CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_LT703508	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 4	0 crisprs	NA	0	0
NZ_LT703509	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 5	0 crisprs	NA	0	0
NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	2 crisprs	csa3,RT,c2c10_CAS-V-U3,c2c9_V-U4,Cas9_archaeal	3	1
NZ_LT703505	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera chromosome 1	5 crisprs	DEDDh,cas3,csa3,RT,DinG,cas4,WYL,c2c9_V-U4	0	6
NZ_LT703510	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 6	0 crisprs	csa3,RT	0	0
NZ_LT703507	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 3	0 crisprs	c2c9_V-U4	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT703505_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT703505_1

513643-513731

Orphan

Consensus_repeat	Method
CCCTGGGGACCCGGCCCCGGCGG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LT703505_1

>merge|NZ_LT703505|1|513643-513731|CRISPRCasFinder
CCCTGGGGGCCCGGCCCCGGCGGCCCCGGTTTGATCGTTCCGATGCCCCCGGGCGGCCCGGGCGGGCCCGGCGGTCCCGTCTCCGGCCC

>NZ_LT703505|1|1|513643-513731|CRISPRCasFinder
CCCTGGGGGCCCGGCCCCGGCGG	CCCCGGTTTGATCGTTCCGATGCCCCCGGGCGGCCCGGGCGGG
CCCGGCGGTCCCGTCTCCGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT703505.1\|WP_042910505.1\|510421_511480_+\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_LT703505.1\|WP_042910510.1\|517330_518041_+\|ergothioneine-biosynthesis-protein-EgtC	unknown	unknown	gnl\|CDD\|132483
NZ_LT703505.1\|WP_172417484.1\|522425_523982_+\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_LT703505.1\|WP_020821423.1\|514719_516021_+\|ergothioneine-biosynthesis-glutamate--cysteine-ligase-EgtA	unknown	unknown	gnl\|CDD\|274583
NZ_LT703505.1\|WP_008263246.1\|502848_503460_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_LT703505.1\|WP_008263260.1\|509155_510421_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_LT703505.1\|WP_020821414.1\|503466_503889_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703505.1\|WP_042910501.1\|504601_505831_-\|Mur-ligase-family-protein	unknown	unknown	gnl\|CDD\|223840
NZ_LT703505.1\|WP_042910502.1\|505941_506934_+\|DEDDh-family-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|180377
NZ_LT703505.1\|WP_161807779.1\|511617_512619_+\|DUF4185-domain-containing-protein	unknown	unknown	gnl\|CDD\|379383
NZ_LT703505.1\|WP_042910516.1\|524014_524734_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_LT703505.1\|WP_042910500.1\|503901_504609_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_LT703505.1\|WP_042910509.1\|516017_517331_+\|ergothioneine-biosynthesis-protein-EgtB	unknown	unknown	gnl\|CDD\|274581
NZ_LT703505.1\|WP_072501477.1\|506950_508870_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NZ_LT703505.1\|WP_042910512.1\|519002_520160_+\|ergothioneine-biosynthesis-PLP-dependent-enzyme-EgtE	unknown	unknown	gnl\|CDD\|275139
NZ_LT703505.1\|WP_042910508.1\|513883_514540_+\|sensor-domain-containing-protein	unknown	unknown	gnl\|CDD\|372884
NZ_LT703505.1\|WP_042910514.1\|520847_522320_-\|glutamate--cysteine-ligase	unknown	unknown	unknown
NZ_LT703505.1\|WP_008263265.1\|512740_513166_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368014
NZ_LT703505.1\|WP_042910511.1\|518040_519006_+\|L-histidine-N(alpha)-methyltransferase	unknown	unknown	gnl\|CDD\|226751
NZ_LT703505.1\|WP_042910513.1\|520156_520837_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312

Protein	Function_ID	Function_description	E-value
NZ_LT703505.1\|WP_042910505.1\|510421_511480_+\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_LT703505.1\|WP_042910510.1\|517330_518041_+\|ergothioneine-biosynthesis-protein-EgtC	gnl\|CDD\|132483	TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC. Members of this strictly bacterial protein family show similarity to class II glutamine amidotransferases (see pfam00310). They are distinguished by appearing in a genome context with, and usually adjacent to or between, members of families TIGR03438 (an uncharacterized methyltransferase) and TIGR03440 (an uncharacterized protein). [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	1.45493e-109
NZ_LT703505.1\|WP_042910513.1\|520156_520837_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.24924e-19
NZ_LT703505.1\|WP_008263246.1\|502848_503460_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	8.42319e-112
NZ_LT703505.1\|WP_008263260.1\|509155_510421_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_LT703505.1\|WP_020821423.1\|514719_516021_+\|ergothioneine-biosynthesis-glutamate--cysteine-ligase-EgtA	gnl\|CDD\|274583	TIGR03444, EgtA_Cys_ligase, ergothioneine biosynthesis glutamate--cysteine ligase EgtA. Members of this bacterial protein family, EgtA, resemble the glutamate--cysteine ligase of the two-step pathway for glutathione (GSH) biosynthesis, but instead are involved in the biosynthesis of the histidine-derived thiol, ergothioneine (EGT). Successful in vitro reconstitution of EGT biosynthesis using EgtBCDE and gamma-L-glutamyl-L-cysteine suggests that this enzyme is a bone fide glutamate--cysteine ligase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	1.99075e-164
NZ_LT703505.1\|WP_042910501.1\|504601_505831_-\|Mur-ligase-family-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	9.11159e-80
NZ_LT703505.1\|WP_042910502.1\|505941_506934_+\|DEDDh-family-exonuclease	gnl\|CDD\|180377	PRK06063, PRK06063, DEDDh family exonuclease.	0
NZ_LT703505.1\|WP_161807779.1\|511617_512619_+\|DUF4185-domain-containing-protein	gnl\|CDD\|379383	pfam13810, DUF4185, Domain of unknown function (DUF4185).	2.0628e-55
NZ_LT703505.1\|WP_042910516.1\|524014_524734_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.02272e-23
NZ_LT703505.1\|WP_042910500.1\|503901_504609_-\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	9.4925e-115
NZ_LT703505.1\|WP_042910509.1\|516017_517331_+\|ergothioneine-biosynthesis-protein-EgtB	gnl\|CDD\|274581	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB. Members of this family include EgtB, and enzyme of the ergothioneine biosynthesis, as found in numerous Actinobacteria. Characterized homologs to this family include a formylglycine-generating enzyme that serves as a maturase for an aerobic sulfatase (cf. the radical SAM enzymes that serve as anaerobic sulfatase maturases). [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	7.71579e-154
NZ_LT703505.1\|WP_072501477.1\|506950_508870_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NZ_LT703505.1\|WP_042910512.1\|519002_520160_+\|ergothioneine-biosynthesis-PLP-dependent-enzyme-EgtE	gnl\|CDD\|275139	TIGR04343, pyridoxal-phosphate-dependent_transferase, ergothioneine biosynthesis PLP-dependent enzyme EgtE. Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	7.90528e-170
NZ_LT703505.1\|WP_042910508.1\|513883_514540_+\|sensor-domain-containing-protein	gnl\|CDD\|372884	pfam14032, PknH_C, PknH-like extracellular domain. This domain is functionally uncharacterized. It is found as the periplasmic domain of the bacterial protein kinase PknH. The domain is also found in isolation in numerous proteins, for example the lipoproteins lpqQ, lprH, lppH and lpqA from M. tuberculosis. This family of proteins is found in bacteria. Proteins in this family are typically between 214 and 268 amino acids in length. There are two completely conserved C residues that are likely to form a disulphide bond. A second pair of cysteines are less well conserved probably form a second disulphide bond. It seems likely that this domain functions to bind some as yet unknown ligand.	2.33066e-36
NZ_LT703505.1\|WP_008263265.1\|512740_513166_+\|hypothetical-protein	gnl\|CDD\|368014	pfam04592, SelP_N, Selenoprotein P, N terminal region. SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma. It is thought to be glycosylated. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage. The promoter structure of bovine SelP suggest that it may be involved in countering heavy metal intoxication, and may also have a developmental function. The N-terminal region of SelP can exist independently of the C terminal region. Zebrafish selenoprotein Pb lacks the C terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported. N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N terminal region may adopt a thioredoxin fold and catalyze redox reactions. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP. The function of the bacterial members of this family is uncharacterized.	1.36838e-05
NZ_LT703505.1\|WP_042910511.1\|518040_519006_+\|L-histidine-N(alpha)-methyltransferase	gnl\|CDD\|226751	COG4301, COG4301, Uncharacterized conserved protein [Function unknown].	6.72733e-161
NZ_LT703505.1\|WP_172417484.1\|522425_523982_+\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0

>NZ_LT703505.1|WP_008263265.1|512740_513166_+|hypothetical-protein
MRTSTATAPAAAAAAYRAPRVFQLAAWVAIVAGIVFIVAVIFFTGFILGHRGGHHGHHHHKHHHHAMLHHRGPGGPGGPGGGTQGGPGAPTGPGATTAPASPSPVRPSGMAPGQLPASIFHSAAASHAAPGQAPSVIVLTN
>NZ_LT703505.1|WP_161807779.1|511617_512619_+|DUF4185-domain-containing-protein
MLRIGPTAGTGTPTGDYGIGATDLCEFVEFPTELLQVCGDSFAGQGVGFGGWYAPVALHVDTASVDDPAGVRYTGVTGIAHPLLADPAPPDSSQLPAGVVQVNRRNYLMVTTTKDLEPQSSRLVTAEPARAGWQTIPGSKRPASYQGGSQTQISGYYDPIPTPESPSGWVYIVADSFTRRDPVVLYRATPQTFTDRSRWQGWAAGASGGWGKPPTPLWPDAVGEMCIRQIDGKAVLSYFNAATGNMEVRVAADPTALGDAPVTTVVQHDEWPEPAESLPPPYDNRLAQPYGGYISPGSTLDELRIFVSQWDTRARVAAPYRVIQFAVNPFKPE
>NZ_LT703505.1|WP_042910505.1|510421_511480_+|aspartate-semialdehyde-dehydrogenase
MVAIGVVGATGQVGQVMRRLLDERDFPALNSGGSVRFFASARSQGRKLEFRGQEIEVEDAATADPSGLDIALFSAGKTMSLVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFTRDVANRARSLKKGIIANPNCTTMAAMPVLKVLHDEAGLQRLVVSSYQAVSGSGIAGVQELSTQARAVVDDAEQLVQDGGAVQFPAPKTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRHESRKILGIPDLAVSGTCVRVPVFTGHSLSINAEFARPLSPQRARELLDGAPGVKVVDVPTPLAAAGVDESLVGRIRQDPGVPDGRGLALFVSGDNLRKGAALNTIQIAELLAAEL
>NZ_LT703505.1|WP_008263260.1|509155_510421_+|aspartate-kinase
MALVVQKYGGSSVANADRIRRVAERIVATKKQGNDVVVVVSAMGDTTDDLMDLAQQVCPAPPPRELDMLLTAGERISNALVAMAIESLGAQARSFTGSQAGVITTGTHGNAKIIDVTPGRLQAALDEGRVVLVAGFQGVSQDTRDVTTLGRGGSDTTAVALAAALRADVCEIYTDVDGIFSADPRIVHNARKLDTVTFEEMLEMAACGAKVLMLRCVEYARRYNIPVHVRSSYSENPGTVVVGSIKDIAMEDPILTGVAHDRSEAKVTVVGIPDIPGYAARVFRALADADVNIDMVLQNVSKVEDGKTDITFTCSRDSGPTAVAKLDALKDEIGFSQLLYDDHVGKVSLIGAGMRSHPGVTATFCESLAEVGVNIELISTSEIRISVLCRDTELDKAVVALHEAFGLGGEESATVYAGTGR
>NZ_LT703505.1|WP_072501477.1|506950_508870_-|2-isopropylmalate-synthase
MTVTSNSDAFSSTRSIVKPAGPRGPGQPAWNPQRGSSMPVSRYRPFAEEVEPIRLADRTWPDRVITSAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQTDFDFVREIITGGAIPDDVTIQVLTQCRPELIERTFEACLGAPQAIVHFYNSTSILQRRVVFRAEKAAVQDIATAGARKCVEEAAKYPGTRWRFEYSPESYTGTELEYAKQVCDAVGEIISPTPENPIIFNLPATVEMATPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGYQAGADRIEGCLFGNGERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLDQMKVDADAADTDVEDMLWQVPYLPIDPKDVGRTYEAVIRVNSQSGKGGVAYIMKSDHGLALPRRLQIEFSQVVQKISEGEGGEVSPKEMWDAFSEEYLAPVWPLERVKQRVDASEEDSGVTSIAATVRINGVETEISGSGNGPLAAFVHALGDVGFDVAVLDYSEHAMSSGDDAQAAAYVEASVSIASAAEPGEAGLHPSGPVSIASAAEPGEAGRHPSGPVNGRTVWGVGIAPSITTASLRAVVSAVNRAARA
>NZ_LT703505.1|WP_042910502.1|505941_506934_+|DEDDh-family-exonuclease
MSAVCWGRPASEPDAGWAVIDVETSGFRPGQARIISLAVLGLDADGEVEQSVVSLLNPGVDPGPTHVHGLTAAMLEDQPQFADIASDVIDVLRGRTLVAHNVAFDYAFLAAEAELADIELPVDSVMCTVELARRLDLGVDNLRLETLAAHWSVTQERPHDAFDDAMVLTGVLASALKLARDGDVWLPVHPVTRRRWPNGRVTHDELRPLKVLASRMPCPYLNPGPYVGGRPLVQGMRVALAAEVGRTHEELVERILHAGLAYSEAVDRETSLVVCNDPAPEQGKGYLARKLGVPVISDATFMDCVRAVIGGTSMDEFTDTTNSDPQLALF
>NZ_LT703505.1|WP_042910501.1|504601_505831_-|Mur-ligase-family-protein
MVTTRARLALAAGASARWASRVTGRGAGAMIGGLIAMTLDRSVLRQLAAGRRTVVVTGTNGKSTTTRMTSAALATLGPVATNAEGANMDAGLVAALAANRRASLAALEVDEMHVPHVSDAVEPSVVVLLNLSRDQLDRVGEINVIERTLRAGLARHPNAVVVANCDDVLMTSAAYDSPNVVWVAAGGSWSNDSVSCPRSGEVIVRERGHWFSTGADFKRPSPQWWFDDRTLHGPDGLSLPMRLTLPGAVNRGNAAQAVAAAVALGADPAKAVAAVSAVDEVAGRYRTVRVGDHEVRMLLAKNPAGWQEALSMVDKRAAGVVISVNGQVPDGEDLSWLWDVRFEHFEQTEVVAAGERGTDLAVRLGYAGVEHTLVHDTVAAIASCPPGRVEVVANYTAFLQLQRALARRG
>NZ_LT703505.1|WP_042910500.1|503901_504609_-|glutamine-amidotransferase
MADSTVRIGLVLPDVMGTYGDGGNALVLRQRLLLRGIPAEIVEITLADPVPESLDLYTLGGAEDYAQRLATRHLVKHPGLQRAAQRGAPVLAICAAVQVLGHWYETSAGQRVDGVGMLDATTSPQAARTIGELATRPLLAGLTERLTGFENHRGGTVLGPSASPLGAVVKGAGNRSGDGFDGVVQGSVIATYMHGPCLARNPQLADLLLGSVVGELPPLPMPEVDLLRRERLAAR
>NZ_LT703505.1|WP_020821414.1|503466_503889_-|hypothetical-protein
MMKIRPRLAAGAALVAAFVASSAPSHASPEVLNGRYNVLYADNDKPTAWLFVPCGSDCTLATSQDGGTFVISWEFHLADGRWTHSGTSQAPCPNGASAPVTVNYSFDAVSLAGEGQQTTTDACGPEAGRTFTRSFQLSKA
>NZ_LT703505.1|WP_008263246.1|502848_503460_+|recombination-protein-RecR
MFEGPVQDLIDELGKLPGIGPKSAQRIAFHLLSVEPPDIDRLTAVLAKVRDGVRFCAVCGNVSDNERCRICADPRRDGSQVCVVEEPKDVQAVERTREFRGRYHVLGGALDPLSGVGPDQLRIRELLSRIGERVDDVDITEVIIATDPNTEGEATATYLVRMLRDIPGLTVTRIASGLPMGGDLEFADELTLGRALAGRRAMV
>NZ_LT703505.1|WP_042910508.1|513883_514540_+|sensor-domain-containing-protein
MTMRATHRAVLTVGFAVAGIVAPAVAAAHPSEPGVVNYAVLGKGSVGNIVGGPMGWESVFTQPGQGPWVDLPECNNWADIGLSEVYDDPDLASFNGAVTQTSANDQTHLVKQAVGVFATPDAAARAFHRVVDRTVGCSGQTTAIHLDNGSTQVWSFDGGPAGPADENWTKQEAGTDRRCFDQTRLRENVLLQAKVCQSGNAGPAVNVLAGAMQNALGQ
>NZ_LT703505.1|WP_020821423.1|514719_516021_+|ergothioneine-biosynthesis-glutamate--cysteine-ligase-EgtA
MTFAPITAAAPRSTGADPAPELKIAELTDSTAVAQYIADGCLVDAPLGRVGLELEAHCHDPAAPHRRPGWDEIAAVLDGLPALPGGSRITVEPGGAVELSGPPADGVLPAIEAMRRDQAVLQPAFAEAGLGLVFLGADPLRPPQRINPGARYRAMEKFFATSRSGEAGAAMMTSTASIQVNVDAGPREGWAARVRLAHALGPTMIAITANSPMLGGDFTGWVSSRQRVWGQMDSARCGPILGASGDDPGTDWGRYALKAPVMLVHTPGAEAVTQWVPFADWVDGRVLLGDRRPSVADLEYHLTTLFPPVRPRQWLEIRYLDSVPDALWPAVVFTLVALLDDPTAADAAAEAVAPVATAWDIAARLGLRDRRLYAAANACVAIAAERAPAELGDAMQRLVGLVEQGRCPGDDFADRVIEHGVAAEVSRAARGGL
>NZ_LT703505.1|WP_042910509.1|516017_517331_+|ergothioneine-biosynthesis-protein-EgtB
MTVTSCRETLADQLTRTRARTLRLVDFDDAELCRQYDPLMSPLVWDLAHIGQQEELWLLRGGDPGRPSMLSPAVEGLYDAFVHSRASRVDLPLLSPDEARAYCRTVRSAVFDALDALPDDPPGDEAAFAYAMVVSHENQHDETMLQALNLRSGPPLLCGTSMLPPARPGLAGTSVLVPGGEFVLGVDPATEPFSLDNERPGHVVDLPAFRIGRVPVTNGEWRHFIDDGGYDQPRWWSERGWRHRQAAGLTAPQFWNPDAATRTRFGHVEDIPADEPVQHVSYFEAEAYAAWAGARLPTEMEWEKACAWDPSAGARRRYPWGAQEPCEALANLGGAALRPAPVGAYPAGASAYGAEQMLGDVWEWTSSPLRPWPGFVPMLYERYSQPFFDGDYRVLRGGSWAVEPGILRPSFRNWDHPYRRQIFSGVRLAWDVPKEIA
>NZ_LT703505.1|WP_042910510.1|517330_518041_+|ergothioneine-biosynthesis-protein-EgtC
MCRHLGWLGADVTVSSLVLDPPFGLRVQAYAPRRQKHCLLNADGWGVGFFDAASDGAAPRRWRSQLPLWGDVSFESVAPALRSHCVVAAVRSATVGMPIEVSATAPFTDGQWLLSHNGIVDRAVLPATSQAESVCDSAMLAAVIFERGLDALGDTIAEIAAADPRARLNILAANGSRMLATAWGDTLSILRRPDGVVLASEPYDNDSDWEDVPDRHLVEVTAGEVTMTPLDHPKGP
>NZ_LT703505.1|WP_042910511.1|518040_519006_+|L-histidine-N(alpha)-methyltransferase
MTLSLSNHLAADSAYHALRRDVFEGLQKTPKSLPPKWFYDAVGSDLFDQITRLPEYYPTRAEAEILRARAAEIASASEADTLVELGSGTSEKTRLLLDALRTRGSLRRFVPFDVDASILSTAAAAIAQEYSGVEIKAVCGDFEEHLTEIPADGRRLFVFLGSTIGNLTPGPRADFLAALSAQMRPGDSLLLGTDLVKDLERLVRAYDDSAGVTAAFNRNVLAVVNRELDADFDVDAFAHVARWNPAEERIEMWLRADRGQRVRVGALELIVDFEAGEEMLTEVSCKFRPEKVSAELAAVGLRRTQWWTDGAGDFGLSLAVK
>NZ_LT703505.1|WP_042910512.1|519002_520160_+|ergothioneine-biosynthesis-PLP-dependent-enzyme-EgtE
MTAGDSLADRWRAARPPMAGLHLDNAACSRQSVAVIDAAAQHARNESEVGGYVAAEAAAPVLDAGRVAFAALTGMTDAEVVFTTGSLHALDLLLGAWPTKHRTVACLPGEYGPNLAVMAAHGFDRRLLPTMDDGRVALDDAARALDTDRPDLVHLTAVASHSGVVQPVSMIAQLCRELGLPLVVDAAQALGQVDCAAGADATYSSSRKWIAGPRGVGMLAVRRELMESLRPRLAAPQWARASGSPTVAQQLEFGEANVAARVGFSLALGEHLAYGPAAVRARLAALGGLNRTVLADVAGWAVVEEVEEPSAITTLAPTDGADPQAVRDWLLAERRILTTFVGVQRAPLELPGPLLRISPHLDTTAEDLETFAEALIAATAATATG
>NZ_LT703505.1|WP_042910513.1|520156_520837_-|class-I-SAM-dependent-methyltransferase
MSSDQVMDWDSAYREQAHFEGPPPWNIGEPQPELAALVAAGKFRSDVLDAGCGVAELSLSLAAQGYTVVGVDLTPTAVAAATKSAQERGLTTASFVQADITSLSGYDGRFATVVDSTLFHSLPVEGRDGYLRSVHRAAAPGASYFVLVFAKGAFPSEMEPKPNEVDEDELRAAVSKYWEIDEIRPSFILSNAVNIADAPFEFPPHDRDEQGRIKMPAYLLTAHKTG
>NZ_LT703505.1|WP_042910514.1|520847_522320_-|glutamate--cysteine-ligase
MGEEVKRTTYDSAHRREYRRKVQSCLNVFETMLAQSCFDSDQPLTGMEIECNLVDADYQPAMSNRHVLDAIGDPAYQTELGAYNIEFNVPPHALPGHTGLDLEAEVRASLNEAEIKAGAADGAHIVMIGILPTLMPEHLDHDWMSESTRYAALNDSIFTARGEDLPIDIDGPEPLNWHAATIAPESACTSMQLHLQLAPETFAANWNAAQIVAGPQLALGANSPFFFSHQLWAETRIELFTQSTDTRPEELKTQGVRPRVWFGEQWITSVLDLYRENIRYFPSLLPEVSEEDPVAELAAGRTPQLSELRLHNGTVYRWNRPVYDVVDGRPHLRLENRVLPAGPTVVDMLANSSFFYGMLRSLSEADSPLWDHLDFAVAEANFLAAARHGIDARLHWPGLGEVSARDLVLDTLLPMADDGLRRWGVDPEVRDRFLGVIEGRARAGRNGATWQVSTVRALQDAGMGRAAALAEMLRRYCEYMHANEPVHTWE
>NZ_LT703505.1|WP_172417484.1|522425_523982_+|glycerol-kinase-GlpK
MSELTGGGEQLAEFAEFVAAIDQGTTSTRCMIFDHEGAEVARHQLEHEQVLPQAGWVEHDPVEIWERTSSVLTSVLNRANLAPKNIAALGITNQRETTLVWNRKTGRPYYNAIVWQDTRTDRIASALEGDGRGEVIRRKAGLPPATYFSGAKLQWILENVDGVRDAAERGDALFGTPDTWVLWNLTGGPRGGVHVTDVTNASRTMLMNLETLDWDDELLSFFAIPRAMLPRIGPSSSPQPYGVTAETGPAGGEIAITGVLGDQHAAMVGQVCLAEGEAKNTYGTGNFLLLNTGETIVRSDNGLLTTVCYQFGDAKPVYALEGSIAVTGAAVQWLRDQLGIISGAAQSEALARQVDDNGGVYFVPAFSGLFAPYWRSDARGAIVGLSRFNTNAHLARATLEAICYQSRDVVDAMAADSGVRLEVLKVDGGITGNDLCMQIQADVLGVDVVRPVVAETTALGAAYAAGLAVGFWAGPADLRANWQEGRRWSPTWNDQQRAEGYAGWRKAVQRTLDWVSIT
>NZ_LT703505.1|WP_042910516.1|524014_524734_-|helix-turn-helix-transcriptional-regulator
MSNPFTPPEGPFGGRPGFGFGFGSGPVDRRALHEARRQARRDFREHLRDHAGGGHPGGYEGPFGFGPGFGPGFGPGFGFGPGGRRGAWRRGGPGRGKRGDVRAAILTLLSERPMHGYEMIQQIAERSNGLWKPSPGSVYPTLQLLDDEGLITASESAGSKKLFELTEQGRGAAEKIETPPWDEITEGADPGHMSLRAAVGQLFGAVGQSAHTASAEQQQRIVDILNNARREIYGILGED

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Crispr_ID: NZ_LT703505_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT703505_2

1705366-1705444

Orphan

Consensus_repeat	Method
TCCGCCGCGGAGGTCCGTGGGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT703505_2

>merge|NZ_LT703505|2|1705366-1705444|CRISPRCasFinder
TCCGCCGCGGAGGTCCGTGGGCGCCGCTGCGCCTCATCGCTTCGCATTGCATCGTCCGCCGCGGAGGTCCGTGGCCGCC

>NZ_LT703505|2|2|1705366-1705444|CRISPRCasFinder
TCCGCCGCGGAGGTCCGTGGGCGCC	GCTGCGCCTCATCGCTTCGCATTGCATCG
TCCGCCGCGGAGGTCCGTGGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT703505.1\|WP_020821957.1\|1707246_1707636_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_LT703505.1\|WP_042911041.1\|1695858_1697010_+\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|223497
NZ_LT703505.1\|WP_008254760.1\|1712044_1712923_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|366009
NZ_LT703505.1\|WP_042911040.1\|1695191_1695695_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|224973
NZ_LT703505.1\|WP_009955270.1\|1705486_1706464_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_LT703505.1\|WP_042911092.1\|1692052_1693819_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LT703505.1\|WP_041320848.1\|1710628_1711114_+\|RrF2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273242
NZ_LT703505.1\|WP_020821960.1\|1711564_1711978_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NZ_LT703505.1\|WP_051197806.1\|1704455_1705364_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_LT703505.1\|WP_042911045.1\|1702623_1704459_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182342
NZ_LT703505.1\|WP_042911042.1\|1697006_1699628_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|227061
NZ_LT703505.1\|WP_042911043.1\|1699723_1700968_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_LT703505.1\|WP_051445846.1\|1700954_1702589_-\|ABC-transporter-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173866
NZ_LT703505.1\|WP_008254752.1\|1708728_1710570_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|180120
NZ_LT703505.1\|WP_020821958.1\|1707799_1708729_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LT703505.1\|WP_008254722.1\|1694000_1694558_+\|DUF3558-domain-containing-protein	unknown	unknown	gnl\|CDD\|378803
NZ_LT703505.1\|WP_020821956.1\|1706676_1707168_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239474
NZ_LT703505.1\|WP_020821961.1\|1712992_1713859_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NZ_LT703505.1\|WP_008254755.1\|1711131_1711521_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319939
NZ_LT703505.1\|WP_020821948.1\|1694566_1695097_+\|DUF3558-domain-containing-protein	unknown	unknown	gnl\|CDD\|378803

Protein	Function_ID	Function_description	E-value
NZ_LT703505.1\|WP_020821957.1\|1707246_1707636_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	1.34296e-30
NZ_LT703505.1\|WP_042911041.1\|1695858_1697010_+\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|223497	COG0420, SbcD, DNA repair exonuclease [DNA replication, recombination, and repair].	6.12647e-63
NZ_LT703505.1\|WP_008254760.1\|1712044_1712923_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|366009	pfam00296, Bac_luciferase, Luciferase-like monooxygenase.	3.86964e-30
NZ_LT703505.1\|WP_042911040.1\|1695191_1695695_-\|histidine-phosphatase-family-protein	gnl\|CDD\|224973	COG2062, SixA, Phosphohistidine phosphatase SixA [Signal transduction mechanisms].	3.15779e-45
NZ_LT703505.1\|WP_009955270.1\|1705486_1706464_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.50326e-99
NZ_LT703505.1\|WP_042911092.1\|1692052_1693819_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.70912e-159
NZ_LT703505.1\|WP_041320848.1\|1710628_1711114_+\|RrF2-family-transcriptional-regulator	gnl\|CDD\|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	1.50922e-49
NZ_LT703505.1\|WP_020821960.1\|1711564_1711978_-\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	3.94653e-12
NZ_LT703505.1\|WP_051197806.1\|1704455_1705364_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.7458e-85
NZ_LT703505.1\|WP_042911045.1\|1702623_1704459_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	7.51722e-170
NZ_LT703505.1\|WP_042911042.1\|1697006_1699628_+\|AAA-family-ATPase	gnl\|CDD\|227061	COG4717, COG4717, Uncharacterized conserved protein [Function unknown].	7.45274e-09
NZ_LT703505.1\|WP_042911043.1\|1699723_1700968_+\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	5.0976e-11
NZ_LT703505.1\|WP_051445846.1\|1700954_1702589_-\|ABC-transporter-family-substrate-binding-protein	gnl\|CDD\|173866	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold. LpqW is one of key players in synthesis and transport of the unique components of the mycobacterial cell wall which is a complex structure rich in two related lipoglycans, the phosphatidylinositol mannosides (PIMs) and lipoarabinomannans (LAMs). Lpqw is a highly conserved lipoprotein that transport intermediates from a pathway for mature PIMs production into a pathway for LAMs biosynthesis, thus controlling the relative abundance of these two essential components of cell wall. LpqW is thought to have been adapted by the cell-wall biosynthesis machinery of mycobacteria and other closely related pathogens, evolving to play an important role in PIMs/LAMs biosynthesis. Most of periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the LpqW protein. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	8.69623e-158
NZ_LT703505.1\|WP_008254752.1\|1708728_1710570_+\|adenylyl-sulfate-kinase	gnl\|CDD\|180120	PRK05506, PRK05506, bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional.	0
NZ_LT703505.1\|WP_020821958.1\|1707799_1708729_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LT703505.1\|WP_008254722.1\|1694000_1694558_+\|DUF3558-domain-containing-protein	gnl\|CDD\|378803	pfam12079, DUF3558, Protein of unknown function (DUF3558). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 177 to 195 amino acids in length.	4.57725e-31
NZ_LT703505.1\|WP_020821956.1\|1706676_1707168_+\|carbonic-anhydrase	gnl\|CDD\|239474	cd03379, beta_CA_cladeD, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.82269e-65
NZ_LT703505.1\|WP_020821961.1\|1712992_1713859_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	0.00297791
NZ_LT703505.1\|WP_008254755.1\|1711131_1711521_-\|VOC-family-protein	gnl\|CDD\|319939	cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha), and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	4.24427e-67
NZ_LT703505.1\|WP_020821948.1\|1694566_1695097_+\|DUF3558-domain-containing-protein	gnl\|CDD\|378803	pfam12079, DUF3558, Protein of unknown function (DUF3558). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 177 to 195 amino acids in length.	3.73752e-31

>NZ_LT703505.1|WP_051197806.1|1704455_1705364_-|ABC-transporter-permease
MDGAHGFSSHDAADFTSRRTLVLRRFARNRFAVASLTLLVLLFVGCYTLPAVLPFSYEDLDFTALLQPPSARHWLGTNALGQDLLAQILRGMQKSMLIGICVAVISTGIAATVGSVSGYFGGWRDRVLMWLVDLLLVVPSFILIAIVTPRTKDSANIVMLVLLLAGFGWMVSSRMVRGMTMSLREREFIRAARYMGVSSRRIIVGHVVPNVASILIIDAALNVASAILAETGLSFLGFGIQPPDVSLGTLIANGTQSATTFPWVFLFPAGVLVLILVCANLTGDGLRDALDPGSTPVRGGAR
>NZ_LT703505.1|WP_042911045.1|1702623_1704459_-|ABC-transporter-ATP-binding-protein
MSPLLEVTDLAVTFATGGDPVTAVRGVSYRVEPGEVVAMVGESGSGKSVSAMAVVGLLPEYARVRGSVRLHDTELLGLDDDAMSRFRGKTVGMVFQDPMSALTPVYTVGDQIAEAIEIHQPRVGRRAARHRAVELLELVGIAQPERRARAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILEVLKTARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAEVHDLYRDRRMPYTVGLLGSVPRLDAAQGSRLVPIPGAPPSLAGLDPGCPFAPRCPLAIDECRLEEPELLPVGADHRAACIRTDQVGGRSAADIYGVSTTAVSARPDGSSVVVRVRDLTKTYRLTKGVLRRRAGEVRAVDGVSFELREGRTLGIVGESGSGKSTTLHEILELTGPQSGSIEVLGTDVTTLSSASRRSLRRDIQVVFQDPVASLDPRLPVFELLAEPLRANGFDKGRTNARVAELLEIVGLRRADAIRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVSIQAGIINLLLDLQALFGLSYLFVSHDLSVIKHLAHEVVVMRSGTVVERGDSRQVFDNPQHEYTRQLLNAVPRPDPGARG
>NZ_LT703505.1|WP_051445846.1|1700954_1702589_-|ABC-transporter-family-substrate-binding-protein
MALALSGCSPAINLIPETGQNARIGTSSDINPRDPATLRDGGDLRLALTAFPPNFNILHIDGNSAEVAAMMKATLPRAFIIGPDGSTTVDTNYFTSIELTGTAPQVVTYTINPKAVWSDGTPITWEDIASQVHALSGADKNFEIAGPSGAERVASVTRGVDDRQAVMTFAKPYAEWRGMFAGNGMLLPKSMTATPEAFNKGQLDGPGPSAGPFIATSLDRTTLRIVLSRNPKWWGPRPRLDNITYLVLDDAARLPALQNNTIDATGVGTIDQLTIAQRTKGITIRRAPAPAWSHITFNGAPGSILADKALRVAVSRGIDRQTIAKVVQYGLTSDPVALGNHIYVAGQKGYQDNSAVVPYDPAAAKRELDALGWKQVGQFREKDGRPLIIRDLFYDAQGSRQFAQIAQHSLAQIGVKLELVARAGSGFFTNYINVGAFDLAQFGWLGDAFPLSSLTQIYKSDGESNFGKIGSPQIDAAIERTLEELDPDRARALANELDRLIWAEGFSLPLTQSPGDVAVRSTLANFGAAGLGDLDYTAIGFTRS
>NZ_LT703505.1|WP_042911043.1|1699723_1700968_+|alpha/beta-hydrolase
MTMNAKRSRVQQKLAELPGVRAVRRPISPHSADEFDLYYVRTGRKSRHPLVIIPGGPGVASVQMYKGLRRRAAAAGLDVIMIEHRGVGMSRHDDSGADLPPQSMTVNQVVDDVAAVLDDAHADSADIYGASYGTYIAAGVGVRHPERVHAMVLDSPLLSRHDIVIVRRAIRRLLLRGDSPETAALAPKMRKLVDAGVMTPAATHVVATIYGYGGADLLERQLDLLLQRRKLLWWTLSRFTTLSNLPFRYEEDLVSRIAFRELDYAAEPDGLPLDPAVAESEARTHRVTFEDEPYDLPTEMPNFNWPTAVISGGRDLITPPAVAERVASLLPDAVLLSLPSMAHSALDFREPVALAAADAVGRGDLKGLAAQASALDALPPRPEVRLLWKLIETAAAAEGALPVPTRLLRRLSCA
>NZ_LT703505.1|WP_042911042.1|1697006_1699628_+|AAA-family-ATPase
MKLHRLILTNYRGISHREIEFPDHGVVVVCGANEIGKSSMIEALDLLLESRDRSTKKEVKQVKPTHSDVGSEVSAEISCGPYRFVYRKRFHKRCETELTIITPCREQLTGDEAHERVRAMLAETVDSDLWHAQRVLQSTSTAAVDLSGCDALSRALDVAAGDSGGLCGTEPLLIERIDTEYARYFTPTGRPTGQWAAAIARLADAEAAVAECAAAVAEVDDRVARHAVLTEQVADFSQRRIAAGPRVAAAREAADRIAELTAQQREAQLVAAAAAATSAAATAAHTGRLQLLAEIDARAGAVAETEAQAHQAACAHASARAEAEACDATLQRATQVLADLQCRVDAARRGVDRLADLEEVDRLSTRLAKVDAIERDRERICAELSTIAVTEELLRRIEDACAAVDRIGDHLASTSAAIEFTAAADIHLVVGGERISLSAGQSWSITAAGSTVVEVSDVLTARVTPGATTLDIHAKHAAAQQEMTAALAAAEVADLAAARSADQRRRELVSTRDQLGATLAGLCGDEQIDEMRSRLARLRAQHPAEPAPGATDIGAARAELDVAQQGHAAASTDCEAHRQAATAAAAALAELSTRATVLQNTLEAQRAELQAAAGRLAAERASVSDEELAASADSALRAEQAADQRVGELAAALAAASPDAVAAELAEATKEAESLRERYEEAARALREITIELSVFGSEGRQGKLDTAETEREHAATEHSQIGARARAAKLLRSVMTRHRDTTRRRYVEPYRAELQRLGRPVFGPSFEVDIDSDLCIRSRTLNGITVPYESLSGGAKEQLGILARLAGAALVAKEDAVPVVVDDALGFTDPDRLAKMGQLFDSVGTHGQVIVLTCSPDRYDGVRGAHRIDLTA
>NZ_LT703505.1|WP_042911041.1|1695858_1697010_+|exonuclease-SbcCD-subunit-D
MRFLHTADWQLGMTRHFLAGDAQPRYSAARRDAVAGLGALAAEVDAEFVVVSGDVFEHNQLPPTVIGQSLEAMRAIGIPVYLLPGNHDPLDASSVYTSALFAAERPDNVVVLDRAGVHQVRPGLEIVAAPWRSKVPTTDLVADVLDGLPAAAGIRILVAHGGVDVLDPDKDKPSLIRLATLDDALSRGAVHYVALGDKHSLTQVGDSGRVWYSGSPEVTNFDDVESDPGHVLVVDVDETDPRGAVSVTARDVGRWRFVTLHRQVDTSRDIADLDVNLDLMTDKDRTVVRLALTGSLTVTDRAALDACLDKYARLFAWLGLWERHTDLAVIPADGEFSDLGIGGFAAAAVEELVATAREEDSATAVDAQAALALLLRLADRGAA
>NZ_LT703505.1|WP_042911040.1|1695191_1695695_-|histidine-phosphatase-family-protein
MTAERTLLLMRHAKSDYPAGVADHDRPLAPRGVRQAGLAGDWLRAHVPPVDRVLCSTATRTRETLRNTRIDAPVRYSERLYASTPGTLIDEINTVDDGIGTLLVIGHEPTMSALALGLGRAGGTDDAAAERISAKFPTSAIAVLAVPCAWKELELGGASLIDFVVPR
>NZ_LT703505.1|WP_020821948.1|1694566_1695097_+|DUF3558-domain-containing-protein
MRAAAVLLLAALLVLTGCSRSIGGNAVKAGGNVPRNNNSQQQYPNLLKECEVLTSDILAKTVGADPLDIQSTFVGAICRWQAANPAGLIDITRFWFEQGSLSNERKVAEFLKYKIESRPIAGIDSIVMRPDDANGACGVASDAAGVVGWWVNPQAPGIDACGQAIKLMELTLATNS
>NZ_LT703505.1|WP_008254722.1|1694000_1694558_+|DUF3558-domain-containing-protein
MRRSARALALVASALTILIPAVAACSDSGGNKPGATASSTPQKGQGNHGPMFPQCGGISDQTVAELTRVTGLINTARNSVGCQWLAGGGILGPHFSFSWYRGSPIGRERKTEELSRASVDDININGHGGFIAVGNEPNLGDSLCEVGIQFQDDFIEWSISFSQKPFPPPCDIAKELARQSIANSK
>NZ_LT703505.1|WP_042911092.1|1692052_1693819_-|ABC-transporter-ATP-binding-protein
MLLALLRQYIQPYRRLVAVLMVLQLISNLASLYLPTVNAAIIDEGVAKGDTAAIVRLGIVMLGATGLQVLCSVGAVYFGSRTGMGFGRDLRAAVFEHVLTFSERESARFGAPTLLTRSTNDVRQIQYLVQITATVLVTAPIMCLGGIVMALRQEAALTWLLLVSVPVMAVTNYWVMSHMLPLFRRMQGLIDGINRVMRDQLAGVRVVRAFAREGFERDRFARANAALSNTALTAGNWQALMLPVTTLTINVSSVALIWFGGLRIDRGQMQVGSLTAFLAYFTQILMAVLMATMTLVVLPRASVCAERITEVLTTRPAVTDPPGPASPPGKITGVVRLDGATFTYPGADRPVLQDISFIARPGTTTAIVGSTGSGKSTLISLICRLYDVTGGTVLVDDIDVRDYHTERLWSAIGLVPQRGYLFSGTIADNLRYGAAPGHDITGDEMWEALRVADADGFVRAHPDGLQMRVAQGGINFSGGQRQRLAIARAVIRRPAVYLFDDSFGALDVHTGARVRAALKPISKEATVIVVTQRVSTAAQADQVIVVDGGRLVGAGTHESLLADSATYAEFADSQAVGALPSGHVGGAQ
>NZ_LT703505.1|WP_009955270.1|1705486_1706464_-|ABC-transporter-permease
MTRFLARRLLNYVVLLALASFLTFCLTSVAFKPLDSLLQRNPRPPQAVIDAKAHALGLDEAIPIRYAHWASHAVRGDFGKTVTGQPVGESLWRRVGVTLRLLVIGSLVGTVAGIAAGAWGAIRQYRLSDRVVTMVALLVLSTPTFVIANLLILAALRVNWAVGLQIFDYTGETSPGVSGGAGAHFFDRLRHLVLPSLTLALAAAAGYSRYQRNAMLDVLGQDFIRTARAKGLTRRRALVKHGLRTALIPLATLFAYGVAGLVTGAVFVEKIFGWHGMGEWLVQGIATQDTNIVAAITVFSGAVVLLAGLLSDVFYAALDPRVRVS
>NZ_LT703505.1|WP_020821956.1|1706676_1707168_+|carbonic-anhydrase
MTVTDDLLANNAEYAKTFNGPLPMPPGKHVAVVACMDARLDVYRLLGLNEGEAHVIRNAGGVVTDDVIRSLAISQRLLGTREIILIHHTDCGMLTFTDDDFKRSIQEETGVKPPWAAEAFPDVAEDVRQSLRRIEGSPFVTKHVSARGFFFDVATGKLNEVTL
>NZ_LT703505.1|WP_020821957.1|1707246_1707636_-|PaaI-family-thioesterase
MIAQFLPQSPFVVKLGIVADRLEEDEVRLRLPWDPSNVTIGDMVHGGAIATLADLTVMAAAWCGVPAPPELRGVTVSMALDYMAPARATDVIGIGRVLRRGRSLVNCEAEIVDSGGTLVAKALATYKVG
>NZ_LT703505.1|WP_020821958.1|1707799_1708729_+|sulfate-adenylyltransferase-subunit-CysD
MTSDLKTAPAVGQYELSHLRSLEAEAIHIIREVAAEFERPVLLFSGGKDSIVMLHLALRAFRPGRLPFPVMHVDTGHNFDEVIATRDELVKEHGVRLVVASVQEDIDAGRVVEPRQGRNPIQTVTLLRAIRENKFDAAFGGARRDEEKARAKERVFSFRDEFGQWDPKAQRPELWNLYNGRHHKGEHIRVFPLSNWTEFDIWSYIGAENIALPSIYYAHRRKVFRRDGMLLAVDKNMQPNADEPVFEATVRFRTVGDVTCTGCVESQAATVEEVIAETAVSRLTERGATRADDRISEAGMEDRKRQGYF
>NZ_LT703505.1|WP_008254752.1|1708728_1710570_+|adenylyl-sulfate-kinase
MATLLRLATAGSVDDGKSTLIGRLLYDSKAVMEDQWAAVEQTSKDRGHDYTDLALVTDGLRAEREQGITIDVAYRYFATPKRKFIIADTPGHIQYTRNMVTGASTAQLVIVLVDARHGLLEQSRRHAFLASLLGIQHIVLAVNKMDLIGWDKEKFEAIRDEFHAFAARLDVHDVATIPISALHGDNVVTKSDQTPWYEGPALLSHLEEVYIAGDRNMVDVRFPVQYVIRPHTREHQDHRSYAGTVASGVMRAGDEVVVLPVGKHTRITAIEGPNGPVEEAFPPMAVSVTLADEIDISRGDLIARTHNQPRVAQEFDATVCWMADGAALEPGRDYVIKHTTRTTHAKVTALDYRLDVNTLHRDKSATALKLNELGRISLRTQVPLLLDEYTRNPSTGSFILIDPHTNGTVAAGMVLRDASAQAASPNTVRHKPSAIAQARPRGKTVWFTGLSGSGKSSVAMLVEQKLLEKGSLAYVLDGDNLRHGLNADLGFSMADRAENLRRLAHVAALLADCGNVVLVPAISPLAEQRELARKVHADAGFEFIEVFCDTPIDECEKRDPKGLYAKARAGEITQFTGIDSPYQPPANPDLRLTPDGTIEEQAQRVLDLLESRG
>NZ_LT703505.1|WP_041320848.1|1710628_1711114_+|RrF2-family-transcriptional-regulator
MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGREGGYELARSGSDISIADVLRCIDGPLASVRDIGLGDLPYSGPTAALTDVWRALRASMRSVLEQTTLADVATGGLPKHVAQLADDYRKQESQRHGSARTGD
>NZ_LT703505.1|WP_008254755.1|1711131_1711521_-|VOC-family-protein
MSISFNHTIVASRDKRESAEFLTELFGLPSPKPFGHFMVVELEHGATLDYADAPDGADIPRQHYAFLVSEQEFDTIYDKIRARGMQHWADPGATRPGEINHNDGGRGVYFTDPSGHAMEILTRPYGSGG
>NZ_LT703505.1|WP_020821960.1|1711564_1711978_-|VOC-family-protein
MDFTSTSIAHVRLTVTDIERSRQFYESVFGWPVLLEVPDNADEATRNQLSFLFGGVIYDLGGTLLGLRPVAAGRFDENRVGLDHIAFRLTTRDELDSAAAHLDELGVAHEPIKDIGPSYILEFRDPDNIALELTAPK
>NZ_LT703505.1|WP_008254760.1|1712044_1712923_+|LLM-class-flavin-dependent-oxidoreductase
MTMPVMEPDLDATVLETWARTIDEGPFSSLCWGERIAFDNPDNLTLLGALAAWTDRVRLLTTVIVPQLHDPVMLAKGLATGDMLSGGRLTVGIGVGGRHEDYHAVGADPATQTMRGMAERVAVMKRVWAGEKTTDSVRPVGPAPVQPGGPPLFVGSIGPKTIRSAAAWADGLAGTTLDLDVAKQNELFDVTRDAWARAGKPKPHLITSFWFAFGSPEESRAQVHRHLRRYMNWIPAEYVDAMAPMTGWAGSEDELLDVLRRFEEIGTDEVQLIPTSSDVDQLRRAAEVAGRL
>NZ_LT703505.1|WP_020821961.1|1712992_1713859_+|tetratricopeptide-repeat-protein
MTQQELPAPLAEMTGLMARCANNGDFAGAALQANELVTLCRATLGERDPNVLELKVALATVQLRAGEDADVYADLDALIPDLVAVLGPDHLSTLTARHLFAGRQQPPVSSLSEWSQLVADEQRILGPDHESTLMARERVAEKRWETGDFAGAMTEGQHVLAARRRVLGDDHADTLGTRLMLAIWRGRAGDIPGAITELEWLIGELRDKLGSGHVHLLMARHMFTLWAPKRAGVTDGVTAWEALVEEEARVLGDEHPVTIAARQELAGWCARHRARAGEPDTPVDWSAS

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Crispr_ID: NZ_LT703505_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT703505_3

2685665-2685778

Orphan

Consensus_repeat	Method
GGTGTGATCGCGGCTTCGCCGCTCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT703505_3

>merge|NZ_LT703505|3|2685665-2685778|CRISPRCasFinder
GGTGTGATCGCGGCTTCGCCGCTCAACATGGTCCATCGGCTCGGGTGTGATCGCGGCTTCGCCGCTCAACATGGTCCATCGGCTCGGGTGTGATCGCGGCTTCGCCGCTCAACA

>NZ_LT703505|3|3|2685665-2685778|CRISPRCasFinder
GGTGTGATCGCGGCTTCGCCGCTCAACA	TGGTCCATCGGCTCGGGTGTGATCGCGGCTTCGCCGCTCAACATGGTCCATCGGCTCG
GGTGTGATCGCGGCTTCGCCGCTCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT703505.1\|WP_003878110.1\|2683080_2683371_+\|YggT-family-protein	unknown	unknown	gnl\|CDD\|223833
NZ_LT703505.1\|WP_072501282.1\|2680675_2681422_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|224413
NZ_LT703505.1\|WP_008256205.1\|2687440_2687971_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|224793
NZ_LT703505.1\|WP_054585463.1\|2684867_2685542_-\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|224837
NZ_LT703505.1\|WP_054585465.1\|2690890_2691643_+\|MSMEG_4193-family-putative-phosphomutase	unknown	unknown	gnl\|CDD\|163560
NZ_LT703505.1\|WP_008256210.1\|2689070_2689340_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703505.1\|WP_008256203.1\|2686048_2687404_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|181163
NZ_LT703505.1\|WP_054585461.1\|2682270_2682915_+\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|224712
NZ_LT703505.1\|WP_054585469.1\|2681427_2682204_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|223402
NZ_LT703505.1\|WP_014384578.1\|2689336_2690359_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
NZ_LT703505.1\|WP_054585459.1\|2678238_2679189_+\|cell-division-protein-FtsQ/DivIB	unknown	unknown	gnl\|CDD\|224505
NZ_LT703505.1\|WP_014384579.1\|2690513_2690816_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703505.1\|WP_161807821.1\|2687973_2689038_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_LT703505.1\|WP_054585462.1\|2684525_2684864_+\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|376764
NZ_LT703505.1\|WP_008256225.1\|2692302_2693091_+\|SCO1664-family-protein	unknown	unknown	gnl\|CDD\|274813
NZ_LT703505.1\|WP_008256153.1\|2683634_2684432_+\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226127
NZ_LT703505.1\|WP_008256222.1\|2691704_2692292_+\|DUF3090-domain-containing-protein	unknown	unknown	gnl\|CDD\|213872
NZ_LT703505.1\|WP_008256146.1\|2679455_2680613_+\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|236468
NZ_LT703505.1\|WP_085976493.1\|2693166_2693934_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	unknown	unknown	gnl\|CDD\|224139
NZ_LT703505.1\|WP_054585458.1\|2676760_2678242_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757

Protein	Function_ID	Function_description	E-value
NZ_LT703505.1\|WP_003878110.1\|2683080_2683371_+\|YggT-family-protein	gnl\|CDD\|223833	COG0762, COG0762, Predicted integral membrane protein [Function unknown].	1.05966e-07
NZ_LT703505.1\|WP_072501282.1\|2680675_2681422_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|224413	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism].	6.6978e-96
NZ_LT703505.1\|WP_008256205.1\|2687440_2687971_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|224793	COG1881, COG1881, Phospholipid-binding protein [General function prediction only].	5.12793e-60
NZ_LT703505.1\|WP_054585463.1\|2684867_2685542_-\|phosphoribosyltransferase	gnl\|CDD\|224837	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only].	7.58023e-93
NZ_LT703505.1\|WP_054585465.1\|2690890_2691643_+\|MSMEG_4193-family-putative-phosphomutase	gnl\|CDD\|163560	TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.	9.41418e-122
NZ_LT703505.1\|WP_008256203.1\|2686048_2687404_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|181163	PRK07906, PRK07906, hypothetical protein; Provisional.	0
NZ_LT703505.1\|WP_054585461.1\|2682270_2682915_+\|cell-division-protein-SepF	gnl\|CDD\|224712	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown].	3.81459e-45
NZ_LT703505.1\|WP_054585469.1\|2681427_2682204_+\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|223402	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only].	3.06984e-80
NZ_LT703505.1\|WP_014384578.1\|2689336_2690359_-\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00934122
NZ_LT703505.1\|WP_054585459.1\|2678238_2679189_+\|cell-division-protein-FtsQ/DivIB	gnl\|CDD\|224505	COG1589, FtsQ, Cell division septal protein [Cell envelope biogenesis, outer membrane].	1.98809e-51
NZ_LT703505.1\|WP_161807821.1\|2687973_2689038_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_LT703505.1\|WP_054585462.1\|2684525_2684864_+\|phage-holin-family-protein	gnl\|CDD\|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	0.00355035
NZ_LT703505.1\|WP_008256225.1\|2692302_2693091_+\|SCO1664-family-protein	gnl\|CDD\|274813	TIGR03843, Phosphatidylinositol_3-_and_4-kinase, conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.	2.09061e-125
NZ_LT703505.1\|WP_008256153.1\|2683634_2684432_+\|DivIVA-domain-containing-protein	gnl\|CDD\|226127	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning].	5.87672e-33
NZ_LT703505.1\|WP_008256222.1\|2691704_2692292_+\|DUF3090-domain-containing-protein	gnl\|CDD\|213872	TIGR03847, TIGR03847, conserved hypothetical protein. The conserved hypothetical protein described here occurs as part of the trio of uncharacterized proteins common in the Actinobacteria.	2.70755e-88
NZ_LT703505.1\|WP_008256146.1\|2679455_2680613_+\|cell-division-protein-FtsZ	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_LT703505.1\|WP_085976493.1\|2693166_2693934_+\|3'(2'),5'-bisphosphate-nucleotidase-CysQ	gnl\|CDD\|224139	COG1218, CysQ, 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase [Inorganic ion transport and metabolism].	1.26252e-75
NZ_LT703505.1\|WP_054585458.1\|2676760_2678242_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0

>NZ_LT703505.1|WP_054585463.1|2684867_2685542_-|phosphoribosyltransferase
MNRPNGFLRRTATRNFRDRREAGRALAEELTSYRGRDLLVFGLARGGVPVAWEIAAALGAPLDVFLVRKLGVPNWSELAMGALASGGGLVMNDDVVASLRVTDEQVREVIDSETTELLRREHAYRGDRPIADPRDRVVILADDGIATGASMLAAVRAVRAAGPESITVAVPVGPESACRDLAREADDVVCATMPPGFEAVGQVYDDFHQVSDDEVRELLATPTA
>NZ_LT703505.1|WP_054585462.1|2684525_2684864_+|phage-holin-family-protein
MLVIALVLALIGLVALVFAVVTSNELVAWLCIAASVVGVVLLILDALRERQHREPGGAEDQDADEARPDEDDYVDYPEEAAAEGEAEAVADGTEPTAESSVAAEGRGDESAK
>NZ_LT703505.1|WP_008256153.1|2683634_2684432_+|DivIVA-domain-containing-protein
MPLTPADVHNVAFSKPPIGKRGYNEDEVDAFLDLVEAELTRLIEENSDLRQRIEELDQELASGGGAAAPAAAAAPTQAIPVREPEPEPVKAAAAPAAAVNNEEQAMKAARVLSLAQDTADRLTSTAQAESEKMLSDARANADQILSEARSTAETTVAEARQRADAMLADAQTRSETQLRQAQEKADALQADAERKHSEIMGTINQQRTVLEGRLEQLRTFEREYRTRLKTYLESQLEELGQRGSAAPVDSSADAGGFDQFNRGNN
>NZ_LT703505.1|WP_003878110.1|2683080_2683371_+|YggT-family-protein
MVLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWHPTGITVVVLEIIMSITDPPVKLLRRLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
>NZ_LT703505.1|WP_054585461.1|2682270_2682915_+|cell-division-protein-SepF
MSTLHKVKAYFGMAPMDDYEDEYYDDRAPSRGFPRPRFDDGYGRYDGDDYDDPRREPADYPPPGGYRGGYAEEPRYGSVHPREFDRGERGGPRFGSWLRNSTRGALAMDPRRMAMMFEEGHPLSKITTLRPKDYSEARTIGERFRDGTPVIMDLVSMDNADAKRLVDFAAGLAFALRGSFDKVATKVFLLSPADVDVSPEERRRIAETGFYAYQ
>NZ_LT703505.1|WP_054585469.1|2681427_2682204_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MAVEISNGGDRESELTHALAAVRSRLAAAAEAAGRNVAEIEVLPITKFFPATDVVTLSRLGCRAVGESRDQEATAKVAEVTRLLAAPERADVGNPRWHMVGHIQRNKARSVAGWAHTAHSVDSAHLVTALDRGVAAALAEGRRTDPMRIYVQVSLDGDESRGGVDISRPGAVDQMCDQVEGSTNLALAGLMAIPPLDSDPDEAFDRLQSEHRRVLESHRNAVGLSAGMSNDFEIAVKHGSTCVRVGTALLGRRRLPSP
>NZ_LT703505.1|WP_072501282.1|2680675_2681422_+|peptidoglycan-editing-factor-PgeF
MQPGGQRLPDTGHVSVRIRRVTTTRAGGVSKPPFDTFNLGDHVGDDPAAVAENRSRLAAGIGLRAGRMVWMNQVHGDRVEVVDGPREAAVDDTDALVTRTARLALAVVTADCVPVLMADARAGVAAAVHAGRVGAQRGVVARTVEAMLELGARPHDISALLGPAVSGLNYEVPAAMADEVEAALPGSRTTTGAGTPGLDLRAGIACQLQGLGVTAIDIDPRCTVGDPTLFSHRRDAPTGRLASLVWME
>NZ_LT703505.1|WP_008256146.1|2679455_2680613_+|cell-division-protein-FtsZ
MTPPHNYLAVIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALLMSDADVKLDVGRDSTRGLGAGADPEVGRRAAEDAKDEIEELLRGADMVFVTAGEGGGTGTGGAPVVASIARKLGALTVGVVTRPFSFEGKRRGNQAESGIAALRESCDTLIVIPNDRLLQMGDAAVSLMDAFRSADEVLLNGVQGITDLITTPGLINVDFADVKGIMSGAGTALMGIGSARGEGRSLKAAEIAINSPLLEASMEGAQGVLMSIAGGSDLGLFEINEAASLVQDAAHQDANIIFGTVIDDSLGDEVRVTVIAAGFDATGPGRKPVIGGNADKEEKVGAHRIESAKAGKLTSTLFEPVDAVSVPVHTNGSTLNIGGDDDDVDVPPFMRR
>NZ_LT703505.1|WP_054585459.1|2678238_2679189_+|cell-division-protein-FtsQ/DivIB
MTQPPPEPTVGDQADNPVPDDAATEPLVTGAGDQAAADQTPDPAEVEGPRRRARRERAERRAAQARATAIEEARREAKRRATGRPVHEPKPVARGVVRGLKMLLVTILLVIVGVGLALVLYFTPAMSARNIVVIGTGAVTREEVLDAARVRPGTPLLQINTSQVADRVAAIRRVASARVQRQYPSALRITIVERVPVAVKDFPDGPHLFDRDGVDFATGPPPPALPYLDVADPGPNDPATKAALQVLTALRPEVSDQVGRVAAPSVASITLTLGDGRVVIWGTTDRTDEKAEKLSALLTQPGKVYDVSSPDLPTVK
>NZ_LT703505.1|WP_054585458.1|2676760_2678242_+|UDP-N-acetylmuramate--L-alanine-ligase
MTTEQLPPELQRVHMVGIGGAGMSGIARILLDRGGLVSGSDAKESRGIHALRARGAQITIGHDAASLDLLPGGATAVITTHAAIPKTNPELVEARRRGIPVILRPAVLAKLMNGRTTLMVTGTHGKTTTTSMLIVALQHCGRDPSFAVGGEMGEAGTNAHHGSGDCFVAEADESDGSLLEYTPNVAVVTNIETDHLDFYGSADAYVGVFDSFVDRLAPGGALVVCVDDPGAAALARRTAELGIRVLRYGSGASLSGEPLAATLLSWQQQGTEAVAQIQLAPDLDPEQHPRVMRLSVPGRHMALNAMGALLAALEIGAPADAVLDGLAGFEGVRRRFELVGTAGNGQPVRVFDDYAHHPTEIVATLAAVRTLLEQSGDGRSIAVFQPHLYSRTKAFAEEFGHALDAADEVFVLDVYGAREQPLAGVSGASVAEHVSVPVRYLPNFSAAAEQVAAVAGPGDVIVTMGAGDVTLLGPEIVTALRVRANRGAPGALR
>NZ_LT703505.1|WP_008256203.1|2686048_2687404_+|M20/M25/M40-family-metallo-hydrolase
MTIQSGATEEPTNPSDDVVEVVSKLIRFDTTNTGEPETTKGEAECAQWVAEQLAEVGYAPQYVESGAPGRGNVFVRLPGADPSRGGLLIHGHLDVVPAEPTEWSVHPFSGAVKDGFVWGRGAIDMKDMVGMMIVVARQLKRAGIVPPRDLVFAFIADEEHGGTFGAQWLVDNRPDLFDGVTEAIGEVGGFSLTVPRRDGGERRLYLIETAEKGLSWMRLTARGPAGHGSMVHDQNAVTAVAEAVARLGRHQFPLVLTDTVAQFLAAVSEETGLTFDTESGDLRGAVEKLGPMARMLKAVLHDTANPTMLKAGYKANVVPAIAEAVVDCRILPGRKEAFEAEIDELLGPDVTREWIKDFSSYQTSFDGDLVDAMNAAVLALDPDARTVPYMLSGGTDAKSFARLGIRCFGFSPLRLPPDLDFTALFHGVDERVPIDALRFGTDVLTHFLTHC
>NZ_LT703505.1|WP_008256205.1|2687440_2687971_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MSTAPDPYASLPKLPTFTLTSQSVTDGQPLAKPQVSGIMGAGGEDVSPQLSWSGFPDGTRSFAVTVYDPDAPTASGFWHWAVANLPADVTELAEGAGDGSNLPGDALTLVNDAGLRRYLGAAPPAGHGPHRYYIAVHAVDTDKLDLPEDASPAFLGFNLFQHAIARAVIHATYEQK
>NZ_LT703505.1|WP_161807821.1|2687973_2689038_-|quinone-dependent-dihydroorotate-dehydrogenase
MYGLLRQLFFVIPPERIHTLVFGFLRGVTAVAWARRALRRLLGPTDPALASTVFGVRFPGPLGLAAGFDKDGLGVLTWGALGFGHAEVGTVTAHPQPGNPAPRMFRLPADRALLNRMGFNNLGAGALAMRLARQRPEVPIGVNIGKTKATPADQAVDDYRASARLVGPLASYLVVNVSSPNTPGLRDLQAVDSLRPILSAVLAETTTPVLVKIAPDLSDADVDAIADLAVELGLAGIVATNTTISRQGLRTPGVDELGAGGISGPPVARRAVEVLRRLYGRVGDRLVLISVGGIENADDAWERITAGASLLQGYTGFIYGGGLWAKQIHDGVARRLHDGGFASLSEAVGAAARG
>NZ_LT703505.1|WP_008256210.1|2689070_2689340_-|hypothetical-protein
MTAARHSRLPAGWDTEMSDEYEWVPLRLPPEVTRVSASTRLSIEAEYRGWELTRVRLYNDGSRRVLLRRKKSRLDGTGYEGRRPDQPQL
>NZ_LT703505.1|WP_014384578.1|2689336_2690359_-|hypothetical-protein
MLSLAVLLGATVGCSSNPLAGAPRTIEPAAAAVSPPPSQSPAGAVRPLPAHAAAAVFDAGTRRLAVLAPGSDPAAPGSITVFGEAQAPPRVVDLPGPASALTDDGQGTAYLAARGGYFAVDLSTGHTAQVSVSDAAQTEFTAVARRADGRLVLGSADGAVYTLASPKPGAVSAASVASRNKVFARVDCLVTQGDTTVVLDRGQTSVTTIDADGHVQQALRAGRGATTMAADALGRVLVADTRGGQLLVYGVDPLILRQAYPVSQAPYGLAGSRALAWVSQTVSNIVIGYDLSTGIPVEKVRYPTVQQPNSLAFDEASDTLYVVSGSGAGVQVIDHAAGRR
>NZ_LT703505.1|WP_014384579.1|2690513_2690816_+|hypothetical-protein
MAVTADRHMTQEEFAVEDMSTGIFASGYGQVGDGRSFSFHIENRSLVVEVYRPRLAGPVPQADEVVATAVRSLVDIDLTDERSLSAAVRDSVAHAEPVSR
>NZ_LT703505.1|WP_054585465.1|2690890_2691643_+|MSMEG_4193-family-putative-phosphomutase
MTVILLRHGRSSSNTAGILAGRSEGVDLDDKGREQAAALIDRIGDLPIRELITSPLLRCRRTLEPLADALCLAPLVEDRLAEVDYGEWTGRKIGELVSEPLWKVVQAHPSAAVFPGGEGLAQVQARAVAAVREHDRRLASEHGGDALWVACTHGDVIKAVIADAYGIHLDGFQRVTADPASVSVIRYTELRPFVLHVNHTGARLSAALRAGPQPKEEATAETDGQPNGEAQAPPAAGVPSSDAVVGGSTD
>NZ_LT703505.1|WP_008256222.1|2691704_2692292_+|DUF3090-domain-containing-protein
MSRAIHVFRTPDRFVAGTVGQPGNRTFYIQAVHDARVVSVILEKQQVAVLAERIGALLLEVNRRFGTPVPPEPAEVEDLKPLITPVDAEFRVGTMGLGWDSEAQTVVVELLAVTDAEFDASVVLDDTEEGPDAVRVFLTPESARQFASRSNRVISAGRPPCPLCDEPLDPEGHICARANGYRRNALLGSDDDPEV
>NZ_LT703505.1|WP_008256225.1|2692302_2693091_+|SCO1664-family-protein
MLRNGELTVIGRIRSASNATFLCESTLDERAVHCVYKPVAGEAPLWDFPDGTLAGRERAAYLVSAQLGWNIVPYTIIRHGPAGPGMLQQWVQQPGDTVDTEPRPGPDLVDLFPAGKAQPGYLPVLRAYDYAGDEVVLMHADDIRLWRMAVFDVLVNNADRKGGHVLRDLDGHIFGVDHGVCLHVEDKLRTVLWGWAGKPIDSQTCKAVAGLAEALTGSFGDELAEHITSAEIAALRMRAHALLDNPVMPGPNRHRPIPWPAF
>NZ_LT703505.1|WP_085976493.1|2693166_2693934_+|3'(2'),5'-bisphosphate-nucleotidase-CysQ
MTDAALAADLAAEAGELLLKVRDEVGFGYPWALGDAGDSLANDLILRRLRVERPGDAVLSEEAYDDLSRLQHDRVWIIDPLDGTREFSTPGRDDWAVHIALWQRPSDGQREITDAAVSLPARGNIVYRSDTVTAGAARAGVTDTIRIAVSATRPPAVLHRMRQTLPIQPVAIGSAGAKAMAIIDGDVDAYVHAGGQWEWDSAAPAGVVMAAGMHASRLDGSPMRYNQLDPYLPDFVMCRAELAPILLGAIRDAWR

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Crispr_ID: NZ_LT703505_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT703505_4

4287501-4287597

Orphan

Consensus_repeat	Method
TGCCCGGCGTCGGCTGTGGCTCCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT703505_4

>merge|NZ_LT703505|4|4287501-4287597|CRISPRCasFinder
TGCCCGGCGTCGGCTGTGGCTCCGGTGGCCAGTTCGCCGGCCCCGGCGGCGTGCCCGGCGGCACCGGCTGCCTGCCCGGCGTCGGCTGCGGCTCCGG

>NZ_LT703505|4|4|4287501-4287597|CRISPRCasFinder
TGCCCGGCGTCGGCTGTGGCTCCGG	TGGCCAGTTCGCCGGCCCCGGCGGCGTGCCCGGCGGCACCGGCTGCC
TGCCCGGCGTCGGCTGCGGCTCCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT703505.1\|WP_042913032.1\|4286410_4287193_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235975
NZ_LT703505.1\|WP_042912569.1\|4284105_4285218_-\|acyl-CoA/acyl-ACP-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_LT703505.1\|WP_008258621.1\|4281939_4282425_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_LT703505.1\|WP_042912571.1\|4285214_4286414_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|173841
NZ_LT703505.1\|WP_042913034.1\|4292449_4293259_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|379298
NZ_LT703505.1\|WP_042912576.1\|4295000_4296359_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|367155
NZ_LT703505.1\|WP_042912564.1\|4279841_4281053_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225755
NZ_LT703505.1\|WP_042912568.1\|4283339_4284089_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|366780
NZ_LT703505.1\|WP_008258618.1\|4279039_4279792_-\|FAD-dependent-thymidylate-synthase	unknown	unknown	gnl\|CDD\|234847
NZ_LT703505.1\|WP_009952956.1\|4293703_4294162_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703505.1\|WP_036453354.1\|4282496_4283297_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984
NZ_LT703505.1\|WP_008258632.1\|4293249_4293711_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_LT703505.1\|WP_008258652.1\|4298573_4299224_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|132427
NZ_LT703505.1\|WP_042912578.1\|4296365_4297448_-\|dihydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|226326
NZ_LT703505.1\|WP_042913037.1\|4294158_4294896_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
NZ_LT703505.1\|WP_042913030.1\|4278007_4278910_-\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_LT703505.1\|WP_042912581.1\|4297444_4298452_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239607
NZ_LT703505.1\|WP_172417532.1\|4290853_4292389_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341286
NZ_LT703505.1\|WP_051445912.1\|4281105_4281840_-\|cell-division-protein-DivIVA	unknown	unknown	gnl\|CDD\|274008
NZ_LT703505.1\|WP_042912573.1\|4287620_4290857_-\|carbamoyl-phosphate-synthetase	unknown	unknown	gnl\|CDD\|237263

Protein	Function_ID	Function_description	E-value
NZ_LT703505.1\|WP_042913032.1\|4286410_4287193_-\|SDR-family-oxidoreductase	gnl\|CDD\|235975	PRK07231, FabG-like, SDR family oxidoreductase.	1.12702e-124
NZ_LT703505.1\|WP_042912569.1\|4284105_4285218_-\|acyl-CoA/acyl-ACP-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	3.57619e-42
NZ_LT703505.1\|WP_008258621.1\|4281939_4282425_-\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	5.01316e-61
NZ_LT703505.1\|WP_042912571.1\|4285214_4286414_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.80373e-131
NZ_LT703505.1\|WP_042913034.1\|4292449_4293259_+\|thioesterase-family-protein	gnl\|CDD\|379298	pfam13622, 4HBT_3, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	9.53006e-22
NZ_LT703505.1\|WP_042912578.1\|4296365_4297448_-\|dihydrodipicolinate-reductase	gnl\|CDD\|226326	COG3804, COG3804, Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown].	1.66987e-38
NZ_LT703505.1\|WP_042912564.1\|4279841_4281053_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	1.37232e-105
NZ_LT703505.1\|WP_042912568.1\|4283339_4284089_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|366780	pfam01738, DLH, Dienelactone hydrolase family.	3.47996e-60
NZ_LT703505.1\|WP_008258618.1\|4279039_4279792_-\|FAD-dependent-thymidylate-synthase	gnl\|CDD\|234847	PRK00847, thyX, FAD-dependent thymidylate synthase; Reviewed.	3.54e-100
NZ_LT703505.1\|WP_042912576.1\|4295000_4296359_+\|HNH-endonuclease	gnl\|CDD\|367155	pfam02720, DUF222, Domain of unknown function (DUF222). This family is often found associated to the N-terminus of the HNH endonuclease domain pfam01844. The function of this domain is uncertain. This family has been called the 13E12 repeat family.	3.2479e-79
NZ_LT703505.1\|WP_036453354.1\|4282496_4283297_-\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0
NZ_LT703505.1\|WP_008258632.1\|4293249_4293711_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	1.40179e-12
NZ_LT703505.1\|WP_008258652.1\|4298573_4299224_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|132427	TIGR03384, betaine_BetI, transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme. [Regulatory functions, DNA interactions].	0.000338941
NZ_LT703505.1\|WP_042913037.1\|4294158_4294896_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	4.13355e-99
NZ_LT703505.1\|WP_042913030.1\|4278007_4278910_-\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	7.08269e-146
NZ_LT703505.1\|WP_042912581.1\|4297444_4298452_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239607	cd03531, Rieske_RO_Alpha_KSH, The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.	7.16801e-30
NZ_LT703505.1\|WP_172417532.1\|4290853_4292389_-\|AMP-binding-protein	gnl\|CDD\|341286	cd17631, FACL_FadD13-like, fatty acyl-CoA synthetase, including FadD13. This family contains fatty acyl-CoA synthetases, including Mycobacterium tuberculosis acid-induced operon MymA encoding the fatty acyl-CoA synthetase FadD13 which is essential for virulence and intracellular growth of the pathogen. The fatty acyl-CoA synthetase activates lipids before entering into the metabolic pathways and is also involved in transmembrane lipid transport. However, unlike soluble fatty acyl-CoA synthetases, but like the mammalian integral-membrane very-long-chain acyl-CoA synthetases, FadD13 accepts lipid substrates up to the maximum length of C26, and this is facilitated by an extensive hydrophobic tunnel from the active site to a positively charged patch. Also included is feruloyl-CoA synthetase (Fcs) in Rhodococcus strains where it is involved in biotechnological vanillin production from eugenol and ferulic acid via a non-beta-oxidative pathway.	2.33369e-133
NZ_LT703505.1\|WP_051445912.1\|4281105_4281840_-\|cell-division-protein-DivIVA	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	2.28412e-05
NZ_LT703505.1\|WP_042912573.1\|4287620_4290857_-\|carbamoyl-phosphate-synthetase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	5.77895e-168

>NZ_LT703505.1|WP_042913032.1|4286410_4287193_-|SDR-family-oxidoreductase
MTSQDLTGRTAIITGASRGIGLSIAQQLAAAGANVVLTARKQEAADEAAAQVGERAVGVGAHAVDEDAARRCVDMTLERFGTLDILVNNAGTNPAYGPLIDQDHARFTKIFDVNLWAPLLWTSLAVKSWMGEHGGSIVNTASIGGMHQSPAMGMYNATKAALIHVTKQLALELSPRVRVNAICPGVVRTRLAEALWKDHEDPLASSIALGRIGEPIDVAAAVAFLVSDAASWITGETMVIDGGLLLGAAQGFRPAPGGGQ
>NZ_LT703505.1|WP_042912571.1|4285214_4286414_-|acyl-CoA-dehydrogenase-family-protein
MNAVDTAELDARVQALLDEHDPNESDAREFLGAQYDAGLAWVHLPRGFGGLDLPRTAQDRVDARLAAAGAPVGGTPKNYIGMGMAAPTIAAFGTDEQKRKFLRPLFTGEQIYCQLFSEPGGGSDLAGVSTRAVRDPHNPEDWIVNGQKVWTSQAQHAHMAILVARTDPAVPKHAGLTYFLCDMTQPGVEIRPLRQITGEAEFNEVFLTDVRVPDANRLGPEGGGWRVATTTLNNERVAIGSRAGAPREGGHIGKVADAWRAEPALRDPAMHDQLMRLWVEAEVFRLAGERLRQQAATGQPGPEGAGMKVAFAKLAQAISGFEIELHGESGLYYDDWTLRRPETVDLVGRGPGYRYLRARGNSIEGGTSEILRNTISERILGLPGEHRVDKDAAWKDLPR
>NZ_LT703505.1|WP_042912569.1|4284105_4285218_-|acyl-CoA/acyl-ACP-dehydrogenase
MSSLRAATGDLLYSDTEEALRAGVRQLFAERCPPESVAGVYDAQPQDFSGVWRTLATELGVAGLLVPESLGGAGASAREAAVVMEEIGRAVAPVPFLSSAVLATVALLRAGDTRTVSGLAQGELTAALVVPLTTAPGDPVTGVSGGPGGLSGSVTAVAGAGEADVLVVPVTGPDGLELHTVDRAAAGVQVSPLLALDMTRPLAAVTFSGAPSSKVGAGDGPVADAVRTGAALLASEQLGVAQWCFDTTLDYAGQRRQFGRTIGSYQAIKHRLADLWFDVGAAAAAARYAADTCARADDDAAAAAAIAQAYCSDIAVHAAEECIQLHGGIGMTWEYPAHLYLKRAKSDQLAFGTGYRHRARLAELVNLPPT
>NZ_LT703505.1|WP_042912568.1|4283339_4284089_+|dienelactone-hydrolase-family-protein
MPNITDVVTTPDGTCPVHLFTPDGPESQVPWPGVVMYPDAGGVRGTFEEMAARLAGFGYAVLLPDVYYRTADWAPFDMATVFNDQSERGRLFSMIGSVTPDRMAADATAFFDYLAARPEVSGERFGVCGYCMGGRTSLIVAGRVPDRVAAAASFHGGGLVTDTDDSPHLLADRMSATVYVGGAQNDASFTADHAEQLDKALTAAGVEHTIEWYSAGHGFAVPDNAPYDPAAAERHWDAMTDVFAAAFPR
>NZ_LT703505.1|WP_036453354.1|4282496_4283297_-|thymidylate-synthase
MPIPTPYEDLLRLVLDEGTAKSDRTGTGTRSLFGRQLRYDLSAGFPLLTTKKVHLKSVVYELLWFLRGDSNVGWLREHGVTIWDEWASDTGDLGPIYGVQWRSWPTPSGEHIDQISAALDLLRTDPNSRRIIVSAWNVGEIPQMALPPCHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQSGLSVGEFVWTGGDCHIYDNHVEQVRLQLSREPRPYPELVLGERDSIFDYTYDDVVVRNYDPHPAIKAPVAV
>NZ_LT703505.1|WP_008258621.1|4281939_4282425_-|dihydrofolate-reductase
MGLVWAQSTSGVIGRGGGIPWNVPEDLARFKEVTIGHTVVMGRRTWDSLPAKVRPLPGRRNVVLSREDGFAADGAQVVGSLDAAFARAEGEPAVWVIGGGQVYLAALPYATRCEVTEIELDLRRDDDDALAPALDDTWVGETGEWQASRSGLRYRFHSYRR
>NZ_LT703505.1|WP_051445912.1|4281105_4281840_-|cell-division-protein-DivIVA
MITEPVKTFSRKFMGYDASAVDAHIEMLTTKQQLLLDDVESLRARLQESGEQTAALRKEVAALTDTSPSSHAMQKRMAKMLQRAVDEVAEMQAEARAEADALIAAAEAEAEAAERKRDEVLADMAAQQKALEAEYEQTKEKLDAELAEMRAETQAAIDEARRNAERECERLLGDAKQGADHYRDKARRAVDEATAQRIEILEQLMGVYRDLDGVPAALEAAYQEQKNPSEDGALAPVDGKVRAS
>NZ_LT703505.1|WP_042912564.1|4279841_4281053_-|winged-helix-turn-helix-domain-containing-protein
MSTRRLSAAQARRIAVAAQGFTEPRPGGQITRVHLKRLISRIQVLQLDSVSVAVRAHYAPVFSRLGPYDRDVLDRAAWGLRSSRLLAEYWAHEAALMAVEDWPLLRWRMRQYRHGRWGTHIVKANPRLAEKVVAAVAELGPSTAGQIEAHLAAGPRGPRGSWWGSRSDTKWVAEALFSAGVLTTATRVGFARHYDLVERVLPAAVLAREVDDDEALRELTLRAATALGVGTEADIRDYFRLSAAQVKPAIAQLLAAGDIERVDVDGWSGPAYLRAGRTVPRVDRGTALLCPFDPLIFFRPRVERLFEFHYRIEIYTPAAKRQYGYYVWPLLMDGRLVARVDLKADRPADTLRVVGTFAEPDAPKARVAAALAGELRSMASWLGLGGFSVSGRGDLAADLRAIS
>NZ_LT703505.1|WP_008258618.1|4279039_4279792_-|FAD-dependent-thymidylate-synthase
MAEIAPLRVQLIAKTEFLAPPDVPWSTDADGGPALVEFAGRACYQSWSKPNPKTATNAGYIKHIIDVGHLSVLEHASVSFYITGLSRSCTHELIRHRHFSYSQLSQRYVPETDSHVVVPPGMEDDPELRQILAAAADASRATYTELLAKLEAKFADQPNAVLRRKQARQAARAVLPNATETRIVVTGNYRAWRHFIAMRASEHADVEIRRLAIECLRQLAGAAPAVFADFEISALADGTEVATSPLATEA
>NZ_LT703505.1|WP_042913030.1|4278007_4278910_-|4-hydroxy-tetrahydrodipicolinate-synthase
MSTAGFDAPARLGTVLTAMVTPFRPDGSLDTATAAHLANHLIDAGCDGLVVSGTTGESPTTTDDEKRELLRVVLEAVGDRARVIAGAGSYDTAHSVRLAKACAAEGAHGLLVVTPYYSKPPQSGLIAHFTTVADATALPVVLYDIPPRSVIPIQPETIRALAAHPNIVGIKDAKADLHSGGQIIAETGLAYYSGDDALNLPWLAMGATGFISVISHVAANQLREMLSAFNSGDIATARKINSTVAPLCDAMARLGGVTLSKAGLRLQGIDVGDPRLPQMPATPEQIDALAVDMRAASVLR
>NZ_LT703505.1|WP_042912573.1|4287620_4290857_-|carbamoyl-phosphate-synthetase
MSASLLVANRGEIALRIIRTATELGMRTIAVYADDDAQSPHVHAADEAIVLPGSGPRAYLDQSAMLAVAKRTGADLIHPGYGFLSENAEFADACVAGGVTFVGPDPGVLGLLGNKTAARGAALAAGVPVLPATDGASSVEEVAAFFAAQRGGIMLKALAGGGGRGMRKVHRADQIDDAYQRCAAEAQLGFGDPALYAEALLDDARHIEVQVVAAPAGHQTHALAVGDRDCSIQRRYQKLVEIAPAQGLSDELRRALHQAAVRLCARVGLRGLATVEFLVTGEDFVFLEANPRIQVEHTVTEEITGLDLVAVQLAIAGGTSFYGLGLPAGIASDGLEVIGEPAAQRGIAIQLRVNAETFGPDLSVLPSAGTLTAFTPPSGPGVRVDTYGRPGLAVSPQYDSLLAKVIVHVRGTSWPAALRKADTALSEFGIEGIHTNIGFLRELLRAERVESGWVSTGFVDEKLPELARATQSHQQEPPPASVELYPGEEALRAQLAGTVVEVAPEGVEHAAGSQLVVLEAMKMQHVLVAPDALRTVRTLVTPGQVVGTGDPLLIFTRTESGNDGESARAATDLDRPRADLDEVTRRHALTLDEGRAAAVAKRHQQGRRTARENIADLVDPGSFVEYGALAIAAQRSRRSEEDLIANTPADGLVAGLATIGAQRFGRAAAQAVVVSYDYTVLAGTQGMRNHAKTDRAFDLAARKRLPVVLFAEGGGGRPGDTDVGGAAGLDVPTFRMLAGLRGEVPLVSIVSGRCFAGNAALAGVCDVIIATPDANIGMGGPAMIEGGGLGVYPPEAIGPIGVQRRNGVVGLVARDEAHAVALAKQYLSYFQGSLGEWEEPDPRLARHVVPQNRLRAYDVHRAIEAIVDVGSVLELRPDYGVGIVTALVRVEGVPYGLIANSTHHLGGAIDAEAADKTGDFLALCESFGLPVISLCDTPGFMVGPDAETQAAVRRFGRMFVLGARLTVPLGMIILRKAYGLGAMAMAGGSFRAPQFTIAWPTGEIGGMGLEGAVRLGYSKELAAAEESGDPAERQSLFDRLVAAAYEHGKALRAATTFELDDVIDPSASRAWITRLSGG
>NZ_LT703505.1|WP_172417532.1|4290853_4292389_-|AMP-binding-protein
MPPVIEIARDHNPFPTVGVSRGRDGVPRYDELPATLLDMLAEHVDTRPGSEAVVELGGGRLTYRQLWDRSARVAGGLRAEGIKRGDRVAVRYPAGIDWVLAFWGVVMAGGIAVAVNTRSAQPEVDFVLSDSGAGLDLAPDSPLPDGPPYVSEHLGRADVAALFYTSGTTGHPKGVPTTHEAFLTNTENSLRCSGFARDVGERLRTLISVPLFHVTGCNTQLLVAMRLGGTSVIMPTLNLDELITVLTTERISLMVTVPAVYALLLRHKAFAGTDVSGVRWVGYGGAPIAPSLVRAVQNAFPQATVFNGYGMTETASLATVLPHHDAVEHADSVGYAVPSVDLGVIPFDEDEPGVGELVVRGANVTGGYWNRPEANAATFTDGWLHTGDVVRVDDAGRVHLIDRLKDIINRGGENVSSVEVEAVLLAAPHVADACVLGVPDDVMGEKVGAVLFGGDDDIDVPAVLEHCRGRLADFKVPQYVTVVDTALPRNAGGKLLKARLREQVRWGDPLR
>NZ_LT703505.1|WP_042913034.1|4292449_4293259_+|thioesterase-family-protein
MPEAFFTVDGDSYVPGAMTQGPWGAAMGGQIVGGLLGWGIEQSGVDADLQPARFTVDLLRPALMSPVQIRTSVLREGRRIKLVDGELVQNGTVVARASALFLRRGDHPDGRVWSFPVEMPPLPTSSDGFPEAMPFLIWGYGATRDGSPGIAAGEWEQSDSQKFAWARIFRPMVQGHPLTPFTRLAFAGDITSSLTHWGTGGLRYINADYTVTASRLPDGEFLGLAAQSHYGTAGVATGAATLFDRHGPLGTSSALALAQPADAFKPTYA
>NZ_LT703505.1|WP_008258632.1|4293249_4293711_-|flavodoxin-family-protein
MSKTLLIVHHTPSPHTHEMFEAVVSGATDPEIEGVEVLRRPALTVSPAEMLAADGYLLGTPANLGYISGALKHAFDCSYYQLLDSTRGRPFGLYLHGNEGTEGAERAVDTITTGLGWSKAAETVVVSGKPGKEQLQACWELGATVAAQLMDYA
>NZ_LT703505.1|WP_009952956.1|4293703_4294162_-|hypothetical-protein
MTKALRTQLLVAFMCVALLVYFALLGRVAVAMIASGRAAAVGLGLAVLVMPVIGLWAMVATLRAGFAHQRLARLIAADGMELDTSDLPRRPSGRIQRDAADALFATVRTEVEDHPDDWRRWYRLARAYDYAGDRRRAREAMKTAVNLQGDHE
>NZ_LT703505.1|WP_042913037.1|4294158_4294896_-|4-hydroxy-tetrahydrodipicolinate-reductase
MRVGVLGAKGKVGSTMVAAVQAAEDLTLSAEVDAGDPLSLLTDGGTEAVIDFTHPDVVMGNLEFLIGNGIHAVVGTTGFTAERLQQVRAWLAESPKTSVLIAPNFAIGAVLSMHFARQAAPFFDSAEVIELHHPHKADAPSGTATRTAKLIAESRKGLPPNPDATSTSLPGARGADVDGIPVHSVRLAGLVAHQEILFGTEGETLSIRHDSLDRTSFVPGVLLAVRRITEHPGLTVGLEPLLNLQ
>NZ_LT703505.1|WP_042912576.1|4295000_4296359_+|HNH-endonuclease
MHSIEVPPEVSAALDALDAAAAAIRGLNFDQLDPAVRLRALERMEASRRRQIAVSHDVIAGLAREDPAALGGPVHKVIADWLRIGCGEASRRLHDATRLSPRLTLTGQELPPELPATAVAWRDGLLDGQHLRVIQSFVRDLPASTPVAKVETAERFLANEAAKLRPDQLQKLAHRYALSINPDGKFSDADRARQRGFTWCGQSPDGMSVGKLVASPELRANLDAWMSHFAAPGMCNPDDETPCVAGEPDDERVRRDLRSHAQRQHDALNALVRGQLGDPKLGQHNGLPVAVIVATTLRELTSGTGRAVTGGGTLLPMRDVIRMGRHAYHYLAVFDEHSSRPLYLGRSRRIASPDQRVVLYAQDRGCTHPGCDAPGYWCEAHHLKEWAAGGATDADNLTFACGPHHRLVEKGWRTRKNARGDTEWIPPPRLDRGVRTNDYHHPERGIGDRAGP
>NZ_LT703505.1|WP_042912578.1|4296365_4297448_-|dihydrodipicolinate-reductase
MSTAPIRVFQVGSGNVGSEMIRRIATQPDLELIGVHAYSPEKVGTDTGEFAGLGTNGVKFTGTIEEIIAAKPDVLTFHGVFPDEDLYLHVLEAGIDIVTTADWITGWHRDTNHPHPSGKPVSKLLAEACEKGGATFYGTGMNPGLNQILGVVCSADVADIENITTIESVDVSCHHSKDTWIEVGYGQPVDDPDIPSKLEKYTRVFADSVYMMADCFDLTLDEVTFSYELGACTKDVDLGWYTLPKGSLGGNYIRYQGMVDGVPRVETHLEWQMTPHTDPSWNIKGCYITQIKGDPCIYNKHMIFPKPGVDLSNPDSFASIGMTVTGMPALAAIKSVIAAPPGLITSADLPLRGFAGRFKK
>NZ_LT703505.1|WP_042912581.1|4297444_4298452_-|Rieske-2Fe-2S-domain-containing-protein
MAKPPLSMKPTGWFQVAWSDEIGVGDVHKIKYFDSEMVAWRAESGQLTVMNAYCEHLGAHLGYGGTVVGEVLQCPFHGWQWSADGRNVCIPYQDRPNRGRRMRTYPVVERNASVYIWHDVERREPYFEPPDVFAAFDDGSSADDYYPQQRLYRETLEMHPQYVLENGVDFAHFKFVHKTPIVPVFTRHDFAEPVSYVDFTITFEGDDGQKIEDVNSGVQAINGGLGIAVTKSWGMIDNRTISAITPVDERTSDVRFMVYIGRAPGGDSERAERKAAEFGQEVIRQFTQDIEIWQHQRYSDPPALAPDEYEGFTAIRQWAKQFYPEAFVSQEGLAQ
>NZ_LT703505.1|WP_008258652.1|4298573_4299224_+|TetR/AcrR-family-transcriptional-regulator
MTRQTSGAGIAGRRPNRRGHATRESMLEAALRSLASGEPGSVSANRIAKDIGATWGAVQYQFGDTDGFWAAVLHRTAERRAATFSTLSAPISPDAPLRERVGAIIDTLYTGLASADSRAIENLRAALPRDPDELERLYPRTAAELFSWGKSWLETCQQAFAGLAVDPDRVREVAALIPGAMRGLVSERQLGSYADLDMARRGLTNALAAYLEPSRP

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Crispr_ID: NZ_LT703505_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT703505_5

4881277-4881410

Orphan

Consensus_repeat	Method
GGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT703505_5

>merge|NZ_LT703505|5|4881277-4881410|CRISPRCasFinder
GGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTACCCCCGAGCGCCCACTCCTCCGCATCCCGTCCCCCTCGCCGCTGCGCGGCTGGGGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTAC

>NZ_LT703505|5|5|4881277-4881410|CRISPRCasFinder
GGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTAC	CCCCGAGCGCCCACTCCTCCGCATCCCGTCCCCCTCGCCGCTGCGCGGCTGG
GGGCGGTACCCCCGGCGCGGAATGCATCGTCGCCGGGCTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT703505.1\|WP_014712233.1\|4891365_4891677_+\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|226219
NZ_LT703505.1\|WP_008259631.1\|4877046_4878390_+\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NZ_LT703505.1\|WP_008259653.1\|4882619_4883690_-\|potassium-channel-family-protein	unknown	unknown	gnl\|CDD\|367001
NZ_LT703505.1\|WP_008259667.1\|4891683_4892538_-\|TIGR02569-family-protein	unknown	unknown	gnl\|CDD\|131620
NZ_LT703505.1\|WP_054585280.1\|4887082_4890208_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_LT703505.1\|WP_161807806.1\|4879055_4881167_-\|ATP-dependent-DNA-helicase-UvrD2	unknown	unknown	gnl\|CDD\|223288
NZ_LT703505.1\|WP_042913107.1\|4868769_4869420_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|188314
NZ_LT703505.1\|WP_042913117.1\|4892573_4893761_-\|adenylyltransferase/sulfurtransferase-MoeZ	unknown	unknown	gnl\|CDD\|181156
NZ_LT703505.1\|WP_014712227.1\|4881687_4882620_-\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_LT703505.1\|WP_054585282.1\|4883738_4887086_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_LT703505.1\|WP_014385633.1\|4869521_4870502_+\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
NZ_LT703505.1\|WP_042913116.1\|4890577_4891363_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_LT703505.1\|WP_009955776.1\|4873557_4874580_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|226011
NZ_LT703505.1\|WP_161807805.1\|4874686_4876063_+\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|227607
NZ_LT703505.1\|WP_042913109.1\|4876098_4876965_+\|cyclodehydratase	unknown	unknown	gnl\|CDD\|274832
NZ_LT703505.1\|WP_042913114.1\|4881421_4881676_+\|mycoredoxin-Mrx1	unknown	unknown	gnl\|CDD\|131255
NZ_LT703505.1\|WP_080691230.1\|4890295_4890532_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703505.1\|WP_162494288.1\|4878793_4878955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703505.1\|WP_026071234.1\|4870505_4873484_-\|UPF0182-family-protein	unknown	unknown	gnl\|CDD\|234609
NZ_LT703505.1\|WP_042913111.1\|4878399_4878651_-\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791

Protein	Function_ID	Function_description	E-value
NZ_LT703505.1\|WP_008259631.1\|4877046_4878390_+\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	3.1123e-124
NZ_LT703505.1\|WP_008259653.1\|4882619_4883690_-\|potassium-channel-family-protein	gnl\|CDD\|367001	pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.	9.10223e-24
NZ_LT703505.1\|WP_054585280.1\|4887082_4890208_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	9.21813e-72
NZ_LT703505.1\|WP_161807806.1\|4879055_4881167_-\|ATP-dependent-DNA-helicase-UvrD2	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	5.60173e-121
NZ_LT703505.1\|WP_042913107.1\|4868769_4869420_-\|HD-domain-containing-protein	gnl\|CDD\|188314	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family. Members of this protein family are known, so far, in the Ascomycota, a branch of the Fungi, and contain an HD domain (pfam01966), found typically in various metal-dependent phosphohydrolases. The only characterized member of this family, from the soil fungus Myrothecium verrucaria, is cyanamide hydratase (EC 4.2.1.69), a zinc-containing homohexamer that adds water to the fertilizer cyanamide (NCNH2), a nitrile compound, to produce urea (NH2-CO-NH2). Homologs are likely to be nitrile hydratases.	2.07454e-16
NZ_LT703505.1\|WP_042913117.1\|4892573_4893761_-\|adenylyltransferase/sulfurtransferase-MoeZ	gnl\|CDD\|181156	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated.	0
NZ_LT703505.1\|WP_008259667.1\|4891683_4892538_-\|TIGR02569-family-protein	gnl\|CDD\|131620	TIGR02569, conserved_hypothetical_protein, TIGR02569 family protein. This protein family is found, so far, only in Actinobacteria, including as least five species of Mycobacterium, three of Corynebacterium, and Nocardia farcinica, always in a single copy per genome. The function is unknown. [Hypothetical proteins, Conserved].	4.73137e-135
NZ_LT703505.1\|WP_054585282.1\|4883738_4887086_-\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.82567e-108
NZ_LT703505.1\|WP_014385633.1\|4869521_4870502_+\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.89077e-88
NZ_LT703505.1\|WP_042913116.1\|4890577_4891363_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.28646e-16
NZ_LT703505.1\|WP_009955776.1\|4873557_4874580_-\|PDZ-domain-containing-protein	gnl\|CDD\|226011	COG3480, SdrC, Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms].	2.9985e-141
NZ_LT703505.1\|WP_161807805.1\|4874686_4876063_+\|zinc-dependent-metalloprotease	gnl\|CDD\|227607	COG5282, COG5282, Uncharacterized conserved protein [Function unknown].	6.68994e-161
NZ_LT703505.1\|WP_042913109.1\|4876098_4876965_+\|cyclodehydratase	gnl\|CDD\|274832	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.	0.000510201
NZ_LT703505.1\|WP_042913114.1\|4881421_4881676_+\|mycoredoxin-Mrx1	gnl\|CDD\|131255	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.	4.87391e-42
NZ_LT703505.1\|WP_026071234.1\|4870505_4873484_-\|UPF0182-family-protein	gnl\|CDD\|234609	PRK00068, PRK00068, hypothetical protein; Validated.	0
NZ_LT703505.1\|WP_014712233.1\|4891365_4891677_+\|MGMT-family-protein	gnl\|CDD\|226219	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	6.81839e-30
NZ_LT703505.1\|WP_014712227.1\|4881687_4882620_-\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	1.62433e-124
NZ_LT703505.1\|WP_042913111.1\|4878399_4878651_-\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.08659e-14

>NZ_LT703505.1|WP_161807806.1|4879055_4881167_-|ATP-dependent-DNA-helicase-UvrD2
MPTVADPLTAGLDDEQREAVLAPRGPVCVLAGAGTGKTRTITHRIAQLVAGGHVAAGQVLAVTFTQRAAGEMRSRLRAIDAAAGMGPAVGAVSALTFHAAAHRQLRYFWPRVVGDTGWQLLDSKFAVVARAASRARLNASTDEVRDLAGEIEWAKASLIGPEEYPTAVAAAGRDIPLDAAQIAGVYAAYEALKARGEHVTLLDFDDLLLHTAAAIENDPAVAEEFRDRYRCFVVDEYQDVTPLQQRVLTAWLGDRDDLTVVGDANQTIYSFTGASPRFLLDFSRRFPDATVVRLERDYRSTPQVVSLANQVIAAARGRVAGSKLHLVGQRPPGPAPMFHEHPDEPAEAAAVAASIGRLIESGTPPSEIAVLYRVNAQSEIYEEALTEAGIAYQVRGGEGFFNRQEIKQALLALHRASERATARGAEGPLPDVVRAVLEPLGLTAQEPVGTRARERWEALSALAELVDDEVAQRPQLDFPGLLAELRMRADARHPPVVQGVALASLHAAKGLEWDAVFLVGLADGTLPISHALAHGAESEAVEEERRLLYVGITRARTHLALSWALARSPGGRQGRKPSRFLNGIAPQARAEAGPNKSRRNRATATRCRICNNNLTTPAAVMLRRCETCAADIDEDLLLRLKAWRLDVAKEQKVPAYVVFTDNTLIAIAELRPDDDEALIAIPGIGARKLEQYGPDVLELVRGR
>NZ_LT703505.1|WP_162494288.1|4878793_4878955_-|hypothetical-protein
MLSDAFGAGVARAELSAGTSHAAHAAVSAAARKHRAAAATDASVGVGGPPKAT
>NZ_LT703505.1|WP_042913111.1|4878399_4878651_-|WhiB-family-transcriptional-regulator
MSAPTAPRPHLPCHAGDPDLWFAEAPADLERAKSLCVDCPVRRQCLAAALERAEPWGVWGGEIFDRGSVLSFKRPRGRPRKAA
>NZ_LT703505.1|WP_008259631.1|4877046_4878390_+|AarF/ABC1/UbiB-kinase-family-protein
MDDGYVADIKRGRAARNAKLASIPVGFAGRAALGFGKRLTGKSRDEVQAELLEKAAHQLFTVLGELKGGAMKVGQALSVLEAAIPEEFGEPYREALTKLQKDAPPLPAAKVHRVLDAQLGTKWRERFSSFDDTPVASASIGQVHKGVWSDGREVAVKIQYPGADEALRADLKTMQRLVGVFKQLAPGADIQGVVDELIERTEMELDYRLEAENQRAFAKAYHDHPHFAVPRIVASAPKVVIQEWMQGIPMAEIIRHGTTEQRDLVGTRLLELTFDAPRRLEMLHGDAHPGNFMLLDDGRMGVIDFGAVAPLPGGLPIELGMSIRLARDKNYDLLLPTMEKAGFIQKGQQVSVRDIDDMLRQYVEPVEVEVFHYTRKWLQKMSAIEIDRSVSQIRTARQMDLPPKLVIPMRVIMSVAAILCQLDAHVPIKALSEELVPGFAEPDNAVV
>NZ_LT703505.1|WP_042913109.1|4876098_4876965_+|cyclodehydratase
MTQQCQAALSTYALDPAMPVLLRPDGAVQVGWDPRRAVLVRPPGGLAAAELATLLRTMSSPTPLPELQRRALDRGLTDTEGLRSLVAQLVRAGVATECGRPRGRAPSVRVHGRGPLSELLVESLRCSGARIAHSSQPHAAVSAGDVDLVVLSDYLVADPRMVRDLHDQGVAHLLVRVRDGIGLVGPLVIPGVTSCLGCADLHRRDRDAAWPAICAQLRETVGVADRATVLATAALALSQVNRVIAAVRGQDAASEPEPPQTLNATLEFDLHAGAIVARQWVKHPLCAC
>NZ_LT703505.1|WP_161807805.1|4874686_4876063_+|zinc-dependent-metalloprotease
MSTVGVMADLPFGFSPGEDPDKHGKKDPDSGSNPSDPFAAFGMSGDFGMGDLGQIFTQLGQMFSSAGTVGPGGTASGPVNYELARRVASNSIGFVAPVPDTTNSAIADAVHLAETWLDGATALPAGTAKAVGWTPADWVDNTLETWKRLCDPMAQQISTVWAASLPEEAKSMAGPLLQMMSQMGGMAFGSQLGQALGRLSREVLTSTDIGLPLGPKGIAAIMPDAVESFTTGLERPRSEILTFLAAREAAHHRLFSHVPWLSSQLLGAVEAYAMGMQIDMSGIEELARDFNPASLSDPAAIENLLGQGVFEPKATPAQTQALERLETLLALIEGWVQVVVAAALGDRIPGAGALGETLRRRRASGGPAEQTFATLVGLELRPRKMREAAAFWERLTQAAGVDTRDGIWQHPDLLPNAEDLDEPAGFIDRVIGGDTSGIDEAIAKLEREDPDSDGPVDN
>NZ_LT703505.1|WP_009955776.1|4873557_4874580_-|PDZ-domain-containing-protein
MNRRILTLMVALVPIVVFGVLLAVVTVPFVSLGPGPTFDTLGEVDGKQVVAIQGTLTHPTTGHLNMTTVSQRDDLTLGEALTLWLSDTEQLVPRDIIYPPGKSREEVDKANSADFKQSEDSAEYAALGYLKYPSAVTVAKVPEPGPSAGKLKAGDAIDAVNGTPVATVDAFTGLLKNTKPGQTVTIDYRRKNEPAGVAQITLGSNKDRDYGYLGVAVLDAPWAPFVVDFNLANIGGPSAGLMFSLAVVDKLTTGGLAGSNFIAGTGTITADGKVGQIGGITHKMVAAHAAGATVFLVPAKNCYEASSDNPSGLRLVKVETLSQAVDALHAITSGGQPPSC
>NZ_LT703505.1|WP_026071234.1|4870505_4873484_-|UPF0182-family-protein
MGMRPTARMPKLTRRSRILILIALGVIALLLAGPRLIDAYVDWLWFGELGYRSVFSTVLVTRFVVFLIAGLLVGGIVFAGLAVAYRTRPVFVPSNDNDPVARYRALVLSRLRLVSAGVPVAIGLLAGIIAQSYWVRIQLFLHGGDFGIKDPQFGKDLGFYAFELPFYRLLLSYLFVAVFLAFVANLLAHYIFGGIRLSGRTGALSRSARIQLVTLVGLLVLLKAVAYWLDRYELLSHTRGGKPFTGAGYTDINAVLPAKLILMAIALICAGAVFSAVVLRDLRIPAIGLVLLLLSSLIVGAGWPLIVEQISVKPNAAQKESEYISRSIAATRQAYGLTADVVTYRNYTGDAQATAQQVADDRATTSNIRLLDPTIVSPAFTQFQQGKNFYYFPDQLSIDRYLDRNGSLRDYVVAARELNPDRLIDNQRDWINRHSVYTHGNGFIASPANTVRGIANDPNQNGGYPEFLVNVVGANGNVVSDGPAPLDQPRVYYGPVISNTAADYAIVGRNGADREYDYETSNETKNYTYTGLGGVPLGDWLSRSVFAAKFAERNFLFSNVIGSNSKILFNRDPARRVEAVAPWLTTDSAVYPAIVNKRLVWIIDGYTTLDNYPYSELTSLESATADSNEVAFNRLAPDKRVSYIRNSVKATVDAYDGTVSLYQQDEQDPVLKAWMRVFPGTVKPKSDITPELAEHLRYPEDLFKVQRMLLAKYHVNDPVTFFSTSDFWDVPLDPNPTASSYQPPYYIVAKNIAKNDNSSSYQLTSAMNRFKRDYLAAYISASSDPATYGRITVLTIPGQVNGPKLANNAITTDPAVSQDLGVIGRDNQNRIRWGNLLTLPVGQGGLLYVEPVYASPGASDAASSYPRLIRVAMMYNDKIGYGPTVRDALTGLFGPGAGAAATGIQPTEAGTPANPPPSAPAPAATPGSPPPAAVPPAPDGSVALSPAKAAVLQEIQAAIGAAKDAQKKGDFAGYGAALQRLDDAITKYNNTK
>NZ_LT703505.1|WP_014385633.1|4869521_4870502_+|GlxA-family-transcriptional-regulator
MADVAHEGKHSRVVVIVVFDGVTLLDVAGAGEVFVEANRFGADYRLKIASVDGRDVTSSIGTRLGVTDCLSAIDSADIVLVAGSDHLPGRPIDPALVEAVRSVAARTGRMASICTGSFILAQAGLLDGRRATTHWHDARLLARAFRDVTVEPDAIFVRDGDVFTSAGISSGIDLALALVEMDHGTELVRDVARWLVVYLKRAGGQSQFSVLVEADPPPQSPLRAVTEAVAADPGADYSVKKLAALASLSTRQLTRLFQSELGMTPARYVELVRVDFARNALEAGRSVTETAGMAGFGSIETLRRAFVNHLGISPKAYRDRFRTAYA
>NZ_LT703505.1|WP_042913107.1|4868769_4869420_-|HD-domain-containing-protein
MTTSSIDAIAGIHVPDTALAREVTEFIRDTEDELLFNHSRRVYFFGALQGLRRGVQPNLELLYVAAMFHDVGLTEHYRNSTVRFEVDGANAARDFLMDAGADQADADTVWLGIALHTTPGVPEFLAPEVALLQAGVEVDVVGVGREQLAPEALAAVTAAHPRPQFKQRILAAFNDGMKHRPRTTDGTMNADVLAHFDPTFGRVDFVDKILHNSWPE
>NZ_LT703505.1|WP_042913114.1|4881421_4881676_+|mycoredoxin-Mrx1
MTTAPLTVYTTSWCGYCHRLMTVLKSNGIPYEAVDIEHDAAAADFVSSVNGGNRTVPTVKFADGSTLTNPSAAQVKAKLTETGS
>NZ_LT703505.1|WP_014712227.1|4881687_4882620_-|NAD(+)-diphosphatase
MAIADFQLRSVPLLSRVGADRADQLRTDVEAATAGWADAALLRVDSRNQVLVSDGRVVLGAAAELGDKPPSEAVFLGRLEGGRHVWAIRGALQAPEDPDARTEVVNLRSLGPIFDDTSGQLMSSAVALLNWHEKSRFSSVDGSPTRPARAGWSRVNPVTGHEEFPRIDPAVICLVHDGGDRAVLARQAVWPERMFSLLAGFVEAGESFEGCVAREIREEIGLTVRDVRYLGSQPWPFPRSLMVGFHAVGDPAQDFSFNDGEIAEAAWFTRDEVREALAAGDWSSSSESKLLLPGSISIARVIIESWAAID
>NZ_LT703505.1|WP_008259653.1|4882619_4883690_-|potassium-channel-family-protein
MGNGRSRKLSGLDETLTAQRGHQLIGVVRIPEEHASPIRVITRRLAIALVVLFGAAVIVYLDRDGFRDVRNEPLTFLDCLYFSAVSLSTTGYGDITPYTETARLVHTLIFTALRIAFLAVLVGTTLEVLSERSRQGWKIQRWRSRVRNHTIVIGYGTKGKTAVAAILGDETIQAEVVVVDTDRSTLEHAESAGLVTVHGDATKADVLRLAGAQHAASIIVATSRDDTAVLATLTAREIAPNAKIVASIREAENQHLLQQSGADSVVVSSATAGRLLGLATTTPSVVEMIEDLLTPDAGLAIAEREVEQSEVGGSPRHLRDIVLGVVRDGHLWRIDAPEVDAVEANDRLLYIRSVGH
>NZ_LT703505.1|WP_054585282.1|4883738_4887086_-|ATP-dependent-helicase
MNARYNPSELACALGLFPPTEEQSAVIAAPPGPLVVIAGAGAGKTETMAARVVWLIANGYAEPAQVLGLTFTRKAAGQLLRRVRSRLARLAGVGLGPVGDAAAEPEGAPVISTYHAFAGSLLRDYGLLLPVEPDTRLLSETELWQLAFDVVNGYRGELHTDKTPAAVTSMVLRLWGQLAEHLVDTGQLRDTHVELERLVHGLPAGPYQRERGPSQWLLRLLGTQTERAELVPLLDALDERMRAEKVMDFGMQMASAARLAAGFPQVGADLRARYRVVLLDEYQDTGHAQRIALSALFGGGVDDGLALTAVGDPIQSIYGWRGASATNLPRFTTDFPRSDGTPAPVLELRTSWRNPPQTLRVANAVSAEARRRSVAVHALRPRPDAPPGTVRCALLPDVVAEREWIADHLDAHYRRARAEGVSPPTAAVLVRRNADAAPIADALRARGIPVEVVGLAGLLSVPEVAEVVAMLRLVADPTAGAAAMRVLTGARWRLGARDIAALWQRARALGGTAADPAPPSPEAIARAADPSHVDADTVCLADAIADPGPAGAYSAAGYQRITALGAELSALRAHLGHPLADLVAEVRRVLGVDCEVRAAAGVAAGWAGTEHLDAFADVVAGYAERADGAATRLDASATASVAGLLGFLDAAETVENGLAPAPLAVARDRVQVLTVHSAKGLEWQVVAVAHLSGGTFPSTASRSTWLTDAAELPPLLRGDRAAAGALGIPVLDTSDVTNRKQLSDKISEHRRQLDQRRVDEERRLLYVAITRAEDTLLVSGHHWGATGVKPRGPSDFLVEIKDVIDRAAVAGDPCGTVEHWAPSPADGERNPLRDNVIEAVWPADPLAVRRDEVERGAALVRRALAAGPGRPCADVDGWAGDVDALLAERARLIEPPVRALPGQLSVSSLVGLARDPAGAAQRLRHRLPSRPDPHALLGNAFHSWVQKFYGAECLFDLGDLPGAADSDVGDSAELAALQTAFTESPWAARTPVAVEAPFEMPIGETLVRGRIDAVFADPDGGATVVDWKTGEPPHGAEALRQAAVQLAVYRMAWAALAGVAESAVRTAFYYVRAGTTVVPDELPSAAELAGLLTDPDGTRCDPRRPSIGEAVPVVT
>NZ_LT703505.1|WP_054585280.1|4887082_4890208_-|ATP-dependent-helicase
MAHTWEADASAVLAPGARGIVRVLGGPGTGKSSLLIDAAVAGIDAGIDPESVLLLTGSGRLGMAERSALTTALLRSRPGRVAVSEPLVRTVHGYAYAVLRRAAERAGDAPPRLVTSAEQDAIIRELLAGDLDDGARATSAWPAQLRPALSTAGFATELRNLLARCAERGIDPGELERLGRHCRRPEWIAAGQFARQYEQVMLLRAAVGTAAPEATTPALGAAELVGAALEAFAVDPELLAAERGRIRVLLVDDAQQLDPQAARLVRVLAAGAELALIAGDPNQAVFGFRGGEPAGLLDGDGPAVTLTTSHRCAPAVARAVSGIAARLPGGGAGRRIDGAGAGEGSVTVRLAASAHAEAAAIADALRRAHLVDGVPWSQMAVIVRSVPRAGARLPRALAAAGVPVAAAAATGPLAEEPAVRALLTVLLAAADGLDGQQALALLTGPIGRVDPVSLRQLRRTLQRANPDRPPGDFAELLVETLSGAVPPGPQFRSLRKVRAVLDAAARCHEAGEDPRYTLWDAWHRSGLQRRWLSVSERGGPAAAQATRDLESVTALFDITDDYVSRTSGASLRGLVEHVAALHLPNANLEPAATAGQVRVLSAHAAMGHEWDFVVIAGLQDGLWPNTVPRGGVLGTQRLLDELDGVTADASMRAPLVAEERRLLVAAMGRARRRLLVTAVDSDTGGADHAAALPSPFFFDIAQWADEDVETTALQPVSAPRVLSAAALVGRLRGVVCAPDGAVDELARDCAATQLARLAKAGVPGADPAGWHGLTPVSTGEPLRGGGDVVTLTPSTLQTLTDCPLRWLAERHGGTNPRDLRSTIGSVVHALIAEPRRSESELLAGLERAWQHLPFAAQWHSDNELARHRAMLEAFVEWRSQSRGALTEVGVEVEIDGTLQTGDGEQVRLRGRVDRLERDAAGRLVIVDVKTGKSPVSKDDAQQHAQLAMYQLAVAEGLVAAGGDTVEPGGARLVYVGKAGAAGAVEREQDPLTADAGDEWRQVIRRAAAATAGPQFVARRNDGCTHCPIRPCCPAHTDGAAR
>NZ_LT703505.1|WP_080691230.1|4890295_4890532_+|hypothetical-protein
MVSRLQKEGLTTMTDEHGFPTDEAPEGDAVEQLRPADSDDDAGLDTDYVSARDREANEADVIEQAYVVSADDERDDDR
>NZ_LT703505.1|WP_042913116.1|4890577_4891363_+|alpha/beta-hydrolase
MTAKLYVHRYGPSGPARILALHGLTGHGQRWQHLSGLLPEIGLAAPDLLGHGRSSWAAPWTIDANVSALAALLDAQAGTPVVVVGHSFGAGLAMHLAAARPNQVSGLLLLDPAIGLDGAWMREIAEAMLSSPDYPDAEEARLEKVHGSWSDVEPALLEAELDEHLVALPNGRYGWRISLPAMMAYWSELARDAVLPPAQTPTILVRAKRTSPPYVTDELIAGLAQRLGSRFRLLDFDCNHMVPYAKPDGVAALARELLGAR
>NZ_LT703505.1|WP_014712233.1|4891365_4891677_+|MGMT-family-protein
MAPVTDDQVERVRALVAAIPSGRVATYGDIASVAGLSSPRIVGWIMRTDSSDLPWHRVITASGRPARHLTTRQLELLRAEGVLARDGRIALREVRYEFPDGVL
>NZ_LT703505.1|WP_008259667.1|4891683_4892538_-|TIGR02569-family-protein
MTVEPPPDHVLSAFGLAGVKPVYLGASWEGGWRCGEVVLSLVADNARAAWSARVRETLFVDGVRLARPVRSTDGRYVVSGWRADTFVAGTPEPRHDEVVSAAVRLHEATGKLERPRFLTQGPAAPWGDVDIFIAADRAAWEERPLASVPPGARVAPATADAERSVELLNQLATLRKPTKSPNQLVHGDLYGTVLFVGTAAPGITDITPYWRPASWAAGVAVIDALSWGEADDGLIERWNALPEWPQMLLRALMFRLAVHALHPRSTAEAFPGLARTAALVRLVL
>NZ_LT703505.1|WP_042913117.1|4892573_4893761_-|adenylyltransferase/sulfurtransferase-MoeZ
MLSVSSLPPLVAPADHLTGDEVARYSRHLIIPGLGVDGQKRLKNARVLVIGAGGLGAPTLLYLAAAGVGTIGIVEFDVVEESNLHRQIIHGVADVGRPKAVSARESMLAINPLVDVRLHEVRLDSTNAVELFGCYDLIVDGTDNFATRYLINDAAVLAKKPYVWGSIYQFEGQISVCWEDAPDGRGLNYRDLYPEPPPPGTVPSCAEGGVLGIVCASIASVMSTEVIKLITGIGDSLLGRLMIYDALQMTYRTIAIRRDPSDASRPKITELVDYEQLCGAAADTPVGDATTITPRELRELLDSGKELALIDVREPVEFDIVHIDGAQLVPQSSINSGEGLAKLPRDRMPVLYCKTGVRSAQALAVLKQAGFADAVHLEGGIVAWAQQMQPDMILY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

273015 : 342625

Rhodococcus_phage(20.0%)

transposase,integrase

attL 329402:329461|attR 350990:352509

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042910414.1\|273015_274221_-\|integrase	site-specific integrase	G9FGY1	Rhodococcus_phage	2.9e-113	54.6
WP_042910415.1\|274258_274459_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_142383088.1\|275371_275743_+	hypothetical protein	NA	NA	NA	NA
WP_154074405.1\|276169_276316_-	hypothetical protein	NA	NA	NA	NA
WP_142383282.1\|277300_278068_+	chemotaxis protein	NA	NA	NA	NA
WP_142383090.1\|278064_278787_+	hypothetical protein	NA	NA	NA	NA
WP_051445816.1\|278783_284621_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_051445817.1\|284898_285384_+	hypothetical protein	NA	NA	NA	NA
WP_142383091.1\|285655_285892_+	hypothetical protein	NA	NA	NA	NA
WP_042910451.1\|286551_286734_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_042910419.1\|286837_287842_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJP1	Virus_Rctr41k	2.2e-05	26.6
WP_042910420.1\|288018_288579_-	RES domain-containing protein	NA	NA	NA	NA
WP_042910421.1\|288575_288917_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_042910422.1\|292364_292997_-	CAP domain-containing protein	NA	NA	NA	NA
WP_042910423.1\|293358_294018_-	hypothetical protein	NA	NA	NA	NA
WP_051445819.1\|294014_294692_-	hypothetical protein	NA	NA	NA	NA
WP_054585687.1\|294695_296150_-	MCE family protein	NA	NA	NA	NA
WP_042910424.1\|296151_297291_-	MCE family protein	NA	NA	NA	NA
WP_042910425.1\|297287_298619_-	MCE family protein	NA	NA	NA	NA
WP_051445822.1\|298615_299875_-	MCE family protein	NA	NA	NA	NA
WP_042910426.1\|299871_300900_-	MCE family protein	NA	NA	NA	NA
WP_054585688.1\|300957_302301_-	MCE family protein	NA	NA	NA	NA
WP_054585689.1\|302305_303163_-	ABC transporter permease	NA	NA	NA	NA
WP_042910429.1\|303159_303966_-	ABC transporter permease	NA	NA	NA	NA
WP_101930933.1\|305529_306252_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.4e-46	43.3
WP_042910430.1\|308243_308816_-	protocatechuate 3,4-dioxygenase subunit alpha	NA	NA	NA	NA
WP_042910456.1\|309648_310428_+	IclR family transcriptional regulator	NA	NA	NA	NA
WP_042910432.1\|311026_311938_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_042910433.1\|312201_313122_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_042910434.1\|313182_314316_+	epoxide hydrolase	NA	NA	NA	NA
WP_051445821.1\|314980_316324_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_042910435.1\|316320_316863_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_042910437.1\|316968_318000_+	2,3-butanediol dehydrogenase	NA	NA	NA	NA
WP_087139621.1\|318054_319308_+	CoA transferase	NA	NA	NA	NA
WP_042910439.1\|319304_320471_+	transporter	NA	NA	NA	NA
WP_042910440.1\|320507_320951_+	OB-fold domain-containing protein	NA	NA	NA	NA
WP_042910459.1\|320943_321999_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA
WP_042910177.1\|322210_323620_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_042910179.1\|323640_324177_+	3-phenylpropionate/cinnamic acid dioxygenase subunit beta	NA	NA	NA	NA
WP_042910181.1\|324272_324713_+	cupin domain-containing protein	NA	NA	NA	NA
WP_042910183.1\|324803_325691_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_054585743.1\|325853_326387_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_042910184.1\|326522_327266_+	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_101930916.1\|328410_329445_+\|transposase	IS481 family transposase	NA	NA	NA	NA
329402:329461	attL	NA	NA	NA	NA
WP_080691087.1\|329719_330823_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_080691110.1\|330897_331101_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080691111.1\|331275_332118_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_042910185.1\|333261_334161_+	alpha/beta fold hydrolase	A0A0A7RWQ4	Mycobacterium_phage	4.5e-10	37.2
WP_087139801.1\|334172_335480_+	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_042910186.1\|335482_335998_+	aromatic-ring-hydroxylating dioxygenase subunit beta	NA	NA	NA	NA
WP_042910187.1\|336034_337267_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_054585634.1\|337315_338260_+	extradiol ring-cleavage dioxygenase	NA	NA	NA	NA
WP_042910189.1\|338554_338950_+	DUF732 domain-containing protein	NA	NA	NA	NA
WP_042910040.1\|339479_340544_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_080691086.1\|341953_342625_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	1.6e-15	33.1
350990:352509	attR	NA	NA	NA	NA

DBSCAN-SWA_2

908691 : 943355

Staphylococcus_phage(50.0%)

transposase,integrase

attL 902063:902078|attR 929167:929182

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
902063:902078	attL	NA	NA	NA	NA
WP_101930856.1\|908691_909324_-\|transposase	transposase	NA	NA	NA	NA
WP_007172184.1\|909500_909971_-	hypothetical protein	NA	NA	NA	NA
WP_007172185.1\|909967_912169_-	hypothetical protein	NA	NA	NA	NA
WP_007172186.1\|912165_913890_-	hypothetical protein	NA	NA	NA	NA
WP_162839945.1\|913889_915359_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_007172195.1\|919138_919465_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_007172196.1\|920313_920934_+	hypothetical protein	NA	NA	NA	NA
WP_040624304.1\|920934_921969_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	7.0e-31	31.5
WP_087139632.1\|922219_923367_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.2e-32	32.4
WP_033717415.1\|924488_925088_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_101930920.1\|925516_926128_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_007172201.1\|926203_926650_+	hypothetical protein	NA	NA	NA	NA
WP_042910691.1\|926764_927661_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_170320644.1\|927657_930744_-	MMPL family transporter	NA	NA	NA	NA
929167:929182	attR	NA	NA	NA	NA
WP_007172204.1\|931548_932190_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_046187034.1\|932642_935576_-	MMPL family transporter	NA	NA	NA	NA
WP_042909907.1\|935572_935983_-	membrane protein	NA	NA	NA	NA
WP_007172294.1\|936087_937281_-	cytochrome P450	NA	NA	NA	NA
WP_007172295.1\|937346_937928_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_033717424.1\|938573_939197_-	hypothetical protein	NA	NA	NA	NA
WP_087139652.1\|939181_939793_-	hypothetical protein	NA	NA	NA	NA
WP_101930934.1\|940434_941688_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	6.1e-29	31.1
WP_075630243.1\|942119_943355_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.7e-84	45.2

DBSCAN-SWA_3

967296 : 1026824

Staphylococcus_phage(60.0%)

transposase,integrase

attL 986826:986842|attR 1032428:1032444

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008256196.1\|967296_968370_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_033711234.1\|968756_969083_-	hypothetical protein	NA	NA	NA	NA
WP_007168405.1\|972227_973100_+	MaoC family dehydratase N-terminal domain-containing protein	NA	NA	NA	NA
WP_007168406.1\|973252_973528_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_007168407.1\|973527_973920_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_007168413.1\|978985_979939_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_172417559.1\|979935_981501_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_170826078.1\|982471_983374_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_007168420.1\|983675_984419_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_042909893.1\|984516_985365_+	CoA transferase	NA	NA	NA	NA
WP_019732177.1\|985361_986537_+	thiolase family protein	NA	NA	NA	NA
WP_007168424.1\|986546_988223_+	long-chain-fatty-acid--CoA ligase	NA	NA	NA	NA
986826:986842	attL	NA	NA	NA	NA
WP_007168425.1\|988219_988996_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_007168426.1\|989003_990152_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_007168427.1\|990177_990936_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_046184758.1\|991923_993276_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	6.3e-32	34.6
WP_007168431.1\|993903_994230_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042909891.1\|996812_998048_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-84	45.2
WP_007168435.1\|998899_999418_-	hypothetical protein	NA	NA	NA	NA
WP_101930905.1\|999486_1000581_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_007168437.1\|1001972_1003139_-\|integrase	tyrosine-type recombinase/integrase	A0A2K9VF00	Mycobacterium_phage	1.6e-07	29.1
WP_007168443.1\|1005993_1006425_+	hypothetical protein	NA	NA	NA	NA
WP_007168449.1\|1009065_1010694_+	long-chain fatty acid--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	6.7e-28	25.3
WP_007168450.1\|1010746_1011688_+	R2-like ligand-binding oxidase	NA	NA	NA	NA
WP_007168451.1\|1011894_1012320_+	OB-fold domain-containing protein	NA	NA	NA	NA
WP_101930904.1\|1012337_1013462_+	thiolase family protein	NA	NA	NA	NA
WP_007168453.1\|1013528_1014422_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_007168454.1\|1014452_1016072_+	acyl--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.1e-30	28.1
WP_050790029.1\|1016319_1017441_+	acyl-CoA/acyl-ACP dehydrogenase	NA	NA	NA	NA
WP_007168458.1\|1019115_1020333_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_074021181.1\|1020859_1021357_-	ATP-binding protein	NA	NA	NA	NA
WP_007168461.1\|1021464_1022871_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_007168462.1\|1022917_1023064_-	hypothetical protein	NA	NA	NA	NA
WP_007168467.1\|1025193_1025520_-	ferredoxin family protein	NA	NA	NA	NA
WP_007168468.1\|1025868_1026147_+\|transposase	transposase	NA	NA	NA	NA
WP_154074411.1\|1026143_1026299_+	hypothetical protein	NA	NA	NA	NA
WP_007168470.1\|1026374_1026824_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
1032428:1032444	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2053278 : 2109845

Tupanvirus(66.67%)

transposase,integrase

attL 2053999:2054058|attR 2116261:2117614

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_080691159.1\|2053278_2053944_+\|transposase	TnsA-like heteromeric transposase endonuclease subunit	NA	NA	NA	NA
2053999:2054058	attL	NA	NA	NA	NA
WP_087139680.1\|2054052_2055322_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	3.7e-50	41.7
WP_042911237.1\|2055351_2057466_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_080691160.1\|2057471_2058641_+	AAA family ATPase	NA	NA	NA	NA
WP_158090653.1\|2058779_2061257_+	TniQ family protein	NA	NA	NA	NA
WP_069953761.1\|2064693_2065506_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.8e-32	33.1
WP_042909843.1\|2066470_2066758_-	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_046182709.1\|2066754_2069220_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_042909842.1\|2069216_2070440_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_157679854.1\|2071551_2073351_-	TniQ family protein	NA	NA	NA	NA
WP_042911243.1\|2073528_2073789_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042911244.1\|2074209_2074797_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_142383138.1\|2075115_2075547_-	hypothetical protein	NA	NA	NA	NA
WP_142383139.1\|2075577_2075955_-	hypothetical protein	NA	NA	NA	NA
WP_080691161.1\|2075917_2076793_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_042911246.1\|2077254_2080254_-	nocobactin polyketide synthase NbtC	NA	NA	NA	NA
WP_042911247.1\|2080250_2081552_-	polyketide synthase	NA	NA	NA	NA
WP_042911248.1\|2081548_2082283_-	thioesterase	NA	NA	NA	NA
WP_087139839.1\|2082279_2082753_-	acetyltransferase	NA	NA	NA	NA
WP_042911250.1\|2082938_2087927_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.5e-94	26.7
WP_087139684.1\|2087908_2092387_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	3.1e-35	23.6
WP_042911252.1\|2092410_2095863_+	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	4.6e-34	23.6
WP_080691156.1\|2095863_2097252_-	SagB family peptide dehydrogenase	NA	NA	NA	NA
WP_080691157.1\|2099334_2103375_-	non-ribosomal peptide synthetase	A0A2K9L3I8	Tupanvirus	1.5e-41	24.6
WP_051445860.1\|2105729_2106473_-	hypothetical protein	NA	NA	NA	NA
WP_072501249.1\|2107386_2107767_-	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_042909842.1\|2108621_2109845_+\|integrase	site-specific integrase	NA	NA	NA	NA
2116261:2117614	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4607720 : 4614296

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172417591.1\|4607720_4609838_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	3.2e-208	51.6
WP_008259183.1\|4609855_4610308_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	5.8e-14	40.2
WP_008259184.1\|4610339_4610579_-	redoxin NrdH	V5UN81	Mycobacterium_phage	1.3e-20	63.2
WP_008259185.1\|4611107_4611662_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.2e-05	34.4
WP_008259186.1\|4611753_4612368_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_008259187.1\|4612376_4613420_+	DNA polymerase IV	F1C5A5	Cronobacter_phage	3.9e-21	29.1
WP_008259188.1\|4613354_4614296_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.2e-05	28.8

DBSCAN-SWA_6

5172044 : 5180690

Burkholderia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014385777.1\|5172044_5173571_+	cyclic nucleotide-binding domain-containing protein	W8CYF6	Bacillus_phage	1.3e-12	37.4
WP_042913325.1\|5173610_5174450_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_042913327.1\|5174446_5175313_+	LLM class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_008260499.1\|5175340_5176336_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.8e-75	46.5
WP_042913511.1\|5176337_5176955_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-27	38.8
WP_042913329.1\|5177154_5178276_+	acyltransferase	A9YX16	Burkholderia_phage	2.9e-14	27.7
WP_042913331.1\|5178405_5179542_+	acyltransferase	A9YX16	Burkholderia_phage	2.6e-18	28.0
WP_042913512.1\|5179601_5180690_+	acyltransferase	A9YX16	Burkholderia_phage	1.3e-16	29.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_LT703506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT703506_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT703506_1

240724-240827

orTypeII

Consensus_repeat	Method
TGGTACGCCGCCAGGGACTTGAACCC	CRISPRCasFinder

1 spacers

Cas9_archaeal

The CRISPR arrays of NZ_LT703506_1

>merge|NZ_LT703506|1|240724-240827|CRISPRCasFinder
TGGCACGGACGGAGGGACTTGAACCCCCAACCGGCGGTTTTGGAGACCGCTGCTCTACCAGTTGAGCTACATCCGTATGGAGCGGCCGGCGGGAATTGAACCCG

>NZ_LT703506|1|1|240724-240827|CRISPRCasFinder
TGGCACGGACGGAGGGACTTGAACCC	CCAACCGGCGGTTTTGGAGACCGCTGCTCTACCAGTTGAGCTACATCCGTA
TGGAGCGGCCGGCGGGAATTGAACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT703506.1\|WP_084259980.1\|246090_246942_-\|DUF2637-domain-containing-protein	unknown	unknown	gnl\|CDD\|378511
NZ_LT703506.1\|WP_170926720.1\|248079_249309_-\|PPE-domain-containing-protein	unknown	unknown	gnl\|CDD\|366325
NZ_LT703506.1\|WP_139809023.1\|232729_232942_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_139809017.1\|234063_234498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259962.1\|247694_248015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259958.1\|243113_243299_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259957.1\|239940_240435_-\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|224321
NZ_LT703506.1\|WP_139809021.1\|249452_249749_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_139809020.1\|241560_241842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259979.1\|241962_243117_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_LT703506.1\|WP_139809019.1\|237136_237844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_139809018.1\|236918_237140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259961.1\|247304_247664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259959.1\|243488_243941_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259953.1\|235423_235744_-\|DUF4031-domain-containing-protein	unknown	unknown	gnl\|CDD\|379076
NZ_LT703506.1\|WP_084259955.1\|236629_236851_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259960.1\|244067_246038_-\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|366295
NZ_LT703506.1\|WP_084259952.1\|234893_235388_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381594
NZ_LT703506.1\|WP_084259954.1\|236245_236467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_087140096.1\|232997_233729_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT703506.1\|WP_084259980.1\|246090_246942_-\|DUF2637-domain-containing-protein	gnl\|CDD\|378511	pfam10935, DUF2637, Protein of unknown function (DUF2637). This family of proteins has no known function.	0.00149565
NZ_LT703506.1\|WP_084259953.1\|235423_235744_-\|DUF4031-domain-containing-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	1.9317e-27
NZ_LT703506.1\|WP_170926720.1\|248079_249309_-\|PPE-domain-containing-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.34781e-19
NZ_LT703506.1\|WP_084259957.1\|239940_240435_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	5.07102e-23
NZ_LT703506.1\|WP_084259952.1\|234893_235388_-\|hypothetical-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	0.00957647
NZ_LT703506.1\|WP_084259979.1\|241962_243117_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	4.4696e-05
NZ_LT703506.1\|WP_084259960.1\|244067_246038_-\|RNB-domain-containing-ribonuclease	gnl\|CDD\|366295	pfam00773, RNB, RNB domain. This domain is the catalytic domain of ribonuclease II.	4.68183e-55

>NZ_LT703506.1|WP_084259957.1|239940_240435_-|HNH-endonuclease
MRHFHHLRNRQQSVAVYNADYRVLTHVTWQEAIRLLLRGAVYVIERHSPAVHIHSPSTVIELPMSVALREYVHVPYRPGNRVTRDGVLQRDSYTCAYCGSHGDTLDHVIPESRGGQNTWDNLVTACAACNGRKGNRTPAEAGMRLRWEPYEPRERDRYQVPAMA
>NZ_LT703506.1|WP_139809019.1|237136_237844_+|hypothetical-protein
MTIPVTLHPDAERRAELLMSRYATLTEGNPGFHYHWHMRALEHGAADADSVTEALVEGGDRLEDLRRLVSDDQTYQMWRVRLEHPNWWIGTRVRSTTSLLAQIISELTQDQGTGFHAGISGYPGAHWFTQTKEAIQPLSEPSKEILAATLHRELQGRQFCMAAKLFDDIDASAVFPESESDTAFDGADLTEAIAAIEAVHGAAWADAFKTMLEDLDPITWPGLAESLVTERRTVR
>NZ_LT703506.1|WP_139809018.1|236918_237140_+|hypothetical-protein
MDELARDAAKLRELEQQVEDLRDSIRVRVRAELRSGTPQVELVKRTGWTRETIRKIERRGSNLRTSTRKRENP
>NZ_LT703506.1|WP_084259955.1|236629_236851_-|hypothetical-protein
MSEVVVIDGNPYNPRFPGVRHSGNHSVHTAGHRDTSDVYRGYYDPTCGWCWLGASHTDHAHRVKIERSRSDGH
>NZ_LT703506.1|WP_084259954.1|236245_236467_-|hypothetical-protein
MAKTSSKTRERVTHPDRKDSGVVVDDKAPAWTPNELTVDPPAPGMVKVRWRDSVDPNQLYWEYADELRPMPVR
>NZ_LT703506.1|WP_084259953.1|235423_235744_-|DUF4031-domain-containing-protein
MTVYVDDMRLPARVGRIEARWSHLMADTDAELHAFAASIGLRRSWAQYPGTWKSHYDVTDSKRAQAIRAGAVPIGYGSPESIALTRRKRQHQPPTPQLTLPLNEVH
>NZ_LT703506.1|WP_084259952.1|234893_235388_-|hypothetical-protein
MTEIQKEHRPALIRAGLAAAGVPEEQAELFSPLTDDILVTESGWNPDAVALAVDSSFRGPAALFGTDTARVMADGHSYATPRGVAQLTPWMFEQYQADGTSTDIYDPVASIAALWRFIADHFDVDLKTGAGVTEFREKWFDHRPDWWWLTELAPFNKSPRIPGY
>NZ_LT703506.1|WP_139809017.1|234063_234498_-|hypothetical-protein
MANPDASQQCDTPRHVVPVARLERIEPDLDGVVSRLFWRRGFDPEVAWRIAVSGDTAARMAGTHLEEECTATAELLARAAAFGWWPKKLNGDYVAVPLEQWVAEGHPFTQIVPNAEAMLDRWGIQSVVVDAVANDHPPDARGIQ
>NZ_LT703506.1|WP_087140096.1|232997_233729_+|hypothetical-protein
MEREERCAQVADLVVPVKDHELGKQGAWADELISADENERDTYLRWLLRYDDASDGPWDGDPVLEALDRAAAQIQGLQELVYELVAYARELPPGGRKYTLEQLAVAARMSVSGVRSCYTVGDISSAAGKLVIGAGKRGARGDRRWESARVWRWQCPSQAMEDALDKLVADGEAVAAPPDELHAGEPDSAYAVVEAFSTSERAYLLPNTTLNELLGEELSRRPGLGGAPLRRARRVPDPDQPPF
>NZ_LT703506.1|WP_139809023.1|232729_232942_+|hypothetical-protein
MDLTDIALLWGVDPATVRKYHQHGRLPPEDAKTGLREDGKPRYGWLRETVAAFERPGQGARTDLQPTEPE
>NZ_LT703506.1|WP_139809020.1|241560_241842_-|hypothetical-protein
MTMIRRDYYALAGMHRTSSAALSCANLTSQNVPSWTIQAERHDAVSQPSRFRLSRHEQTSAPSVGVRPDRKLGPEEQSHKSLIFGVCAARNVG
>NZ_LT703506.1|WP_084259979.1|241962_243117_+|MarR-family-transcriptional-regulator
MSTVTDRVCGVPLFTPSVMDGAVLDALTVGSEEVLNTLVVRIRAAVREGSRPHTLLVAPTGAGKTHILRVALHRTFGDSATDGAVLPVVLPESGLGIGRYSDLLVEIARVIDPMLLEQAKLLRGRGDPVGIEELIIHAGAGRMVLLVVENLDRVFRGLGAAGQGSLRAWVETSGAVLVVASTPALFEGVSSRMFPWYGSFIVEKLPGLSIDDAVTVIERGARRRGIRDLEEFVISPRGRSAVAEVWRRVGVAPRVWHLLAGLVDAQDLAAVEPAIEVLLDRLVEYYRPRLWGLPGGEQRLVTELARGEGARTVAELAAAVGVSSQSASVALRRLAAGRWVVSSKRGDDQRQSWYDLTDPLVREFVQYRQRGFIWSDARSAAPED
>NZ_LT703506.1|WP_084259958.1|243113_243299_-|hypothetical-protein
MADGYWVISVDRETGRATTSELITDTDQAWQLSLDLQDPATYTTVVSRRIPPPTPGRQVRN
>NZ_LT703506.1|WP_084259959.1|243488_243941_-|hypothetical-protein
MTRGKQIRIGKQVRTIPAANATRFDEIEHTLRQLYPAPEHANEYQAAITAAATYLIDAPEPPSPWTIRSASRGNDNSATIVDRWKTQLDAIIAPYAQQLHQARAELDAATAAARTLATLATDDGLTEPATAERFDVDRLTLRKWRGKKDR
>NZ_LT703506.1|WP_084259960.1|244067_246038_-|RNB-domain-containing-ribonuclease
MIDQSRTTTGNGAPEPLSQWDAAGRAVMIDDPATRDLDDALFVTESPNGGWTATVHIAATAATITPETPTDRHARSRIQSKYLRNKTIPMLGQSAEQQATLSETHDRPALTVAMTFDRTATLTTASVTRNQLPAGSCVRLAYGSVPTILEDPTHPLHHTMAASQHLAKALLARRTAAGALVLYDLIRGYALTEDGTIARIPTQQRTVGYVIVAELMIAASAALAEWCIDEDLTILFRNHRTRLLGGDGTELATDIAASLHDPELFEQLRSRVHRTFGRAQYATTPRGHHGLRVAAYAHVTSPLRRYADLVSQRNIWDHLAGEPPSYDRATLDEIATEINTAADTQKRSTEAHFKHQSRKEGAQHILNGDYANLDQKQWRKMFDLMTKTAPAAGIEAELNRRLSDDQLSPNDLTRVAAAGPAWIHIRKRLFRAARHKHPEFGPSIVSGRAQLLGEPQPETEVLLAPDRPVHIPLFAIRARVGDNLGAWQIRETKKAAHTQAMWELLDILCEHTTPHDQPPAWPSAGATNQPTDIPTTEHRQITTTLPDTALRHLASLTSGKRSNAFANPVGWLTSFATTQHLGTVEYHYDTRGPSHEPLFTCTARIADLKSAATSPAKKQARVATATRLITALFAAADDLPKPGAEGHPQASDEPST
>NZ_LT703506.1|WP_084259980.1|246090_246942_-|DUF2637-domain-containing-protein
MSTTVNPDARKAQRFFWCWLIAATAASITGNVSHALLATSTGNSTANPIVAAALAVVPPVVQVGATHGVHVLVNARITGAAYRTALAITVALVVFAFVLSFEALRELAIVYAGMNPTTAWLWPLVIDLSITGSTVSLLALTRAHRNATMNAAAEEQHAPTHLETPYEIPSDTAEAGNPAPTPVPTLAAITTSSPTPETPAALAATERVASTTPEPEEAWAGELRNAEHIVNEGFTRIGRTKVAQVLHAHREGTPPGTIARKLNVGYRTVVRILDHHTTQPAPV
>NZ_LT703506.1|WP_084259961.1|247304_247664_-|hypothetical-protein
MSEGKNNQAITAANFDALRGVSQQLTTALEALEGHRKQLVDIKAAARAEASVGSKTGSPAPILSPLLTSMDTAIAKVDTAIAAFKNNVGADAAALSKLADDLEDATRRGAQQATQAANG
>NZ_LT703506.1|WP_084259962.1|247694_248015_-|hypothetical-protein
MGSGEPRKYGWLIAPAATTVIWFVGAYIPALSNIWVTLNVLVPAGQPRRVTFPLAYPPVGIDGHTIASLFGLLLIIGAATRWISYLELFTPTPPDAAPAPASPPNT
>NZ_LT703506.1|WP_170926720.1|248079_249309_-|PPE-domain-containing-protein
MVPSEPWVAYLPEFNAIRRELGPGAATWLASGSMWSTLASMVAEAAAAFAAELAAVGINWQGLSQIQLAGAVPPFMAWLGLAEGVAAANALAAYAVAEADAIARGTMIPTALVSQNRISELIAEATNFFGINSGLIAFLNGQYAGYWTDNAATMLTYDEAVQLATVPKPISPPPPLANALAAAAQGAESTALAAANQGAQAGTQAATQAAQQPASTAAQAPASAGTEMVSTLLGSGGQLLSAPTQALGSGGSSLTEPLNSIMQPFQSLLGQFGGSTQDAGAFIAGPPSSAFPGANAAFTGNPVGGSTTGGGGVPFATGGGIPAGSMLANAYPHGNLSSVKSQDVFTGVPSRGPVNAANFGPGAMPAGGGMAPMMHGPGNNGSSTRRESDAVLVANVAPAGPAMDDPRRV
>NZ_LT703506.1|WP_139809021.1|249452_249749_-|hypothetical-protein
MVSTPAAMGSAGVLGAIQAQLMAMSAANGASATALVPPDLTAASARALAQQHASAAVFETNFLLALEQMMELSATLGIASTTFDAVDALGAANVTSLV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_LT703506_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT703506_2

240974-241163

orTypeII

Consensus_repeat	Method
TGGTACGCCGCCAGGGACTTGAACCC	CRISPRCasFinder

2 spacers

Cas9_archaeal

The CRISPR arrays of NZ_LT703506_2

>merge|NZ_LT703506|2|240974-241163|CRISPRCasFinder
TGGTACGCCGCCAGGGACTTGAACCCTGCTCTCTGGATTAAAAGTCCGGAGCATCACCATCAATGCTTGCGGCGCGGGATTTGCCGTGGTGCGCCGCCAGGGACTTGAACCCCGGACCCACCGGTTAAGAGCCGGTTGCTCTGCGCTTCTGAGCTAGCGGCGCGTGGTACGTCCGACAGGACTCGAACCT

>NZ_LT703506|2|2|240974-241163|CRISPRCasFinder
TGGTACGCCGCCAGGGACTTGAACCC	TGCTCTCTGGATTAAAAGTCCGGAGCATCACCATCAATGCTTGCGGCGCGGGATTTGCCG
TGGTGCGCCGCCAGGGACTTGAACCC	CGGACCCACCGGTTAAGAGCCGGTTGCTCTGCGCTTCTGAGCTAGCGGCGCG
TGGTACGTCCGACAGGACTCGAACCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT703506.1\|WP_084259980.1\|246090_246942_-\|DUF2637-domain-containing-protein	unknown	unknown	gnl\|CDD\|378511
NZ_LT703506.1\|WP_170926720.1\|248079_249309_-\|PPE-domain-containing-protein	unknown	unknown	gnl\|CDD\|366325
NZ_LT703506.1\|WP_139809023.1\|232729_232942_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_139809017.1\|234063_234498_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259962.1\|247694_248015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259958.1\|243113_243299_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259957.1\|239940_240435_-\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|224321
NZ_LT703506.1\|WP_139809021.1\|249452_249749_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_139809020.1\|241560_241842_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259979.1\|241962_243117_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_LT703506.1\|WP_139809019.1\|237136_237844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_139809018.1\|236918_237140_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259961.1\|247304_247664_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259959.1\|243488_243941_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259953.1\|235423_235744_-\|DUF4031-domain-containing-protein	unknown	unknown	gnl\|CDD\|379076
NZ_LT703506.1\|WP_084259955.1\|236629_236851_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_084259960.1\|244067_246038_-\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|366295
NZ_LT703506.1\|WP_084259952.1\|234893_235388_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381594
NZ_LT703506.1\|WP_084259954.1\|236245_236467_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT703506.1\|WP_087140096.1\|232997_233729_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT703506.1\|WP_084259980.1\|246090_246942_-\|DUF2637-domain-containing-protein	gnl\|CDD\|378511	pfam10935, DUF2637, Protein of unknown function (DUF2637). This family of proteins has no known function.	0.00149565
NZ_LT703506.1\|WP_084259953.1\|235423_235744_-\|DUF4031-domain-containing-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	1.9317e-27
NZ_LT703506.1\|WP_170926720.1\|248079_249309_-\|PPE-domain-containing-protein	gnl\|CDD\|366325	pfam00823, PPE, PPE family. This family named after a PPE motif near to the amino terminus of the domain. The PPE family of proteins all contain an amino-terminal region of about 180 amino acids. The carboxyl terminus of this family are variable, and on the basis of this region fall into at least three groups. The MPTR subgroup has tandem copies of a motif NXGXGNXG. The second subgroup contains a conserved motif at about position 350. The third group are only related in the amino terminal region. The function of these proteins is uncertain but it has been suggested that they may be related to antigenic variation of Mycobacterium tuberculosis.	1.34781e-19
NZ_LT703506.1\|WP_084259957.1\|239940_240435_-\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	5.07102e-23
NZ_LT703506.1\|WP_084259952.1\|234893_235388_-\|hypothetical-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	0.00957647
NZ_LT703506.1\|WP_084259979.1\|241962_243117_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	4.4696e-05
NZ_LT703506.1\|WP_084259960.1\|244067_246038_-\|RNB-domain-containing-ribonuclease	gnl\|CDD\|366295	pfam00773, RNB, RNB domain. This domain is the catalytic domain of ribonuclease II.	4.68183e-55

>NZ_LT703506.1|WP_084259957.1|239940_240435_-|HNH-endonuclease
MRHFHHLRNRQQSVAVYNADYRVLTHVTWQEAIRLLLRGAVYVIERHSPAVHIHSPSTVIELPMSVALREYVHVPYRPGNRVTRDGVLQRDSYTCAYCGSHGDTLDHVIPESRGGQNTWDNLVTACAACNGRKGNRTPAEAGMRLRWEPYEPRERDRYQVPAMA
>NZ_LT703506.1|WP_139809019.1|237136_237844_+|hypothetical-protein
MTIPVTLHPDAERRAELLMSRYATLTEGNPGFHYHWHMRALEHGAADADSVTEALVEGGDRLEDLRRLVSDDQTYQMWRVRLEHPNWWIGTRVRSTTSLLAQIISELTQDQGTGFHAGISGYPGAHWFTQTKEAIQPLSEPSKEILAATLHRELQGRQFCMAAKLFDDIDASAVFPESESDTAFDGADLTEAIAAIEAVHGAAWADAFKTMLEDLDPITWPGLAESLVTERRTVR
>NZ_LT703506.1|WP_139809018.1|236918_237140_+|hypothetical-protein
MDELARDAAKLRELEQQVEDLRDSIRVRVRAELRSGTPQVELVKRTGWTRETIRKIERRGSNLRTSTRKRENP
>NZ_LT703506.1|WP_084259955.1|236629_236851_-|hypothetical-protein
MSEVVVIDGNPYNPRFPGVRHSGNHSVHTAGHRDTSDVYRGYYDPTCGWCWLGASHTDHAHRVKIERSRSDGH
>NZ_LT703506.1|WP_084259954.1|236245_236467_-|hypothetical-protein
MAKTSSKTRERVTHPDRKDSGVVVDDKAPAWTPNELTVDPPAPGMVKVRWRDSVDPNQLYWEYADELRPMPVR
>NZ_LT703506.1|WP_084259953.1|235423_235744_-|DUF4031-domain-containing-protein
MTVYVDDMRLPARVGRIEARWSHLMADTDAELHAFAASIGLRRSWAQYPGTWKSHYDVTDSKRAQAIRAGAVPIGYGSPESIALTRRKRQHQPPTPQLTLPLNEVH
>NZ_LT703506.1|WP_084259952.1|234893_235388_-|hypothetical-protein
MTEIQKEHRPALIRAGLAAAGVPEEQAELFSPLTDDILVTESGWNPDAVALAVDSSFRGPAALFGTDTARVMADGHSYATPRGVAQLTPWMFEQYQADGTSTDIYDPVASIAALWRFIADHFDVDLKTGAGVTEFREKWFDHRPDWWWLTELAPFNKSPRIPGY
>NZ_LT703506.1|WP_139809017.1|234063_234498_-|hypothetical-protein
MANPDASQQCDTPRHVVPVARLERIEPDLDGVVSRLFWRRGFDPEVAWRIAVSGDTAARMAGTHLEEECTATAELLARAAAFGWWPKKLNGDYVAVPLEQWVAEGHPFTQIVPNAEAMLDRWGIQSVVVDAVANDHPPDARGIQ
>NZ_LT703506.1|WP_087140096.1|232997_233729_+|hypothetical-protein
MEREERCAQVADLVVPVKDHELGKQGAWADELISADENERDTYLRWLLRYDDASDGPWDGDPVLEALDRAAAQIQGLQELVYELVAYARELPPGGRKYTLEQLAVAARMSVSGVRSCYTVGDISSAAGKLVIGAGKRGARGDRRWESARVWRWQCPSQAMEDALDKLVADGEAVAAPPDELHAGEPDSAYAVVEAFSTSERAYLLPNTTLNELLGEELSRRPGLGGAPLRRARRVPDPDQPPF
>NZ_LT703506.1|WP_139809023.1|232729_232942_+|hypothetical-protein
MDLTDIALLWGVDPATVRKYHQHGRLPPEDAKTGLREDGKPRYGWLRETVAAFERPGQGARTDLQPTEPE
>NZ_LT703506.1|WP_139809020.1|241560_241842_-|hypothetical-protein
MTMIRRDYYALAGMHRTSSAALSCANLTSQNVPSWTIQAERHDAVSQPSRFRLSRHEQTSAPSVGVRPDRKLGPEEQSHKSLIFGVCAARNVG
>NZ_LT703506.1|WP_084259979.1|241962_243117_+|MarR-family-transcriptional-regulator
MSTVTDRVCGVPLFTPSVMDGAVLDALTVGSEEVLNTLVVRIRAAVREGSRPHTLLVAPTGAGKTHILRVALHRTFGDSATDGAVLPVVLPESGLGIGRYSDLLVEIARVIDPMLLEQAKLLRGRGDPVGIEELIIHAGAGRMVLLVVENLDRVFRGLGAAGQGSLRAWVETSGAVLVVASTPALFEGVSSRMFPWYGSFIVEKLPGLSIDDAVTVIERGARRRGIRDLEEFVISPRGRSAVAEVWRRVGVAPRVWHLLAGLVDAQDLAAVEPAIEVLLDRLVEYYRPRLWGLPGGEQRLVTELARGEGARTVAELAAAVGVSSQSASVALRRLAAGRWVVSSKRGDDQRQSWYDLTDPLVREFVQYRQRGFIWSDARSAAPED
>NZ_LT703506.1|WP_084259958.1|243113_243299_-|hypothetical-protein
MADGYWVISVDRETGRATTSELITDTDQAWQLSLDLQDPATYTTVVSRRIPPPTPGRQVRN
>NZ_LT703506.1|WP_084259959.1|243488_243941_-|hypothetical-protein
MTRGKQIRIGKQVRTIPAANATRFDEIEHTLRQLYPAPEHANEYQAAITAAATYLIDAPEPPSPWTIRSASRGNDNSATIVDRWKTQLDAIIAPYAQQLHQARAELDAATAAARTLATLATDDGLTEPATAERFDVDRLTLRKWRGKKDR
>NZ_LT703506.1|WP_084259960.1|244067_246038_-|RNB-domain-containing-ribonuclease
MIDQSRTTTGNGAPEPLSQWDAAGRAVMIDDPATRDLDDALFVTESPNGGWTATVHIAATAATITPETPTDRHARSRIQSKYLRNKTIPMLGQSAEQQATLSETHDRPALTVAMTFDRTATLTTASVTRNQLPAGSCVRLAYGSVPTILEDPTHPLHHTMAASQHLAKALLARRTAAGALVLYDLIRGYALTEDGTIARIPTQQRTVGYVIVAELMIAASAALAEWCIDEDLTILFRNHRTRLLGGDGTELATDIAASLHDPELFEQLRSRVHRTFGRAQYATTPRGHHGLRVAAYAHVTSPLRRYADLVSQRNIWDHLAGEPPSYDRATLDEIATEINTAADTQKRSTEAHFKHQSRKEGAQHILNGDYANLDQKQWRKMFDLMTKTAPAAGIEAELNRRLSDDQLSPNDLTRVAAAGPAWIHIRKRLFRAARHKHPEFGPSIVSGRAQLLGEPQPETEVLLAPDRPVHIPLFAIRARVGDNLGAWQIRETKKAAHTQAMWELLDILCEHTTPHDQPPAWPSAGATNQPTDIPTTEHRQITTTLPDTALRHLASLTSGKRSNAFANPVGWLTSFATTQHLGTVEYHYDTRGPSHEPLFTCTARIADLKSAATSPAKKQARVATATRLITALFAAADDLPKPGAEGHPQASDEPST
>NZ_LT703506.1|WP_084259980.1|246090_246942_-|DUF2637-domain-containing-protein
MSTTVNPDARKAQRFFWCWLIAATAASITGNVSHALLATSTGNSTANPIVAAALAVVPPVVQVGATHGVHVLVNARITGAAYRTALAITVALVVFAFVLSFEALRELAIVYAGMNPTTAWLWPLVIDLSITGSTVSLLALTRAHRNATMNAAAEEQHAPTHLETPYEIPSDTAEAGNPAPTPVPTLAAITTSSPTPETPAALAATERVASTTPEPEEAWAGELRNAEHIVNEGFTRIGRTKVAQVLHAHREGTPPGTIARKLNVGYRTVVRILDHHTTQPAPV
>NZ_LT703506.1|WP_084259961.1|247304_247664_-|hypothetical-protein
MSEGKNNQAITAANFDALRGVSQQLTTALEALEGHRKQLVDIKAAARAEASVGSKTGSPAPILSPLLTSMDTAIAKVDTAIAAFKNNVGADAAALSKLADDLEDATRRGAQQATQAANG
>NZ_LT703506.1|WP_084259962.1|247694_248015_-|hypothetical-protein
MGSGEPRKYGWLIAPAATTVIWFVGAYIPALSNIWVTLNVLVPAGQPRRVTFPLAYPPVGIDGHTIASLFGLLLIIGAATRWISYLELFTPTPPDAAPAPASPPNT
>NZ_LT703506.1|WP_170926720.1|248079_249309_-|PPE-domain-containing-protein
MVPSEPWVAYLPEFNAIRRELGPGAATWLASGSMWSTLASMVAEAAAAFAAELAAVGINWQGLSQIQLAGAVPPFMAWLGLAEGVAAANALAAYAVAEADAIARGTMIPTALVSQNRISELIAEATNFFGINSGLIAFLNGQYAGYWTDNAATMLTYDEAVQLATVPKPISPPPPLANALAAAAQGAESTALAAANQGAQAGTQAATQAAQQPASTAAQAPASAGTEMVSTLLGSGGQLLSAPTQALGSGGSSLTEPLNSIMQPFQSLLGQFGGSTQDAGAFIAGPPSSAFPGANAAFTGNPVGGSTTGGGGVPFATGGGIPAGSMLANAYPHGNLSSVKSQDVFTGVPSRGPVNAANFGPGAMPAGGGMAPMMHGPGNNGSSTRRESDAVLVANVAPAGPAMDDPRRV
>NZ_LT703506.1|WP_139809021.1|249452_249749_-|hypothetical-protein
MVSTPAAMGSAGVLGAIQAQLMAMSAANGASATALVPPDLTAASARALAQQHASAAVFETNFLLALEQMMELSATLGIASTTFDAVDALGAANVTSLV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	240750-240800	0	1.0
NZ_LT703506_2	2.1\|241000\|60\|NZ_LT703506\|CRISPRCasFinder	241000-241059	60	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	241000-241059	0	1.0
NZ_LT703506_2	2.2\|241086\|52\|NZ_LT703506\|CRISPRCasFinder	241086-241137	52	NZ_LT703506	Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2	241086-241137	0	1.0
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MT498054	Gordonia Phage Engineer, complete genome	6302-6352	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF919537	Gordonia phage Toniann, complete genome	6302-6352	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK376959	Gordonia phage Aphelion, complete genome	6299-6349	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KU998244	Gordonia phage Smoothie, complete genome	6302-6352	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KU998247	Gordonia phage Bachita, complete genome	6810-6860	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF919520	Gordonia phage Lozinak, complete genome	6302-6352	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_030901	Gordonia phage ClubL, complete genome	6311-6361	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KX557276	Gordonia phage Cucurbita, complete genome	6311-6361	3	0.941
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK376956	Gordonia phage WilliamBoone, complete genome	5527-5577	4	0.922
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	19163-19213	5	0.902
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH697592	Mycobacterium phage Rando14, complete genome	910-960	6	0.882
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF185717	Mycobacterium phage AlleyCat, complete genome	846-896	6	0.882
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF185719	Mycobacterium phage Edugator, complete genome	846-896	6	0.882
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH051255	Mycobacterium phage Leston, complete genome	846-896	6	0.882
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_023724	Mycobacterium phage Larva, complete genome	587-637	6	0.882
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_028947	Mycobacterium phage Kratio, complete genome	585-635	6	0.882
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MG793454	Mycobacterium phage SWU2, complete genome	5494-5544	6	0.882
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_023498	Mycobacterium phage Validus, complete genome	995-1045	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH669003	Mycobacterium phage Girr, complete genome	53739-53789	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK359315	Mycobacterium phage MisterCuddles, complete genome	53739-53789	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH651188	Mycobacterium phage Ruby, complete genome	53741-53791	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2538599-2538649	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MT553337	Mycobacterium phage DroogsArmy, complete genome	5208-5258	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	JF957060	Mycobacterium phage Timshel, complete genome	5373-5423	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	AP018486	Mycobacterium phage PP DNA, complete genome	9549-9599	7	0.863
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MT310885	Mycobacterium phage AN9, complete genome	4322-4372	8	0.843
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	AP018476	Mycobacterium phage C3 DNA, complete sequence	4322-4372	8	0.843
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MT310884	Mycobacterium phage ANI8, complete genome	4322-4372	8	0.843
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MT310876	Mycobacterium phage VC3, complete genome	4322-4372	8	0.843
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN234228	Mycobacterium phage Tourach, complete genome	64564-64614	8	0.843
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KX641263	Mycobacterium phage Kalpine, complete genome	6136-6186	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KC691254	Mycobacterium phage Breezona, complete genome	63833-63883	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF140422	Mycobacterium phage Nicholasp3, complete genome	63342-63392	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN586052	Mycobacterium phage Kahlid, complete genome	63440-63490	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK937600	Mycobacterium phage Wigglewiggle, complete genome	63576-63626	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH910042	Mycobacterium phage Scarlett, complete genome	900-950	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN586030	Mycobacterium phage BobsGarage, complete genome	63498-63548	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_028878	Mycobacterium phage Archie, complete genome	63111-63161	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN703406	Mycobacterium phage Gabriela, complete genome	62487-62537	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF324910	Mycobacterium phage GuuelaD, complete genome	63274-63324	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH834600	Mycobacterium phage BigCheese, complete genome	63498-63548	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_031124	Mycobacterium phage Gardann, complete genome	63342-63392	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH910038	Mycobacterium phage LeMond, complete genome	900-950	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KC661276	Mycobacterium phage Winky, complete genome	63833-63883	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN096380	Mycobacterium phage Lewan, complete genome	63903-63953	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF185730	Mycobacterium phage Miley16, complete genome	63833-63883	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH910039	Mycobacterium phage Oscar, complete genome	901-951	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KX580962	Mycobacterium phage Wilder, complete genome	63294-63344	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KU997639	Mycobacterium phage Loadrie, complete genome	64004-64054	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	Z18946	Mycobacterium phage L5 complete genome	4349-4399	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KX580961	Mycobacterium phage Zakai, complete genome	63543-63593	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF324911	Mycobacterium phage SirPhilip, complete genome	783-833	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_017973	Mycobacterium phage SWU1, complete genome	4342-4392	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN703410	Mycobacterium phage Itos, complete genome	62047-62097	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH779511	Mycobacterium phage LilDestine, complete genome	62814-62864	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_015584	Mycobacterium virus Faith1, complete genome	63141-63191	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN224566	Mycobacterium phage Herbertwm, complete genome	4119-4169	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK376955	Mycobacterium phage KiSi, complete genome	900-950	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH338236	Mycobacterium phage Ebony, complete genome	6120-6170	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KY471460	Mycobacterium phage Jabith, complete genome	6114-6164	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN892487	Mycobacterium phage Mabel, complete genome	6126-6176	9	0.824
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK279905	Mycobacterium phage Acquire49, complete genome	61873-61923	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK494087	Mycobacterium phage DBQu4n, complete genome	4323-4373	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KY087993	Mycobacterium phage Hammy, complete genome	808-858	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	AP018480	Mycobacterium virus D29 DNA, complete sequence	4332-4382	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF140398	Mycobacterium phage Amohnition, complete genome	811-861	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KC787102	Mycobacterium phage Chy1, partial genome	4475-4525	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MK494092	Mycobacterium phage Silverleaf, complete genome	61287-61337	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_001900	Mycobacterium phage D29, complete genome	4332-4382	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF140406	Mycobacterium phage DarthP, complete genome	811-861	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF472893	Mycobacterium phage MissWhite, complete genome	4197-4247	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	AF022214	Mycobacterium virus D29, complete genome	4332-4382	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN234169	Mycobacterium phage Naji, complete genome	4323-4373	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	KX758538	Mycobacterium phage Kerberos, complete genome	4323-4373	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN062708	Mycobacteriumphage NothingSpecial, complete genome	6109-6159	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MT310883	Mycobacterium phage D32, complete genome	4323-4373	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MH051259	Mycobacterium phage TNguyen7, complete genome	3798-3848	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MN062706	Mycobacterium phage Heathen, complete genome	3628-3678	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	NC_042328	Mycobacterium virus HelDan, complete genome	3880-3930	10	0.804
NZ_LT703506_1	1.1\|240750\|51\|NZ_LT703506\|CRISPRCasFinder	240750-240800	51	MF373840	Mycobacterium phage Fred313, complete genome	3529-3579	10	0.804

1. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 0, identity: 1.0

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	Protospacer
***************************************************

2. spacer 2.1|241000|60|NZ_LT703506|CRISPRCasFinder matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 0, identity: 1.0

tgctctctggattaaaagtccggagcatcaccatcaatgcttgcggcgcgggatttgccg	CRISPR spacer
tgctctctggattaaaagtccggagcatcaccatcaatgcttgcggcgcgggatttgccg	Protospacer
************************************************************

3. spacer 2.2|241086|52|NZ_LT703506|CRISPRCasFinder matches to NZ_LT703506 (Mycobacterium chimaera strain Mycobacterium chimaera MC045 isolate Mycobacterium chimaera plasmid 2) position: , mismatch: 0, identity: 1.0

cggacccaccggttaagagccggttgctctgcgcttctgagctagcggcgcg	CRISPR spacer
cggacccaccggttaagagccggttgctctgcgcttctgagctagcggcgcg	Protospacer
****************************************************

4. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MT498054 (Gordonia Phage Engineer, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

5. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF919537 (Gordonia phage Toniann, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

6. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK376959 (Gordonia phage Aphelion, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

7. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KU998244 (Gordonia phage Smoothie, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

8. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KU998247 (Gordonia phage Bachita, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

9. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF919520 (Gordonia phage Lozinak, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

10. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_030901 (Gordonia phage ClubL, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

11. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KX557276 (Gordonia phage Cucurbita, complete genome) position: , mismatch: 3, identity: 0.941

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctaccagttgagctacgtccgta	Protospacer
 ***** *************************************.******

12. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK376956 (Gordonia phage WilliamBoone, complete genome) position: , mismatch: 4, identity: 0.922

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctctaccagttgagctacgtccgac	Protospacer
 *******************************************.****

13. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 5, identity: 0.902

ccaacc--ggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
--aactcacgcggttttggagaccgcggctctaccagttgagctacatccgta	Protospacer
  ***.   ***************** **************************

14. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH697592 (Mycobacterium phage Rando14, complete genome) position: , mismatch: 6, identity: 0.882

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctctaccaattgagctacccgcata	Protospacer
 *********************************.********* . *.**

15. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF185717 (Mycobacterium phage AlleyCat, complete genome) position: , mismatch: 6, identity: 0.882

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctctaccaattgagctacccgcata	Protospacer
 *********************************.********* . *.**

16. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF185719 (Mycobacterium phage Edugator, complete genome) position: , mismatch: 6, identity: 0.882

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctctaccaattgagctacccgcata	Protospacer
 *********************************.********* . *.**

17. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH051255 (Mycobacterium phage Leston, complete genome) position: , mismatch: 6, identity: 0.882

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctctaccaattgagctatctgcgaa	Protospacer
 *********************************.********. * ** *

18. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_023724 (Mycobacterium phage Larva, complete genome) position: , mismatch: 6, identity: 0.882

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctctaccaattgagctatctgcgaa	Protospacer
 *********************************.********. * ** *

19. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_028947 (Mycobacterium phage Kratio, complete genome) position: , mismatch: 6, identity: 0.882

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctctaccaattgagctatctgcgaa	Protospacer
 *********************************.********. * ** *

20. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MG793454 (Mycobacterium phage SWU2, complete genome) position: , mismatch: 6, identity: 0.882

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ccaaccagcggctttggagaccgctgctctaccagttgagctaggtgccta	Protospacer
******.****.******************************* .* * **

21. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_023498 (Mycobacterium phage Validus, complete genome) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccagttgagctacacaccct	Protospacer
 **********.*********************************. * .

22. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH669003 (Mycobacterium phage Girr, complete genome) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacat-ccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctcttccagttgagctaagcgccat-	Protospacer
 ***************************** ************ .. **.*

23. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK359315 (Mycobacterium phage MisterCuddles, complete genome) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacat-ccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctcttccagttgagctaagcgccat-	Protospacer
 ***************************** ************ .. **.*

24. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH651188 (Mycobacterium phage Ruby, complete genome) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacat-ccgta	CRISPR spacer
gcaaccggcggttttggagaccgctgctcttccagttgagctaagcgccat-	Protospacer
 ***************************** ************ .. **.*

25. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaacctgcggttttggagaccgctgctctgccagttgagctacgcccctt	Protospacer
 ***** ***********************.*************..** *

26. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MT553337 (Mycobacterium phage DroogsArmy, complete genome) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ccaaccagcggctttggagaccgctgctctaccagttgagctaggtgcctt	Protospacer
******.****.******************************* .* * *

27. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to JF957060 (Mycobacterium phage Timshel, complete genome) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ccaaccagcggctttggagaccgctgctctaccagttgagctaggtgcctt	Protospacer
******.****.******************************* .* * *

28. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to AP018486 (Mycobacterium phage PP DNA, complete genome) position: , mismatch: 7, identity: 0.863

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctaggggcgta	Protospacer
 **********.**********************.******** .  ****

29. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MT310885 (Mycobacterium phage AN9, complete genome) position: , mismatch: 8, identity: 0.843

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggttttggagaccgctgctctaccagttgagctacgtgtact	Protospacer
  ******************************************.* ...

30. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to AP018476 (Mycobacterium phage C3 DNA, complete sequence) position: , mismatch: 8, identity: 0.843

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggttttggagaccgctgctctaccagttgagctacgtgtact	Protospacer
  ******************************************.* ...

31. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MT310884 (Mycobacterium phage ANI8, complete genome) position: , mismatch: 8, identity: 0.843

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggttttggagaccgctgctctaccagttgagctacgtgtact	Protospacer
  ******************************************.* ...

32. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MT310876 (Mycobacterium phage VC3, complete genome) position: , mismatch: 8, identity: 0.843

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggttttggagaccgctgctctaccagttgagctacgtgtact	Protospacer
  ******************************************.* ...

33. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN234228 (Mycobacterium phage Tourach, complete genome) position: , mismatch: 8, identity: 0.843

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
cgaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
* *********.**********************.*********     **

34. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KX641263 (Mycobacterium phage Kalpine, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacacgccct	Protospacer
  *********.**********************.**********. * .

35. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KC691254 (Mycobacterium phage Breezona, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

36. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF140422 (Mycobacterium phage Nicholasp3, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

37. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN586052 (Mycobacterium phage Kahlid, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

38. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK937600 (Mycobacterium phage Wigglewiggle, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

39. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH910042 (Mycobacterium phage Scarlett, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctagaaaccct	Protospacer
 **********.**********************.******** *  * .

40. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN586030 (Mycobacterium phage BobsGarage, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

41. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_028878 (Mycobacterium phage Archie, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

42. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN703406 (Mycobacterium phage Gabriela, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

43. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF324910 (Mycobacterium phage GuuelaD, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

44. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH834600 (Mycobacterium phage BigCheese, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

45. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_031124 (Mycobacterium phage Gardann, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

46. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH910038 (Mycobacterium phage LeMond, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctagaaaccct	Protospacer
 **********.**********************.******** *  * .

47. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KC661276 (Mycobacterium phage Winky, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

48. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN096380 (Mycobacterium phage Lewan, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

49. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF185730 (Mycobacterium phage Miley16, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

50. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH910039 (Mycobacterium phage Oscar, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctagaaaccct	Protospacer
 **********.**********************.******** *  * .

51. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KX580962 (Mycobacterium phage Wilder, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

52. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KU997639 (Mycobacterium phage Loadrie, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

53. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to Z18946 (Mycobacterium phage L5 complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtaca	Protospacer
  *********.**********************.*********.* ...*

54. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KX580961 (Mycobacterium phage Zakai, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

55. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF324911 (Mycobacterium phage SirPhilip, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctagacaccct	Protospacer
 **********.**********************.******** *. * .

56. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_017973 (Mycobacterium phage SWU1, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtaca	Protospacer
  *********.**********************.*********.* ...*

57. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN703410 (Mycobacterium phage Itos, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

58. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH779511 (Mycobacterium phage LilDestine, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

59. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_015584 (Mycobacterium virus Faith1, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagcta	Protospacer
  *********.**********************.*********     **

60. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN224566 (Mycobacterium phage Herbertwm, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgaacgct	Protospacer
  *********.**********************.*********.  **.

61. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK376955 (Mycobacterium phage KiSi, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctagaaaccct	Protospacer
 **********.**********************.******** *  * .

62. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH338236 (Mycobacterium phage Ebony, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctagaagtgca	Protospacer
  *********.**********************.******** *  .*.*

63. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KY471460 (Mycobacterium phage Jabith, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctagaagtgca	Protospacer
  *********.**********************.******** *  .*.*

64. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN892487 (Mycobacterium phage Mabel, complete genome) position: , mismatch: 9, identity: 0.824

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctagaagtgca	Protospacer
  *********.**********************.******** *  .*.*

65. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK279905 (Mycobacterium phage Acquire49, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagctt	Protospacer
  *********.**********************.*********     *

66. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK494087 (Mycobacterium phage DBQu4n, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

67. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KY087993 (Mycobacterium phage Hammy, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctaggaaccct	Protospacer
 **********.**********************.******** .  * .

68. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to AP018480 (Mycobacterium virus D29 DNA, complete sequence) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

69. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF140398 (Mycobacterium phage Amohnition, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctaggaaccct	Protospacer
 **********.**********************.******** .  * .

70. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KC787102 (Mycobacterium phage Chy1, partial genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

71. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MK494092 (Mycobacterium phage Silverleaf, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctaccgagctt	Protospacer
  *********.**********************.*********     *

72. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_001900 (Mycobacterium phage D29, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

73. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF140406 (Mycobacterium phage DarthP, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcaaccggcggctttggagaccgctgctctaccaattgagctaggaaccct	Protospacer
 **********.**********************.******** .  * .

74. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF472893 (Mycobacterium phage MissWhite, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtacg	Protospacer
  *********.**********************.*********.* ....

75. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to AF022214 (Mycobacterium virus D29, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

76. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN234169 (Mycobacterium phage Naji, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

77. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to KX758538 (Mycobacterium phage Kerberos, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

78. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN062708 (Mycobacteriumphage NothingSpecial, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtacg	Protospacer
  *********.**********************.*********.* ....

79. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MT310883 (Mycobacterium phage D32, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
ggaaccggcggctttggagaccgctgctctaccaattgagctacgtgtact	Protospacer
  *********.**********************.*********.* ...

80. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MH051259 (Mycobacterium phage TNguyen7, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcagcacgcggctttggagaccgctgctctaccaattgagctacgcgccta	Protospacer
 **.*  ****.**********************.*********.. * **

81. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MN062706 (Mycobacterium phage Heathen, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcagcacgcggctttggagaccgctgctctaccaattgagctacgcgccta	Protospacer
 **.*  ****.**********************.*********.. * **

82. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to NC_042328 (Mycobacterium virus HelDan, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcagcacgcggctttggagaccgctgctctaccaattgagctacgcgccta	Protospacer
 **.*  ****.**********************.*********.. * **

83. spacer 1.1|240750|51|NZ_LT703506|CRISPRCasFinder matches to MF373840 (Mycobacterium phage Fred313, complete genome) position: , mismatch: 10, identity: 0.804

ccaaccggcggttttggagaccgctgctctaccagttgagctacatccgta	CRISPR spacer
gcagcacgcggctttggagaccgctgctctaccaattgagctacgcgccta	Protospacer
 **.*  ****.**********************.*********.. * **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15196 : 68293

uncultured_Caudovirales_phage(14.29%)

transposase,integrase

attL 25639:25655|attR 52824:52840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_036432573.1\|15196_17173_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.1e-96	37.5
WP_036432576.1\|17771_18137_-	STAS/SEC14 domain-containing protein	NA	NA	NA	NA
WP_036432578.1\|18160_18493_-	YnfA family protein	A0A2H4JF35	uncultured_Caudovirales_phage	3.0e-12	35.0
WP_036432580.1\|18503_18836_-	hypothetical protein	NA	NA	NA	NA
WP_054585447.1\|18822_19275_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_036432584.1\|19271_19616_-	hypothetical protein	NA	NA	NA	NA
WP_036432587.1\|19689_20148_-	low molecular weight phosphatase family protein	A0A2H4PQT9	Staphylococcus_phage	1.5e-06	28.5
WP_036432590.1\|20175_20844_-	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	3.8e-14	38.5
WP_036432593.1\|20836_21955_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_084260096.1\|21951_22314_-	winged helix-turn-helix transcriptional regulator	A0A218MNF3	uncultured_virus	6.5e-08	43.1
WP_087139964.1\|22356_23585_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.0e-28	34.9
WP_036432600.1\|23715_24228_-	DinB family protein	NA	NA	NA	NA
WP_036432603.1\|24291_24768_-	VOC family protein	NA	NA	NA	NA
WP_036432606.1\|24868_25228_+	helix-turn-helix transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	6.0e-06	45.6
WP_036432609.1\|25308_25722_-\|transposase	transposase	NA	NA	NA	NA
25639:25655	attL	NA	NA	NA	NA
WP_036432612.1\|25718_27872_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_036435507.1\|27945_29151_-\|integrase	tyrosine-type recombinase/integrase	S6C485	Thermus_phage	1.0e-09	26.8
WP_070930154.1\|29173_30430_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	2.7e-13	29.1
WP_049234150.1\|30494_31208_-	hypothetical protein	NA	NA	NA	NA
WP_170926740.1\|31458_33390_-	DEAD/DEAH box helicase family protein	I4AZM6	Saccharomonospora_phage	1.2e-89	38.3
WP_145955075.1\|34673_35006_-	hypothetical protein	NA	NA	NA	NA
WP_084260093.1\|35043_35301_-	hypothetical protein	NA	NA	NA	NA
WP_084260092.1\|35419_35629_-	hypothetical protein	NA	NA	NA	NA
WP_084260091.1\|35791_35989_-	hypothetical protein	NA	NA	NA	NA
WP_170926737.1\|36061_36208_-	hypothetical protein	NA	NA	NA	NA
WP_084260090.1\|36263_36485_-	hypothetical protein	NA	NA	NA	NA
WP_170926736.1\|37575_37728_-	hypothetical protein	NA	NA	NA	NA
WP_170926735.1\|37996_38137_-	hypothetical protein	NA	NA	NA	NA
WP_139809056.1\|38154_38367_-	hypothetical protein	NA	NA	NA	NA
WP_145955076.1\|38414_40691_-	hypothetical protein	NA	NA	NA	NA
WP_170926734.1\|40936_41107_-	hypothetical protein	NA	NA	NA	NA
WP_139809054.1\|41442_41673_-	hypothetical protein	NA	NA	NA	NA
WP_047328137.1\|42052_43024_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_084260085.1\|43265_43478_-	hypothetical protein	NA	NA	NA	NA
WP_084260084.1\|43604_44159_-	hypothetical protein	NA	NA	NA	NA
WP_084260083.1\|44261_45272_-	DNA-binding protein WhiA	NA	NA	NA	NA
WP_084260082.1\|45390_45684_-	hypothetical protein	NA	NA	NA	NA
WP_084260081.1\|46241_47189_+	DUF1942 domain-containing protein	NA	NA	NA	NA
WP_172417604.1\|47208_47379_-	hypothetical protein	NA	NA	NA	NA
WP_044524776.1\|48073_48670_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_087139968.1\|48783_50559_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_087140119.1\|52089_53721_-	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	1.3e-15	23.3
52824:52840	attR	NA	NA	NA	NA
WP_006438776.1\|53755_54160_-	SCP2 sterol-binding domain-containing protein	NA	NA	NA	NA
WP_087140121.1\|54208_55708_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_087139970.1\|55994_57101_-	NDMA-dependent alcohol dehydrogenase	E3SJ82	Synechococcus_phage	4.0e-32	27.6
WP_087139972.1\|57490_58189_-	response regulator transcription factor	NA	NA	NA	NA
WP_087139974.1\|58224_59556_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_087139978.1\|60025_61288_+	cytochrome P450	NA	NA	NA	NA
WP_087139980.1\|61287_62562_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.2e-05	27.0
WP_044524800.1\|62583_62904_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_087139982.1\|65034_66795_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	4.8e-88	39.3
WP_087139985.1\|66895_68293_+\|transposase	IS1380 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT703505

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_LT703506

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection