Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT618783 Propionibacterium freudenreichii isolate PFRJS25 chromosome I 5 crisprs csa3,cas3,WYL,DinG,DEDDh,csb1gr7,csb2gr5,csb3,cas1,cas2 2 20 7 0
NZ_LT618784 Propionibacterium freudenreichii isolate PFRJS25 chromosome II 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_LT618783
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT618783_1 218415-218579 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT618783_2 2042081-2045018 Unclear NA
40 spacers
cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT618783_3 2046491-2046954 Unclear NA
6 spacers
cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT618783_4 2050901-2051519 Unclear NA
8 spacers
cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT618783_5 2366901-2367008 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT618783_2 2.6|2042479|37|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2042479-2042515 37 NZ_LT618784.1 19561-19597 0 1.0
NZ_LT618783_2 2.7|2042552|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2042552-2042589 38 NZ_LT618784.1 8924-8961 0 1.0

1. spacer 2.6|2042479|37|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to position: 19561-19597, mismatch: 0, identity: 1.0

ttgcatgcgcaagacaaccagagccatcgcggctgcc	CRISPR spacer
ttgcatgcgcaagacaaccagagccatcgcggctgcc	Protospacer
*************************************

2. spacer 2.7|2042552|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to position: 8924-8961, mismatch: 0, identity: 1.0

ctgccccgacacccccgaaggatgcggtgaacgagccg	CRISPR spacer
ctgccccgacacccccgaaggatgcggtgaacgagccg	Protospacer
**************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT618783_2 2.2|2042188|36|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2042188-2042223 36 NC_041894 Propionibacterium phage E6, complete genome 26661-26696 0 1.0
NZ_LT618783_2 2.17|2043280|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043280-2043317 38 KX620751 Propionibacterium phage Doucette, complete genome 19499-19536 0 1.0
NZ_LT618783_2 2.17|2043280|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043280-2043317 38 NC_041894 Propionibacterium phage E6, complete genome 19505-19542 0 1.0
NZ_LT618783_2 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043427-2043461 35 KX620751 Propionibacterium phage Doucette, complete genome 11341-11375 0 1.0
NZ_LT618783_2 2.25|2043856|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043856-2043894 39 KU984979 Propionibacterium phage PFR1, complete genome 5231-5269 0 1.0
NZ_LT618783_2 2.25|2043856|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043856-2043894 39 NC_031108 Propionibacterium phage PFR2, complete genome 5231-5269 0 1.0
NZ_LT618783_2 2.32|2044368|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044368-2044405 38 KU984979 Propionibacterium phage PFR1, complete genome 8125-8162 0 1.0
NZ_LT618783_2 2.32|2044368|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044368-2044405 38 NC_031108 Propionibacterium phage PFR2, complete genome 8125-8162 0 1.0
NZ_LT618783_1 1.1|218439|21|NZ_LT618783|CRISPRCasFinder 218439-218459 21 NZ_CP035418 Leisingera sp. NJS204 plasmid unnamed1, complete sequence 24862-24882 1 0.952
NZ_LT618783_1 1.1|218439|21|NZ_LT618783|CRISPRCasFinder 218439-218459 21 NZ_CP041156 Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence 73773-73793 1 0.952
NZ_LT618783_1 1.1|218439|21|NZ_LT618783|CRISPRCasFinder 218439-218459 21 NZ_CP038237 Leisingera sp. NJS201 plasmid unnamed3, complete sequence 106383-106403 1 0.952
NZ_LT618783_2 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043204-2043243 40 KX620751 Propionibacterium phage Doucette, complete genome 27745-27784 1 0.975
NZ_LT618783_2 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043204-2043243 40 NC_041891 Propionibacterium phage B22, complete genome 26367-26406 1 0.975
NZ_LT618783_2 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043204-2043243 40 NC_041894 Propionibacterium phage E6, complete genome 29183-29222 1 0.975
NZ_LT618783_2 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043427-2043461 35 NC_041894 Propionibacterium phage E6, complete genome 11389-11423 1 0.971
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_CP039965 Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence 47914-47937 2 0.917
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_AP017656 Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence 121074-121097 2 0.917
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_CP018821 Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence 296836-296859 2 0.917
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 MH444512 Bifidobacterium phage Willi, complete genome 3528-3551 2 0.917
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 MK932884 Bifidobacterium phage PMBT6, complete genome 3528-3551 2 0.917
NZ_LT618783_2 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043204-2043243 40 KX620754 Propionibacterium phage G4, complete genome 26717-26756 2 0.95
NZ_LT618783_2 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043427-2043461 35 KX620754 Propionibacterium phage G4, complete genome 11331-11365 2 0.943
NZ_LT618783_2 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043931-2043968 38 NC_041891 Propionibacterium phage B22, complete genome 34063-34100 2 0.947
NZ_LT618783_2 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043931-2043968 38 NC_041894 Propionibacterium phage E6, complete genome 33563-33600 2 0.947
NZ_LT618783_2 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043931-2043968 38 NC_041890 Propionibacterium phage Anatole, complete genome 30635-30672 2 0.947
NZ_LT618783_2 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043931-2043968 38 KX620752 Propionibacterium phage E1, complete genome 30635-30672 2 0.947
NZ_LT618783_2 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043931-2043968 38 NC_041892 Propionibacterium phage B3, complete genome 31298-31335 2 0.947
NZ_LT618783_2 2.35|2044584|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044584-2044622 39 NC_041890 Propionibacterium phage Anatole, complete genome 8326-8364 2 0.949
NZ_LT618783_2 2.35|2044584|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044584-2044622 39 KX620752 Propionibacterium phage E1, complete genome 8326-8364 2 0.949
NZ_LT618783_2 2.35|2044584|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044584-2044622 39 NC_041892 Propionibacterium phage B3, complete genome 8326-8364 2 0.949
NZ_LT618783_4 4.1|2050938|34|NZ_LT618783|PILER-CR 2050938-2050971 34 NC_041894 Propionibacterium phage E6, complete genome 13018-13051 2 0.941
NZ_LT618783_4 4.9|2050937|34|NZ_LT618783|CRISPRCasFinder,CRT 2050937-2050970 34 NC_041894 Propionibacterium phage E6, complete genome 13018-13051 2 0.941
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_CP022366 Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence 499907-499930 3 0.875
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_AP014707 Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence 49875-49898 3 0.875
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 MT110073 Stenotrophomonas phage vB_SmaS_DLP_3, complete genome 32428-32451 3 0.875
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_CP005085 Sphingobium sp. TKS plasmid pTK1, complete sequence 71885-71908 3 0.875
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 KC170282 Uncultured bacterium plasmid pMBUI6, complete sequence 3102-3125 3 0.875
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 GQ919031 Streptomyces phage ZL12, complete genome 49155-49178 3 0.875
NZ_LT618783_1 1.3|218532|24|NZ_LT618783|CRISPRCasFinder 218532-218555 24 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 1387809-1387832 3 0.875
NZ_LT618783_2 2.14|2043059|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043059-2043096 38 KU984979 Propionibacterium phage PFR1, complete genome 2511-2548 3 0.921
NZ_LT618783_2 2.14|2043059|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043059-2043096 38 NC_031108 Propionibacterium phage PFR2, complete genome 2511-2548 3 0.921
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_CP054842 Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence 106401-106424 4 0.833
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 NZ_CP025613 Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence 415999-416022 4 0.833
NZ_LT618783_1 1.2|218484|24|NZ_LT618783|CRISPRCasFinder 218484-218507 24 MT939492 Xanthomonas phage Xoo-sp14, complete genome 230325-230348 4 0.833
NZ_LT618783_4 4.3|2051082|35|NZ_LT618783|PILER-CR 2051082-2051116 35 KU984979 Propionibacterium phage PFR1, complete genome 21334-21368 4 0.886
NZ_LT618783_4 4.3|2051082|35|NZ_LT618783|PILER-CR 2051082-2051116 35 NC_031108 Propionibacterium phage PFR2, complete genome 22903-22937 4 0.886
NZ_LT618783_4 4.18|2051080|35|NZ_LT618783|CRT 2051080-2051114 35 KU984979 Propionibacterium phage PFR1, complete genome 21334-21368 4 0.886
NZ_LT618783_4 4.18|2051080|35|NZ_LT618783|CRT 2051080-2051114 35 NC_031108 Propionibacterium phage PFR2, complete genome 22903-22937 4 0.886
NZ_LT618783_2 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043204-2043243 40 KU984979 Propionibacterium phage PFR1, complete genome 26564-26603 5 0.875
NZ_LT618783_2 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043204-2043243 40 NC_031108 Propionibacterium phage PFR2, complete genome 28133-28172 5 0.875
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NZ_CP027859 Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence 897943-897977 6 0.829
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NZ_CP032054 Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence 499712-499746 6 0.829
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NZ_CP016560 Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence 156968-157002 6 0.829
NZ_LT618783_2 2.11|2042841|34|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2042841-2042874 34 NZ_CP007794 Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence 1408863-1408896 7 0.794
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 MN234174 Mycobacterium phage Efra2, complete genome 17303-17337 8 0.771
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 MN234201 Mycobacterium phage Guanica15, complete genome 17319-17353 8 0.771
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 415914-415948 8 0.771
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 272143-272177 8 0.771
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 374483-374517 8 0.771
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NC_013857 Azospirillum sp. B510 plasmid pAB510c, complete sequence 247450-247484 8 0.771
NZ_LT618783_2 2.24|2043783|37|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043783-2043819 37 KU984979 Propionibacterium phage PFR1, complete genome 26469-26505 9 0.757
NZ_LT618783_2 2.24|2043783|37|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043783-2043819 37 NC_031108 Propionibacterium phage PFR2, complete genome 28038-28074 9 0.757
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 MN234165 Mycobacterium phage Yunkel11, complete genome 17319-17353 9 0.743
NZ_LT618783_2 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2044659-2044693 35 NC_047804 Ralstonia phage RS-PII-1, complete genome 8222-8256 9 0.743
NZ_LT618783_2 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043427-2043461 35 NZ_CP049158 Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence 439457-439491 10 0.714
NZ_LT618783_2 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT 2043427-2043461 35 NZ_CP049318 Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence 438666-438700 10 0.714
NZ_LT618783_5 5.1|2366938|34|NZ_LT618783|CRISPRCasFinder 2366938-2366971 34 CP000663 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence 104107-104140 10 0.706
NZ_LT618783_5 5.1|2366938|34|NZ_LT618783|CRISPRCasFinder 2366938-2366971 34 NZ_CP031752 Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence 50213-50246 10 0.706

1. spacer 2.2|2042188|36|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

taccgacacccttggcgggatgcagcgaatggcaat	CRISPR spacer
taccgacacccttggcgggatgcagcgaatggcaat	Protospacer
************************************

2. spacer 2.17|2043280|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 0, identity: 1.0

tttctcgctaaccttccgggcgatgtcgattggctcgc	CRISPR spacer
tttctcgctaaccttccgggcgatgtcgattggctcgc	Protospacer
**************************************

3. spacer 2.17|2043280|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 0, identity: 1.0

tttctcgctaaccttccgggcgatgtcgattggctcgc	CRISPR spacer
tttctcgctaaccttccgggcgatgtcgattggctcgc	Protospacer
**************************************

4. spacer 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 0, identity: 1.0

gcaatcgagaacgcccccaccagcgccgagatcgc	CRISPR spacer
gcaatcgagaacgcccccaccagcgccgagatcgc	Protospacer
***********************************

5. spacer 2.25|2043856|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 0, identity: 1.0

gcatccgaagcggtgaccattccggcgatcgtgcgggga	CRISPR spacer
gcatccgaagcggtgaccattccggcgatcgtgcgggga	Protospacer
***************************************

6. spacer 2.25|2043856|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 0, identity: 1.0

gcatccgaagcggtgaccattccggcgatcgtgcgggga	CRISPR spacer
gcatccgaagcggtgaccattccggcgatcgtgcgggga	Protospacer
***************************************

7. spacer 2.32|2044368|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 0, identity: 1.0

acgtccaagcatttcaagttctgcgccaatgcgcgcat	CRISPR spacer
acgtccaagcatttcaagttctgcgccaatgcgcgcat	Protospacer
**************************************

8. spacer 2.32|2044368|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 0, identity: 1.0

acgtccaagcatttcaagttctgcgccaatgcgcgcat	CRISPR spacer
acgtccaagcatttcaagttctgcgccaatgcgcgcat	Protospacer
**************************************

9. spacer 1.1|218439|21|NZ_LT618783|CRISPRCasFinder matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

10. spacer 1.1|218439|21|NZ_LT618783|CRISPRCasFinder matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

11. spacer 1.1|218439|21|NZ_LT618783|CRISPRCasFinder matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

12. spacer 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KX620751 (Propionibacterium phage Doucette, complete genome) position: , mismatch: 1, identity: 0.975

cgtgggagcaggtcatgggtcgggtgatcacatgatgccg	CRISPR spacer
cgtgggagcaggtcatgggtcgggtgatcgcatgatgccg	Protospacer
*****************************.**********

13. spacer 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 1, identity: 0.975

cgtgggagcaggtcatgggtcgggtgatcacatgatgccg	CRISPR spacer
cgtgggagcaggtcatgggtcgggtgatcgcatgatgccg	Protospacer
*****************************.**********

14. spacer 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 1, identity: 0.975

cgtgggagcaggtcatgggtcgggtgatcacatgatgccg	CRISPR spacer
cgtgggagcaggtcatgggtcgggtgatcgcatgatgccg	Protospacer
*****************************.**********

15. spacer 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 1, identity: 0.971

gcaatcgagaacgcccccaccagcgccgagatcgc	CRISPR spacer
gcaatcgagaaggcccccaccagcgccgagatcgc	Protospacer
*********** ***********************

16. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aaaccggcggccaagaagcctgca	Protospacer
**.***************** ***

17. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

18. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

19. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to MH444512 (Bifidobacterium phage Willi, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

20. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to MK932884 (Bifidobacterium phage PMBT6, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

21. spacer 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 2, identity: 0.95

cgtgggagcaggtcatgggtcgggtgatcacatgatgccg	CRISPR spacer
cgtgggagcaggtcatgggccgggtgatcgcatgatgccg	Protospacer
*******************.*********.**********

22. spacer 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 2, identity: 0.943

gcaatcgagaacgcccccaccagcgccgagatcgc	CRISPR spacer
gcaatcgagaacgcccccaccagcgccgagacagc	Protospacer
*******************************. **

23. spacer 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041891 (Propionibacterium phage B22, complete genome) position: , mismatch: 2, identity: 0.947

gcaaaacgaccaaaagagacaagccctgagtaagcaaa	CRISPR spacer
gcaaaacgaccaaaagagacaagctctgagcaagcaaa	Protospacer
************************.*****.*******

24. spacer 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 2, identity: 0.947

gcaaaacgaccaaaagagacaagccctgagtaagcaaa	CRISPR spacer
gcaaaacgaccaaaagagacaagctctgagcaagcaaa	Protospacer
************************.*****.*******

25. spacer 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 2, identity: 0.947

gcaaaacgaccaaaagagacaagccctgagtaagcaaa	CRISPR spacer
gcaaaacgaccaaaagagacaagctctgagcaagcaaa	Protospacer
************************.*****.*******

26. spacer 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 2, identity: 0.947

gcaaaacgaccaaaagagacaagccctgagtaagcaaa	CRISPR spacer
gcaaaacgaccaaaagagacaagctctgagcaagcaaa	Protospacer
************************.*****.*******

27. spacer 2.26|2043931|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 2, identity: 0.947

gcaaaacgaccaaaagagacaagccctgagtaagcaaa	CRISPR spacer
gcaaaacgaccaaaagagacaagctctgagcaagcaaa	Protospacer
************************.*****.*******

28. spacer 2.35|2044584|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041890 (Propionibacterium phage Anatole, complete genome) position: , mismatch: 2, identity: 0.949

ccatcctggaagaactcgatgtcgtcatccttgtcggac	CRISPR spacer
ccatcctggaagaattcgatgtcgtcgtccttgtcggac	Protospacer
**************.***********.************

29. spacer 2.35|2044584|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KX620752 (Propionibacterium phage E1, complete genome) position: , mismatch: 2, identity: 0.949

ccatcctggaagaactcgatgtcgtcatccttgtcggac	CRISPR spacer
ccatcctggaagaattcgatgtcgtcgtccttgtcggac	Protospacer
**************.***********.************

30. spacer 2.35|2044584|39|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_041892 (Propionibacterium phage B3, complete genome) position: , mismatch: 2, identity: 0.949

ccatcctggaagaactcgatgtcgtcatccttgtcggac	CRISPR spacer
ccatcctggaagaattcgatgtcgtcgtccttgtcggac	Protospacer
**************.***********.************

31. spacer 4.1|2050938|34|NZ_LT618783|PILER-CR matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 2, identity: 0.941

aggcttcaggtccggcctcggcccacaggatcgg	CRISPR spacer
aggcttccgggccggcctcggcccacaggatcgg	Protospacer
******* ** ***********************

32. spacer 4.9|2050937|34|NZ_LT618783|CRISPRCasFinder,CRT matches to NC_041894 (Propionibacterium phage E6, complete genome) position: , mismatch: 2, identity: 0.941

aggcttcaggtccggcctcggcccacaggatcgg	CRISPR spacer
aggcttccgggccggcctcggcccacaggatcgg	Protospacer
******* ** ***********************

33. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggcaaataagccggcg	Protospacer
*********** ** ********.

34. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_AP014707 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcgaccgagaagccggcg	Protospacer
*********.**.**********.

35. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aaggcggcgaccaagaagccggcc	Protospacer
*** *****.************* 

36. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccagcggtcaagaagccggcg	Protospacer
*****.****.************.

37. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagcccgcagccaagaagccggct	Protospacer
***** **.************** 

38. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagaccgcggccaagaagccggcc	Protospacer
*** * ***************** 

39. spacer 1.3|218532|24|NZ_LT618783|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 3, identity: 0.875

acggcgtccacggccaagccggca	CRISPR spacer
tcggcgtcgacggcgaagccggca	Protospacer
 ******* ***** *********

40. spacer 2.14|2043059|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 3, identity: 0.921

tcacgctcgcgcccggtacgggcgacgggattctcacc	CRISPR spacer
ttacgctcgcgcccggtacgggcgacgggattctgacg	Protospacer
*.******************************** ** 

41. spacer 2.14|2043059|38|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 3, identity: 0.921

tcacgctcgcgcccggtacgggcgacgggattctcacc	CRISPR spacer
ttacgctcgcgcccggtacgggcgacgggattctgacg	Protospacer
*.******************************** ** 

42. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gattcggcggccaagaagccggcc	Protospacer
.* .******************* 

43. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gagccgccggccaagaagccggtt	Protospacer
.***** ***************. 

44. spacer 1.2|218484|24|NZ_LT618783|CRISPRCasFinder matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
aagccggctgccaagaagccgctg	Protospacer
******** ************ ..

45. spacer 4.3|2051082|35|NZ_LT618783|PILER-CR matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 4, identity: 0.886

cctgcaccgccgctcacctcacgccatttcgacag	CRISPR spacer
ccgacgccgccgctcacctcgcgccatttcgacag	Protospacer
** .*.**************.**************

46. spacer 4.3|2051082|35|NZ_LT618783|PILER-CR matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 4, identity: 0.886

cctgcaccgccgctcacctcacgccatttcgacag	CRISPR spacer
ccgacgccgccgctcacctcgcgccatttcgacag	Protospacer
** .*.**************.**************

47. spacer 4.18|2051080|35|NZ_LT618783|CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 4, identity: 0.886

cctgcaccgccgctcacctcacgccatttcgacag	CRISPR spacer
ccgacgccgccgctcacctcgcgccatttcgacag	Protospacer
** .*.**************.**************

48. spacer 4.18|2051080|35|NZ_LT618783|CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 4, identity: 0.886

cctgcaccgccgctcacctcacgccatttcgacag	CRISPR spacer
ccgacgccgccgctcacctcgcgccatttcgacag	Protospacer
** .*.**************.**************

49. spacer 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 5, identity: 0.875

cgtgggagcaggtcatgggtcgggtgatcacatgatgccg	CRISPR spacer
cgtgggagcaggtcgtgggtcgggtgatcgcatgagcgcg	Protospacer
**************.**************.*****   **

50. spacer 2.16|2043204|40|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 5, identity: 0.875

cgtgggagcaggtcatgggtcgggtgatcacatgatgccg	CRISPR spacer
cgtgggagcaggtcgtgggtcgggtgatcgcatgagcgcg	Protospacer
**************.**************.*****   **

51. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027859 (Streptomyces clavuligerus strain ATCC 27064 plasmid pCLA1, complete sequence) position: , mismatch: 6, identity: 0.829

agccggtccacgccgtcggcggccatgccggtggt-	CRISPR spacer
agccggtccacgcggtcggcagcca-gcaggggctt	Protospacer
************* ******.**** ** ** * * 

52. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032054 (Streptomyces clavuligerus strain F1D-5 plasmid pSCL1, complete sequence) position: , mismatch: 6, identity: 0.829

agccggtccacgccgtcggcggccatgccggtggt-	CRISPR spacer
agccggtccacgcggtcggcagcca-gcaggggctt	Protospacer
************* ******.**** ** ** * * 

53. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016560 (Streptomyces clavuligerus strain F613-1 plasmid pSCL4, complete sequence) position: , mismatch: 6, identity: 0.829

agccggtccacgccgtcggcggccatgccggtggt-	CRISPR spacer
agccggtccacgcggtcggcagcca-gcaggggctt	Protospacer
************* ******.**** ** ** * * 

54. spacer 2.11|2042841|34|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.794

ttgtcggcttccacggtggagacggactgcacag--	CRISPR spacer
gtggcggcttccacggtggaggcggg--gcagagct	Protospacer
 ** *****************.***.  *** **  

55. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to MN234174 (Mycobacterium phage Efra2, complete genome) position: , mismatch: 8, identity: 0.771

agccggtccacgccgtcggcggccatgccggtggt	CRISPR spacer
aggtcgagcacgccgtcggcggccgtgccggtgac	Protospacer
** . *  ****************.********..

56. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to MN234201 (Mycobacterium phage Guanica15, complete genome) position: , mismatch: 8, identity: 0.771

agccggtccacgccgtcggcggccatgccggtggt	CRISPR spacer
aggtcgagcacgccgtcggcggccgtgccggtgac	Protospacer
** . *  ****************.********..

57. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.771

agccggtc--cacgccgtcggcggccatgccggtggt	CRISPR spacer
--gcgatcgtcacgccggcggcggccatgtcggtgaa	Protospacer
   **.**  ******* ***********.*****. 

58. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.771

agccggtc--cacgccgtcggcggccatgccggtggt	CRISPR spacer
--gcgatcgtcacgccggcggcggccatgtcggtgaa	Protospacer
   **.**  ******* ***********.*****. 

59. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.771

agccggtc--cacgccgtcggcggccatgccggtggt	CRISPR spacer
--gcgatcgtcacgccggcggcggccatgtcggtgaa	Protospacer
   **.**  ******* ***********.*****. 

60. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.771

agccggtccacgccgtcggcggccatgccggtggt-	CRISPR spacer
cgccggtcctggccgtcggcggccat-ctgaagatg	Protospacer
 ********  *************** *.*. *.* 

61. spacer 2.24|2043783|37|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to KU984979 (Propionibacterium phage PFR1, complete genome) position: , mismatch: 9, identity: 0.757

agcggcgatctgagcggcgtcccaagcagcgccataa	CRISPR spacer
gatggcgttctgagcggcgtaccaagcagcgagctga	Protospacer
...**** ************ **********   *.*

62. spacer 2.24|2043783|37|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_031108 (Propionibacterium phage PFR2, complete genome) position: , mismatch: 9, identity: 0.757

agcggcgatctgagcggcgtcccaagcagcgccataa	CRISPR spacer
gatggcgttctgagcggcgtaccaagcagcgagctga	Protospacer
...**** ************ **********   *.*

63. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to MN234165 (Mycobacterium phage Yunkel11, complete genome) position: , mismatch: 9, identity: 0.743

agccggtccacgccgtcggcggccatgccggtggt	CRISPR spacer
aggtcgagcacgccgtcggcagccgtgccggtgac	Protospacer
** . *  ************.***.********..

64. spacer 2.36|2044659|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NC_047804 (Ralstonia phage RS-PII-1, complete genome) position: , mismatch: 9, identity: 0.743

agccggtccacgccgtcggcggccatgccggtggt	CRISPR spacer
atggcgtccagaccgtcggcggccatgccgctcat	Protospacer
*    ***** .****************** * .*

65. spacer 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 10, identity: 0.714

gcaatcgagaacgcccccaccagcgccgagatcgc	CRISPR spacer
aagggctacgacgccgccaccagcgccgaaatcgc	Protospacer
. .. * * .***** *************.*****

66. spacer 2.19|2043427|35|NZ_LT618783|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 10, identity: 0.714

gcaatcgagaacgcccccaccagcgccgagatcgc	CRISPR spacer
aagggctacgacgccgccaccagcgccgaaatcgc	Protospacer
. .. * * .***** *************.*****

67. spacer 5.1|2366938|34|NZ_LT618783|CRISPRCasFinder matches to CP000663 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA02, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

68. spacer 5.1|2366938|34|NZ_LT618783|CRISPRCasFinder matches to NZ_CP031752 (Rhodobacter sphaeroides strain EBL0706 plasmid p.A, complete sequence) position: , mismatch: 10, identity: 0.706

tcaaggagcggcgtggagcccgccttcgctccag	CRISPR spacer
ctcgaaaccggggtggagccggccttcgctccgg	Protospacer
.. ...* *** ******** ***********.*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 13249 : 81437 60 Mycobacterium_phage(40.0%) transposase NA
DBSCAN-SWA_2 1480346 : 1548338 59 Streptococcus_phage(21.43%) integrase,protease,capsid,tRNA attL 1475824:1475845|attR 1555634:1555655
DBSCAN-SWA_3 2030759 : 2184723 108 Mycobacterium_phage(16.0%) protease,transposase,tRNA NA
DBSCAN-SWA_4 2269482 : 2335341 47 Staphylococcus_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_5 2408251 : 2480523 55 Mycobacterium_phage(27.27%) transposase NA
DBSCAN-SWA_6 2506464 : 2556148 33 Mycobacterium_phage(22.22%) transposase NA
DBSCAN-SWA_7 2603615 : 2627042 22 Mycobacterium_phage(28.57%) integrase,transposase attL 2608521:2608538|attR 2611535:2611552
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_LT618784
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage