CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT837687	Helicobacter pylori isolate BCM-300 chromosome I	1 crisprs	cas14k,cas14j,cas2,DEDDh,csx1	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT837687_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT837687_1

583983-584062

Orphan

Consensus_repeat	Method
GAGAACCCATTTATGCTCAAGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT837687_1

>merge|NZ_LT837687|1|583983-584062|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTTAATAAAAAGAAAACAGGACAAGTAGCTAGCCCTGAAGAACCCATTTATGCTCAAGTT

>NZ_LT837687|1|1|583983-584062|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTT	AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG
AAGAACCCATTTATGCTCAAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT837687.1\|WP_089086790.1\|588246_589116_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_LT837687.1\|WP_089086791.1\|589129_589813_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|129290
NZ_LT837687.1\|WP_089086789.1\|585631_586399_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|272885
NZ_LT837687.1\|WP_000855256.1\|572295_573009_-\|cag-pathogenicity-island-VirB5-family-T4SS-associated-adhesin-CagL	unknown	unknown	unknown
NZ_LT837687.1\|WP_025449159.1\|574161_575274_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH	unknown	unknown	unknown
NZ_LT837687.1\|WP_089086793.1\|590787_591609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT837687.1\|WP_001029404.1\|592593_593532_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl\|CDD\|273113
NZ_LT837687.1\|WP_089086784.1\|573005_574151_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI	unknown	unknown	unknown
NZ_LT837687.1\|WP_089087379.1\|579540_580164_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	unknown	unknown	gnl\|CDD\|293175
NZ_LT837687.1\|WP_089086794.1\|591679_592117_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT837687.1\|WP_089086783.1\|571294_572215_+\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN	unknown	unknown	unknown
NZ_LT837687.1\|WP_089086788.1\|585128_585503_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350195
NZ_LT837687.1\|WP_089086792.1\|589825_590791_+\|sialidase	unknown	unknown	unknown
NZ_LT837687.1\|WP_089086786.1\|580165_580513_-\|sodium:calcium-antiporter	unknown	unknown	gnl\|CDD\|374896
NZ_LT837687.1\|WP_000428893.1\|580656_580884_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT837687.1\|WP_001004721.1\|586438_587755_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_LT837687.1\|WP_089086785.1\|576580_579532_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	unknown	unknown	gnl\|CDD\|273346
NZ_LT837687.1\|WP_000715278.1\|588019_588223_+\|50S-ribosomal-protein-L31	unknown	unknown	gnl\|CDD\|376487
NZ_LT837687.1\|WP_000855886.1\|575289_575718_-\|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG	unknown	unknown	unknown
NZ_LT837687.1\|WP_000814269.1\|575772_576579_-\|type-IV-secretion-system-chaperone-CagF	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT837687.1\|WP_089086788.1\|585128_585503_+\|hypothetical-protein	gnl\|CDD\|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT837687.1\|WP_089086790.1\|588246_589116_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.15289e-113
NZ_LT837687.1\|WP_089086786.1\|580165_580513_-\|sodium:calcium-antiporter	gnl\|CDD\|374896	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system. T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.	6.0415e-33
NZ_LT837687.1\|WP_089086789.1\|585631_586399_-\|glutamate-racemase	gnl\|CDD\|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.05764e-126
NZ_LT837687.1\|WP_001004721.1\|586438_587755_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_LT837687.1\|WP_089086785.1\|576580_579532_-\|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_LT837687.1\|WP_000715278.1\|588019_588223_+\|50S-ribosomal-protein-L31	gnl\|CDD\|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	1.40477e-32
NZ_LT837687.1\|WP_089087379.1\|579540_580164_-\|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	gnl\|CDD\|293175	pfam16567, CagD, Pathogenicity island component CagD. CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.	2.1214e-123
NZ_LT837687.1\|WP_001029404.1\|592593_593532_-\|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl\|CDD\|273113	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_LT837687.1\|WP_089086791.1\|589129_589813_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	7.49757e-88

>NZ_LT837687.1|WP_000428893.1|580656_580884_-|hypothetical-protein
MENKSIGQIFKESLKKSFFSGLWSCLKWSFILTLISLGLFLLVFRFQPETIKKYIKDPKDLQFYDDLRKKNGWDK
>NZ_LT837687.1|WP_089086786.1|580165_580513_-|sodium:calcium-antiporter
MKFFTRITDSYKKVVVTLGLAITANPLMAVNSPATGITETKTLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS
>NZ_LT837687.1|WP_089087379.1|579540_580164_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD
MINNNSNKKLRGFFLKVLLSLVVFSSYGSANDDKEAKKEVLEKEKNTPNGPVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL
>NZ_LT837687.1|WP_089086785.1|576580_579532_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE
MFVASKQADEQKKLVIEQEVQKRQFQKIEELKADMQKGINPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTIKKKIVIDETNRDYGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDGIIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFAYNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTDATMEQKQTAISVVKELVKNLATKSDEKDENGNSVSFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMYQQIKEY
>NZ_LT837687.1|WP_000814269.1|575772_576579_-|type-IV-secretion-system-chaperone-CagF
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSNFLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINEGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIRQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIIPNWIQTDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQNKNSD
>NZ_LT837687.1|WP_000855886.1|575289_575718_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMSDYGPNNSFMYGYAPTYSDSSFLPPILGY
>NZ_LT837687.1|WP_025449159.1|574161_575274_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH
MAGTQAIYESSSAGFLSQVSSIISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSVPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILGQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK
>NZ_LT837687.1|WP_089086784.1|573005_574151_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI
MKCFLSIFSFLTFCGLSLDGAGAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATMSAMLKGANGVINGVNGMTGGFFAGSDILLGVMEGYSSALSALGGNVKIIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLEGFETWLKEAMKKATLIDYNSLTGQALFQSAIYAPALSFFSSMGTPFGIIETFTLAPTKCPYLDGLKISACLMGQVIQNYRMIVALIQNKLSDADFQNIAYLNGINEEIKTLKGSVDLNALIEAAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIANSKVIVK
>NZ_LT837687.1|WP_000855256.1|572295_573009_-|cag-pathogenicity-island-VirB5-family-T4SS-associated-adhesin-CagL
MKTLVKNTIFSFLLLSVLMAEDITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANDKMGEEDALNIKKAAMALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQKTAEQQCGISDKILVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLIIASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQERQSSKIIVK
>NZ_LT837687.1|WP_089086783.1|571294_572215_+|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARVEQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSSTETKSNKDDNFDEMINKVNEAFVKPATPLVPDEWRTPEIEIVINKCIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLNGLKLALNNNNNRTFLIASCAICEKRKKEMEQENNYQDTTNASEFGTTDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK
>NZ_LT837687.1|WP_089086788.1|585128_585503_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT837687.1|WP_089086789.1|585631_586399_-|glutamate-racemase
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHQIELLIVACNTASALALEEMQKHSKIPIVGVIEPSILAIKRQVENKNAPILVLGTKATIQSNAYDNALKQQGYLNVSHLATSLFVPLIEESILEGELLETCMRYYFAPLKILPEVIILGCTHFPLIAQKIESYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACAFPKVEFHASGDVIWLEKQAKEWLKL
>NZ_LT837687.1|WP_001004721.1|586438_587755_-|transcription-termination-factor-Rho
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKVEAINYSPSDEIRNRPLFDNLTPLFPDEQIKLEYESTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLKLMNEK
>NZ_LT837687.1|WP_000715278.1|588019_588223_+|50S-ribosomal-protein-L31
MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKFKQRYNLK
>NZ_LT837687.1|WP_089086790.1|588246_589116_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLYFLPTPIGNLADITLRTLEVLERCEVFLCEDTRVSKRLLHLLAKNPIISHSFPNIAAKKREFIAFHSHNDQEFLNQIEPSFFDKEIAVMSDAGMPSLSDPGMSLAAYALKHNIQYDVLPGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLRIIKILNALAYLEEKTPVVFYESPHRLLETLRDLNDLAQGMHLFAAKELTKLHQQYYLGEISQIMTQLQKSNIQGEWVLVLLNEKKIEPSMGLSALLELDLPPKIKAKMEAAMTQKNAKELYCQRLLEEKKQCD
>NZ_LT837687.1|WP_089086791.1|589129_589813_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MQAVVYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAREFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILMDKIN
>NZ_LT837687.1|WP_089086792.1|589825_590791_+|sialidase
MEQNKKSLENLDLSDVQNISKDISGAALEELSLKNLDKNLQILKEVGATEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWVKEFDKVCVFKEGVGEEQKQETSPEETAKKLLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQNSSSLKEEREQESAIKSGTKNSSFNEVSPTEEKKLEPTPKLEEKPKEQDKQGKEAIKENPNTIYIIPKRDIWVEVIDLDEKKNSFQKVFKKSYPLEAKNHRLLLRFGHGHLILKNNHQEQDYNDSKTRRFLYDPNKGLTLINEAQYKVLQQ
>NZ_LT837687.1|WP_089086793.1|590787_591609_+|hypothetical-protein
MNKLFLAFIVGGMLLNADALNDKIENLMGERSYHMNKLFLERLFKNRKDFYEMGRLDSLKLLNTLKENGLLSFNFDKPSVLKITFKASSNPLEFAKSINNSLNMMGYSYVLPIKMQSSSGENVFSYELKTEYVLDPNILIETMKRHGFDFMDIRRVSLKEWEYDFALQKIKLPNARALVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIALNLLNGVRFIHITDAKNPIILKNGISVVFDAMP
>NZ_LT837687.1|WP_089086794.1|591679_592117_-|hypothetical-protein
MFIHEKIKSRFSRNWSLRNRGRHFASSSVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFLISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVFFIEAGADLLVGCVIQKIFFGKYWVDRYY
>NZ_LT837687.1|WP_001029404.1|592593_593532_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MAIYLDFENHIKEIQNEIELALIRGDEDAKEILEKRLDKEVKTIYSNLTDFQKLQLARHPDRPYAMDYIDLILKDKYEVFGDRHYNDDKAIVCFIGKIDNVPVVVIGEEKGRGTKNKLLRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEYSIFSVISPEGCAAILWDDPSKTEVAIKAMKITPRDLKEAGLIDDIILEPSKGAHRDKFSAANTIKEYFLDALRTIQQDPHFLDNRYQKLMSLGSFVEGMN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1422245 : 1433125

uncultured_Caudovirales_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172825134.1\|1422245_1424291_+	DNA helicase UvrD	A7KV33	Bacillus_phage	1.0e-89	35.4
WP_089087243.1\|1424287_1424944_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_000780111.1\|1424953_1425517_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_042636077.1\|1425516_1425990_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.6e-28	45.5
WP_000289021.1\|1425991_1426567_+	dTMP kinase	Q2XUX0	environmental_halophage	5.8e-11	39.4
WP_001203585.1\|1426554_1427130_+	ComF family protein	NA	NA	NA	NA
WP_089087244.1\|1427164_1429201_+	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	2.4e-75	34.3
WP_089087245.1\|1429197_1430379_+	restriction endonuclease subunit S	A0A2H4J2Z3	uncultured_Caudovirales_phage	7.2e-24	51.3
WP_172825135.1\|1430449_1433125_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	2.6e-61	38.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage