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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT903847 Escherichia coli O127:H6 isolate EPEC1 chromosome 1 5 crisprs cas3,RT,csa3,DEDDh,DinG,cas14j 0 4 12 0

Results visualization

1. NZ_LT903847
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT903847_1 334669-334792 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT903847_2 2387649-2387762 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT903847_3 3044202-3044325 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT903847_4 3699533-3699624 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT903847_5 4472867-4473014 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT903847_1 1.1|334702|58|NZ_LT903847|CRISPRCasFinder 334702-334759 58 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 14191-14248 0 1.0
NZ_LT903847_4 4.1|3699559|40|NZ_LT903847|CRISPRCasFinder 3699559-3699598 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 194046-194083 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 194139-194176 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 194232-194269 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 204540-204577 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 204633-204670 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 204726-204763 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 195374-195411 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 195467-195504 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 195560-195597 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 176329-176366 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 176422-176459 1 0.974
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 176515-176552 1 0.974
NZ_LT903847_3 3.1|3044245|38|NZ_LT903847|CRISPRCasFinder 3044245-3044282 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 MF374379 Escherichia phage DN1, complete genome 31109-31146 6 0.842
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229328-229365 8 0.789
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239822-239859 8 0.789
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230734-230771 8 0.789
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211704-211741 8 0.789
NZ_LT903847_1 1.1|334702|58|NZ_LT903847|CRISPRCasFinder 334702-334759 58 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31294-31351 10 0.828
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_CP019203 Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence 107556-107593 10 0.737
NZ_LT903847_5 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder 4472922-4472959 38 NZ_LN868945 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence 74014-74051 10 0.737
NZ_LT903847_1 1.1|334702|58|NZ_LT903847|CRISPRCasFinder 334702-334759 58 NZ_CP053046 Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence 58261-58318 13 0.776
NZ_LT903847_1 1.1|334702|58|NZ_LT903847|CRISPRCasFinder 334702-334759 58 MG065691 UNVERIFIED: Campylobacter phage A11a, complete genome 63884-63941 15 0.741
NZ_LT903847_1 1.1|334702|58|NZ_LT903847|CRISPRCasFinder 334702-334759 58 MG065686 UNVERIFIED: Campylobacter phage A18a, complete genome 110182-110239 15 0.741

1. spacer 1.1|334702|58|NZ_LT903847|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 0, identity: 1.0

aggcgctggttgccggatgcggcgtgaacgccttatccggcctacattcggcaacggc	CRISPR spacer
aggcgctggttgccggatgcggcgtgaacgccttatccggcctacattcggcaacggc	Protospacer
**********************************************************

2. spacer 4.1|3699559|40|NZ_LT903847|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

3. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

4. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

5. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattctcgcgccac	Protospacer
******************************.*******

6. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

7. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

8. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattctcgcgccac	Protospacer
******************************.*******

9. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

10. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

11. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattctcgcgccac	Protospacer
******************************.*******

12. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

13. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattcttgcgccat	Protospacer
*************************************.

14. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 1, identity: 0.974

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
tgcgctacgcttatcaggcctacagattctcgcgccac	Protospacer
******************************.*******

15. spacer 3.1|3044245|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

16. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 6, identity: 0.842

tgcgctacgcttatcaggcctacagattcttgcgccac-	CRISPR spacer
tgcgctacgcttatcaggcctacattttctc-cgcaata	Protospacer
************************  ****. *** *. 

17. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.789

----tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
ctaacgcgt----cttatcaggcctacaaattctcgcgccac	Protospacer
    .***.    ***************.*****.*******

18. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.789

----tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
ctaacgcgt----cttatcaggcctacaaattctcgcgccac	Protospacer
    .***.    ***************.*****.*******

19. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.789

----tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
ctaacgcgt----cttatcaggcctacaaattctcgcgccac	Protospacer
    .***.    ***************.*****.*******

20. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.789

----tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
ctaacgcgt----cttatcaggcctacaaattctcgcgccac	Protospacer
    .***.    ***************.*****.*******

21. spacer 1.1|334702|58|NZ_LT903847|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.828

---aggcgctggttgccggatgcggcgtgaacgccttatccggcctacattcggcaacgg	CRISPR spacer
gctaagc---aaatgccggatgcggcgtaaacgccttatccggcctacatttggcaacgg	Protospacer
   *.**   .. ***************.**********************.********

22. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 10, identity: 0.737

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
ggcgctacgcttatcaggcctacaggttgcagaaacgt	Protospacer
 ************************.** . * . *..

23. spacer 5.1|4472922|38|NZ_LT903847|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.737

tgcgctacgcttatcaggcctacagattcttgcgccac	CRISPR spacer
ggcgctacgcttatcaggcctacaggttgcagaaacgt	Protospacer
 ************************.** . * . *..

24. spacer 1.1|334702|58|NZ_LT903847|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 13, identity: 0.776

aggcgctggttgccggatgcggcgtgaacgccttatccggcctacattcggcaacggc--	CRISPR spacer
tatgtcaggttgccggatgcggcgtaaacgccttatccggcatacattagcc--cggttg	Protospacer
 .   * ******************.*************** ****** * *  ***.  

25. spacer 1.1|334702|58|NZ_LT903847|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 15, identity: 0.741

aggcgctggttgccggatgcggcgtgaacgccttatccggcctaca----ttcggcaacg	CRISPR spacer
tatagcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcatgaaaa--	Protospacer
 .  ***  *************************************    . .*. **  

26. spacer 1.1|334702|58|NZ_LT903847|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 15, identity: 0.741

aggcgctggttgccggatgcggcgtgaacgccttatccggcctaca----ttcggcaacg	CRISPR spacer
tatagcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcatgaaaa--	Protospacer
 .  ***  *************************************    . .*. **  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1771613 : 1778753 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_2 1795302 : 1920530 110 Escherichia_phage(18.42%) tRNA,integrase,transposase,tail attL 1846723:1846737|attR 1878807:1878821
DBSCAN-SWA_3 2006575 : 2145973 156 Salmonella_phage(32.63%) capsid,holin,tail,integrase,tRNA,transposase,plate,protease,terminase,head attL 2009674:2009689|attR 2049971:2049986
DBSCAN-SWA_4 2228035 : 2276753 79 Enterobacteria_phage(34.29%) capsid,holin,tail,plate,integrase,protease,terminase attL 2232665:2232680|attR 2275685:2275700
DBSCAN-SWA_5 2513962 : 2523407 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_6 2626023 : 2643788 16 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_7 2951732 : 2997952 58 Enterobacteria_phage(72.34%) capsid,holin,portal,tail,tRNA,plate,integrase,terminase,head attL 2959068:2959092|attR 2995527:2995551
DBSCAN-SWA_8 3334487 : 3428681 100 Stx2-converting_phage(27.27%) capsid,portal,holin,tail,integrase,transposase,protease,terminase,head attL 3381610:3381635|attR 3428820:3428845
DBSCAN-SWA_9 3646638 : 3670477 16 Escherichia_phage(30.0%) transposase NA
DBSCAN-SWA_10 3679457 : 3758289 93 Enterobacteria_phage(51.52%) portal,holin,lysis,tail,integrase,transposase,protease,terminase attL 3702689:3702703|attR 3754259:3754273
DBSCAN-SWA_11 3857761 : 3944007 89 Salmonella_phage(60.71%) capsid,portal,lysis,tail,tRNA,plate,integrase,protease,terminase,head attL 3910481:3910506|attR 3944082:3944107
DBSCAN-SWA_12 3979708 : 4071600 112 Enterobacteria_phage(38.89%) capsid,portal,holin,lysis,tail,integrase,transposase,terminase,head attL 3983609:3983624|attR 4083530:4083545
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage