CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT827011	Escherichia coli O127:H6 isolate EPEC E2348/69 variety 2 chromosome 1	5 crisprs	cas14j,DinG,cas3,RT,DEDDh,csa3	0	5	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT827011_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT827011_1

319477-319624

Orphan

Consensus_repeat	Method
TCAGGCATTGGCCACCACAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT827011_1

>merge|NZ_LT827011|1|319477-319624|CRISPRCasFinder
TCAGGCATTGGCCACCACAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTGGTCACCACAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGA

>NZ_LT827011|1|1|319477-319624|CRISPRCasFinder
TCAGGCATTGGCCACCACAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGA	GTGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCA
TCAGGCATTGGTCACCACAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT827011.1\|WP_001285876.1\|328435_329605_+\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
NZ_LT827011.1\|WP_001295808.1\|312016_313105_+\|DNA-binding-transcriptional-activator/c-di-GMP-phosphodiesterase-PdeL	unknown	unknown	gnl\|CDD\|214491
NZ_LT827011.1\|WP_000976980.1\|324363_325038_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|273358
NZ_LT827011.1\|WP_000010312.1\|331129_332941_+\|propionate--CoA-ligase	unknown	unknown	gnl\|CDD\|182517
NZ_LT827011.1\|WP_001084388.1\|313146_314079_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182237
NZ_LT827011.1\|WP_001313612.1\|308389_308977_-\|transcriptional-regulator-BetI	unknown	unknown	gnl\|CDD\|179115
NZ_LT827011.1\|WP_001013875.1\|314170_314668_-\|DUF1097-domain-containing-protein	unknown	unknown	gnl\|CDD\|368942
NZ_LT827011.1\|WP_000662398.1\|320678_322061_+\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|235873
NZ_LT827011.1\|WP_000941085.1\|325560_327147_-\|propionate-catabolism-operon-regulatory-protein-PrpR	unknown	unknown	gnl\|CDD\|237963
NZ_LT827011.1\|WP_000052189.1\|327385_328267_+\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086
NZ_LT827011.1\|WP_000131041.1\|309105_311139_+\|choline-BCCT-transporter-BetT	unknown	unknown	gnl\|CDD\|236635
NZ_LT827011.1\|WP_000111850.1\|316423_317971_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_LT827011.1\|WP_000691951.1\|325184_325460_+\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|182151
NZ_LT827011.1\|WP_001339252.1\|306903_308376_-\|betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183918
NZ_LT827011.1\|WP_000355698.1\|322483_323482_+\|NADPH-dependent-aldehyde-reductase-YahK	unknown	unknown	gnl\|CDD\|176186
NZ_LT827011.1\|WP_000153112.1\|314925_315531_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LT827011.1\|WP_000661657.1\|319718_320669_+\|carbamate-kinase-family-protein	unknown	unknown	gnl\|CDD\|183464
NZ_LT827011.1\|WP_000126705.1\|329638_331090_+\|2-methylcitrate-dehydratase	unknown	unknown	gnl\|CDD\|181845
NZ_LT827011.1\|WP_001339250.1\|315570_316434_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_LT827011.1\|WP_000083478.1\|317970_319389_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673

Protein	Function_ID	Function_description	E-value
NZ_LT827011.1\|WP_001285876.1\|328435_329605_+\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
NZ_LT827011.1\|WP_001295808.1\|312016_313105_+\|DNA-binding-transcriptional-activator/c-di-GMP-phosphodiesterase-PdeL	gnl\|CDD\|214491	smart00052, EAL, Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.	9.73401e-102
NZ_LT827011.1\|WP_000976980.1\|324363_325038_-\|LysE-family-transporter	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	1.84398e-73
NZ_LT827011.1\|WP_000010312.1\|331129_332941_+\|propionate--CoA-ligase	gnl\|CDD\|182517	PRK10524, prpE, propionyl-CoA synthetase; Provisional.	0
NZ_LT827011.1\|WP_001084388.1\|313146_314079_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182237	PRK10094, PRK10094, HTH-type transcriptional activator AllS.	7.71252e-82
NZ_LT827011.1\|WP_001313612.1\|308389_308977_-\|transcriptional-regulator-BetI	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	2.08205e-110
NZ_LT827011.1\|WP_001013875.1\|314170_314668_-\|DUF1097-domain-containing-protein	gnl\|CDD\|368942	pfam06496, DUF1097, Protein of unknown function (DUF1097). This family consists of several bacterial putative membrane proteins.	1.6862e-18
NZ_LT827011.1\|WP_000662398.1\|320678_322061_+\|amidohydrolase-family-protein	gnl\|CDD\|235873	PRK06846, PRK06846, putative deaminase; Validated.	0
NZ_LT827011.1\|WP_000941085.1\|325560_327147_-\|propionate-catabolism-operon-regulatory-protein-PrpR	gnl\|CDD\|237963	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional.	0
NZ_LT827011.1\|WP_000052189.1\|327385_328267_+\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0
NZ_LT827011.1\|WP_000131041.1\|309105_311139_+\|choline-BCCT-transporter-BetT	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
NZ_LT827011.1\|WP_000111850.1\|316423_317971_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	2.96836e-160
NZ_LT827011.1\|WP_000691951.1\|325184_325460_+\|DUF1471-domain-containing-protein	gnl\|CDD\|182151	PRK09929, PRK09929, hypothetical protein; Provisional.	5.05349e-43
NZ_LT827011.1\|WP_001339252.1\|306903_308376_-\|betaine-aldehyde-dehydrogenase	gnl\|CDD\|183918	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.	0
NZ_LT827011.1\|WP_000355698.1\|322483_323482_+\|NADPH-dependent-aldehyde-reductase-YahK	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
NZ_LT827011.1\|WP_000153112.1\|314925_315531_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	6.6679e-20
NZ_LT827011.1\|WP_000661657.1\|319718_320669_+\|carbamate-kinase-family-protein	gnl\|CDD\|183464	PRK12352, PRK12352, putative carbamate kinase; Reviewed.	0
NZ_LT827011.1\|WP_000126705.1\|329638_331090_+\|2-methylcitrate-dehydratase	gnl\|CDD\|181845	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase.	0
NZ_LT827011.1\|WP_001339250.1\|315570_316434_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	2.43624e-35
NZ_LT827011.1\|WP_000083478.1\|317970_319389_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.05456e-115

>NZ_LT827011.1|WP_000083478.1|317970_319389_+|DUF1116-domain-containing-protein
MSQSLFSQPLNVINVGIAMFSDDLKKQHVEVTQLDWTPPGQGNMQVVQALDNIADSPLADKITAANQQALERIIQSHPVLIGFDQAINVVPGMTPKTILHAGPPVTWEKMCGAMKGAVTGALVFEGLAKDLDEAAELAASGEITFSPCHEHDCVGSMAGVTSASMFMHIVKNKTYGNVAYTNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPMLRDAMKIIGEIDLRLMLAQALHMGDECHNRNNAGTTLLIQALTPGIIQAGYSVEQQREVFEFVASSDYFSGPTWMAMCKAAMDAAHGIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPAQQVIGPMFAGYKPEDSGLDIGDSAITETYGIGGFAMATAPAIVALVGGTVEEAIDFSRQMREITLSENPNVTIPLLGFMGVPSAIDITRVGSSGILPVINTAIAHKDAGVGMIGAGIVHPPFACFEKAILGWCERYGV
>NZ_LT827011.1|WP_000111850.1|316423_317971_+|acyl-CoA-synthetase-FdrA
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKSGVDNEQLLAEIEELFNTKAQSGSHEARYATIASAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGTALCFGNAVRRGNIGIVGASGTGSQELSVRIYEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIVLISKPPAPAVARKVLERARACRKPVVACFLGRGETPVDEQGLQFARGSKEAALKAVMLSGVKQEHLDLHTLNQPLIADVRARLQSQQKYIRGLFCGGTLCDETLFAVMEKHGDVYSNIQPDPEFRLQDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIEAIKEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
>NZ_LT827011.1|WP_001339250.1|315570_316434_+|DUF2877-domain-containing-protein
MWALTADADFLAQRGQGQVEQVFARAVNIALPARQQLLTLLCEEYDNAPNSCRLALTHFNGLFRHGDKVQFDDQGITVGQHHHIEMSHCQRWLSPTLQMTALNFHLIAWQQWHDIIHQHLGENETLFNYRGDNPFYQALNKELHIKRRAVIQAVNDKQNIAVAVASMMGLGIGLTPSADDYLTGLVLILFISGHPAEKYKEEFYLGLQRGRNNTTLLSAITLEAALQQRCRENIHRFIHNIIYDIPGNATQAIEKIKHIGSSSGCDMLYGMADGCALSQTYGGNYVS
>NZ_LT827011.1|WP_000153112.1|314925_315531_+|ankyrin-repeat-domain-containing-protein
MTIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCERQGKTAITLASLYQQYACVQALIDAGANINKQDHTCLNPFLMSCLNDDLTLLRIILPAKPDLNCVTRFGGVGLTPACEKGHLSIVKELLAHTEINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQLLLEHGASPHLTDKYGKTPLELARERGFEEIAQLLIAAGA
>NZ_LT827011.1|WP_001013875.1|314170_314668_-|DUF1097-domain-containing-protein
MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIRSLAVNYSGMVWAFFAALAAGWLAPVSGISGVWASVITTVPFSAVVVWQGRFWLLSFIPGGFLGMTLFFASGMNWTVTLLGFLAGNCVGIISEYGGQKLSEATTKRDGY
>NZ_LT827011.1|WP_001084388.1|313146_314079_-|LysR-family-transcriptional-regulator
MNSIFTEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRMETGLDVVLFTRSTRSIELTESGRYFFRKATDLLNDFHAIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGGGIDYTEIGAIRWAFAIAPDHPLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEGIGFLPDYMVREAMAQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFAPNGILTGIYQDLLHREN
>NZ_LT827011.1|WP_001295808.1|312016_313105_+|DNA-binding-transcriptional-activator/c-di-GMP-phosphodiesterase-PdeL
MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGNNSHKYINDNHYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGMIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVKKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKAGG
>NZ_LT827011.1|WP_000131041.1|309105_311139_+|choline-BCCT-transporter-BetT
MTDLSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIGRTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGGAAFAEEAMVHPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSQLKDINSDAPGWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRESANRDTAPRPLGLQDRLSWKKRLSRLMNYPGTRYTKQMMETVCYPAMEEVAQELRLRGAYVELKNLPPEEGQQLGHLDLLVHMGEEQNFVYQIWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGHSVMFPDS
>NZ_LT827011.1|WP_001313612.1|308389_308977_-|transcriptional-regulator-BetI
MPKLGMQSIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYFRDKNGLLEATMRDITSQLRDAVLNRLHALPQGSAERRLQAIVGGNFDETQVSSAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPRQQAQEAGYGLAALIDGLWLRAALSGKPLDKPLAHSLTRHFITQHLPTD
>NZ_LT827011.1|WP_001339252.1|306903_308376_-|betaine-aldehyde-dehydrogenase
MSRMAEQQLYIHGGYTSATSGRTFETINPANGNVLATVQAAGREDVDRAVKSAQQGQKIWAAMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETSTVDIVTGADVLEYYAGLIPALEGCQIPLRETSFVYTRREPLGVVAGIGAWNYPIQIALWKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTDHPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMMANFFSSGQVCTNGTRVFVPTKCKAAFEQKVLARVERIRAGDVFDPQTNFGPLVSFPHRDNVLRYIAKGIEEGARVLCGGDVLKGDSFDNGAWVAPTVFTDCSDDMTIVREEIFGPVMSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMAKFQSIF
>NZ_LT827011.1|WP_000661657.1|319718_320669_+|carbamate-kinase-family-protein
MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGEFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIKT
>NZ_LT827011.1|WP_000662398.1|320678_322061_+|amidohydrolase-family-protein
MKENNSRREFLSQSGKMVTAAALFGPSVPLAHAGVAGTLNCEANNTMKITDPYYYLDNVLLETGFDYENGVAVQTRTARQTVEIQDGKIVALRENKQHPDATLPHYDAGGKLMLPTTRDMHIHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQPYTQERAEKLIDLLQSKGTTIARSHCNIEPVSGLKNLQNLQAVLARRQAGFECEIVAFPQHGLLLSKSEPLMREAMQAGAHYVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHLHETTPAGVAAINYMVETVEKTPQLKGKLTISHAFALATLNEQQVDELAHRMVAQQISIASTVPIGTLHMPLKQLHDKGVKVMTGTDSVIDHWSPYGLGDMLEKANLYAQLYIRPNEQNLSRSLFLATGDVLPLNEKGERVWPKAQDDASFVLVDASCSAEAVARISPRTATFHKGQLVWGSVAG
>NZ_LT827011.1|WP_000355698.1|322483_323482_+|NADPH-dependent-aldehyde-reductase-YahK
MDITRREPGPHDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKHAPGDLVGVGCIVDSCKHCEECEDGLENYCDYMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSESKREAAKALGADEVVNSRNADEMVAHVKSFDFILNTVAAPHNLDDFTTLLKRDGTITLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADRINEAYERMLRGDVKYRFVIDNRTLTD
>NZ_LT827011.1|WP_000976980.1|324363_325038_-|LysE-family-transporter
MMKLLHLFMDEITMDPLHAVYLTVGLFVITFFNPGANLFVVVQTSLASGRRAGVLTGLGVALGDAFYSGLGLFGLATLITQCEEIFSLIRIVGGAYLLWFAWCSSMRRHSTPQMSTLQQPISAPWYVFFRRGLITDLSNPQTVLFFISIFSVTLHAETPTWARLMAWAGIVLASIIWRVFLSQAFSLPAVRRAYGRMQRVASWVIGAIIGVFALRLIYEGVTQR
>NZ_LT827011.1|WP_000691951.1|325184_325460_+|DUF1471-domain-containing-protein
MKIISKMLVGALAFAVTNVYAAELMTKAEFEKVASQYEKIGDISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNKIHGTANIYKKK
>NZ_LT827011.1|WP_000941085.1|325560_327147_-|propionate-catabolism-operon-regulatory-protein-PrpR
MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLASERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGQFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFAAALRQGLQASETMLVHYDWPGNIRELRNMMERLALFLSVESTPDLTPQFLQLLLPELARESAKTPIPGLLTAQQALEKFNGDKTAAANYLGISRTTFWRRLKS
>NZ_LT827011.1|WP_000052189.1|327385_328267_+|methylisocitrate-lyase
MSLHSPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRICAAVDAKTDPDFVIMARTDALAVEGLDAAIERAEAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYESINYYQYEEKLDDLFARG
>NZ_LT827011.1|WP_001285876.1|328435_329605_+|2-methylcitrate-synthase
MSDTTILQNCTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAEHCEFEEVAHLLIHGKLPTRDELAAYKTKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGEKPSQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSDMYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSQEGGSLKMYNIADRLETVMWESKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYVGPEDRQFVALDKRQ
>NZ_LT827011.1|WP_000126705.1|329638_331090_+|2-methylcitrate-dehydratase
MTAQINNIRPEFDREIVDIVDYVMNYEISSRVAYDTAHYCLLDTLGCGLEALEYPACKKLLGAIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGTMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQFPTRQQQRILEVSLDRTRLEQMPVNEYLDLYVI
>NZ_LT827011.1|WP_000010312.1|331129_332941_+|propionate--CoA-ligase
MSFSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFARWFCEGRTNLCHNAIDRWLEKQPGALALIAVSSETEEERTFTFRQLHDEVNAVASMLRSLGVQRGDRVLVYMPMIAEAHITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIVSADAGARGGKIIPYKKLLDDAISQAQHQPRHVLLVDRGLAKMARVSGRDVDFASLRHQHIGARVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGGVFFCASDIGWVVGHSYIVYAPLLAGMATIVYEGLPTWPDCGVWWKIVEKYQVSRMFSAPTAIRVLKKFPTAEIRKHDLSSLEVLYLAGEPLDEPTASWVSNTLDVPVIDNYWQTESGWPIMAIARGLDDRPTRLGSPGVPMYGYNVQLLNEVTGEPCGVNEKGMLVVEGPLPPGCIQTIWGDDDRFVKTYWSLFSRPVYATFDWGIRDADGYHFILGRTDDVINVAGHRLGTREIEESISSHPVVAEVAVVGVKDALKGQVAVAFVIPKESDSLEDREVAHSQEKAIMALVDSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQAMEE

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Crispr_ID: NZ_LT827011_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT827011_2

2433638-2433751

Orphan

Consensus_repeat	Method
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT827011_2

>merge|NZ_LT827011|2|2433638-2433751|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCACTGAATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGGTTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

>NZ_LT827011|2|2|2433638-2433751|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CTGAATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGG
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT827011.1\|WP_001225827.1\|2413796_2414573_-\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_LT827011.1\|WP_012578952.1\|2426860_2430619_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_LT827011.1\|WP_000779093.1\|2436066_2437143_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_LT827011.1\|WP_000332036.1\|2433775_2434906_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_LT827011.1\|WP_001281253.1\|2423224_2425852_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_LT827011.1\|WP_122999373.1\|2416227_2420625_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_LT827011.1\|WP_000948732.1\|2437147_2438506_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_LT827011.1\|WP_048816141.1\|2421388_2423017_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_LT827011.1\|WP_000990770.1\|2425998_2426721_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_LT827011.1\|WP_000857274.1\|2438780_2440409_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_LT827011.1\|WP_000150332.1\|2443997_2444219_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
NZ_LT827011.1\|WP_001075184.1\|2431300_2433586_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_LT827011.1\|WP_000786553.1\|2412538_2413723_+\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_LT827011.1\|WP_001209937.1\|2440398_2441658_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_LT827011.1\|WP_001000377.1\|2441654_2442845_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_LT827011.1\|WP_000135040.1\|2434905_2435160_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_LT827011.1\|WP_001104514.1\|2414577_2416227_-\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_LT827011.1\|WP_001346849.1\|2420768_2421392_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_LT827011.1\|WP_000301020.1\|2435213_2435864_-\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_LT827011.1\|WP_000140603.1\|2443037_2443985_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167

Protein	Function_ID	Function_description	E-value
NZ_LT827011.1\|WP_001225827.1\|2413796_2414573_-\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	7.37186e-152
NZ_LT827011.1\|WP_012578952.1\|2426860_2430619_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_LT827011.1\|WP_000779093.1\|2436066_2437143_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_LT827011.1\|WP_000332036.1\|2433775_2434906_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_LT827011.1\|WP_001281253.1\|2423224_2425852_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_LT827011.1\|WP_122999373.1\|2416227_2420625_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_LT827011.1\|WP_000948732.1\|2437147_2438506_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_LT827011.1\|WP_048816141.1\|2421388_2423017_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_LT827011.1\|WP_000990770.1\|2425998_2426721_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	5.82994e-171
NZ_LT827011.1\|WP_000857274.1\|2438780_2440409_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_LT827011.1\|WP_000150332.1\|2443997_2444219_+\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	8.55013e-30
NZ_LT827011.1\|WP_001075184.1\|2431300_2433586_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_LT827011.1\|WP_000786553.1\|2412538_2413723_+\|acetyl-CoA-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_LT827011.1\|WP_001209937.1\|2440398_2441658_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_LT827011.1\|WP_001000377.1\|2441654_2442845_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_LT827011.1\|WP_000135040.1\|2434905_2435160_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_LT827011.1\|WP_001104514.1\|2414577_2416227_-\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	6.62563e-127
NZ_LT827011.1\|WP_001346849.1\|2420768_2421392_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	3.61424e-138
NZ_LT827011.1\|WP_000301020.1\|2435213_2435864_-\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.43661e-157
NZ_LT827011.1\|WP_000140603.1\|2443037_2443985_+\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0

>NZ_LT827011.1|WP_001075184.1|2431300_2433586_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMSKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_LT827011.1|WP_012578952.1|2426860_2430619_-|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSGNGAAAVIDSCQGYDIKASCQASRQSLSGNMQDWSIADGQWLIFSGMANNASGGAVFLQQGAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVKLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATNGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAVSMQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSASDQLVLNGNTAGNTTVVINPITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGDLFSRHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYAWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGHGVVIEPQTQVIYQGVQQDDFTAANHARVSQSQGDDIQMRLGLHSEWRTAVGVTPTLDLNYYHDPHATEIEEDGSTISDDAAKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_LT827011.1|WP_000990770.1|2425998_2426721_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKYAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_LT827011.1|WP_001281253.1|2423224_2425852_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_LT827011.1|WP_048816141.1|2421388_2423017_-|DUF2138-domain-containing-protein
MVLLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSITLNNETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWQASFGLEARTAEKTPVRQRIVVSAWLLGFGYQRLMPSFAGMRFEMGNDGWHSFLALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDGSAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_LT827011.1|WP_001346849.1|2420768_2421392_-|DUF1175-domain-containing-protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNGQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_LT827011.1|WP_122999373.1|2416227_2420625_-|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNSQFSPLKKYPLVEQFRYPLWQATSVEPQQGLKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKDARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGELVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFDKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQRIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEADTSDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVVLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEDMNFTLQPVNSNEIDSDALYLDEITLTSEQDAALRYGQVVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_LT827011.1|WP_001104514.1|2414577_2416227_-|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQTGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFANGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRMLQGETGYSEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_LT827011.1|WP_001225827.1|2413796_2414573_-|YfaP-family-protein
MRKIFLPLLLVALSPVAHGEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGAGVIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_LT827011.1|WP_000786553.1|2412538_2413723_+|acetyl-CoA-acetyltransferase
MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIQAAIERAKIDSQHIDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAIQAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGITAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTLVFSQDEFPKVDSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLNPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKTLGFDPEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIERLN
>NZ_LT827011.1|WP_000332036.1|2433775_2434906_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>NZ_LT827011.1|WP_000135040.1|2434905_2435160_+|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_LT827011.1|WP_000301020.1|2435213_2435864_-|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYHRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_LT827011.1|WP_000779093.1|2436066_2437143_-|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_LT827011.1|WP_000948732.1|2437147_2438506_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>NZ_LT827011.1|WP_000857274.1|2438780_2440409_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQVTFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVMGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTAALALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_LT827011.1|WP_001209937.1|2440398_2441658_+|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLKVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWHWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_LT827011.1|WP_001000377.1|2441654_2442845_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_LT827011.1|WP_000140603.1|2443037_2443985_+|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGEASPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKEILMTIAERLRQEGHQIGWQEGKIEGWQEGKLEGLQEGMHEQAIKIALRMLEQGFEREIVLAATQLTDADIPNCH
>NZ_LT827011.1|WP_000150332.1|2443997_2444219_+|hypothetical-protein
MTIAERLRQEGHQIGWQEGKIEGWQEGKLEGLQESMHEQAIKIALRMLEQGIDRDQVLAATQLSETDLAAKNH

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Crispr_ID: NZ_LT827011_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT827011_3

2577242-2577357

Orphan

Consensus_repeat	Method
CATCATGTGCGGTTGTTTGTGCGGCTTCATGTGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT827011_3

>merge|NZ_LT827011|3|2577242-2577357|CRISPRCasFinder
CATCATGTGCGGTTGTTTGTGCGGCTTCATGTGCGCTTTCATGTGCGGCATGTGCGCTGAAAGCCGCGCCATTACTGGCTTCGTCATGTGCGGCATCATGTGCGGTTGTTTGTGCG

>NZ_LT827011|3|3|2577242-2577357|CRISPRCasFinder
CATCATGTGCGGTTGTTTGTGCGGCTTCATGTGCG	CTTTCATGTGCGGCATGTGCGCTGAAAGCCGCGCCATTACTGGCTT
CGTCATGTGCGGCATCATGTGCGGTTGTTTGTGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT827011.1\|WP_000865171.1\|2582103_2582292_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT827011.1\|WP_000002231.1\|2573175_2573466_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_LT827011.1\|WP_000198444.1\|2580848_2581232_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT827011.1\|WP_000386655.1\|2573903_2574263_-\|DUF2591-family-protein	unknown	unknown	gnl\|CDD\|107039
NZ_LT827011.1\|WP_012578960.1\|2578094_2578391_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_LT827011.1\|WP_000994516.1\|2572631_2572820_-\|protein-ninH	unknown	unknown	gnl\|CDD\|283883
NZ_LT827011.1\|WP_001254259.1\|2574265_2574442_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|283078
NZ_LT827011.1\|WP_000736903.1\|2574962_2575403_-\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|368607
NZ_LT827011.1\|WP_000588958.1\|2579551_2579989_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT827011.1\|WP_001279421.1\|2573465_2573735_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT827011.1\|WP_001274760.1\|2578830_2579544_+\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224885
NZ_LT827011.1\|WP_001248389.1\|2575476_2576853_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273206
NZ_LT827011.1\|WP_000505906.1\|2581807_2582104_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT827011.1\|WP_000050903.1\|2579975_2580347_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371241
NZ_LT827011.1\|WP_000950970.1\|2573727_2573904_-\|protein-ninF	unknown	unknown	gnl\|CDD\|283468
NZ_LT827011.1\|WP_000167602.1\|2581290_2581761_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT827011.1\|WP_000437875.1\|2578529_2578730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370262
NZ_LT827011.1\|WP_012578958.1\|2574438_2574966_-\|phage-N-6-adenine-methyltransferase	unknown	unknown	gnl\|CDD\|273769
NZ_LT827011.1\|WP_001008199.1\|2572816_2573179_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|182075
NZ_LT827011.1\|WP_001244622.1\|2577799_2578072_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT827011.1\|WP_000002231.1\|2573175_2573466_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	7.70017e-50
NZ_LT827011.1\|WP_000386655.1\|2573903_2574263_-\|DUF2591-family-protein	gnl\|CDD\|107039	PHA01519, PHA01519, hypothetical protein.	4.6673e-20
NZ_LT827011.1\|WP_012578960.1\|2578094_2578391_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	4.84272e-35
NZ_LT827011.1\|WP_000994516.1\|2572631_2572820_-\|protein-ninH	gnl\|CDD\|283883	pfam06322, Phage_NinH, Phage NinH protein. This family consists of several phage NinH proteins. The function of this family is unknown.	7.68087e-23
NZ_LT827011.1\|WP_001254259.1\|2574265_2574442_-\|NinE-family-protein	gnl\|CDD\|283078	pfam05322, NinE, NINE Protein. This family consists of NINE proteins from several bacteriophages and from E. coli.	3.94976e-23
NZ_LT827011.1\|WP_000736903.1\|2574962_2575403_-\|recombination-protein-NinB	gnl\|CDD\|368607	pfam05772, NinB, NinB protein. The ninR region of phage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of E. coli, respectively, operate on phage lambda. NinB binds to single-stranded DNA.	1.36744e-58
NZ_LT827011.1\|WP_000050903.1\|2579975_2580347_+\|hypothetical-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	0.00432651
NZ_LT827011.1\|WP_001248389.1\|2575476_2576853_-\|AAA-family-ATPase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	1.97711e-110
NZ_LT827011.1\|WP_001274760.1\|2578830_2579544_+\|LexA-family-transcriptional-regulator	gnl\|CDD\|224885	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms].	2.79152e-56
NZ_LT827011.1\|WP_000437875.1\|2578529_2578730_-\|hypothetical-protein	gnl\|CDD\|370262	pfam09048, Cro, Cro. Members of this family are involved in the repression of transcription by binding as a homodimer to palindromic DNA operator sites in phage lambda: they repress genes expressed in early phage development and are necessary for the late stage of lytic growth. These proteins have a secondary structure consisting of three alpha-helices and three beta-sheets, and dimerize through interactions between the two antiparallel beta-strands.	1.02186e-30
NZ_LT827011.1\|WP_012578958.1\|2574438_2574966_-\|phage-N-6-adenine-methyltransferase	gnl\|CDD\|273769	TIGR01712, DNA_N-6-adenine-methyltransferase_M.T1, phage N-6-adenine-methyltransferase. This model is a fragment-mode model for a phage-borne DNA N-6-adenine-methyltransferase. [Mobile and extrachromosomal element functions, Prophage functions, DNA metabolism, Restriction/modification].	7.09684e-86
NZ_LT827011.1\|WP_001008199.1\|2572816_2573179_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	4.00861e-41
NZ_LT827011.1\|WP_000950970.1\|2573727_2573904_-\|protein-ninF	gnl\|CDD\|283468	pfam05810, NinF, NinF protein. This family consists of several bacteriophage NinF proteins as well as related sequences from E. coli.	2.1871e-20

>NZ_LT827011.1|WP_001248389.1|2575476_2576853_-|AAA-family-ATPase
MRQDIEASVIGGLLIGGLTPTASDVLATLEPEAFSIPLYRKAFEVIRKQARNRNLIDALMVAEACGEEHFTSILMTSKNCPSAANLKGYAGMVADNYHRRLVLEIMDEMREPIQSGTIDASSQAMDELVKRLSAIRKPRDEVKPVRLGEIITDYTDTLDRRLRNGEESDTLKTGIEELDAITGGMNAEDLVIIAARPGMGKTELALKIAEGVASRVLPGSDVRRGVLIFSMEMSALQIAERSIANAGRMSVSVLRNPASMDDEGWARVANGMNQLADLDVWVVDASRLSVEEIRSIAERHKQENPNLSLIMADYLGLIEKPKADRNDLAIAHISGSLKAMAKDLKTPVISLSQLSRDVEKRPNKRPTNADLRDSGSIEQDADSIIMLYREAVYDENSSAAPFAEIIVTKNRFGSLGTVYQRFCNGHFVACDQDEARQICTASNAPAARGRRYAQGADV
>NZ_LT827011.1|WP_000736903.1|2574962_2575403_-|recombination-protein-NinB
MKKLTFEIRSPAHQQNAIHAVQQILPDPTKPIVVTIQERNRSLDQNRKLWACLGDVSRQVEWHGRWLDAESWKCVFTAALKQQDVVPNLAGNGFVVIGQSTSRMRVGEFAELLELIQAFGTERGVKWSDEARLALEWKARWGDRAA
>NZ_LT827011.1|WP_012578958.1|2574438_2574966_-|phage-N-6-adenine-methyltransferase
MTIKSNTPAHDKDCWQTPLWLFDALDIEFGFWLDSAASDKNALCAHWLTEADDALNSEWISHGAIWNNPPYSNIRPWVEKAAEQCIQQRQTVVMLVPEDMSVGWFSKALESVDEVRIITDGRINFIEPSTGLEKKGNSKGSMLLIWRPFISPRRMFTTVSKAALMAIGQGVRMAE
>NZ_LT827011.1|WP_001254259.1|2574265_2574442_-|NinE-family-protein
MRRQRRSITDIICENCKYLPTKRSRNKRKPIPKESDVKTFNYTAHLWDIRWLRNRARK
>NZ_LT827011.1|WP_000386655.1|2573903_2574263_-|DUF2591-family-protein
MDYSQLSDFEINVAVFEAIHNGSPDYKEGENGDMVFVSFEGDIVNGDAVEVEVERGSFNPCANPAAAWPIIEKYRISIINLDEDEWGARGVAYCKSKRAIHENPLRAAMIVFLMMQRIQ
>NZ_LT827011.1|WP_000950970.1|2573727_2573904_-|protein-ninF
MLSPSQSLQYQKESVERALTCANCGQKLHVLEVHVCEYCCAELMSDPNSSMYEEEDDE
>NZ_LT827011.1|WP_001279421.1|2573465_2573735_-|hypothetical-protein
MSDFSELISFKKDREEMRTESVYYVQHRNKRSVLDQELVITGDLAFRTYKASMEMKDFPKCGSEREAALKLAEWMQRMAAAIENYWSEP
>NZ_LT827011.1|WP_000002231.1|2573175_2573466_-|DUF1364-domain-containing-protein
MANLRKEARGRECQVRIYGICNGNPETTVLAHYRMAGICGTGMKPDDLIGAWACSDCHAEIDRRTRILDNKDARLYHLEGVIRTQAILLKEGKIKS
>NZ_LT827011.1|WP_001008199.1|2572816_2573179_-|RusA-family-crossover-junction-endodeoxyribonuclease
MNEYQFVLPYPPSVNTYWRRRGSQYYISDKGQKYRKDVQQIIRQLKLDIFTKSRLRIKVIADVPDSRRRDLDNILKGLLDSLIHAGFAEDDEQFDDIRVIRGVKVPGGRLGIKITELENA
>NZ_LT827011.1|WP_000994516.1|2572631_2572820_-|protein-ninH
MNATIQTIPELLIQTRGNQTEVARMLSCARGTVLKYNRDSKGERHVIVNGVLMVKQGKRGRR
>NZ_LT827011.1|WP_001244622.1|2577799_2578072_-|hypothetical-protein
MRNKGFNPPDTHKEAKRLRFLRSIDERTQISFVKVARTELLKAEARALLPSLPKEEGYTFIPNAFLEKLLKEDISVSQFNNVLKVFRQGR
>NZ_LT827011.1|WP_012578960.1|2578094_2578391_-|hypothetical-protein
MTQASYSKPTQREIDRAETDLLINLSTLTQRGLAKMIGCHESKISRTDWRFIASVLCAFGMASDISPISRAFKYALDGLTNKKRPAATERSEQTQMEF
>NZ_LT827011.1|WP_000437875.1|2578529_2578730_-|hypothetical-protein
MEQRITLKDYAMRFGQTKTAKDLGVYQSAINKAIHAGRKIFLTINADGSVYAEEVKPFPSNKKTTA
>NZ_LT827011.1|WP_001274760.1|2578830_2579544_+|LexA-family-transcriptional-regulator
MSAKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALLAKILNVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYEYPVFSHVQAGMFSPELRTFTKGDAERWVSTTKKASDSAFWLEVEGNSMTAPTGSKPSFPDGMLILVDPEQAVEPGDFCIARLGGDEFTFKKLIRDSGQVFLQPLNPQYPMIPCNESCSVVGKVIASQWPEETFG
>NZ_LT827011.1|WP_000588958.1|2579551_2579989_+|hypothetical-protein
MIKERISYIIPIAMDEGNPVTPVLIYEMDKDSHEVDLSFGAFFIGLKATKKYSIGIEVFNAQEIPIPIDTKLYSNHKFFTVAEANDGETIVSTSMRINFPRVKIIKPGIFEVRASLVNPDKGEVIDVKSSFFDVKITGSVRDEFR
>NZ_LT827011.1|WP_000050903.1|2579975_2580347_+|hypothetical-protein
MSLDNKVAQLRPNQNISRPIGHYSTDDAYSRHGGGNGGGNMLEARVAKLESDVEYIKRDLAEVKSDIKSVDSRLSGIETSISSAKITIKASAVVVSFVFAFCAYIFGSYVSKILDALNGLVLK
>NZ_LT827011.1|WP_000198444.1|2580848_2581232_+|hypothetical-protein
MTRRTQFKGNSRSRRRERLKAKALANGVLAREEAISSEVLHRPTLSRAQIQAKGTHETPERIEDAKPIKFMAQDVIWQQKEYRRNLERAAIVYANEFGHKQPETGVCLPNVAIYAAGYRKSKQLTAR
>NZ_LT827011.1|WP_000167602.1|2581290_2581761_+|hypothetical-protein
MTKSWSVPFPESETEHEGMPVFWRFQATVEEDGIKIFALQYIAFHQTEHYAWLVPAHWIVNFKPAPNQWLQEWKQKRNRYAIKKVAKNAERSFAFPTKKLAIESLLRRKKYHLMRIKQDLAVVSTLVDGMKNIDTSTPDIEYNFGHNQETENWVFY
>NZ_LT827011.1|WP_000505906.1|2581807_2582104_+|hypothetical-protein
MGFKGTEGKWEIMMDGDEIKIIQADSLENGTGWRSYIAICEEVQCIEDANLIAAAPDLLEALQLLLNQSKNRTTTTYPEWYGAVNKGLAAIRKALGDK
>NZ_LT827011.1|WP_000865171.1|2582103_2582292_+|hypothetical-protein
MKVKITASNTSFISVGDITEVITNHDGTQVMWSDLCKRYERVSWCKLVWGVEYEEIPEMHDE

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Crispr_ID: NZ_LT827011_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT827011_4

4228122-4228323

Orphan

Consensus_repeat	Method
GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT827011_4

>merge|NZ_LT827011|4|4228122-4228323|PILER-CR
CGCATCCGGCAATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGTATCCGGCATACAGTGCCCGATGCGACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA

>NZ_LT827011|4|1|4228122-4228323|PILER-CR
CGCATCCGGCAATTGGTGCACGATGCCTGATGCGAC	GCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGC
CGTATCCGGCATACAGTGCCCGATGCGACGCTGCCG	CGTCTTATCGGGCCTACAAAAGTTCTGAACCGTAGACCGGATAAGGCGTTCACGCC
GCATCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT827011.1\|WP_001065496.1\|4242969_4243956_+\|stress-response-kinase-SrkA	unknown	unknown	gnl\|CDD\|236974
NZ_LT827011.1\|WP_000459600.1\|4223034_4223550_+\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179334
NZ_LT827011.1\|WP_000545665.1\|4233863_4235315_+\|Trk-system-potassium-transporter-TrkH	unknown	unknown	gnl\|CDD\|182698
NZ_LT827011.1\|WP_000444545.1\|4231879_4233211_+\|Xaa-Pro-dipeptidase	unknown	unknown	gnl\|CDD\|237444
NZ_LT827011.1\|WP_001298607.1\|4224370_4225153_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	unknown	unknown	gnl\|CDD\|182449
NZ_LT827011.1\|WP_000339809.1\|4225804_4227298_+\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	unknown	unknown	gnl\|CDD\|236796
NZ_LT827011.1\|WP_000109943.1\|4223552_4224329_+\|Sec-independent-protein-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
NZ_LT827011.1\|WP_000438704.1\|4228327_4229491_-\|acetyl-CoA-C-acyltransferase-FadA	unknown	unknown	gnl\|CDD\|181592
NZ_LT827011.1\|WP_000227958.1\|4219671_4220427_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_LT827011.1\|WP_000907613.1\|4241460_4241988_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|236750
NZ_LT827011.1\|WP_001340163.1\|4242623_4242893_+\|YihD-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_LT827011.1\|WP_000853959.1\|4235326_4235872_+\|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase	unknown	unknown	gnl\|CDD\|182966
NZ_LT827011.1\|WP_000965961.1\|4229500_4231690_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	unknown	unknown	gnl\|CDD\|183293
NZ_LT827011.1\|WP_001340167.1\|4222761_4223031_+\|Sec-independent-protein-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|179592
NZ_LT827011.1\|WP_000209826.1\|4227343_4228045_+\|NAD(P)H-flavin-reductase	unknown	unknown	gnl\|CDD\|236142
NZ_LT827011.1\|WP_000187543.1\|4221042_4222683_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310
NZ_LT827011.1\|WP_001340164.1\|4233210_4233825_+\|IMPACT-family-protein	unknown	unknown	gnl\|CDD\|183205
NZ_LT827011.1\|WP_001296603.1\|4220440_4221046_+\|ubiquinone-biosynthesis-protein-UbiJ	unknown	unknown	gnl\|CDD\|225706
NZ_LT827011.1\|WP_001052190.1\|4241969_4242554_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_LT827011.1\|WP_001192400.1\|4225149_4225638_-\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|181611

Protein	Function_ID	Function_description	E-value
NZ_LT827011.1\|WP_001065496.1\|4242969_4243956_+\|stress-response-kinase-SrkA	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0
NZ_LT827011.1\|WP_000459600.1\|4223034_4223550_+\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|179334	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB.	4.56825e-89
NZ_LT827011.1\|WP_000545665.1\|4233863_4235315_+\|Trk-system-potassium-transporter-TrkH	gnl\|CDD\|182698	PRK10750, PRK10750, Trk system potassium transporter TrkH.	0
NZ_LT827011.1\|WP_000444545.1\|4231879_4233211_+\|Xaa-Pro-dipeptidase	gnl\|CDD\|237444	PRK13607, PRK13607, proline dipeptidase; Provisional.	0
NZ_LT827011.1\|WP_001298607.1\|4224370_4225153_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	gnl\|CDD\|182449	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD.	0
NZ_LT827011.1\|WP_000339809.1\|4225804_4227298_+\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	gnl\|CDD\|236796	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase.	0
NZ_LT827011.1\|WP_000109943.1\|4223552_4224329_+\|Sec-independent-protein-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	0
NZ_LT827011.1\|WP_000438704.1\|4228327_4229491_-\|acetyl-CoA-C-acyltransferase-FadA	gnl\|CDD\|181592	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.	0
NZ_LT827011.1\|WP_000227958.1\|4219671_4220427_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	9.2375e-151
NZ_LT827011.1\|WP_000907613.1\|4241460_4241988_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|236750	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional.	1.11706e-122
NZ_LT827011.1\|WP_001340163.1\|4242623_4242893_+\|YihD-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	4.50483e-53
NZ_LT827011.1\|WP_000853959.1\|4235326_4235872_+\|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase	gnl\|CDD\|182966	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase.	2.80681e-127
NZ_LT827011.1\|WP_000965961.1\|4229500_4231690_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	gnl\|CDD\|183293	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB.	0
NZ_LT827011.1\|WP_001340167.1\|4222761_4223031_+\|Sec-independent-protein-translocase-subunit-TatA	gnl\|CDD\|179592	PRK03554, tatA, Sec-independent protein translocase subunit TatA.	2.9527e-43
NZ_LT827011.1\|WP_000209826.1\|4227343_4228045_+\|NAD(P)H-flavin-reductase	gnl\|CDD\|236142	PRK08051, fre, FMN reductase; Validated.	4.73079e-172
NZ_LT827011.1\|WP_000187543.1\|4221042_4222683_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
NZ_LT827011.1\|WP_001340164.1\|4233210_4233825_+\|IMPACT-family-protein	gnl\|CDD\|183205	PRK11568, PRK11568, IMPACT family protein.	1.36511e-152
NZ_LT827011.1\|WP_001296603.1\|4220440_4221046_+\|ubiquinone-biosynthesis-protein-UbiJ	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	5.01909e-94
NZ_LT827011.1\|WP_001052190.1\|4241969_4242554_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	6.47468e-98
NZ_LT827011.1\|WP_001192400.1\|4225149_4225638_-\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|181611	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH.	7.04858e-121

>NZ_LT827011.1|WP_000209826.1|4227343_4228045_+|NAD(P)H-flavin-reductase
MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI
>NZ_LT827011.1|WP_000339809.1|4225804_4227298_+|4-hydroxy-3-polyprenylbenzoate-decarboxylase
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPSTILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
>NZ_LT827011.1|WP_001192400.1|4225149_4225638_-|transcription/translation-regulatory-transformer-protein-RfaH
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPSTPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
>NZ_LT827011.1|WP_001298607.1|4224370_4225153_+|3'-5'-ssDNA/RNA-exonuclease-TatD
MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAVTEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQELAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF
>NZ_LT827011.1|WP_000109943.1|4223552_4224329_+|Sec-independent-protein-translocase-subunit-TatC
MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE
>NZ_LT827011.1|WP_000459600.1|4223034_4223550_+|Sec-independent-protein-translocase-subunit-TatB
MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNETAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP
>NZ_LT827011.1|WP_001340167.1|4222761_4223031_+|Sec-independent-protein-translocase-subunit-TatA
MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKISQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV
>NZ_LT827011.1|WP_000187543.1|4221042_4222683_+|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKPLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR
>NZ_LT827011.1|WP_001296603.1|4220440_4221046_+|ubiquinone-biosynthesis-protein-UbiJ
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLAALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKALRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
>NZ_LT827011.1|WP_000227958.1|4219671_4220427_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLKMGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQDTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF
>NZ_LT827011.1|WP_000438704.1|4228327_4229491_-|acetyl-CoA-C-acyltransferase-FadA
MEQVVIVDAIRTPMGRSKGGAFRHVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARDLGLKPRACVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV
>NZ_LT827011.1|WP_000965961.1|4229500_4231690_-|fatty-acid-oxidation-complex-subunit-alpha-FadB
MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAMAILRQAINGDLDWKAKRQPKLEPLKLSKIEAAMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDVETPKQAAVLGTGIMGGGIAYQSAWKDVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFNANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPARPVGDLKTA
>NZ_LT827011.1|WP_000444545.1|4231879_4233211_+|Xaa-Pro-dipeptidase
MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLDDHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPNSFWTEDVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRSFKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIVALNEHAAVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMTRDLKLA
>NZ_LT827011.1|WP_001340164.1|4233210_4233825_+|IMPACT-family-protein
MESWLIPAAPVTVVEEIKKSRFITLLEHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE
>NZ_LT827011.1|WP_000545665.1|4233863_4235315_+|Trk-system-potassium-transporter-TrkH
MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQFSLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE
>NZ_LT827011.1|WP_000853959.1|4235326_4235872_+|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase
MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMNSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTLK
>NZ_LT827011.1|WP_000907613.1|4241460_4241988_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLHFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQDG
>NZ_LT827011.1|WP_001052190.1|4241969_4242554_-|molybdenum-cofactor-guanylyltransferase-MobA
MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQVSGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDTPYIPHDLAVRLNHQRKDTPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAFMRLAGGHAVDFSDRKEAFINVNTPEELARWQEKR
>NZ_LT827011.1|WP_001340163.1|4242623_4242893_+|YihD-family-protein
MKCKRLNEVIELLQPAWQKDPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE
>NZ_LT827011.1|WP_001065496.1|4242969_4243956_+|stress-response-kinase-SrkA
MNNSAFTFQTLHPDTIMDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDGPMFVDLDDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY

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Crispr_ID: NZ_LT827011_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT827011_5

4513830-4513953

Orphan

Consensus_repeat	Method
GATGCGACGCTGTCGCGTCTTATCAGGCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT827011_5

>merge|NZ_LT827011|5|4513830-4513953|CRISPRCasFinder
GATGCGACGCTGTCGCGTCTTATCAGGCCTACAGCCGTTGCCGAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCAGCGCCTGATGCGCCGCTGTCGCGTCTTATCAGGCCTACA

>NZ_LT827011|5|4|4513830-4513953|CRISPRCasFinder
GATGCGACGCTGTCGCGTCTTATCAGGCCTACA	GCCGTTGCCGAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAACCAGCGCCT
GATGCGCCGCTGTCGCGTCTTATCAGGCCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT827011.1\|WP_071791941.1\|4520024_4521743_+\|heme-lyase-CcmF/NrfE-family-subunit	unknown	unknown	gnl\|CDD\|236675
NZ_LT827011.1\|WP_000106893.1\|4508502_4509852_+\|guanine/hypoxanthine-transporter-GhxP	unknown	unknown	gnl\|CDD\|225161
NZ_LT827011.1\|WP_000195192.1\|4519048_4520005_+\|cytochrome-c-nitrite-reductase-subunit-NrfD	unknown	unknown	gnl\|CDD\|274450
NZ_LT827011.1\|WP_001296650.1\|4524445_4525135_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_LT827011.1\|WP_000168305.1\|4504148_4504685_+\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_LT827011.1\|WP_001032535.1\|4521735_4522119_+\|heme-lyase-NrfEFG-subunit-NrfF	unknown	unknown	gnl\|CDD\|182265
NZ_LT827011.1\|WP_000357763.1\|4501071_4503894_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_LT827011.1\|WP_000412431.1\|4507491_4507956_+\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|184964
NZ_LT827011.1\|WP_000220273.1\|4518380_4519052_+\|cytochrome-c-nitrite-reductase-Fe-S-protein	unknown	unknown	gnl\|CDD\|274451
NZ_LT827011.1\|WP_001296646.1\|4513380_4513695_-\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_LT827011.1\|WP_001339453.1\|4505493_4507047_+\|c-di-GMP-phosphodiesterase-PdeC	unknown	unknown	gnl\|CDD\|227279
NZ_LT827011.1\|WP_000078221.1\|4513986_4515945_-\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_LT827011.1\|WP_000832549.1\|4511734_4513384_-\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
NZ_LT827011.1\|WP_000812897.1\|4522115_4522712_+\|heme-lyase-NrfEFG-subunit-NrfG	unknown	unknown	gnl\|CDD\|182415
NZ_LT827011.1\|WP_000196879.1\|4516336_4517773_+\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	unknown	unknown	gnl\|CDD\|236854
NZ_LT827011.1\|WP_001295391.1\|4517817_4518384_+\|cytochrome-c-nitrite-reductase-pentaheme-subunit	unknown	unknown	gnl\|CDD\|183264
NZ_LT827011.1\|WP_000019358.1\|4507082_4507406_-\|superoxide-response-transcriptional-regulator-SoxS	unknown	unknown	gnl\|CDD\|182314
NZ_LT827011.1\|WP_000402206.1\|4510002_4511652_+\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|129911
NZ_LT827011.1\|WP_000789589.1\|4523054_4524368_+\|glutamate/aspartate:proton-symporter-GltP	unknown	unknown	gnl\|CDD\|183075
NZ_LT827011.1\|WP_001304710.1\|4504783_4505065_-\|YjcB-family-protein	unknown	unknown	gnl\|CDD\|374240

Protein	Function_ID	Function_description	E-value
NZ_LT827011.1\|WP_071791941.1\|4520024_4521743_+\|heme-lyase-CcmF/NrfE-family-subunit	gnl\|CDD\|236675	PRK10369, PRK10369, heme lyase subunit NrfE; Provisional.	0
NZ_LT827011.1\|WP_000106893.1\|4508502_4509852_+\|guanine/hypoxanthine-transporter-GhxP	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	4.64811e-148
NZ_LT827011.1\|WP_000195192.1\|4519048_4520005_+\|cytochrome-c-nitrite-reductase-subunit-NrfD	gnl\|CDD\|274450	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader Pfam protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase. [Energy metabolism, Electron transport].	3.44585e-151
NZ_LT827011.1\|WP_001296650.1\|4524445_4525135_-\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	3.94405e-26
NZ_LT827011.1\|WP_000168305.1\|4504148_4504685_+\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	5.9892e-116
NZ_LT827011.1\|WP_001032535.1\|4521735_4522119_+\|heme-lyase-NrfEFG-subunit-NrfF	gnl\|CDD\|182265	PRK10144, PRK10144, formate-dependent nitrite reductase complex subunit NrfF; Provisional.	5.24446e-77
NZ_LT827011.1\|WP_000357763.1\|4501071_4503894_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_LT827011.1\|WP_000412431.1\|4507491_4507956_+\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|184964	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR.	1.21857e-110
NZ_LT827011.1\|WP_000220273.1\|4518380_4519052_+\|cytochrome-c-nitrite-reductase-Fe-S-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.28773e-148
NZ_LT827011.1\|WP_001296646.1\|4513380_4513695_-\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	3.7783e-51
NZ_LT827011.1\|WP_001339453.1\|4505493_4507047_+\|c-di-GMP-phosphodiesterase-PdeC	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NZ_LT827011.1\|WP_000078221.1\|4513986_4515945_-\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_LT827011.1\|WP_000832549.1\|4511734_4513384_-\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_LT827011.1\|WP_000812897.1\|4522115_4522712_+\|heme-lyase-NrfEFG-subunit-NrfG	gnl\|CDD\|182415	PRK10370, PRK10370, formate-dependent nitrite reductase complex subunit NrfG; Provisional.	1.46084e-110
NZ_LT827011.1\|WP_000196879.1\|4516336_4517773_+\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
NZ_LT827011.1\|WP_001295391.1\|4517817_4518384_+\|cytochrome-c-nitrite-reductase-pentaheme-subunit	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	2.32405e-110
NZ_LT827011.1\|WP_000019358.1\|4507082_4507406_-\|superoxide-response-transcriptional-regulator-SoxS	gnl\|CDD\|182314	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS.	1.5374e-64
NZ_LT827011.1\|WP_000402206.1\|4510002_4511652_+\|Na+/H+-antiporter	gnl\|CDD\|129911	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309., Na+/H+ antiporter, bacterial form. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_LT827011.1\|WP_000789589.1\|4523054_4524368_+\|glutamate/aspartate:proton-symporter-GltP	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	0
NZ_LT827011.1\|WP_001304710.1\|4504783_4505065_-\|YjcB-family-protein	gnl\|CDD\|374240	pfam15940, YjcB, Family of unknown function. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	1.31294e-40

>NZ_LT827011.1|WP_001296646.1|4513380_4513695_-|DUF485-domain-containing-protein
MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLNPNTSVTRGIPVGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQAS
>NZ_LT827011.1|WP_000832549.1|4511734_4513384_-|cation/acetate-symporter-ActP
MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVVFTLGITYWASKRVRSRNDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGHLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFKKGATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMLGGWLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISVAFLGIWLFSATDNSAEGARERELFRAQFIRSQTGFGVEQGRAH
>NZ_LT827011.1|WP_000402206.1|4510002_4511652_+|Na+/H+-antiporter
MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGFLIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGWLWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFPARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSILEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ
>NZ_LT827011.1|WP_000106893.1|4508502_4509852_+|guanine/hypoxanthine-transporter-GhxP
MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFTTFPVMMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMVGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI
>NZ_LT827011.1|WP_000412431.1|4507491_4507956_+|redox-sensitive-transcriptional-activator-SoxR
MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIREAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN
>NZ_LT827011.1|WP_000019358.1|4507082_4507406_-|superoxide-response-transcriptional-regulator-SoxS
MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSDYRHRL
>NZ_LT827011.1|WP_001339453.1|4505493_4507047_+|c-di-GMP-phosphodiesterase-PdeC
MSHRARHQLLAFPGIIFLVLFPIILSLWIAFFWAKSEVNNQLRIFAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDNHFLCSSLIASVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPLFWSEVMSDDPTLQWGVYDTVTKTFFSLSNEASAATFSPLIHLNDLTVQRNGYLYATVYSTKRPIAAIVATSYQRLITHFYNHLIFALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYYQPIIDIKTEKCIGAEALLRWPGEQGQVMNPAEFIPLAEKEGMIEQVTDYVIDNVFRDLGAYLATHTDRYVSINLSASDFHTSRLIARTNQKTEQHAVRPQQIKFEVTEHAFLDVDKMTPIILAFRKAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIAEHIIELAHSLGLKTIAEGVETEAQVNWLRKHGVRYCQGWFFAKAMPPQVFMQWMG
>NZ_LT827011.1|WP_001304710.1|4504783_4505065_-|YjcB-family-protein
MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRADYVGLAVISSGLGVVSACWFAMGLLGITMADITAIWHNIESVMVEEMNQTPPQWPMILT
>NZ_LT827011.1|WP_000168305.1|4504148_4504685_+|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF
>NZ_LT827011.1|WP_000357763.1|4501071_4503894_-|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLYARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEAPWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPML
>NZ_LT827011.1|WP_000078221.1|4513986_4515945_-|acetate--CoA-ligase
MSQIHKHTIPANIADRCLINPQQYEAMYQQSINAPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDASQSKHISYKELHRDVCRFANTLLELGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITSDEGVRAGRSIPLKKNVDDALKNPNVTSVEHVVVLKRTGGKIDWQEGRDLWWHDLVEQASDQHQAEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAALTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMAQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPALVDNEGNPLEGATEGSLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS
>NZ_LT827011.1|WP_000196879.1|4516336_4517773_+|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit
MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPATPVTVEAKNETFAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVRETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHGKNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQSINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHMHAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQIKAEKQDFIKTVIPQWEEQARKNGLLSQ
>NZ_LT827011.1|WP_001295391.1|4517817_4518384_+|cytochrome-c-nitrite-reductase-pentaheme-subunit
MSVLRSLLTAGVLASGLLWSLNGITATPAAQASDDRYEVTQQRNPDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEPMYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRIKICVDCHSDQRTNPNFNPASVPLLKEQP
>NZ_LT827011.1|WP_000220273.1|4518380_4519052_+|cytochrome-c-nitrite-reductase-Fe-S-protein
MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDESLCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVDVCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTHLQAGKLPACVEACPTKALTFGNLDDPSSEISQLLRQKPTYRYKLALGTKPKLYRVPFKYGEVSQ
>NZ_LT827011.1|WP_000195192.1|4519048_4520005_+|cytochrome-c-nitrite-reductase-subunit-NrfD
MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRVYPQAGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVHRMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPMLLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA
>NZ_LT827011.1|WP_071791941.1|4520024_4521743_+|heme-lyase-CcmF/NrfE-family-subunit
MDVFLPEVGFLALLLSLGVNVLTPLTAFAGVRLRWPAMMRLTCIGILAQFALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEGRDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDGTCARICWRWALPGWSALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRHWSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFGLFALISLASLALYGWRARDGGPAVRFSGLSREMLILATLLLFCTVLLIVLVGTLYPMIYGLLGWGRLSVGAPYFNRATLPFGMLMLVVIVLATFVSGKRAQLPALLAHAGVLLFAAGIVVSSVSRQEISLNLQPGQQVMLAGYTFRFGRLDLQAKGNYTSEKAIVALFDHQQRIGELTPERRFYEARRQQMMEPSIRWNGIHDWYAVMGEKTGADRYAFRLYVQSGVRWIWGGGLLMISGALLSGWRGRKRDE
>NZ_LT827011.1|WP_001032535.1|4521735_4522119_+|heme-lyase-NrfEFG-subunit-NrfF
MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQEQALNIASQLRCPQCQNQNLLESNAPVAVSMRHQVYTMVEEGKSEVEIIDWMTERYGDFVRYNPPLTGQTLVLWALPVVLLLLMALILWRVRAKR
>NZ_LT827011.1|WP_000812897.1|4522115_4522712_+|heme-lyase-NrfEFG-subunit-NrfG
MKQPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVRAEYQRQRDPLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTVQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD
>NZ_LT827011.1|WP_000789589.1|4523054_4524368_+|glutamate/aspartate:proton-symporter-GltP
MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPAGDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEMLPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVTVANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYSTASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGIDLSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMARTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ
>NZ_LT827011.1|WP_001296650.1|4524445_4525135_-|sel1-repeat-family-protein
MKKIITLMLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDLSKAEYWAQKAADSGDADACALLAQIKITNPVSLDYPQAKVLAEKAAQAGSKEGEVTLAHILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKADDDKATWYFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEKLTNG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT827011_5	5.1\|4513863\|58\|NZ_LT827011\|CRISPRCasFinder	4513863-4513920	58	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14191-14248	0	1.0
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194046-194083	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194139-194176	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194232-194269	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204540-204577	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204633-204670	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204726-204763	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195374-195411	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195467-195504	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195560-195597	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176329-176366	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176422-176459	1	0.974
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176515-176552	1	0.974
NZ_LT827011_3	3.1\|2577277\|46\|NZ_LT827011\|CRISPRCasFinder	2577277-2577322	46	LC487996	Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence	15760-15805	1	0.978
NZ_LT827011_3	3.1\|2577277\|46\|NZ_LT827011\|CRISPRCasFinder	2577277-2577322	46	MT833387	Escherichia phage HF4s, complete genome	30677-30722	1	0.978
NZ_LT827011_3	3.1\|2577277\|46\|NZ_LT827011\|CRISPRCasFinder	2577277-2577322	46	JQ011316	Escherichia phage TL-2011a, partial genome	12041-12086	2	0.957
NZ_LT827011_3	3.1\|2577277\|46\|NZ_LT827011\|CRISPRCasFinder	2577277-2577322	46	MT740315	Escherichia phage JEP4, complete genome	30108-30153	2	0.957
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	MF374379	Escherichia phage DN1, complete genome	31109-31146	6	0.842
NZ_LT827011_3	3.1\|2577277\|46\|NZ_LT827011\|CRISPRCasFinder	2577277-2577322	46	MT813197	Escherichia phage vB_EcoP_Kapi1, complete genome	9866-9911	6	0.87
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229328-229365	8	0.789
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239822-239859	8	0.789
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230734-230771	8	0.789
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211704-211741	8	0.789
NZ_LT827011_4	4.2\|4228257\|56\|NZ_LT827011\|PILER-CR	4228257-4228312	56	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	13988-14043	9	0.839
NZ_LT827011_5	5.1\|4513863\|58\|NZ_LT827011\|CRISPRCasFinder	4513863-4513920	58	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31294-31351	9	0.845
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_CP019203	Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence	107556-107593	10	0.737
NZ_LT827011_1	1.1\|319532\|38\|NZ_LT827011\|CRISPRCasFinder	319532-319569	38	NZ_LN868945	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence	74014-74051	10	0.737
NZ_LT827011_4	4.2\|4228257\|56\|NZ_LT827011\|PILER-CR	4228257-4228312	56	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87116-87171	11	0.804
NZ_LT827011_5	5.1\|4513863\|58\|NZ_LT827011\|CRISPRCasFinder	4513863-4513920	58	NZ_CP053046	Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence	58261-58318	13	0.776
NZ_LT827011_4	4.1\|4228158\|63\|NZ_LT827011\|PILER-CR	4228158-4228220	63	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87115-87177	15	0.762
NZ_LT827011_5	5.1\|4513863\|58\|NZ_LT827011\|CRISPRCasFinder	4513863-4513920	58	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	63884-63941	15	0.741
NZ_LT827011_5	5.1\|4513863\|58\|NZ_LT827011\|CRISPRCasFinder	4513863-4513920	58	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	110182-110239	15	0.741

1. spacer 5.1|4513863|58|NZ_LT827011|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 0, identity: 1.0

gccgttgccgaatgtaggccggataaggcgttcacgccgcatccggcaaccagcgcct	CRISPR spacer
gccgttgccgaatgtaggccggataaggcgttcacgccgcatccggcaaccagcgcct	Protospacer
**********************************************************

2. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

3. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

4. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
gtggcgcgagaatctgtaggcctgataagcgtagcgca	Protospacer
*******.******************************

5. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

6. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

7. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
gtggcgcgagaatctgtaggcctgataagcgtagcgca	Protospacer
*******.******************************

8. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

9. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

10. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
gtggcgcgagaatctgtaggcctgataagcgtagcgca	Protospacer
*******.******************************

11. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

12. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
atggcgcaagaatctgtaggcctgataagcgtagcgca	Protospacer
.*************************************

13. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 1, identity: 0.974

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
gtggcgcgagaatctgtaggcctgataagcgtagcgca	Protospacer
*******.******************************

14. spacer 3.1|2577277|46|NZ_LT827011|CRISPRCasFinder matches to LC487996 (Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence) position: , mismatch: 1, identity: 0.978

ctttcatgtgcggcatgtgcgctgaaagccgcgccattactggctt	CRISPR spacer
ctttcatgtgcggcatgtacgctgaaagccgcgccattactggctt	Protospacer
******************.***************************

15. spacer 3.1|2577277|46|NZ_LT827011|CRISPRCasFinder matches to MT833387 (Escherichia phage HF4s, complete genome) position: , mismatch: 1, identity: 0.978

ctttcatgtgcggcatgtgcgctgaaagccgcgccattactggctt	CRISPR spacer
ctttcatgtgcggcatgtgcgctgaaatccgcgccattactggctt	Protospacer
*************************** ******************

16. spacer 3.1|2577277|46|NZ_LT827011|CRISPRCasFinder matches to JQ011316 (Escherichia phage TL-2011a, partial genome) position: , mismatch: 2, identity: 0.957

ctttcatgtgcggcatgtgcgctgaaagccgcgccattactggctt	CRISPR spacer
ctttcatgtgcggcatgttcgctgaaatccgcgccattactggctt	Protospacer
****************** ******** ******************

17. spacer 3.1|2577277|46|NZ_LT827011|CRISPRCasFinder matches to MT740315 (Escherichia phage JEP4, complete genome) position: , mismatch: 2, identity: 0.957

ctttcatgtgcggcatgtgcgctgaaagccgcgccattactggctt	CRISPR spacer
ctttcatgtgtggcatgtacgctgaaagccgcgccattactggctt	Protospacer
**********.*******.***************************

18. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 6, identity: 0.842

-gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
tattgcg-gagaaaatgtaggcctgataagcgtagcgca	Protospacer
 .* *** .****  ************************

19. spacer 3.1|2577277|46|NZ_LT827011|CRISPRCasFinder matches to MT813197 (Escherichia phage vB_EcoP_Kapi1, complete genome) position: , mismatch: 6, identity: 0.87

ctttcatgtgcggcatgtgcgctgaaagccgcgccattactggctt	CRISPR spacer
gttgtttgtgcggcatgtactctgaaagccgcgccattactggctt	Protospacer
 ** . ************.* *************************

20. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.789

gtggcgcaagaatctgtaggcctgataagcgtagcgca----	CRISPR spacer
gtggcgcgagaatttgtaggcctgataag----acgcgttag	Protospacer
*******.*****.***************    .***.

21. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.789

gtggcgcaagaatctgtaggcctgataagcgtagcgca----	CRISPR spacer
gtggcgcgagaatttgtaggcctgataag----acgcgttag	Protospacer
*******.*****.***************    .***.

22. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.789

gtggcgcaagaatctgtaggcctgataagcgtagcgca----	CRISPR spacer
gtggcgcgagaatttgtaggcctgataag----acgcgttag	Protospacer
*******.*****.***************    .***.

23. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.789

gtggcgcaagaatctgtaggcctgataagcgtagcgca----	CRISPR spacer
gtggcgcgagaatttgtaggcctgataag----acgcgttag	Protospacer
*******.*****.***************    .***.

24. spacer 4.2|4228257|56|NZ_LT827011|PILER-CR matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.839

tacag-tgcccgatgcgacgctgccgcgtcttatcgggcctacaaa-agttctgaacc	CRISPR spacer
-acggatgcccgatgcgacgctggcgcgtcttatcgggcctacaaacggccccgaat-	Protospacer
 **.* ***************** ********************** .*..*.***.

25. spacer 5.1|4513863|58|NZ_LT827011|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.845

gccgttgccgaatgtaggccggataaggcgttcacgccgcatccggcaaccagcgcct--	CRISPR spacer
gccgttgccaaatgtaggccggataaggcgtttacgccgcatccggcatt---tgcttag	Protospacer
*********.**********************.*************** .   .**.*

26. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_CP019203 (Salmonella enterica subsp. enterica serovar Infantis strain CFSAN003307 plasmid pCFSAN003307, complete sequence) position: , mismatch: 10, identity: 0.737

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
acgtttctgcaacctgtaggcctgataagcgtagcgcc	Protospacer
..* . * . **.************************

27. spacer 1.1|319532|38|NZ_LT827011|CRISPRCasFinder matches to NZ_LN868945 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.737

gtggcgcaagaatctgtaggcctgataagcgtagcgca	CRISPR spacer
acgtttctgcaacctgtaggcctgataagcgtagcgcc	Protospacer
..* . * . **.************************

28. spacer 4.2|4228257|56|NZ_LT827011|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.804

tacagtgcccgatgcgacgctgccgcgtcttatcgggcctacaaaagttctgaacc----	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaa----tcaatcgctt	Protospacer
.**..****.************************.***********    * **.*

29. spacer 5.1|4513863|58|NZ_LT827011|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 13, identity: 0.776

--gccgttgccgaatgtaggccggataaggcgttcacgccgcatccggcaaccagcgcct	CRISPR spacer
caaccg--ggctaatgtatgccggataaggcgtttacgccgcatccggcaacctgacata	Protospacer
  .***  * * ****** ***************.****************** *   .

30. spacer 4.1|4228158|63|NZ_LT827011|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.762

ttggtgcacgatgcctgatgcgacgctggcgcgtcttatcaggcctacattggtgccgga	CRISPR spacer
tcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctaca--------aaa	Protospacer
*.************************** ********************        ..*

31. spacer 5.1|4513863|58|NZ_LT827011|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 15, identity: 0.741

gccgttgccgaa----tgtaggccggataaggcgttcacgccgcatccggcaaccagcgc	CRISPR spacer
----ttttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagcta	Protospacer
    ** .*. .    *************************************  ***

32. spacer 5.1|4513863|58|NZ_LT827011|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 15, identity: 0.741

gccgttgccgaa----tgtaggccggataaggcgttcacgccgcatccggcaaccagcgc	CRISPR spacer
----ttttcatgattttgtaggccggataaggcgttcacgccgcatccggcaagaagcta	Protospacer
    ** .*. .    *************************************  ***

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

720890 : 773583

Enterobacteria_phage(48.39%)

lysis,integrase,tail,capsid,transposase,terminase,portal,head,holin

attL 720803:720817|attR 771763:771777

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
720803:720817	attL	NA	NA	NA	NA
WP_000533654.1\|720890_721961_-\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	5.6e-201	99.4
WP_001303849.1\|721938_722157_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000545741.1\|722196_722364_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	4.9e-27	98.2
WP_000002111.1\|722436_722721_-	ASCH domain-containing protein	A0A2D1GLL3	Escherichia_phage	1.0e-48	96.8
WP_000208133.1\|722713_723346_-	DUF551 domain-containing protein	G9L6B4	Escherichia_phage	2.0e-81	90.5
WP_000360279.1\|723356_723554_-	hypothetical protein	A0A1I9SEY0	Klebsiella_phage	1.5e-30	84.6
WP_001339358.1\|723555_723951_-	hypothetical protein	A0A088CE95	Shigella_phage	3.3e-66	96.9
WP_001014291.1\|723953_724145_-	hypothetical protein	K7PKJ7	Enterobacteria_phage	3.3e-27	100.0
WP_000034177.1\|724146_724785_-	ead/Ea22-like family protein	H6WZG2	Escherichia_phage	1.0e-93	98.3
WP_000004315.1\|724771_725041_-	hypothetical protein	Q1MVG1	Enterobacteria_phage	1.1e-17	55.2
WP_001214458.1\|725037_725205_-	DUF2737 family protein	Q716F2	Shigella_phage	1.2e-22	96.4
WP_001111304.1\|725215_725512_-	DUF2856 family protein	A5VWB0	Enterobacteria_phage	7.8e-52	100.0
WP_000098523.1\|725525_726032_-	single-stranded DNA-binding protein	K7PHK1	Enterobacteria_phage	6.8e-80	98.8
WP_000018648.1\|726028_726496_-	HNH endonuclease	A0A2I7QWC6	Vibrio_phage	1.0e-45	61.3
WP_000365292.1\|726496_727204_-	recombinase	Q716E7	Shigella_phage	3.8e-137	99.6
WP_001183771.1\|727458_727629_-	hypothetical protein	A0A192Y6R1	Salmonella_phage	1.3e-24	100.0
WP_000065351.1\|727704_728073_-	DUF2528 family protein	M1FPD2	Enterobacteria_phage	4.5e-65	99.2
WP_000387878.1\|728252_728576_-	hypothetical protein	K7PKY8	Enterobacterial_phage	2.5e-59	98.1
WP_001077327.1\|728638_728863_-	hypothetical protein	K7PJZ1	Enterobacterial_phage	8.0e-33	100.0
WP_000216182.1\|728866_729175_-	hypothetical protein	A0A075B8K6	Enterobacteria_phage	3.0e-30	69.6
WP_000971597.1\|729173_729386_+	hypothetical protein	NA	NA	NA	NA
WP_000633167.1\|729617_730442_-	hypothetical protein	NA	NA	NA	NA
WP_000250470.1\|730646_731354_-	helix-turn-helix transcriptional regulator	G9L676	Escherichia_phage	2.2e-132	98.7
WP_001180318.1\|731432_731660_+	helix-turn-helix domain-containing protein	G9L677	Escherichia_phage	7.8e-36	100.0
WP_000438488.1\|731766_732066_+	hypothetical protein	A0A0P0ZBJ0	Stx2-converting_phage	1.4e-48	97.0
WP_000062366.1\|732228_733005_+	helix-turn-helix domain-containing protein	A0A0P0ZC04	Stx2-converting_phage	2.1e-136	98.4
WP_012578852.1\|733112_734993_+	toprim domain-containing protein	K7PK08	Enterobacteria_phage	0.0e+00	99.7
WP_000736893.1\|735070_735511_+	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.6e-80	99.3
WP_001254251.1\|735507_735690_+	NinE family protein	Q716C5	Shigella_phage	1.3e-28	100.0
WP_000567008.1\|735686_735866_+	protein ninF	M1FPE8	Enterobacteria_phage	1.7e-14	86.0
WP_024201048.1\|736225_736399_+	ninF	NA	NA	NA	NA
WP_000237093.1\|736388_736781_+	hypothetical protein	A0A1B0VBU7	Salmonella_phage	2.9e-14	35.3
WP_000002251.1\|736773_737064_+	DUF1364 domain-containing protein	K7PK25	Enterobacteria_phage	7.1e-50	97.9
WP_000994516.1\|737419_737608_+	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_000750155.1\|737819_738779_-	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_032160865.1\|739117_739240_+	YlcG family protein	NA	NA	NA	NA
WP_001097234.1\|739254_739944_+	hypothetical protein	I6PDF8	Cronobacter_phage	4.5e-58	47.6
WP_001302581.1\|740128_740872_+	hypothetical protein	NA	NA	NA	NA
WP_000499454.1\|740957_741116_+	DUF3927 family protein	NA	NA	NA	NA
WP_000023276.1\|741414_743265_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	95.6
WP_024164617.1\|743703_743919_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	7.7e-33	98.6
WP_000075132.1\|743918_744416_+	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000092318.1\|744412_744850_+\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	2.0e-72	100.0
WP_000881326.1\|744999_745617_+	Rha family transcriptional regulator	A0A1R3Y613	Salmonella_virus	6.5e-93	85.9
WP_001307652.1\|745804_745999_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000235436.1\|746393_746903_+\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_012578855.1\|746874_748803_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.2e-262	66.4
WP_000259002.1\|748786_748993_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_012578856.1\|748989_750582_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	1.9e-184	61.1
WP_001254036.1\|750571_752077_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
WP_000256818.1\|752113_752461_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.0e-22	58.1
WP_000522630.1\|752518_753547_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-114	61.3
WP_000201528.1\|753598_753973_+	hypothetical protein	NA	NA	NA	NA
WP_001204536.1\|753965_754319_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	6.7e-42	70.1
WP_000975033.1\|754333_754867_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.9e-57	65.1
WP_000683066.1\|754863_755259_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	3.9e-59	83.2
WP_000106788.1\|755266_756019_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	8.2e-130	94.8
WP_000479086.1\|756032_756464_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	4.8e-42	68.1
WP_000533431.1\|756490_756904_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.0e-41	82.8
WP_000082311.1\|756884_759446_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	93.6
WP_000847401.1\|759442_759772_+\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	6.0e-53	92.7
WP_001152649.1\|759771_760470_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.9e-131	97.8
WP_000140734.1\|760475_761219_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.0e-148	96.8
WP_000090850.1\|761155_761758_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.2e-88	85.1
WP_000515449.1\|761818_765232_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	96.0
WP_001233161.1\|765301_765901_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	6.7e-111	99.5
WP_000279191.1\|765965_767279_+\|tail	prophage tail fiber N-terminal domain-containing protein	H6WZM9	Escherichia_phage	4.4e-78	97.7
WP_001101709.1\|767280_767550_+\|tail	phage tail fiber C-terminal domain-containing protein	B6DZB8	Enterobacteria_phage	2.7e-43	96.6
WP_000950983.1\|767655_768537_+	hypothetical protein	A5LH48	Enterobacteria_phage	3.3e-146	90.1
WP_001002868.1\|770012_770393_+	hypothetical protein	NA	NA	NA	NA
WP_000354291.1\|770476_770698_+	hypothetical protein	NA	NA	NA	NA
WP_001121571.1\|770710_771364_-	type III secretion system effector ADP-ribosyltransferase EspJ	NA	NA	NA	NA
WP_000767425.1\|771867_772344_-	kinase inhibitor	NA	NA	NA	NA
771763:771777	attR	NA	NA	NA	NA
WP_000817269.1\|772452_773583_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.5e-191	86.4

DBSCAN-SWA_2

816285 : 925828

113

Salmonella_phage(60.71%)

lysis,protease,integrase,tail,capsid,transposase,terminase,plate,tRNA,portal,head

attL 852346:852371|attR 886489:886514

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000526113.1\|816285_816744_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	32.3
WP_001054650.1\|816856_818440_-	phosphoethanolamine transferase	NA	NA	NA	NA
WP_001001761.1\|818711_818840_-	manganase accumulation protein MntS	NA	NA	NA	NA
WP_000091016.1\|819025_819493_+	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_000056448.1\|819489_820608_+	anion transporter	NA	NA	NA	NA
WP_001056384.1\|820665_821586_-	L,D-transpeptidase	NA	NA	NA	NA
WP_000961458.1\|821804_823397_+	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	6.9e-62	28.7
WP_000114251.1\|823596_824412_-	sugar-phosphatase YbiV	NA	NA	NA	NA
WP_000209390.1\|824556_826989_-	glycyl radical protein	A0A076YHZ7	Citrobacter_phage	1.4e-08	43.5
WP_001340108.1\|826994_827894_-	glycyl-radical enzyme activating protein	NA	NA	NA	NA
WP_000424899.1\|828024_828687_+	fructose-6-phosphate aldolase	C7BV14	Synechococcus_phage	6.3e-25	32.7
WP_000829253.1\|828762_829512_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_000397327.1\|829511_830747_-	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_000513804.1\|830950_831916_+	beta-aspartyl-peptidase	NA	NA	NA	NA
WP_001409358.1\|831902_833774_+	glutathione ABC transporter ATP-binding protein GsiA	G9BWD6	Planktothrix_phage	8.8e-16	29.7
WP_000090150.1\|833793_835332_+	glutathione ABC transporter substrate-binding protein GsiB	NA	NA	NA	NA
WP_000936024.1\|835349_836270_+	glutathione ABC transporter permease GsiC	NA	NA	NA	NA
WP_001236044.1\|836272_837184_+	glutathione ABC transporter permease GsiD	NA	NA	NA	NA
WP_000950329.1\|837360_839709_+	CHASE9 sensor domain-containing protein	NA	NA	NA	NA
WP_000086882.1\|839716_841045_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_000049367.1\|841091_842417_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_000497141.1\|842629_843013_+	biofilm formation regulator BssR	NA	NA	NA	NA
WP_000555018.1\|843123_844239_+	aldose sugar dehydrogenase YliI	NA	NA	NA	NA
WP_001340105.1\|844235_844862_-	glutathione S-transferase GstB	NA	NA	NA	NA
WP_000195961.1\|845108_846311_+	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	8.2e-100	48.0
WP_000450116.1\|846357_847116_-	DNA-binding transcriptional repressor DeoR	NA	NA	NA	NA
WP_000892317.1\|847173_847770_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_001180089.1\|848054_849287_+	multidrug efflux MFS transporter MdfA	NA	NA	NA	NA
WP_000605482.1\|849327_849612_-	hypothetical protein	NA	NA	NA	NA
WP_012578860.1\|849697_850513_-	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase	NA	NA	NA	NA
WP_000217870.1\|850512_851721_-	MFS transporter	NA	NA	NA	NA
WP_001295903.1\|851804_852341_+	DNA-binding transcriptional regulator RcdA	NA	NA	NA	NA
852346:852371	attL	NA	NA	NA	NA
WP_000290941.1\|852445_853498_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.1e-105	56.4
WP_000649630.1\|853584_855102_-	NTPase	R9TRQ8	Vibrio_phage	4.8e-44	34.4
WP_000107166.1\|855127_856051_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.1e-34	39.8
WP_000051080.1\|856101_856671_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.7e-37	42.9
WP_000804007.1\|856796_857018_+	hypothetical protein	NA	NA	NA	NA
WP_000460902.1\|857050_857560_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.1e-83	94.7
WP_000956184.1\|857567_857768_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.1e-32	97.0
WP_000963473.1\|857731_858073_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_001244228.1\|858140_858374_+	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
WP_000752613.1\|858373_858601_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_000104133.1\|858597_859455_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.1e-158	96.1
WP_000017609.1\|859451_861866_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	95.1
WP_001154431.1\|862020_862209_+	hypothetical protein	E5G6M0	Salmonella_phage	1.6e-26	96.8
WP_001217575.1\|862219_862453_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001059831.1\|862645_862981_-	hypothetical protein	NA	NA	NA	NA
WP_001324531.1\|864074_865049_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_000520398.1\|865073_866099_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.0e-171	88.5
WP_001098422.1\|866098_867865_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000216246.1\|868007_868841_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.4e-122	84.8
WP_000742523.1\|868857_869916_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	8.4e-181	93.1
WP_000059192.1\|869919_870570_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.5e-111	95.8
WP_000673512.1\|870665_871130_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.0e-75	88.3
WP_000868175.1\|871129_871333_+\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000171568.1\|871336_871552_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001069909.1\|871532_872045_+	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000727846.1\|872046_872424_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	5.1e-16	40.0
WP_001080937.1\|872420_872849_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.1e-46	76.6
WP_001039945.1\|872944_873376_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	4.4e-72	94.4
WP_000104819.1\|873730_874792_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.0e-150	79.0
WP_001086818.1\|874788_875394_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.4e-110	92.0
WP_000268309.1\|875386_876295_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.0e-143	90.7
WP_000177580.1\|876281_876641_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	3.2e-52	87.4
WP_000993763.1\|876637_877216_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	4.2e-94	87.0
WP_000575294.1\|877307_878453_+	hypothetical protein	NA	NA	NA	NA
WP_000905023.1\|878570_879137_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.4e-86	86.3
WP_000249532.1\|879279_880452_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	6.6e-203	89.5
WP_001207667.1\|880461_880977_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
WP_001281009.1\|881031_881334_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_000763311.1\|881348_881468_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282790.1\|881460_884538_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	62.5
WP_000980387.1\|884534_885020_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.7e-67	80.6
WP_001011806.1\|885016_886117_+	phage late control D family protein	E5G6Q3	Salmonella_phage	1.0e-176	86.1
WP_000972391.1\|886204_886423_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001024876.1\|886658_888344_-	aspartate:alanine antiporter	NA	NA	NA	NA
886489:886514	attR	NA	NA	NA	NA
WP_000681104.1\|888613_888991_+	inner membrane protein YbjM	NA	NA	NA	NA
WP_001195231.1\|889020_889278_-	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	7.8e-24	63.1
WP_001201578.1\|889437_889725_+	DUF1418 family protein	NA	NA	NA	NA
WP_000189166.1\|889708_890431_+	nitroreductase NfsA	NA	NA	NA	NA
WP_000684321.1\|890491_891394_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000203025.1\|891481_891958_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_000126095.1\|892307_893420_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000996007.1\|893514_894648_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.4e-29	34.0
WP_000105422.1\|894657_895611_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_001061665.1\|895607_896453_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000389260.1\|896512_897001_+	YbjO family protein	NA	NA	NA	NA
WP_001149710.1\|897041_898169_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	4.6e-28	27.6
WP_001295905.1\|898197_898929_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000464491.1\|899154_899823_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001001691.1\|899822_900539_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000756575.1\|900545_901277_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000027205.1\|901294_902023_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_001295906.1\|902240_902756_-	lipoprotein	NA	NA	NA	NA
WP_001160737.1\|902881_903205_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001255161.1\|903201_904032_+	N-acetylmuramoyl-L-alanine amidase AmiD	A0A1B0UZW5	Roseobacter_phage	7.4e-07	29.4
WP_001305933.1\|904028_905042_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001136526.1\|905140_906571_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000566381.1\|906581_907583_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_000815374.1\|907619_909338_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	6.8e-31	24.0
WP_000178693.1\|909470_910439_-	NADH oxidoreductase	NA	NA	NA	NA
WP_000458817.1\|910450_912103_-	hydroxylamine reductase	NA	NA	NA	NA
WP_000491136.1\|912246_913146_-	L-lysine exporter LysO	NA	NA	NA	NA
WP_000488716.1\|913629_914325_-	aquaporin Z	NA	NA	NA	NA
WP_000599803.1\|914750_916409_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_001351020.1\|916405_917362_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000746481.1\|917512_918628_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_000188123.1\|918624_920571_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	8.5e-38	40.1
WP_000410785.1\|920643_920868_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_000520792.1\|921190_921511_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934041.1\|921541_923818_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_001040187.1\|924620_924839_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_001241681.1\|925123_925828_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA

DBSCAN-SWA_3

1038705 : 1148661

106

Enterobacteria_phage(50.0%)

lysis,protease,integrase,tail,transposase,terminase,portal,holin

attL 1085463:1085486|attR 1139595:1139618

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000066490.1\|1038705_1038918_+	cold shock protein CspG	A0A1W6JNX5	Morganella_phage	7.8e-22	71.4
WP_071524879.1\|1038928_1039117_+	cold-shock protein	NA	NA	NA	NA
WP_001316982.1\|1039091_1039322_+	protein YmcE	NA	NA	NA	NA
WP_001019197.1\|1039311_1039485_+	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_000818463.1\|1039533_1040607_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_001054742.1\|1040689_1043422_-	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	3.7e-39	33.3
WP_000533666.1\|1043516_1044590_-\|integrase	tyrosine-type recombinase/integrase	Q9G075	Enterobacteria_phage	1.5e-198	98.9
WP_001303849.1\|1044567_1044786_-	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000545733.1\|1044825_1044993_-	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	100.0
WP_000026224.1\|1045081_1045363_-	hypothetical protein	A0A0K2FIU9	Enterobacteria_phage	2.8e-51	100.0
WP_012578863.1\|1045565_1046234_-	ead/Ea22-like family protein	A0A088CC42	Shigella_phage	2.7e-68	79.7
WP_000827661.1\|1046230_1046794_-	hypothetical protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	6.0e-45	60.8
WP_001214459.1\|1046790_1046955_-	DUF2737 family protein	A0A2I6PID4	Escherichia_phage	1.6e-22	98.1
WP_001111334.1\|1046965_1047259_-	DUF2856 family protein	K7P7E6	Enterobacteria_phage	1.2e-49	97.9
WP_000168274.1\|1047272_1047779_-	single-stranded DNA-binding protein	K7PHK1	Enterobacteria_phage	2.3e-80	100.0
WP_000365290.1\|1047779_1048487_-	recombinase	Q716E7	Shigella_phage	1.3e-137	99.6
WP_001243355.1\|1048741_1048894_-	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000972063.1\|1048878_1049013_-	hypothetical protein	K7PHK2	Enterobacteria_phage	3.1e-16	100.0
WP_000065364.1\|1049088_1049457_-	DUF2528 family protein	K7PGR6	Enterobacteria_phage	2.6e-65	99.2
WP_000167595.1\|1049607_1050078_-	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	3.7e-88	100.0
WP_000088206.1\|1050136_1050409_-	hypothetical protein	A0A0N7C217	Escherichia_phage	1.7e-40	98.9
WP_000032717.1\|1050847_1051690_-	hypothetical protein	F5A3D6	Riemerella_phage	1.2e-52	42.5
WP_096246228.1\|1051770_1052466_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	4.3e-133	99.1
WP_000067727.1\|1052540_1052756_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_000438530.1\|1052897_1053194_+	hypothetical protein	G9L678	Escherichia_phage	2.2e-46	95.9
WP_000185505.1\|1053226_1054126_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	3.8e-174	100.0
WP_000788881.1\|1054122_1054824_+	Replication protein 14	K7P6G2	Enterobacteria_phage	3.8e-129	99.1
WP_000145926.1\|1054820_1055111_+	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
WP_000796283.1\|1055183_1055510_+	hypothetical protein	I6RSP8	Salmonella_phage	9.5e-59	99.1
WP_000810177.1\|1055532_1055979_+	recombination protein NinB	A0A1I9LJP8	Stx_converting_phage	2.9e-74	91.2
WP_000153283.1\|1055975_1056503_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	2.3e-99	98.9
WP_001254226.1\|1056499_1056682_+	NinE family protein	A0A1U9AJF6	Stx1_converting_phage	4.3e-29	98.3
WP_000566998.1\|1056678_1056849_+	protein ninF	A0A2I6PIG4	Escherichia_phage	7.2e-26	100.0
WP_001003979.1\|1056841_1057564_+	phage antirepressor KilAC domain-containing protein	K7P7L0	Enterobacteria_phage	4.2e-123	95.0
WP_000002243.1\|1057563_1057854_+	DUF1364 domain-containing protein	K7PKV0	Enterobacteria_phage	3.4e-52	100.0
WP_001008186.1\|1057850_1058213_+	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	6.0e-62	99.2
WP_001235460.1\|1058355_1058979_+	antitermination protein	K7PM87	Enterobacteria_phage	9.8e-113	98.6
WP_001302581.1\|1059231_1059975_+	hypothetical protein	NA	NA	NA	NA
WP_000499456.1\|1060060_1060219_+	DUF3927 family protein	NA	NA	NA	NA
WP_012578864.1\|1060299_1060698_-	hypothetical protein	H6WZJ8	Escherichia_phage	6.9e-11	83.3
WP_000284524.1\|1060840_1061056_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_000075164.1\|1061055_1061553_+	lysozyme	H6WZK1	Escherichia_phage	3.8e-91	98.8
WP_000092249.1\|1061549_1062017_+\|lysis	lysis protein	H6WZK2	Escherichia_phage	4.6e-75	97.4
WP_001059339.1\|1062215_1062740_+	Rha family transcriptional regulator	G8C7W4	Escherichia_phage	4.5e-87	94.2
WP_000373425.1\|1063347_1063842_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_000934130.1\|1063841_1065944_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	97.3
WP_001072975.1\|1065940_1066153_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_011478361.1\|1066080_1067661_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	4.3e-290	100.0
WP_086214752.1\|1067605_1069633_+\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.8
WP_001097046.1\|1069719_1070043_+	DUF2190 family protein	A5LH31	Enterobacteria_phage	8.5e-52	100.0
WP_001283145.1\|1070035_1070311_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	1.6e-43	96.7
WP_000677106.1\|1070322_1070901_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	4.2e-102	100.0
WP_001079423.1\|1070897_1071299_+\|tail	tail protein	A5LH34	Enterobacteria_phage	8.3e-73	100.0
WP_000211121.1\|1071309_1072053_+\|tail	phage tail protein	A5LH35	Enterobacteria_phage	1.6e-133	100.0
WP_001372042.1\|1072113_1072500_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	4.3e-66	100.0
WP_001161009.1\|1072508_1072838_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_000447253.1\|1075864_1076194_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_001152385.1\|1076203_1076902_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.0e-135	100.0
WP_012578866.1\|1076906_1077650_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.9e-149	97.6
WP_012578867.1\|1077547_1078195_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.6e-113	98.1
WP_109840064.1\|1078255_1080223_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	99.7
WP_001233161.1\|1082039_1082639_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	6.7e-111	99.5
WP_012578868.1\|1082703_1084017_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZCC1	Stx2-converting_phage	6.3e-77	96.8
WP_001024006.1\|1084018_1084288_+\|tail	phage tail fiber C-terminal domain-containing protein	A0A1I9LJT0	Stx_converting_phage	2.2e-45	100.0
WP_012578869.1\|1084402_1084981_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	3.6e-53	58.5
WP_000950813.1\|1085342_1086323_+	type III secretion system effector arginine glycosyltransferase NleB2	Q8HAB2	Salmonella_phage	2.9e-87	49.5
1085463:1085486	attL	NA	NA	NA	NA
WP_001592261.1\|1086356_1087376_+\|protease	type III secretion system effector zinc metalloprotease NleC	NA	NA	NA	NA
WP_001247931.1\|1087844_1088543_+\|protease	T3SS effector zinc metalloprotease NleD	NA	NA	NA	NA
WP_001265017.1\|1089017_1090046_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA
WP_001120112.1\|1090018_1090711_-	two-component system response regulator TorR	W8CYM9	Bacillus_phage	4.5e-18	28.0
WP_001230247.1\|1090840_1092013_+	pentaheme c-type cytochrome TorC	NA	NA	NA	NA
WP_001063129.1\|1092012_1094559_+	trimethylamine-N-oxide reductase TorA	A0A077SK27	Escherichia_phage	1.3e-70	30.7
WP_000209902.1\|1094555_1095155_+	molecular chaperone TorD	NA	NA	NA	NA
WP_000024568.1\|1095510_1095816_-	chaperone modulator CbpM	NA	NA	NA	NA
WP_000420625.1\|1095815_1096736_-	curved DNA-binding protein	A0A1V0SIM1	Klosneuvirus	4.2e-11	43.0
WP_001044299.1\|1097270_1098512_+	bifunctional glucose-1-phosphatase/inositol phosphatase	NA	NA	NA	NA
WP_000244367.1\|1098700_1100074_+\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_001143120.1\|1100108_1100336_-	hypothetical protein	NA	NA	NA	NA
WP_001151437.1\|1100356_1100953_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_001273658.1\|1101325_1101499_+	general stress protein	Q9KX95	Enterobacteria_phage	4.9e-06	96.3
WP_001298362.1\|1101581_1102910_-	pyrimidine utilization transport protein G	Q9KX94	Enterobacteria_phage	1.4e-233	98.9
WP_001028090.1\|1102930_1103425_-	pyrimidine utilization flavin reductase protein F	Q9KX93	Enterobacteria_phage	2.5e-50	95.8
WP_001001173.1\|1103435_1104026_-	malonic semialdehyde reductase	NA	NA	NA	NA
WP_001340068.1\|1104035_1104836_-	pyrimidine utilization protein D	NA	NA	NA	NA
WP_001126780.1\|1104843_1105230_-	pyrimidine utilization protein C	NA	NA	NA	NA
WP_001340067.1\|1105241_1105934_-	peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB	NA	NA	NA	NA
WP_001340066.1\|1105933_1107025_-	pyrimidine utilization protein A	NA	NA	NA	NA
WP_000191701.1\|1107312_1107951_+	HTH-type transcriptional regulator RutR	NA	NA	NA	NA
WP_012578870.1\|1107990_1111953_-	trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000979523.1\|1112007_1112217_+	hypothetical protein	NA	NA	NA	NA
WP_001018494.1\|1112375_1113884_+	sodium/proline symporter PutP	NA	NA	NA	NA
WP_000497957.1\|1114103_1114934_+	FTR1 family protein	NA	NA	NA	NA
WP_000154378.1\|1114991_1116119_+	iron uptake system protein EfeO	NA	NA	NA	NA
WP_001199145.1\|1116124_1117396_+	deferrochelatase/peroxidase EfeB	NA	NA	NA	NA
WP_000533536.1\|1118022_1118811_+	phosphate starvation-inducible protein PhoH	R4II13	Cronobacter_phage	2.7e-91	76.7
WP_000009232.1\|1119373_1120060_+	DUF2726 domain-containing protein	NA	NA	NA	NA
WP_000279877.1\|1120325_1121543_+\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	1.1e-43	34.8
WP_012578871.1\|1121712_1123242_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000070929.1\|1123213_1123501_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001258871.1\|1123601_1125437_+	hypothetical protein	NA	NA	NA	NA
WP_000282108.1\|1126811_1127375_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_001260398.1\|1128542_1128782_+	hypothetical protein	NA	NA	NA	NA
WP_000609738.1\|1138202_1138709_-	NleE/OspZ family T3SS effector cysteine methyltransferase	NA	NA	NA	NA
WP_000022709.1\|1142233_1142455_+	hypothetical protein	NA	NA	NA	NA
1139595:1139618	attR	NA	NA	NA	NA
WP_170315999.1\|1144891_1146104_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	3.3e-165	97.3
WP_000255946.1\|1147638_1148661_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4

DBSCAN-SWA_4

1386687 : 1473293

Stx2-converting_phage(26.79%)

protease,integrase,tail,capsid,transposase,terminase,portal,head,holin

attL 1386524:1386549|attR 1439765:1439790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1386524:1386549	attL	NA	NA	NA	NA
WP_000113687.1\|1386687_1387818_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	5.7e-103	51.4
WP_000113189.1\|1387795_1388044_-	excisionase	NA	NA	NA	NA
WP_000048378.1\|1388108_1390580_-	exonuclease	A0A192Y6E0	Salmonella_phage	1.1e-58	58.2
WP_001090200.1\|1390672_1390864_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|1390860_1391049_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_000358771.1\|1391607_1391886_+	hypothetical protein	NA	NA	NA	NA
WP_001339605.1\|1391845_1392247_-	hypothetical protein	I6PDF6	Cronobacter_phage	1.0e-09	81.6
WP_000367380.1\|1392258_1392411_-	DUF1391 family protein	M4QQ57	Salicola_phage	4.3e-06	51.1
WP_000362153.1\|1392676_1393096_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
WP_000391950.1\|1393196_1393478_+	helix-turn-helix domain-containing protein	K7PHA1	Enterobacteria_phage	6.5e-24	72.6
WP_000693943.1\|1393461_1393887_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095665.1\|1393909_1394872_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.0e-68	50.9
WP_001151205.1\|1394912_1395335_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.9e-65	91.4
WP_001002673.1\|1395578_1395890_+	hypothetical protein	A0A0U2QV73	Escherichia_phage	3.1e-59	96.1
WP_001339608.1\|1396151_1396544_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	3.7e-33	58.3
WP_001380433.1\|1396540_1397134_-	hypothetical protein	NA	NA	NA	NA
WP_000748514.1\|1397174_1397603_-	hypothetical protein	NA	NA	NA	NA
WP_000893384.1\|1397599_1398691_-	hypothetical protein	NA	NA	NA	NA
WP_000967405.1\|1398980_1399193_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.8e-26	92.9
WP_001410105.1\|1399359_1399638_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.6e-11	46.9
WP_001265094.1\|1399639_1400689_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	5.9e-110	54.9
WP_000904174.1\|1400701_1401061_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.9e-37	64.9
WP_001064912.1\|1401057_1401747_+	antiterminator	I6PDF8	Cronobacter_phage	2.1e-60	51.1
WP_000244363.1\|1402323_1403697_-\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_000874861.1\|1404231_1406085_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	0.0e+00	94.2
WP_000372595.1\|1406235_1406451_+\|holin	class II holin family protein	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
WP_000193280.1\|1406455_1406806_+	YdfR family protein	K7PGU6	Enterobacteria_phage	2.9e-37	95.2
WP_000992071.1\|1406869_1407403_+	lysozyme	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
WP_032140280.1\|1407957_1408044_+	hypothetical protein	NA	NA	NA	NA
WP_012578895.1\|1408265_1408451_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	2.7e-18	98.4
WP_000736383.1\|1408536_1408761_+	hypothetical protein	NA	NA	NA	NA
WP_000095741.1\|1408959_1409160_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
WP_000829185.1\|1409201_1409567_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
WP_000958372.1\|1409857_1410421_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	3.3e-83	92.5
WP_001339613.1\|1410417_1412079_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	99.1
WP_000173031.1\|1412142_1414080_+\|capsid	phage major capsid protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
WP_001063099.1\|1414124_1414346_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_012578896.1\|1414291_1416877_+\|portal	phage portal protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	99.7
WP_000125990.1\|1416873_1417200_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001007915.1\|1417209_1417560_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	3.0e-58	99.1
WP_000573362.1\|1417556_1418003_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	99.3
WP_000133388.1\|1417999_1418344_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275441.1\|1418408_1419125_+	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
WP_000710949.1\|1419139_1419514_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
WP_001513217.1\|1419609_1419819_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
WP_000212986.1\|1419866_1423109_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	93.1
WP_000807924.1\|1423101_1423443_+\|tail	phage tail protein	A0A0P0ZCS8	Stx2-converting_phage	2.4e-60	96.5
WP_001420466.1\|1423442_1424141_+\|tail	phage minor tail protein L	B6DZB1	Enterobacteria_phage	9.9e-130	96.6
WP_000194793.1\|1424146_1424890_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	5.0e-148	97.6
WP_122999376.1\|1424835_1425468_+\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	3.9e-101	97.1
WP_000514675.1\|1425708_1429182_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.9
WP_001233154.1\|1429249_1429849_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	4.5e-107	94.5
WP_000216481.1\|1430000_1431278_+\|tail	prophage tail fiber N-terminal domain-containing protein	B6DZB7	Enterobacteria_phage	2.4e-73	88.9
WP_001023459.1\|1431279_1431549_+\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	4.6e-43	96.6
WP_000767050.1\|1431769_1432312_+	hypothetical protein	Q9LA55	Enterobacteria_phage	8.4e-52	68.6
WP_106409363.1\|1432256_1432451_+\|tail	phage tail fiber C-terminal domain-containing protein	A0A2R2Z347	Escherichia_phage	1.1e-09	87.2
WP_001025663.1\|1432793_1434116_-	type III secretion system effector NleA	H6WZN2	Escherichia_phage	2.1e-221	83.9
WP_106409364.1\|1435707_1435830_+\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	3.8e-05	91.3
WP_000950979.1\|1435936_1436848_+	type III secretion system effector kinase NleH1-2	A5LH48	Enterobacteria_phage	3.0e-134	82.2
WP_000938103.1\|1436913_1437483_+	T3SS effector caspase inhibitor NleF	NA	NA	NA	NA
WP_000350514.1\|1439775_1439898_+	membrane protein	NA	NA	NA	NA
1439765:1439790	attR	NA	NA	NA	NA
WP_000526113.1\|1440019_1440478_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	32.3
WP_000244358.1\|1440769_1442143_+\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_000443085.1\|1442218_1443025_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209513.1\|1443024_1444218_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001195274.1\|1444229_1445588_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2
WP_000763545.1\|1445591_1447187_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.1e-51	38.2
WP_001194637.1\|1447186_1448743_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|1448834_1448879_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285667.1\|1449016_1449898_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|1449894_1450515_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001339671.1\|1450542_1452432_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291206.1\|1452644_1453520_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278899.1\|1453559_1454150_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559273.1\|1454146_1454905_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	4.4e-06	23.4
WP_000422059.1\|1455124_1456174_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5
WP_001031530.1\|1456209_1456461_-	YciN family protein	NA	NA	NA	NA
WP_001295576.1\|1456840_1459438_+	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	7.0e-88	34.5
WP_000776253.1\|1459647_1460622_+	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_000908596.1\|1460916_1461081_+	YmiA family putative membrane protein	NA	NA	NA	NA
WP_001308616.1\|1461083_1461251_+	hypothetical protein	NA	NA	NA	NA
WP_001310756.1\|1461364_1461460_+	hypothetical protein	NA	NA	NA	NA
WP_000099527.1\|1461622_1464298_+	aconitate hydratase AcnA	NA	NA	NA	NA
WP_001176295.1\|1464361_1464952_-	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	7.7e-43	48.9
WP_001256548.1\|1465121_1465886_+	phosphatidylglycerophosphatase B	NA	NA	NA	NA
WP_000876274.1\|1466034_1466343_+	lipopolysaccharide assembly protein LapA	NA	NA	NA	NA
WP_000891353.1\|1466349_1467519_+	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_001339668.1\|1467710_1468448_+	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_001339667.1\|1468447_1468774_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_000480199.1\|1468899_1469118_-	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA
WP_001088619.1\|1469386_1470136_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_001288368.1\|1470225_1470399_-	hypothetical protein	NA	NA	NA	NA
WP_024201056.1\|1470546_1472532_-	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_000221852.1\|1472585_1472690_+	hypothetical protein	NA	NA	NA	NA
WP_000526113.1\|1472834_1473293_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	32.3

DBSCAN-SWA_5

1823447 : 1869667

Enterobacteria_phage(72.34%)

integrase,tail,capsid,plate,terminase,tRNA,portal,head,holin

attL 1825849:1825873|attR 1862308:1862332

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000029464.1\|1823447_1824197_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	28.2
WP_001154183.1\|1824196_1824748_-	bifunctional thioredoxin/glutathione peroxidase	NA	NA	NA	NA
WP_000956501.1\|1824809_1825790_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA
1825849:1825873	attL	NA	NA	NA	NA
WP_000416304.1\|1825979_1826375_-	hypothetical protein	NA	NA	NA	NA
WP_001247208.1\|1826385_1827321_-\|integrase	tyrosine-type recombinase/integrase	A0A0M4RTQ0	Salmonella_phage	5.6e-80	50.8
WP_000904672.1\|1827409_1827718_-	helix-turn-helix domain-containing protein	A0A0M5M1I9	Salmonella_phage	1.3e-22	53.1
WP_001151410.1\|1827814_1828093_+	hypothetical protein	NA	NA	NA	NA
WP_000917809.1\|1828107_1828446_+	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	2.3e-52	87.1
WP_000158964.1\|1828456_1828744_+	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.0e-32	75.8
WP_000514277.1\|1828755_1828998_+	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_000021668.1\|1828994_1829108_+	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.2e-08	91.9
WP_000985159.1\|1829194_1829398_+	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	1.0e-26	88.1
WP_000153684.1\|1829394_1829640_+	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.4e-37	91.4
WP_000599411.1\|1829781_1830147_+	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	3.9e-61	97.5
WP_000123423.1\|1830153_1832976_+	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	96.4
WP_000686479.1\|1833052_1834012_+	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	1.1e-179	99.4
WP_000211288.1\|1834016_1834328_+	plasmid partitioning/stability family protein	A0A0A7NPT5	Enterobacteria_phage	7.2e-48	94.2
WP_000248600.1\|1834706_1835789_+	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	8.4e-19	29.5
WP_000970615.1\|1835785_1837990_+	S8 family peptidase	NA	NA	NA	NA
WP_000087812.1\|1838494_1839541_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_000613749.1\|1839540_1841292_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.9
WP_001262654.1\|1841446_1842283_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	7.9e-150	99.3
WP_001055100.1\|1842306_1843359_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	2.9e-194	97.4
WP_000632335.1\|1843404_1844205_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	2.3e-130	91.7
WP_000063103.1\|1844306_1844801_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	1.2e-89	99.4
WP_000864901.1\|1844800_1845001_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
WP_000104350.1\|1845003_1845327_+\|holin	phage holin family protein	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000072327.1\|1845323_1845716_+	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	5.8e-71	100.0
WP_001437610.1\|1845712_1846120_+	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	4.5e-66	98.5
WP_000920596.1\|1846257_1846725_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	7.6e-86	99.4
WP_000356305.1\|1846717_1847353_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	2.6e-113	99.1
WP_012578915.1\|1847364_1847931_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	1.2e-98	97.3
WP_001067548.1\|1847948_1848278_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	2.2e-55	100.0
WP_001111951.1\|1848281_1849178_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	9.7e-154	97.3
WP_000071724.1\|1849170_1849779_+\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.5e-86	74.9
WP_000217022.1\|1849775_1851341_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.4e-139	56.7
WP_012578916.1\|1851351_1851828_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.2e-46	57.6
WP_001057723.1\|1851834_1852446_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	2.5e-84	80.0
WP_012578917.1\|1852445_1852904_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	3.4e-38	52.5
WP_001165545.1\|1852975_1853575_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	2.6e-86	81.7
WP_000979945.1\|1853601_1854090_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
WP_000853385.1\|1854102_1856910_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	97.9
WP_000333505.1\|1856896_1857052_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.8e-21	94.1
WP_000789085.1\|1857060_1857435_-\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	7.6e-36	71.5
WP_000290450.1\|1857490_1858003_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	3.2e-93	100.0
WP_000005409.1\|1858002_1859187_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	3.6e-225	99.0
WP_000132806.1\|1859344_1860445_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	1.1e-204	99.2
WP_024188892.1\|1860801_1861305_+	hypothetical protein	NA	NA	NA	NA
WP_000488101.1\|1861454_1861715_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000078916.1\|1861905_1862046_+	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_001229265.1\|1862349_1862649_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
1862308:1862332	attR	NA	NA	NA	NA
WP_000672423.1\|1862653_1865041_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_000018588.1\|1865055_1866039_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.1e-33	38.5
WP_001386830.1\|1866322_1866367_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_000124850.1\|1866489_1866846_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_012578919.1\|1866898_1867096_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001700733.1\|1867192_1867735_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.9
WP_001144202.1\|1867738_1869667_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	9.4e-130	37.3

DBSCAN-SWA_6

2177611 : 2192586

Bacillus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000043439.1\|2177611_2179018_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	1.4e-37	28.3
WP_000271561.1\|2179138_2180035_-	alpha-1,2-fucosyltransferase	A0A2H4UUT1	Bodo_saltans_virus	1.5e-29	32.3
WP_000626462.1\|2180045_2180783_-	glycosyltransferase	F2Y1U7	Organic_Lake_phycodnavirus	1.5e-11	28.2
WP_000983273.1\|2180783_2181950_-	O90/O127 family O-antigen polymerase	NA	NA	NA	NA
WP_012578939.1\|2181957_2182611_-	CatB-related O-acetyltransferase	A0A1V0SJ47	Klosneuvirus	4.2e-13	39.0
WP_001403120.1\|2182607_2183879_-	O90/O127 family O-antigen flippase	NA	NA	NA	NA
WP_000736844.1\|2183891_2185265_-	colanic acid biosynthesis phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	1.1e-31	28.4
WP_001286272.1\|2185268_2186717_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	3.2e-58	32.1
WP_012578940.1\|2186709_2187210_-	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA
WP_000089908.1\|2187212_2188178_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	2.2e-87	50.8
WP_001140914.1\|2188180_2189302_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	5.3e-133	65.5
WP_000799972.1\|2189328_2190345_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_000234389.1\|2190363_2191383_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.2e-84	48.0
WP_000183075.1\|2191692_2192586_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0

DBSCAN-SWA_7

2297992 : 2307437

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292780.1\|2297992_2299129_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.7e-163	97.7
WP_012578945.1\|2299125_2301129_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.2
WP_001340078.1\|2301253_2301715_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.6e-75	98.7
WP_001302807.1\|2301755_2302226_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.3e-81	99.4
WP_000598641.1\|2302272_2302992_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001340080.1\|2302988_2304674_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	4.3e-304	99.5
WP_001240407.1\|2304895_2305627_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
WP_001216963.1\|2305686_2305794_+	protein YohO	NA	NA	NA	NA
WP_000783128.1\|2305774_2306506_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569341.1\|2306510_2307437_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8

DBSCAN-SWA_8

2515657 : 2593364

106

Enterobacteria_phage(33.33%)

protease,integrase,tail,capsid,plate,terminase,tRNA,holin

attL 2510040:2510056|attR 2563274:2563290

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2510040:2510056	attL	NA	NA	NA	NA
WP_001283598.1\|2515657_2516470_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_001289165.1\|2516469_2517483_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000699119.1\|2517548_2518685_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	5.9e-23	29.1
WP_000615815.1\|2518783_2519779_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
WP_000127788.1\|2519775_2520954_-	MFS transporter	NA	NA	NA	NA
WP_000817178.1\|2521218_2522439_-	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
WP_000683533.1\|2522597_2524604_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_000559764.1\|2524724_2525003_-	YfcL family protein	NA	NA	NA	NA
WP_001089235.1\|2525036_2525585_-	elongation factor P hydroxylase	NA	NA	NA	NA
WP_000447360.1\|2525584_2526394_-	TSUP family transporter	NA	NA	NA	NA
WP_001043802.1\|2526393_2527218_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
WP_000918470.1\|2527221_2528307_-	chorismate synthase	A0A291AU41	Pandoravirus	9.1e-90	48.4
WP_012578955.1\|2528341_2529274_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000730806.1\|2529439_2529991_+	endonuclease SmrB	NA	NA	NA	NA
WP_001408062.1\|2530060_2530924_-	DUF2544 domain-containing protein	NA	NA	NA	NA
WP_001037538.1\|2530925_2531471_-	fimbrial protein	NA	NA	NA	NA
WP_000826833.1\|2531467_2531947_-	fimbrial protein	NA	NA	NA	NA
WP_000826023.1\|2531943_2532435_-	fimbrial protein	NA	NA	NA	NA
WP_000170520.1\|2532450_2533200_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_001114065.1\|2533219_2535859_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000033310.1\|2535942_2536509_-	fimbrial protein	NA	NA	NA	NA
WP_001195816.1\|2537171_2537657_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
WP_000425006.1\|2537859_2540004_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_000531916.1\|2540003_2541314_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_001296261.1\|2541539_2541824_-	YfcZ/YiiS family protein	NA	NA	NA	NA
WP_001339815.1\|2542195_2543536_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
WP_000776774.1\|2543597_2544353_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_000368123.1\|2544646_2545579_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.6e-167	99.7
WP_000958685.1\|2545890_2547048_+\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	3.7e-222	99.7
WP_096959196.1\|2547278_2547494_-	Hin recombinase	K7PJT4	Enterobacteria_phage	2.0e-17	66.7
WP_024201066.1\|2547469_2547826_-\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	2.2e-40	68.6
WP_001096966.1\|2547834_2548863_-\|tail	tail fiber protein	A0A0M3ULD8	Salmonella_phage	3.5e-30	46.3
WP_000049950.1\|2548862_2549543_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	2.6e-103	78.8
WP_001197072.1\|2549539_2550739_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	2.9e-185	83.6
WP_001270636.1\|2550738_2551092_-	hypothetical protein	A0A0M4R339	Salmonella_phage	2.0e-54	88.9
WP_000301071.1\|2551091_2551844_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.5e-88	65.9
WP_001123212.1\|2551908_2552304_-	hypothetical protein	NA	NA	NA	NA
WP_000113597.1\|2552290_2553061_-	hypothetical protein	NA	NA	NA	NA
WP_077826329.1\|2553181_2553490_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	2.5e-37	98.7
WP_000081741.1\|2553525_2554587_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	4.1e-159	83.4
WP_000155121.1\|2554589_2554892_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	9.1e-48	90.0
WP_001349561.1\|2554891_2555479_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.1e-84	89.1
WP_000990882.1\|2555478_2557467_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.6e-270	74.2
WP_000393944.1\|2557644_2558097_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	2.2e-58	76.0
WP_000257260.1\|2558100_2558541_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.0e-56	74.7
WP_000046921.1\|2558552_2559698_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	7.5e-159	73.2
WP_032211368.1\|2559701_2560265_-	hypothetical protein	A0A0M4R331	Salmonella_phage	2.6e-80	76.3
WP_001142483.1\|2560239_2560629_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	1.1e-66	95.3
WP_000008742.1\|2560615_2561170_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.7e-82	85.9
WP_001125668.1\|2561166_2561574_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.4e-69	94.8
WP_162010769.1\|2561572_2561806_+	hypothetical protein	NA	NA	NA	NA
WP_000627485.1\|2561802_2562744_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	1.7e-156	87.2
WP_001066736.1\|2562755_2563262_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.2e-69	78.7
WP_000873163.1\|2563265_2564486_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-203	89.8
2563274:2563290	attR	NA	NA	NA	NA
WP_000246484.1\|2564500_2565238_-\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	6.0e-109	96.0
WP_000113480.1\|2565146_2566592_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.7e-264	94.6
WP_001130793.1\|2566591_2568214_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.6
WP_001218996.1\|2568216_2568768_-\|terminase	terminase small subunit	G0ZND3	Cronobacter_phage	1.9e-67	70.3
WP_001472362.1\|2568721_2569336_+	hypothetical protein	NA	NA	NA	NA
WP_000113285.1\|2569468_2569654_-	hypothetical protein	NA	NA	NA	NA
WP_001311799.1\|2569797_2570190_-	DUF2570 domain-containing protein	Q8SBD9	Shigella_phage	2.5e-50	82.9
WP_000229385.1\|2570173_2570650_-	glycoside hydrolase family protein	K7P7Y6	Enterobacteria_phage	7.3e-84	94.3
WP_000783734.1\|2570633_2570957_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_000658764.1\|2571409_2571922_-	HNH endonuclease	K7PL52	Enterobacteria_phage	1.4e-96	99.4
WP_000027553.1\|2572116_2572635_-	DUF1133 family protein	Q716B8	Shigella_phage	2.9e-94	98.3
WP_000994516.1\|2572631_2572820_-	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_001008199.1\|2572816_2573179_-	RusA family crossover junction endodeoxyribonuclease	A5VW85	Enterobacteria_phage	9.2e-63	100.0
WP_000002231.1\|2573175_2573466_-	DUF1364 domain-containing protein	K7PK25	Enterobacteria_phage	9.3e-50	96.9
WP_001279421.1\|2573465_2573735_-	hypothetical protein	K7PHK7	Enterobacteria_phage	7.1e-44	100.0
WP_000950970.1\|2573727_2573904_-	protein ninF	A0A220NRM2	Escherichia_phage	7.4e-26	98.3
WP_000386655.1\|2573903_2574263_-	DUF2591 family protein	G8EYI2	Enterobacteria_phage	1.0e-61	95.0
WP_001254259.1\|2574265_2574442_-	NinE family protein	A5VW90	Enterobacteria_phage	3.0e-27	98.3
WP_012578958.1\|2574438_2574966_-	phage N-6-adenine-methyltransferase	H6WZI7	Escherichia_phage	2.1e-100	99.4
WP_000736903.1\|2574962_2575403_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_001248389.1\|2575476_2576853_-	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	1.6e-253	99.6
WP_000431319.1\|2576849_2577737_-	replication protein	A5VW95	Enterobacteria_phage	3.1e-144	99.0
WP_001244622.1\|2577799_2578072_-	hypothetical protein	G9L679	Escherichia_phage	1.4e-42	98.9
WP_012578960.1\|2578094_2578391_-	hypothetical protein	A0A2D1GLZ9	Escherichia_phage	1.2e-47	99.0
WP_000437875.1\|2578529_2578730_-	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
WP_001274760.1\|2578830_2579544_+	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	1.8e-131	100.0
WP_000588958.1\|2579551_2579989_+	hypothetical protein	C6ZR46	Salmonella_phage	1.0e-55	73.8
WP_000050903.1\|2579975_2580347_+	hypothetical protein	C6ZR45	Salmonella_phage	3.6e-06	58.3
WP_000198444.1\|2580848_2581232_+	hypothetical protein	G9L671	Escherichia_phage	3.9e-64	100.0
WP_000167602.1\|2581290_2581761_+	hypothetical protein	A0A1I9LJN4	Stx_converting_phage	4.1e-87	98.7
WP_000505906.1\|2581807_2582104_+	hypothetical protein	A0A2D1GLR6	Escherichia_phage	8.1e-49	95.9
WP_000865171.1\|2582103_2582292_+	hypothetical protein	NA	NA	NA	NA
WP_000005784.1\|2582426_2583395_+	hypothetical protein	G5DA88	Enterobacteria_phage	2.2e-55	99.7
WP_000638547.1\|2583418_2583550_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	A5VWA4	Enterobacteria_phage	1.4e-16	100.0
WP_001243355.1\|2583534_2583687_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000365292.1\|2583941_2584649_+	recombinase	Q716E7	Shigella_phage	3.8e-137	99.6
WP_000018648.1\|2584649_2585117_+	HNH endonuclease	A0A2I7QWC6	Vibrio_phage	1.0e-45	61.3
WP_000098523.1\|2585113_2585620_+	single-stranded DNA-binding protein	K7PHK1	Enterobacteria_phage	6.8e-80	98.8
WP_001111303.1\|2585633_2585927_+	DUF2856 family protein	K7P7E6	Enterobacteria_phage	5.0e-51	100.0
WP_001214458.1\|2585937_2586105_+	DUF2737 family protein	Q716F2	Shigella_phage	1.2e-22	96.4
WP_000004315.1\|2586101_2586371_+	hypothetical protein	Q1MVG1	Enterobacteria_phage	1.1e-17	55.2
WP_000034177.1\|2586357_2586996_+	ead/Ea22-like family protein	H6WZG2	Escherichia_phage	1.0e-93	98.3
WP_001014291.1\|2586997_2587189_+	hypothetical protein	K7PKJ7	Enterobacteria_phage	3.3e-27	100.0
WP_012578961.1\|2587191_2587587_+	hypothetical protein	A0A088CE95	Shigella_phage	9.7e-66	96.1
WP_000360279.1\|2587588_2587786_+	hypothetical protein	A0A1I9SEY0	Klebsiella_phage	1.5e-30	84.6
WP_000208133.1\|2587796_2588429_+	DUF551 domain-containing protein	G9L6B4	Escherichia_phage	2.0e-81	90.5
WP_000545737.1\|2588529_2588697_+	hypothetical protein	A5VWB7	Enterobacteria_phage	9.8e-28	100.0
WP_001163428.1\|2588754_2588955_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_032160942.1\|2589250_2589403_+	hypothetical protein	NA	NA	NA	NA
WP_001197004.1\|2589482_2590730_-	MFS transporter	NA	NA	NA	NA
WP_001274892.1\|2590791_2591715_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000194529.1\|2591930_2593364_+	glycoside hydrolase family 32 protein	F8WPR5	Bacillus_phage	9.1e-29	25.0

DBSCAN-SWA_9

2657014 : 2750122

101

Pseudomonas_phage(11.63%)

protease,tail,capsid,transposase,terminase,plate,tRNA,head,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000244367.1\|2657014_2658388_+\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_000517443.1\|2658427_2659219_-	SDR family oxidoreductase UcpA	Q06VL0	Trichoplusia_ni_ascovirus	6.8e-18	31.0
WP_001175631.1\|2659498_2660395_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_001040491.1\|2660398_2661823_+	PTS N-acetylmuramic acid transporter subunit IIBC	NA	NA	NA	NA
WP_001339829.1\|2662002_2662902_-	porphyrinogen peroxidase	S4VVJ7	Pandoravirus	4.5e-26	32.6
WP_000838959.1\|2662997_2663573_-	RpoE-regulated lipoprotein	NA	NA	NA	NA
WP_001296281.1\|2663633_2664083_-	DUF2919 domain-containing protein	NA	NA	NA	NA
WP_000406000.1\|2664069_2664495_-	GNAT family acetyltransferase	NA	NA	NA	NA
WP_000102892.1\|2664708_2665578_+	N-acetylmuramoyl-L-alanine amidase AmiA	E5DV68	Deep-sea_thermophilic_phage	3.2e-13	27.4
WP_001298446.1\|2665581_2666481_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_000858968.1\|2666524_2667196_+	hypothetical protein	NA	NA	NA	NA
WP_001007643.1\|2667192_2670642_-	helicase SNF2	G8DDA1	Micromonas_pusilla_virus	2.9e-36	29.6
WP_000003978.1\|2670740_2672003_+	DUF1963 domain-containing protein	NA	NA	NA	NA
WP_001285745.1\|2672043_2672361_+	hypothetical protein	NA	NA	NA	NA
WP_000753675.1\|2672439_2673492_-	HTH-type transcriptional regulator EutR	NA	NA	NA	NA
WP_001295463.1\|2673537_2674038_-	ethanolamine utilization microcompartment protein EutK	NA	NA	NA	NA
WP_001111043.1\|2674050_2674710_-	ethanolamine utilization microcompartment protein EutL	NA	NA	NA	NA
WP_000197710.1\|2675459_2676107_-	helix-turn-helix domain-containing protein	A0A2I7S9A5	Vibrio_phage	1.2e-07	39.0
WP_000989761.1\|2676289_2676526_+	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	1.8e-14	57.4
WP_000500007.1\|2676525_2678568_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2D1GNK9	Pseudomonas_phage	3.5e-175	49.3
WP_000053170.1\|2678586_2679480_+	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	1.2e-90	56.6
WP_000361028.1\|2679494_2679719_+	hypothetical protein	NA	NA	NA	NA
WP_000206134.1\|2679975_2680620_+	DUF3164 family protein	A4JWM8	Burkholderia_virus	1.7e-75	66.8
WP_000553850.1\|2680621_2680855_+	ANR family transcriptional regulator	NA	NA	NA	NA
WP_012578964.1\|2680835_2681027_+	hypothetical protein	A0A2D1GNV5	Pseudomonas_phage	5.2e-09	54.4
WP_000564495.1\|2681167_2681386_-	hypothetical protein	NA	NA	NA	NA
WP_000653700.1\|2681474_2682185_+	DUF2786 domain-containing protein	NA	NA	NA	NA
WP_000687524.1\|2682411_2682642_+	hypothetical protein	NA	NA	NA	NA
WP_000234091.1\|2682631_2682946_+	DUF4752 family protein	A0A088CD82	Shigella_phage	2.1e-23	62.8
WP_000082800.1\|2682917_2683082_+	hypothetical protein	NA	NA	NA	NA
WP_001292367.1\|2683078_2683348_+	hypothetical protein	Q1MVG1	Enterobacteria_phage	4.1e-15	46.0
WP_001289972.1\|2683334_2683832_+	ead/Ea22-like family protein	A0A076GCN9	Escherichia_phage	3.7e-14	72.2
WP_001261588.1\|2683831_2684002_+	hypothetical protein	A0A0F6TJP6	Escherichia_coli_O157_typing_phage	1.4e-18	91.2
WP_000687850.1\|2684254_2684533_+	hypothetical protein	NA	NA	NA	NA
WP_000914513.1\|2684504_2684903_+	regulatory protein GemA	A0A2D1GNN4	Pseudomonas_phage	2.7e-39	63.6
WP_000976762.1\|2684899_2685376_+	hypothetical protein	NA	NA	NA	NA
WP_001192999.1\|2685476_2685944_+	hypothetical protein	A0A2D1GNW5	Pseudomonas_phage	2.3e-18	39.6
WP_000186337.1\|2685970_2686249_+	hypothetical protein	NA	NA	NA	NA
WP_001372993.1\|2686431_2686824_+\|holin	phage holin family protein	Q9MBZ5	Enterobacteria_phage	1.6e-28	55.7
WP_000445983.1\|2686813_2687110_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	8.1e-17	50.5
WP_000836742.1\|2687093_2687639_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.4e-92	85.6
WP_000198193.1\|2687635_2687818_+	hypothetical protein	NA	NA	NA	NA
WP_000241905.1\|2687892_2688045_+	hypothetical protein	NA	NA	NA	NA
WP_000312577.1\|2688044_2688545_+	DUF1804 family protein	A0A0M3VI86	Ralstonia_phage	9.8e-39	47.2
WP_001171800.1\|2688591_2689332_+	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	2.4e-65	52.4
WP_001129149.1\|2689333_2690974_+\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	6.6e-193	63.1
WP_000068056.1\|2690977_2692573_+	DUF935 domain-containing protein	A0A0U5KSI0	unidentified_phage	3.5e-122	45.7
WP_001143306.1\|2692559_2693726_+\|capsid	minor capsid protein	A0A0M4UTA3	Ralstonia_phage	8.4e-57	46.1
WP_000094313.1\|2693722_2694274_+	phage virion morphogenesis protein	NA	NA	NA	NA
WP_012578967.1\|2694483_2695599_+\|protease	phage protease	A0A0M5N0Q6	Ralstonia_phage	7.3e-50	37.1
WP_000375809.1\|2695599_2695995_+	hypothetical protein	A0A2H4IZH5	uncultured_Caudovirales_phage	1.9e-16	37.8
WP_000960880.1\|2696005_2696914_+\|head	Mu-like prophage major head subunit gpT family protein	A0A2H4J778	uncultured_Caudovirales_phage	7.4e-101	60.3
WP_000416600.1\|2696917_2697250_+	hypothetical protein	NA	NA	NA	NA
WP_000119401.1\|2697253_2697685_+	DUF1320 family protein	A0A1X9SGZ3	Bradyrhizobium_phage	9.1e-09	27.4
WP_071791946.1\|2697681_2698320_+	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	9.9e-28	39.4
WP_000671672.1\|2698333_2698534_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_001290034.1\|2698526_2699948_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0M3LQC3	Mannheimia_phage	3.2e-95	45.7
WP_000053463.1\|2699960_2700335_+	hypothetical protein	F6MIK8	Haemophilus_phage	1.7e-32	61.2
WP_000152396.1\|2700331_2700715_+	hypothetical protein	NA	NA	NA	NA
WP_000178828.1\|2700729_2700888_+	hypothetical protein	NA	NA	NA	NA
WP_000918298.1\|2700877_2703151_+\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	5.6e-81	35.5
WP_000539587.1\|2703150_2704500_+	DNA circularization N-terminal domain-containing protein	F6MIL2	Haemophilus_phage	1.1e-36	26.6
WP_001143147.1\|2704483_2705695_+	hypothetical protein	A0A2H4J9E6	uncultured_Caudovirales_phage	1.3e-68	37.5
WP_000263495.1\|2705694_2706345_+\|plate	phage baseplate assembly protein V	F6MIL4	Haemophilus_phage	6.1e-41	48.2
WP_000372929.1\|2706398_2706749_+	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	8.1e-32	63.8
WP_001116499.1\|2706748_2707828_+\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	1.2e-73	44.4
WP_001098747.1\|2707831_2708404_+	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	2.3e-31	39.8
WP_032211389.1\|2708661_2709153_+	hypothetical protein	K7PH60	Enterobacterial_phage	1.1e-69	81.4
WP_000805554.1\|2709152_2709746_+\|tail	tail fiber assembly protein	K7PMC4	Enterobacterial_phage	1.1e-52	50.3
WP_001032314.1\|2709717_2710134_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	4.1e-22	47.6
WP_001115593.1\|2710136_2710643_-	hypothetical protein	NA	NA	NA	NA
WP_000769961.1\|2711367_2712729_-	ethanolamine ammonia-lyase subunit alpha	NA	NA	NA	NA
WP_000244358.1\|2713987_2715361_-\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_024201071.1\|2715467_2715704_-	ethanolamine ammonia-lyase reactivating factor EutA	NA	NA	NA	NA
WP_000512386.1\|2715700_2716927_-	ethanolamine utilization protein EutH	NA	NA	NA	NA
WP_012578971.1\|2717143_2718331_-	ethanolamine utilization ethanol dehydrogenase EutG	NA	NA	NA	NA
WP_000929720.1\|2718320_2719157_-	ethanolamine utilization protein EutJ	NA	NA	NA	NA
WP_001075698.1\|2719167_2720571_-	aldehyde dehydrogenase EutE	NA	NA	NA	NA
WP_000762196.1\|2720582_2720870_-	ethanolamine utilization microcompartment protein EutN	NA	NA	NA	NA
WP_000387713.1\|2720976_2721270_-	ethanolamine utilization microcompartment protein EutM	NA	NA	NA	NA
WP_000582973.1\|2721308_2722325_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_000651284.1\|2722321_2723125_-	ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT	NA	NA	NA	NA
WP_000733877.1\|2723121_2723823_-	ethanolamine utilization acetate kinase EutQ	NA	NA	NA	NA
WP_000820789.1\|2723797_2724277_-	ethanolamine utilization acetate kinase EutP	NA	NA	NA	NA
WP_000356956.1\|2724289_2724625_-	ethanolamine utilization microcompartment protein EutS	NA	NA	NA	NA
WP_000342632.1\|2724916_2727196_-	NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase	NA	NA	NA	NA
WP_001003720.1\|2727484_2728435_+	transaldolase	A0A127KNC6	Cyanophage	9.7e-11	30.8
WP_000087317.1\|2728454_2730458_+	transketolase	NA	NA	NA	NA
WP_001270532.1\|2730534_2731578_-	DUF1176 domain-containing protein	NA	NA	NA	NA
WP_001296284.1\|2731703_2732279_-	GDP-mannose pyrophosphatase NudK	NA	NA	NA	NA
WP_001078900.1\|2732346_2734326_-	formate-dependent uric acid utilization protein AegA	NA	NA	NA	NA
WP_000636131.1\|2734531_2736250_+	nitrate/nitrite two-component system sensor histidine kinase NarQ	NA	NA	NA	NA
WP_001082402.1\|2736336_2739510_-	autotransporter adhesin glycoprotein EhaJ	A0A2L1IV18	Escherichia_phage	7.6e-44	24.6
WP_000069202.1\|2739513_2740749_-	adhesin-glycosylating O-heptosyltransferase EhaJ	NA	NA	NA	NA
WP_001273135.1\|2741886_2745000_+	multidrug efflux RND transporter permease AcrD	NA	NA	NA	NA
WP_001386977.1\|2745098_2745158_-	protein YpfM	NA	NA	NA	NA
WP_000258253.1\|2745538_2745895_+	ArsC family reductase	NA	NA	NA	NA
WP_001277801.1\|2745898_2747026_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_000383836.1\|2747053_2747254_+	YpfN family protein	NA	NA	NA	NA
WP_000679819.1\|2747334_2748033_-	esterase	NA	NA	NA	NA
WP_000829364.1\|2748106_2750122_-\|tRNA	tRNA cytosine(34) acetyltransferase TmcA	NA	NA	NA	NA

DBSCAN-SWA_10

2769609 : 2814857

Salmonella_phage(59.62%)

terminase,integrase,tail,holin

attL 2771447:2771462|attR 2811744:2811759

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000017553.1\|2769609_2769762_-	hypothetical protein	G9L6F3	Escherichia_phage	4.9e-18	94.0
WP_000076001.1\|2769779_2769971_+	DUF2633 family protein	G9L6F2	Escherichia_phage	7.3e-27	100.0
WP_001311989.1\|2770281_2770800_+	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	2.9e-62	99.4
WP_000755178.1\|2770815_2771355_+	DUF5384 family protein	G9L6F0	Escherichia_phage	1.4e-43	98.9
2771447:2771462	attL	NA	NA	NA	NA
WP_012578972.1\|2771572_2772055_-	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	5.7e-68	87.5
WP_000354071.1\|2772051_2772678_-	glycoside hydrolase family 19 protein	T1SBJ3	Salmonella_phage	1.5e-113	95.7
WP_000207017.1\|2772667_2772976_-\|holin	phage holin family protein	T1SA10	Salmonella_phage	5.8e-50	98.0
WP_001275998.1\|2772962_2773367_-	membrane protein	T1SA79	Salmonella_phage	9.9e-66	100.0
WP_000751339.1\|2773563_2774571_+	hypothetical protein	NA	NA	NA	NA
WP_012578973.1\|2774664_2775738_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	3.9e-24	29.2
WP_000218894.1\|2775767_2778455_-	hypothetical protein	T1S9Y2	Salmonella_phage	5.6e-96	73.2
WP_001189556.1\|2778653_2778914_+	hypothetical protein	T1SA06	Salmonella_phage	2.9e-42	98.8
WP_001248449.1\|2779114_2781589_-	hypothetical protein	T1S9I6	Salmonella_phage	0.0e+00	98.4
WP_000119842.1\|2781593_2783396_-	hypothetical protein	T1SAQ5	Salmonella_phage	1.6e-304	96.2
WP_001143616.1\|2783392_2785903_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	0.0e+00	82.8
WP_000337194.1\|2785915_2786458_-	hypothetical protein	T1SA02	Salmonella_phage	2.8e-71	98.9
WP_000588339.1\|2786457_2786922_-	hypothetical protein	T1SA73	Salmonella_phage	2.0e-86	98.7
WP_000885914.1\|2786921_2789399_-	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	98.5
WP_000179046.1\|2789398_2790004_-	hypothetical protein	T1SAQ2	Salmonella_phage	2.6e-110	98.5
WP_000366671.1\|2790003_2790327_-	hypothetical protein	A0A193GYH8	Enterobacter_phage	1.5e-35	71.8
WP_000012264.1\|2790378_2790759_-	hypothetical protein	G9L6C7	Escherichia_phage	2.1e-25	52.8
WP_000599566.1\|2790769_2791210_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	7.0e-65	89.7
WP_000268705.1\|2791261_2792248_-	hypothetical protein	A0A193GZ49	Enterobacter_phage	1.7e-164	86.6
WP_001047889.1\|2792262_2792973_-	peptidase	T1SAP9	Salmonella_phage	1.6e-63	81.9
WP_000619835.1\|2792987_2793533_-	hypothetical protein	S4TSV9	Salmonella_phage	9.7e-40	58.8
WP_000968687.1\|2793529_2793829_-	hypothetical protein	T1SBI9	Salmonella_phage	2.0e-31	67.3
WP_000852153.1\|2793825_2795496_-\|tail	tail protein	T1S9Z7	Salmonella_phage	0.0e+00	98.9
WP_000334867.1\|2795510_2795717_-	hypothetical protein	T1SA67	Salmonella_phage	5.7e-09	100.0
WP_000031196.1\|2796588_2797020_+	hypothetical protein	A0A248SKX0	Klebsiella_phage	6.1e-37	54.9
WP_000123109.1\|2797063_2798545_-	hypothetical protein	M1F3C4	Salmonella_phage	1.3e-293	98.6
WP_172437434.1\|2798541_2799216_-\|terminase	terminase small subunit	M1F219	Salmonella_phage	8.7e-115	98.2
WP_001140120.1\|2799238_2799577_-	hypothetical protein	Q858C6	Salmonella_phage	2.3e-47	86.6
WP_012578976.1\|2800110_2800407_-	hypothetical protein	A0A2R2YB59	Pseudomonas_phage	8.2e-09	65.1
WP_000856943.1\|2800417_2800624_-	hypothetical protein	A0A2D1GLS1	Escherichia_phage	2.9e-29	88.1
WP_029694141.1\|2800626_2800842_-	hypothetical protein	NA	NA	NA	NA
WP_000828691.1\|2801238_2801580_-	hypothetical protein	T1SA23	Salmonella_phage	2.6e-43	76.3
WP_001066738.1\|2801697_2802483_-	hypothetical protein	A0A193GYX1	Enterobacter_phage	2.2e-138	89.7
WP_000086426.1\|2802479_2803286_-	helix-turn-helix domain-containing protein	Q286X4	Escherichia_phage	1.2e-91	78.5
WP_000402891.1\|2803301_2803502_-	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	2.5e-22	75.8
WP_001278768.1\|2803649_2803883_-	hypothetical protein	T1SAR5	Salmonella_phage	1.2e-39	100.0
WP_000836620.1\|2804038_2804635_+	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	1.1e-105	98.0
WP_001198622.1\|2804859_2805009_+	hypothetical protein	T1SA20	Salmonella_phage	1.1e-14	70.2
WP_172437433.1\|2805041_2805965_+	hypothetical protein	M9P0E1	Enterobacteria_phage	1.6e-50	79.7
WP_000548052.1\|2805972_2806275_+	hypothetical protein	T1SA88	Salmonella_phage	6.5e-46	97.0
WP_001091673.1\|2806271_2807093_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A193GYK2	Enterobacter_phage	9.1e-159	97.4
WP_000063813.1\|2807089_2807971_+	recombinase RecT	T1SBJ5	Salmonella_phage	4.3e-154	94.5
WP_000816432.1\|2808017_2808266_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	1.5e-32	81.7
WP_000041115.1\|2808375_2808675_+	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	3.1e-48	99.0
WP_000184078.1\|2808667_2808826_+	DUF1317 family protein	T1SAR0	Salmonella_phage	3.5e-19	86.5
WP_000664383.1\|2808822_2809536_+	hypothetical protein	R9VWB9	Serratia_phage	4.0e-94	70.0
WP_001013665.1\|2809532_2810126_+	adenine methylase	T1SA14	Salmonella_phage	1.2e-115	98.5
WP_000177704.1\|2810122_2810302_+	hypothetical protein	T1SA82	Salmonella_phage	2.4e-24	100.0
WP_000954549.1\|2810298_2811552_-\|integrase	site-specific integrase	T1S9J3	Salmonella_phage	1.9e-232	96.4
WP_000138264.1\|2811744_2813322_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
2811744:2811759	attR	NA	NA	NA	NA
WP_001296289.1\|2813390_2814857_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.9

DBSCAN-SWA_11

2886230 : 3005565

111

Escherichia_phage(19.44%)

protease,integrase,tail,transposase,tRNA

attL 2876625:2876641|attR 2981138:2981154

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2876625:2876641	attL	NA	NA	NA	NA
WP_001305240.1\|2886230_2886767_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190646.1\|2886791_2887427_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_012578985.1\|2887635_2888484_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001196297.1\|2888539_2888800_+	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	3.8e-18	53.5
WP_000128777.1\|2888993_2889074_-	type I toxin-antitoxin system toxin ShoB	NA	NA	NA	NA
WP_000986038.1\|2889494_2889875_-	holo-ACP synthase	NA	NA	NA	NA
WP_001309669.1\|2889874_2890606_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399398.1\|2890617_2891346_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000020737.1\|2891357_2892263_-	GTPase Era	NA	NA	NA	NA
WP_001068343.1\|2892259_2892940_-	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	5.6e-21	39.6
WP_000002542.1\|2893210_2894185_-	signal peptidase I	NA	NA	NA	NA
WP_000790169.1\|2894200_2896000_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	41.9
WP_000589053.1\|2896197_2896677_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812053.1\|2896673_2897630_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168459.1\|2897629_2898280_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_001295364.1\|2898312_2898888_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001303621.1\|2898884_2899040_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_001094401.1\|2899295_2900918_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083664.1\|2900902_2901640_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|2901771_2903106_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_001386374.1\|2903138_2904020_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000627804.1\|2904764_2905148_-	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	4.7e-33	70.9
WP_001262723.1\|2905452_2906142_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	2.1e-55	52.1
WP_000997418.1\|2906189_2907227_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|2907433_2907853_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001339408.1\|2907921_2908620_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082956.1\|2908651_2911312_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|2911425_2912781_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001339409.1\|2912826_2913150_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000852123.1\|2913146_2914445_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	2.2e-45	32.2
WP_001235102.1\|2921726_2924300_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000040119.1\|2924429_2925161_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079111.1\|2925157_2926138_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|2926272_2927010_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|2928380_2928722_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|2928825_2928873_+	hypothetical protein	NA	NA	NA	NA
WP_000200108.1\|2928971_2930132_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225221.1\|2930174_2931296_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168045.1\|2931306_2932377_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_001339413.1\|2932587_2932953_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212401.1\|2933100_2933619_+	YfiR family protein	NA	NA	NA	NA
WP_000969004.1\|2933608_2934835_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589817.1\|2934850_2935333_+	OmpA family protein	NA	NA	NA	NA
WP_001408077.1\|2935536_2936466_-	hypothetical protein	NA	NA	NA	NA
WP_000503755.1\|2936797_2937292_+\|tail	tail fiber protein	K7P7Q7	Enterobacteria_phage	4.1e-45	59.8
WP_000548501.1\|2937291_2937894_+\|tail	tail fiber assembly protein	Q9MCR5	Enterobacteria_phage	6.2e-96	90.3
WP_001106833.1\|2937865_2938306_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.6e-53	69.7
WP_032160959.1\|2938327_2938717_-	hypothetical protein	M1FN94	Enterobacteria_phage	1.9e-13	54.1
WP_001195986.1\|2938746_2939325_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	2.9e-79	80.2
WP_001286668.1\|2939389_2940577_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	3.8e-190	82.5
WP_001207671.1\|2940589_2941108_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.0e-75	80.2
WP_000361834.1\|2941170_2941443_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	1.3e-29	78.8
WP_000763326.1\|2941484_2941604_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
WP_000069482.1\|2941596_2944026_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	2.4e-279	79.3
WP_000978925.1\|2944037_2944502_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	4.5e-62	78.4
WP_000884170.1\|2944504_2945677_+	phage late control D family protein	Q6K1G4	Salmonella_virus	4.5e-167	78.0
WP_000972008.1\|2945753_2945972_+	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	8.6e-32	81.9
WP_000948614.1\|2946009_2946732_-	hypothetical protein	NA	NA	NA	NA
WP_000065253.1\|2946937_2947285_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264790.1\|2947326_2948094_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|2948124_2948673_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|2948691_2948940_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460035.1\|2949076_2950438_-	signal recognition particle protein	NA	NA	NA	NA
WP_001338897.1\|2950604_2951396_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|2951416_2952703_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|2952757_2953351_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059176.1\|2953473_2954352_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880896.1\|2954437_2956099_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|2956247_2956589_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117834.1\|2956650_2956941_-	RnfH family protein	NA	NA	NA	NA
WP_000600193.1\|2956930_2957407_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|2957538_2958021_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_001339422.1\|2960782_2961100_+\|integrase	integrase arm-type DNA-binding domain-containing protein	A0A0R6PGM3	Moraxella_phage	1.6e-10	46.8
WP_001816740.1\|2961428_2961725_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	4.6e-20	47.9
WP_001339425.1\|2961749_2961995_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.1e-16	50.7
WP_071526065.1\|2964405_2964507_+\|transposase	transposase	NA	NA	NA	NA
WP_001034000.1\|2964706_2968624_-\|protease	serine protease autotransporter toxin EspC	Q9LA58	Enterobacterial_phage	3.0e-223	38.2
WP_000606941.1\|2969193_2970366_-	hypothetical protein	NA	NA	NA	NA
WP_012578991.1\|2973373_2973754_+	hypothetical protein	NA	NA	NA	NA
WP_000993124.1\|2974061_2975039_+	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_000271979.1\|2975058_2976327_+	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_000772826.1\|2976349_2977798_+	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000097680.1\|2977811_2979092_+	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	4.9e-34	30.3
WP_001298180.1\|2979328_2980729_+	GABA permease	NA	NA	NA	NA
WP_000156817.1\|2980749_2981412_+	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
2981138:2981154	attR	NA	NA	NA	NA
WP_000522415.1\|2981412_2981862_-	potassium binding protein Kbp	A0A090DBR9	Clostridium_phage	2.0e-06	39.5
WP_000508177.1\|2981945_2982104_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000137287.1\|2982286_2982586_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001229436.1\|2982595_2983120_+	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA
WP_000115381.1\|2983166_2983571_-	DNA-binding protein StpA	NA	NA	NA	NA
WP_000492656.1\|2984237_2984687_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_000281320.1\|2984723_2985068_-	YgaC family protein	NA	NA	NA	NA
WP_001295174.1\|2985219_2985549_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_000209795.1\|2987025_2987457_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_001223227.1\|2987665_2987911_+	glutaredoxin-like protein NrdH	Q5K5J3	Oenococcus_phage	1.8e-06	35.3
WP_000080940.1\|2987907_2988318_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	3.0e-17	43.5
WP_000246589.1\|2988290_2990435_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.1e-195	48.5
WP_000777941.1\|2990444_2991404_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	9.1e-134	71.8
WP_000985495.1\|2991760_2992963_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.9e-28	39.4
WP_000774965.1\|2992955_2994020_+	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_001216533.1\|2994077_2995070_+	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000165669.1\|2995518_2996703_+	MFS transporter	NA	NA	NA	NA
WP_000445658.1\|2996826_2997564_+	L-valine exporter subunit YgaZ	NA	NA	NA	NA
WP_000119749.1\|2997553_2997889_+	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_000378442.1\|2997979_2998510_+	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA
WP_001295175.1\|2998636_2999809_+	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_001296316.1\|2999825_3001364_+	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001097125.1\|3001621_3002329_+	RNA ligase family protein	NA	NA	NA	NA
WP_000638139.1\|3002325_3003438_+	AAA family ATPase	NA	NA	NA	NA
WP_000244358.1\|3003625_3004999_+\|transposase	IS4-like element ISEc13 family transposase	NA	NA	NA	NA
WP_000526113.1\|3005106_3005565_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	8.5e-13	32.3

DBSCAN-SWA_12

3048333 : 3055473

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000103866.1\|3048333_3050895_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.7e-31	20.8
WP_001141306.1\|3051000_3051657_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	8.6e-51	46.6
WP_001296319.1\|3051707_3052475_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	9.7e-70	57.4
WP_000847970.1\|3052670_3053579_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	4.3e-117	76.9
WP_000590412.1\|3053575_3054838_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.8e-135	61.4
WP_001279001.1\|3054834_3055473_+	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT827011

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection