8SDK8	Staphylococcus_phage	5.9e-210	97.6
WP_000032523.1\|2007550_2008135_-\|head,protease	HK97 family phage prohead protease	D2JLE7	Staphylococcus_phage	2.9e-106	99.5
WP_000511064.1\|2008127_2009378_-\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	6.3e-236	99.5
WP_000365301.1\|2009383_2009584_-	hypothetical protein	D2JLE5	Staphylococcus_phage	2.2e-26	98.5
WP_069992010.1\|2009597_2011292_-\|terminase	terminase	D2JLE4	Staphylococcus_phage	0.0e+00	99.8
WP_000919026.1\|2011294_2011762_-\|terminase	phage terminase small subunit P27 family	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
WP_000817289.1\|2011889_2012234_-	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.2e-65	100.0
WP_000406191.1\|2012249_2012702_-	nucleoside triphosphate pyrophosphohydrolase family protein	D2JLE1	Staphylococcus_phage	1.4e-79	100.0
WP_000282758.1\|2012816_2013287_-	hypothetical protein	D2JLE0	Staphylococcus_phage	5.0e-69	98.5
WP_000265041.1\|2013309_2013510_-	DUF1514 family protein	R9QT57	Staphylococcus_phage	1.1e-28	100.0
WP_000595305.1\|2014316_2014466_-	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	8.2e-18	98.0
WP_000592201.1\|2014462_2014849_-	hypothetical protein	A0A0N9BB01	Staphylococcus_phage	3.7e-62	96.9
WP_000195803.1\|2014845_2015052_-	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	1.3e-29	100.0
WP_001282074.1\|2015048_2015294_-	hypothetical protein	A0A2I6PDW7	Staphylococcus_phage	5.0e-36	100.0
WP_001061838.1\|2015330_2015864_-	dUTP diphosphatase	U5U798	Staphylococcus_phage	7.4e-93	97.7
WP_000889682.1\|2015878_2016040_-	hypothetical protein	W5R9K6	Staphylococcus_phage	1.4e-23	100.0
WP_049274456.1\|2016040_2016322_-	hypothetical protein	A0A2I6PDX3	Staphylococcus_phage	3.6e-46	95.7
WP_000028424.1\|2016322_2016496_-	hypothetical protein	A0A2H4PQJ2	Staphylococcus_phage	1.8e-24	100.0
WP_001065046.1\|2016485_2016737_-	DUF1024 family protein	G4KNP4	Staphylococcus_phage	4.1e-38	96.4
WP_000131381.1\|2016751_2016994_-	hypothetical protein	A0A1P8L6E3	Staphylococcus_phage	3.0e-41	100.0
WP_000101270.1\|2016997_2017366_-	hypothetical protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
WP_000401965.1\|2017378_2017834_-	RusA family crossover junction endodeoxyribonuclease	A0A1P8L6F2	Staphylococcus_phage	5.9e-83	99.3
WP_000338527.1\|2017842_2018061_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	4.0e-37	98.6
WP_000148327.1\|2018067_2018961_-	DnaD domain-containing protein	A0A0E3TAG7	Staphylococcus_phage	6.3e-137	97.3
WP_000934762.1\|2018990_2019461_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	6.3e-80	98.7
WP_072353921.1\|2019461_2020079_-	MBL fold metallo-hydrolase	A0A1W6JPL3	Staphylococcus_phage	1.3e-85	98.1
WP_000138475.1\|2020159_2021080_-	recombinase RecT	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
WP_001205732.1\|2023032_2023296_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000291489.1\|2023304_2023565_-	DUF1108 family protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
WP_000066020.1\|2023657_2023819_-	DUF1270 domain-containing protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
WP_069992011.1\|2023815_2024109_-	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	4.0e-48	100.0
WP_000801108.1\|2024158_2024386_+	hypothetical protein	A7TWL9	Staphylococcus_phage	1.7e-38	100.0
WP_000389906.1\|2024387_2024579_-	hypothetical protein	A7TWL8	Staphylococcus_phage	2.8e-26	100.0
WP_000768245.1\|2024628_2024985_+	DUF2513 domain-containing protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
WP_001148852.1\|2024979_2025174_-	hypothetical protein	A0A1P8L6G6	Staphylococcus_phage	4.3e-19	100.0
WP_001148641.1\|2025189_2025942_-	phage antirepressor KilAC domain-containing protein	A0A0H3U319	Staphylococcus_phage	7.4e-139	99.6
WP_001153965.1\|2026098_2026407_-	hypothetical protein	S4V9P0	Staphylococcus_phage	1.3e-49	100.0
WP_001198673.1\|2026421_2026640_-	helix-turn-helix transcriptional regulator	Q8SDX1	Staphylococcus_phage	2.9e-35	100.0
WP_000358221.1\|2026781_2027501_+	helix-turn-helix transcriptional regulator	Q8SDX2	Staphylococcus_phage	1.9e-131	99.2
WP_000705240.1\|2027700_2027883_+	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
WP_001013104.1\|2027918_2028065_+	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
WP_000191459.1\|2028061_2028676_-	hypothetical protein	A7TW88	Staphylococcus_phage	7.9e-107	100.0
WP_000857176.1\|2028783_2029821_+\|integrase	site-specific integrase	A7TWL3	Staphylococcus_phage	3.4e-179	100.0
WP_000595401.1\|2030939_2031956_-	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	2.3e-26	29.3
WP_000791415.1\|2031977_2033030_-	bi-component leukocidin LukGH subunit H	A0A2I6PER8	Staphylococcus_phage	1.3e-35	32.1
WP_000206630.1\|2033465_2034689_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_001108473.1\|2035186_2036056_-	DMT family transporter	NA	NA	NA	NA
WP_000278575.1\|2036058_2037261_-	5-aminolevulinate synthase	D2TEZ5	Emiliania_huxleyi_virus	8.4e-36	27.6
WP_001045345.1\|2037776_2039084_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000240642.1\|2039622_2041239_-	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
WP_000917289.1\|2041314_2041599_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
WP_000197634.1\|2041774_2042518_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
2044624:2044648	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT615218

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection