CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT700188	Negativicoccus massiliensis strain Marseille-P2082 genome assembly, chromosome: contig00001	3 crisprs	cas9,cas1,cas2,csn2,csa3,WYL,DEDDh,cas3	0	5	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT700188_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT700188_1

164487-165117

TypeII

Consensus_repeat	Method
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACCT	PILER-CR
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CRISPRCasFinder
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CRT
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	PILER-CR

9 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_LT700188_1

>merge|NZ_LT700188|1|164487-165117|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACCGAAAGAATTAGCGGACAGAAAAATCGACAGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACTAAGGCGGAGAAAAAGGACTTTACCCACCAGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACCTCTCTCCCTGCTTTCTGACTAAAGTATAAGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAACGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAACGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAACGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAGCGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACAGTTGCGGTCACCGGAGCGACCACCGAGGTGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACCTTCCAGCCGTGCTGTTTGGCAAGCATGAAGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAGC

>NZ_LT700188|1|1|164487-164657|PILER-CR
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACCGAAAGAAT	TAGCGGACAGAAAAATCGAC
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACTAAGGCGGA	GAAAAAGGACTTTACCCACCAGTTTGAG
AGTAGTGTCATATCCAATCCATCTCAAACCTCTCTCCCTGCTTTCTGACTAAAGTATAAGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAACGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAACGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAACG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAGCG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	AGTTGCGGTCACCGGAGCGACCACCGAGGT
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CTTCCAGCCGTGCTGTTTGGCAAGCATGAA


>NZ_LT700188|1|1|164487-165117|CRISPRCasFinder
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CGAAAGAATTAGCGGACAGAAAAATCGAC
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	TAAGGCGGAGAAAAAGGACTTTACCCACC
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CTCTCTCCCTGCTTTCTGACTAAAGTATA
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAAC
GGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAAC
GGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAAC
GGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAGC
GGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	AGTTGCGGTCACCGGAGCGACCACCGAGG
TGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CTTCCAGCCGTGCTGTTTGGCAAGCATGA
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAGC

>NZ_LT700188|1|1|164488-165117|CRT
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CGAAAGAATTAGCGGACAGAAAAATCGACA
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	TAAGGCGGAGAAAAAGGACTTTACCCACCA
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CTCTCTCCCTGCTTTCTGACTAAAGTATAA
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAACG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAACG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAACG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAGCG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	AGTTGCGGTCACCGGAGCGACCACCGAGGT
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CTTCCAGCCGTGCTGTTTGGCAAGCATGAA
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAGC

>NZ_LT700188|1|2|164818-165117|PILER-CR
	TAGCGGACAGAAAAATCGAC
AGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACTAAGGCGGA	GAAAAAGGACTTTACCCACCAGTTTGAG
AGTAGTGTCATATCCAATCCATCTCAAACCTCTCTCCCTGCTTTCTGACTAAAGTATAAGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAACGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAACGGCGGCAGCAGATTTTAGCGAAGATTAACGGTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAACG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	GGCGGCAGCAGATTTTAGCGAAGATTAGCG
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	AGTTGCGGTCACCGGAGCGACCACCGAGGT
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAAC	CTTCCAGCCGTGCTGTTTGGCAAGCATGAA
GTTTGAGAGTAGTGTCATATCCAATCCATCTCAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT700188.1\|WP_024049166.1\|178387_178672_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_LT700188.1\|WP_075938611.1\|156678_157800_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_LT700188.1\|WP_083631498.1\|158416_162610_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_LT700188.1\|WP_120718267.1\|154057_154975_+\|manganese-transporter	unknown	unknown	gnl\|CDD\|238498
NZ_LT700188.1\|WP_075938620.1\|168721_169909_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_LT700188.1\|WP_075938623.1\|174108_176310_+\|DNA-helicase-PcrA	unknown	unknown	gnl\|CDD\|273429
NZ_LT700188.1\|WP_083631499.1\|167554_168034_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|377217
NZ_LT700188.1\|WP_075938624.1\|176313_178326_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_LT700188.1\|WP_075938614.1\|163480_163801_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_LT700188.1\|WP_075938619.1\|168155_168713_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_LT700188.1\|WP_075938622.1\|173145_174069_+\|manganese-dependent-inorganic-pyrophosphatase	unknown	unknown	gnl\|CDD\|235458
NZ_LT700188.1\|WP_083631663.1\|155789_156695_+\|zinc-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|334323
NZ_LT700188.1\|WP_075938616.1\|165470_166565_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340861
NZ_LT700188.1\|WP_075938607.1\|152610_153351_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NZ_LT700188.1\|WP_075938609.1\|155041_155806_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_LT700188.1\|WP_075938617.1\|166595_167225_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT700188.1\|WP_075938615.1\|163797_164463_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl\|CDD\|213407
NZ_LT700188.1\|WP_075938613.1\|162606_163491_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_LT700188.1\|WP_075938621.1\|169919_173042_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_LT700188.1\|WP_075938606.1\|152025_152598_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|378317

Protein	Function_ID	Function_description	E-value
NZ_LT700188.1\|WP_075938611.1\|156678_157800_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.03184e-53
NZ_LT700188.1\|WP_083631498.1\|158416_162610_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	6.95944e-139
NZ_LT700188.1\|WP_120718267.1\|154057_154975_+\|manganese-transporter	gnl\|CDD\|238498	cd01016, TroA, Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	1.07981e-135
NZ_LT700188.1\|WP_075938620.1\|168721_169909_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.46587e-69
NZ_LT700188.1\|WP_075938623.1\|174108_176310_+\|DNA-helicase-PcrA	gnl\|CDD\|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LT700188.1\|WP_024049166.1\|178387_178672_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	8.68438e-32
NZ_LT700188.1\|WP_075938624.1\|176313_178326_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_LT700188.1\|WP_075938614.1\|163480_163801_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.63674e-24
NZ_LT700188.1\|WP_075938619.1\|168155_168713_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	5.57139e-09
NZ_LT700188.1\|WP_075938622.1\|173145_174069_+\|manganese-dependent-inorganic-pyrophosphatase	gnl\|CDD\|235458	PRK05427, PRK05427, putative manganese-dependent inorganic pyrophosphatase; Provisional.	4.12507e-148
NZ_LT700188.1\|WP_083631663.1\|155789_156695_+\|zinc-ABC-transporter-permease	gnl\|CDD\|334323	pfam00950, ABC-3, ABC 3 transport family.	2.68648e-52
NZ_LT700188.1\|WP_075938616.1\|165470_166565_+\|hypothetical-protein	gnl\|CDD\|340861	cd17507, GT28_Beta-DGS-like, beta-diglucosyldiacylglycerol synthase and similar proteins. beta-diglucosyldiacylglycerol synthase (processive diacylglycerol beta-glucosyltransferase EC 2.4.1.315) is involved in the biosynthesis of both the bilayer- and non-bilayer-forming membrane glucolipids. This family of glycosyltransferases also contains plant major galactolipid synthase (chloroplastic monogalactosyldiacylglycerol synthase 1 EC 2.4.1.46). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	1.71626e-71
NZ_LT700188.1\|WP_075938607.1\|152610_153351_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	2.35845e-148
NZ_LT700188.1\|WP_075938609.1\|155041_155806_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	2.04022e-116
NZ_LT700188.1\|WP_083631499.1\|167554_168034_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|377217	pfam04074, DUF386, Domain of unknown function (DUF386). This family consists of conserved hypothetical proteins, typically about 150 amino acids in length, with no known function.	2.34822e-33
NZ_LT700188.1\|WP_075938615.1\|163797_164463_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	9.15955e-43
NZ_LT700188.1\|WP_075938613.1\|162606_163491_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.17634e-88
NZ_LT700188.1\|WP_075938621.1\|169919_173042_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_LT700188.1\|WP_075938606.1\|152025_152598_+\|RNA-methyltransferase	gnl\|CDD\|378317	pfam09936, Methyltrn_RNA_4, SAM-dependent RNA methyltransferase. This family has a Rossmanoid fold, with a deep trefoil knot in its C-terminal region. It has structural similarity to RNA methyltransferases, and is likely to function as an S-adenosyl-L-methionine (SAM)-dependent RNA 2'-O methyltransferase.	1.5159e-109

>NZ_LT700188.1|WP_075938615.1|163797_164463_+|type-II-A-CRISPR-associated-protein-Csn2
MILSHPVFDAPIDLAHNNLVVLEHPLLYRALVAELIAQSEGETGRFLLMENYEEKSIGKYLSIIHNPFRLCENDHKMRTALYKLLEKEVQTLDFEYYKEVESKILQFLQHVSMQSAYPLTMTDSISMTDIFKLGQLQLELTKDSVPERLYEYIRALHRLAGAQCVVMYNVRNIFTDTEAEVFLKEISEQELSVLFLERSVPPIVTKYEKLYIVDQDLCEIS
>NZ_LT700188.1|WP_075938614.1|163480_163801_+|CRISPR-associated-endonuclease-Cas2
MSYRFMRILVLFDLPTETSLDLREYRRFRKILLEMGFIMLQESVYTKIALTTTISEQITNRLRHEKPANGLVQILRVTEKQFENMETLVGEYNSNVIDTDEKVVIL
>NZ_LT700188.1|WP_075938613.1|162606_163491_+|type-II-CRISPR-associated-endonuclease-Cas1
MSWRTVVITKPAKLELRLNYLVVRSIDHVEKISLTELGALVIETLQVSITSSLISALLAQEIRIIICDEHHDPQGEILPYYGCHDCSRKIQMQMGWQETTKKLLWQQIVRQKIMNQRKTLEYFCSDATDVVAKLAQYETQVEIGDATHRESLVAKEYFPALLGKGFTRAAETAQNAALNYGYQIIISIFSREIKIAGYLTELGVFHDSQHNHFNLSSDLMEPWRPVVDAFVREKEWEQFAVEEKHMMQRLVTQEVTFRGQKQSVPNAIRMYVNSVFQALNHNDISQVHFFNHEL
>NZ_LT700188.1|WP_083631498.1|158416_162610_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MRRTFAMKKNNDYYIGLDMGTNSVGWAVTDTKGRLQRFNKKDMWGSRLFEEAKTAAERRTFRTSRRRYDRVRQRIEFLQDIFAPIIAKKDFEFFMRLNESKFYPEDKKTDGRFALFNDADFTDVEYFKLYPTIYHLRAALLKPNHITDPRLLYLAIHHIVKNRGHFLFAITDMESIRSFQMIYTQLSEHLKRINPDFELPVDVQDKFAAILLNEELNKRDKKKQLKELCPHEDKRLEYAFKAIIGDKANLKDIFGVEEYDEGTKKEVNFEKADYDADKDEIESVIKENIHVLNALKAVYDWTVLTKILGDYAYISDSQVALYDAHAKDLRILKSLIKKYAKSQYADAFRHENVKGNYANYVGSTNYDNKQPVIDNPSVTQEDINKYFAAILSDITPDESDRESYQYIAERLDKEEALPKLRTKANSVLPHQIHKIELEKILANAAMNFPFLQEKDSSGYTAAQKIVKIMTFRIPYYVGPLNTYHHVDQGGHAWMVRKAEGKITPWNFDEKVDREASAEKFIRNMTNKCTYLIGKDVIPKQSLLYSRYKVLNELNNLKVNGVPISVELKQKIYEELFKKQVNVTFKQLKTFLKTQGEDADEIILSGVDEAAHKFTNNLQTYHKFQAIFGDTIEFEPQRSMVEDIIRWKCLMGDDIAMWKHKIEKEYGDQLSDEQLKQITRLNFNGWSRLSQEFLTDVPGVDIESGEVYSGIMDALWKTNENVMQLLSSRFTFAEKVKKQNQGTGQITKITYDEVMKDTYLSPAVKRSVWQAITLVEEIRKIRKADPKRIFVEMTRQPDVIKERKLSRRTQLLRTYIAIGNDIAEYEKEHVSTLIKQLESKKDEDLRQKKLYLYFTQMGRCMYTGERIDLSSLLHDTNSNIYDIDHIYPRSLTKDDSLDNTVLCKKEINLQKGNKYLHQAFTAKELEKQYGYWKALKEKKLISERKFSRLMRTTDLTADELAGFISRQLVETSQMVKATADILEKIYPNVTIVYVKARTVSDFRHDYDLPKVRALNDCHHAHDAYLNIVVGNVYYEKFTKSPFRFIQNQKGKGEIKYNLYRLFDRDVKVGDRIIWNTKEDLAHVKATLERDTVNVVLMPVERHGKFYDATIQKKSTTKETMVLPLKGSDERLQDISKYGYYRSPSGMSFMVVQHEVKGKKRVTIEQALLVYKNKLKSEKDYAKYCEDFLKLQKPKVLFKNIKFGSKILFDGYPYLLKGRTGKKITLADAQSLFLSNRELNILKRVTKISDDIDHKVKSRVKITDEEWATLWKSVVEQNVKGKFRDRLGTLNGILKGRQIKLSEDEQKRVNELDSKDQEEYLSQILLERFLRFTTEEKTRLLLQVISFSSNTRGVNLCLIGGSERTGTIAISNNITDHSVILINESPTGLFTNRTVLNQP
>NZ_LT700188.1|WP_075938611.1|156678_157800_+|metal-ABC-transporter-permease
MSAQTEIILIAMLAAFACALPGVFLVLRKMSMVADAITHTVFLGIVIAFFATENLNSPWLLIGATLMGCFTVWCTESLQRTRLVSEDASIGIVFPLLFSIGLILVNLYGSNVHLDTDSVLLGELAFAPFDRVRVNGADWGAVSMWVLTGICLLNTVVIVAVFKEWKLVTFDALLAAMYGFSPIWMHYLLMTLVSVTVVASFQAVGAILVIGLMIGPAATAYLLTKDLRKMLILAASIGALSAWLGTEIAFWLDVSIAGAIAGTIGGVFLLTVIATPKSGIIARYRRLKRLRLQYGEETVLFHLLTHEGTAVQAQEAGVGTLYEHLRWKPEFADLICRRLEAGHFVRIHRGMVHLTESGRARAYRVSETLFAEQ
>NZ_LT700188.1|WP_083631663.1|155789_156695_+|zinc-ABC-transporter-permease
MSPLSDYTFQIVAAGTMLLGLASGVTGTFAVLRKESLIGDGLPHASFPGVVAAFMFLAVKDLEVLLTGAAVASLLCMAAIALTVRYTKVKFDAALATFLAAFFGVGMMLMTYVQHTDNPNQAGLSKFIFGQAATMLARDVEITAAVAAMILLLAVIFWKELKLVAFDADFARSLQLPVRMAQLVYGLMLVASIIIGLQSVGAILMSSLLIAPAVAARQWTDNLGTMAVLAGGIGALSCGIGTYASAIVKGLPTGPAIVVAASIVVLLSLLFAPGRGIIARYRVHREARRRWKEGDINVRPN
>NZ_LT700188.1|WP_075938609.1|155041_155806_+|metal-ABC-transporter-ATP-binding-protein
MEWAVEVEDMTVAYDERPVLWDVDMKIPKGSLAAIVGPNGAGKSTLIKAMLGLLTKISGSVKFYLDGRLAVSRDDFKRIAYVPQSGSVDWDFPTTVLDVVLMGRYGHLGWFKRPGAAEREMAMDVLRKTGMEAYVDRQISRLSGGQQQRVFLARALIQEADIYFMDEPFKGVDAKTEKAIVALLQEMKSRGKTVIVVHHDLATVAEYFDWVTMINLRRIAMGPVEEVFTSEHIEAAYNARNPLRREGLHAVAAE
>NZ_LT700188.1|WP_120718267.1|154057_154975_+|manganese-transporter
MLAVMVMVLVGCGGTKDDTHAAAPGKLKVVATTTMLADLSRQIGGDAVEVTGLMGPGVDPHLYQASAGDVKVMTDADVVVYNGLHLEGKMGEIFSKLKQDKKATICVANNLDPSTLLQYEDDDGVQATDPHIWFDVKNWMLAAEEVCKGLAAKDPAHKDLYKANYEKYLAELKKADEYVAKRAAEIPQERRVLVTAHDAFQYFARAYGFTVKGLQGVSTEAEAGAIDVRELSDFIVTHQIRSIFVESSVPHKTIEAVQEACKAKGWDVKIGGELYSDSCGAPGTPGGDYIGMVKENIDTIVTGLK
>NZ_LT700188.1|WP_075938607.1|152610_153351_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MSGHSKWSNIKHKKGKNDAIRAKITTKIGKEITVAARLGGADPTGNMRLKLALQKARENNVPKDNIQRAIQKGIGATDGGDYEEITYEGYGPSGVALVVEVMTDNRNRAAADVRHAFSKHGGNLGESGSVTWMFKRKGVFVLPGDAGDEEELMMMALDAGAEDFKNDDDDYEVLTTPENYDAVEKAFQDADIEMTISKITMVPDTTIALDGDDARKMQNLLDALDDLDDVKDVYSNAELPDDEEEE
>NZ_LT700188.1|WP_075938606.1|152025_152598_+|RNA-methyltransferase
MAHFSIGLVHYPIYNKHGDIITTALTNYDIHDLARSATTYGVENYYIIHPNFAQRKLAEEIMEHWQTGFGSTYNPDRKDAFAHVKLREKLAQVREEIHRETGHPPQIITTDARTYPNTVTYRQVREWLKTTDNSYLLLFGTGYGMTKEAMQSFDYILEPIYGAGAYNHLSVRSAAAIMLDRLCGTEWWQA
>NZ_LT700188.1|WP_075938616.1|165470_166565_+|hypothetical-protein
MKYKPKVCLLSASIGQGHVQAARAVAEALKRHPTGYRVQSLDFLSRDMISLDYWMRETYIKMIDLFPLIYDLLYHQSQRRHGGKQVRSLLARTFRSRMRHLLEVLSPDALVLTHPFPAAAAAKLVEKGELHIPIVTVITDFDLHQLWVYKNITAYCVPSVQVRDELIAAGIEKERVFVTGIPIMQRFYEMKKASLREPGTVLIMGGGTGLGSVKDILWRLTQVEAVQRVIVVTGQNLTLFDEIQEMRDELRVPLELYGYTNEIPRLMARASLLVTKPGALTTTEAMTMHLPMLLVDAIPGQEEANAAHLEKIGCAKWILREQLVPVTREFFAGEATWYTGDQQKTQHSAQLVADIIDSLVTFEN
>NZ_LT700188.1|WP_075938617.1|166595_167225_-|hypothetical-protein
MNTSTGQKNRWWYVLLAALILVAGVLLFYYGYYIRTPKYAVMDAADAAREHNLTRFERRVDIDTLVQDGFDDVFRDSANAGTSMPAALMYAMRPIFIQALSHALRSQVEQKNSAPIISIPLVTNEKEAPPSNYEVTDIQTLTSEDTNAEVLVRLREINRDRYIPLHLSLVKDSTGFWRIKRLQNAAEVYDAYRQISGATLLPAAPVPSK
>NZ_LT700188.1|WP_083631499.1|167554_168034_+|YhcH/YjgK/YiaL-family-protein
MYMFSGELSLLRKYQDHLHERVYKYLEMLRNANWDEMTDGRMELYDGDYMNIETGMTKPVEECRWEAHRRHLDIQYVVTGAENVEWAPLLLGKVEEDRPDDDVYFYAAESIAAGATIHHQAGRFSIFTPEDLHRPLLAPQDPASIRKAVVKVSLKNLHK
>NZ_LT700188.1|WP_075938619.1|168155_168713_+|TetR/AcrR-family-transcriptional-regulator
MKDKILKTAEKVITRRGTKFTMDELAAALNMSKRTLYEQFASKEELIETIFLVRMDRWEEYHHKLMEDAEIPVERFLHDYFIPSSKDYLIVTSELLGLLLHHYPNVKEKLIARSENEWKRLEAYLTRQKAAGNIATPDVQVLIFILQSLMVFATSKYVENNDAKQYMKSLEDSIAVVLTGILPKK
>NZ_LT700188.1|WP_075938620.1|168721_169909_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRKHIWMALGAVVILALLFLGYSAYQKKAAGAAARQQPPTLVNAFTAFQSDTPLLQQYSGHVEAQQKVPVQARVTGYIVEKYVQGGQQVTAGQALYRIDARQYQSSLAAAQANTAQARANYESAVQDLERYRTLIAQGAISDQQFTRQQALVEQYRAVVEANEAQASIAGDNVADTVVRAPFSGTLGVDDLPVGNFVAAGQTPLVTISSTDPIFVTFDLTEAEYLKMTQRQNSSGAWGQDLKLQLADGSQYDETGQVVVIDQDMSGGGGQFTVKASFTNPQQILRQGMFVHVVSDTEIARNSILIPAQAVQPLLDKKIVTVVDAEHKVSQRPVEVGATYGPYVVITSGIVAGDTVVVEGQAKVRNGQAVQVKMLSRDEVEHPQTKQAAPAAGKQ
>NZ_LT700188.1|WP_075938621.1|169919_173042_+|multidrug-efflux-RND-transporter-permease-subunit
MARFFIDRPIFAIVIALVISIVGGLAMFGLPVDRYPVIAPPKVQVSAMYPGASSQVLSESVAEAIEKQIIGVDDFDSMVSSSSSIGMYSLSVQFETGTDADFASVQVQNRVAQAEAMLPDIVRQLGLNVRKSTSDMALVINLTSPNGTYDPTFLKNYFSLNYMDTLKSIPGVGNVQEFGSDYAMRVWLNPARMAQYKINASDIAAAVRMQNQEASAGSIGLNPSPETQQFQYQITVDGRLTDPQQFEEIVLRSNPDGSVVHLKDVARVELDAADYNFIARADGKPTAGIAFSLTSDANALETINAIKAELAKAQETFPDDMTYNIVIDNTDFVSASLEAVLHTFVEALILVLIIVYLFLQNWHSTLIPMIAVPVSLLGTFAAFTVLGFTVNTLTLFAMVLAIGLVVDDAIVVVEAVEYEMRYNHKSPREATILAMEKVQGPVIGVAVVLIAVFVPVAFMGGIMGVLYKQFALTIAVSVGISAFVALTLTPALCAMLLTENDNLNQETFHDRFFHAFNEKFDRLVESYGNALDSFVHKLGVAILSLAAVTIVGLFFFTQMPSAFVPNEDNGYFITSISLPEGATSQRTDAVVQKYMDYMMQQPGVEHVMGVTGFDILSGGLKQNSSMAFVKLKHWDERTGDDQSVQALVGKAFGFGFQTPEANVIAMNPPPVPGLGATGGFTMYLQNRSGDSTEKMFEVAQQFLAKVNQRPEIASAYTTFRMDTPAYHFNVDRDKAARSGVNVSDINTALSMFYGGTQINDFSAFGKSYKVIAQADQEFRMSPNANRELTVRNQQGEMLPLSSFITPEQRGSVAILTRYNNFPAIKVGGNAANGYSSGQALQALQEVAVEVLPSGYGFEFADQSAQEIKAGNQMLYVMSLALLFVFLSLAALYESWKIPFSVLLSVPAGFLGVAFFGWLFNINNDIYFQIGLLTIIGLAAKNAILIVEYAKIRVDHGMDHVKAAIEASKIRLRPILMTSLAFILGCLPLALSTGAGSVSRSEMGTTVVFGMLTATALGIFMIPMLFVAIESIGNDSKKSKE
>NZ_LT700188.1|WP_075938622.1|173145_174069_+|manganese-dependent-inorganic-pyrophosphatase
MAEMILVSGHKSPDTDTICSALVCAHWLRAQGKEAKAIRAGEINKETAFALDYFGSEAPELVTRVEAGQPMYLVDHNESKQAVDGMTDADVQGLIDHHRLGDFTTDQPILIRIEPVGCTGTILYSLYQQCGIEIPRQMAGLMLSAIISDTLLFRSPTCTERDRKAVQELAQIADVDYEKYGMDMLKAGADLSDKTAAELVLTDKKEFDGKKGTFSIAQLSVMDTQPILAQRDDLLRLLEEDRAAHNYEASFLMVTDILEESTDLLYTSQVETAIEAAFQVKGNAQTLHLPGVMSRKKQVAPPLLGAL
>NZ_LT700188.1|WP_075938623.1|174108_176310_+|DNA-helicase-PcrA
MIDYFTSLNDKQREGVQTIQGPVLILAGAGSGKTKALTSRIAYMLEQGISPQEILAITFTNKAAKEMKERVKKLVGASADHMWISTFHSFGARFLRREIDVIPPYTRQFTIYDAQDSQQVVKGILKEMNLDDKQFAPNALQARISNAKNNLQNARAAQEAADDFFAEKAAEVYARYEAILQANNALDFDDLLLLPAVILQRHADVRKAYQNRFRYILIDEYQDTNHAQYVLTQMLVGPEQNLCVVGDVDQSIYSWRGADVQNIIDFQRDYPRAKVLKLEQNYRSTQTILNAANHVIENNEHRPSKNLWTDQANGEPIYYYEAVSETDEAQFCAGEMQRLVSETPAKYGDMAVLYRTNAQSRAMEEALVRRGIAYTIVGGTRFYDRQEIKDVLAYLKVLQNPRDDVSVERIINVPKRGIGTTTVSRVKDAARLQGVSLFEMIMAADGIESLNAGTRKKLSAFSVLMLELMNTATTESVTDLLEAVLAHTELITSLLNDTDPRAQSRVENIGELVSVAKTYEDETEEPTLQGFLEQVALVNDVDTFEESSEKVTLMTLHSAKGLEFPIVFLIGMDEGLFPHARTLFAPDELEEERRLCYVGITRAEKILYLTHASSRTVFGSTNPYLVSRFVGEIPEDLVEKKENKNRIRWGQADRAKRTGQRVVSNASVGVTAPKGKVNARYDWRVGDRARHTKWGLGTVVEVRGEGERMQLKLEFPGRQVRLVMVKFAPLTKE
>NZ_LT700188.1|WP_075938624.1|176313_178326_+|NAD-dependent-DNA-ligase-LigA
MVEKTAAERARELRETLQHHSYLYYVLDQPEISDFEFDKLYRELVELETAHPELIMPDSPTQRVGAAPSGAFSKVTHQFPLYSLANAFSVGEVDAFAKRIQERLGSTAQVEYVTELKIDGLAINLIYENGHLTQCVTRGDGEVGEDVTANVKTIRSLPLFIKNAPARLDIRGEVYMPRQAFVELNEARDENGEAPFANCRNAAAGSLRQLDPRVTAARQLDFFAYAIGNAEETGITSQRELLETLQEYRFSVNPNYHLWHSVEEIGAEIKRWETARRDLAYDTDGLVIKVNDFAQQRVLGYTAKAPRWAIAYKYPPEEAKTKVTDIIVTLGRTGVLTPSADLEPVSLAGTVVRRATLHNADYIAEKDIRVGDTVLIHKAGEIIPEVIRVITEDRDGSESAFAMPHQCPVCGSEVTRIPGEVAYRCQNPSCPGILREKLIHFASRQAMNMDGVGPKVIDLMLEHGLLHDAADLYTLRVEDLVELPRFGKKRAENLVNAIAETKKRGLARLLFALGIRYVGTKAARLLAAAYPTYEKLQTATPQELATVDGIGETIAESLYTYLQMPQSIAFIHKLQDLGVVTDEEVSEPAADGIFSGEKVVLTGKLTRFNRTQAADLIVAQGGEVASSVSSKTTLVVAGEDAGSKLTKAEKLGITIWTEDDFENAVAKIEP
>NZ_LT700188.1|WP_024049166.1|178387_178672_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MELTAAEMVKVAHLARLEWDPKRAATLGQSLNTILTYMEELNELDTSNVPPTVHAVELTNVWREDVPQPSLDHEKALQNAPERDGRYFKVPKLM

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_LT700188_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT700188_2

519252-519331

Orphan

Consensus_repeat	Method
TCGCGGTACCACCCTAATTATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT700188_2

>merge|NZ_LT700188|2|519252-519331|CRISPRCasFinder
TCGCGGTACCACCCTAATTATCAAACAAAAAAGGATGGCACCCAGGGACGGAAAACTCCGCGGTACCACCCTAATTATCA

>NZ_LT700188|2|2|519252-519331|CRISPRCasFinder
TCGCGGTACCACCCTAATTATCA	AACAAAAAAGGATGGCACCCAGGGACGGAAAACT
CCGCGGTACCACCCTAATTATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT700188.1\|WP_075938912.1\|517324_518011_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|143483
NZ_LT700188.1\|WP_075938920.1\|525466_525838_-\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|319900
NZ_LT700188.1\|WP_075938905.1\|504659_505379_-\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NZ_LT700188.1\|WP_075938911.1\|516848_517310_-\|cell-division-protein-SepF	unknown	unknown	gnl\|CDD\|377370
NZ_LT700188.1\|WP_075938910.1\|516048_516852_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_LT700188.1\|WP_075938916.1\|521292_522663_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|235018
NZ_LT700188.1\|WP_083631527.1\|525917_528986_-\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_LT700188.1\|WP_075938908.1\|514644_515256_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377456
NZ_LT700188.1\|WP_075938915.1\|519968_520406_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380351
NZ_LT700188.1\|WP_075938918.1\|523692_524313_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT700188.1\|WP_075938914.1\|519531_519972_-\|peptide-methionine-(R)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|234692
NZ_LT700188.1\|WP_075938917.1\|522708_523647_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
NZ_LT700188.1\|WP_083631525.1\|512015_513233_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238536
NZ_LT700188.1\|WP_075938909.1\|515270_516056_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|225185
NZ_LT700188.1\|WP_083631526.1\|524753_525467_-\|tRNA-threonylcarbamoyladenosine-dehydratase	unknown	unknown	gnl\|CDD\|238384
NZ_LT700188.1\|WP_075938913.1\|518200_519190_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380548
NZ_LT700188.1\|WP_075939636.1\|520494_521259_+\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_LT700188.1\|WP_075939635.1\|505777_506446_-\|DUF1638-domain-containing-protein	unknown	unknown	gnl\|CDD\|377918
NZ_LT700188.1\|WP_075938919.1\|524325_524757_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_LT700188.1\|WP_075938907.1\|513770_514643_-\|polyamine-aminopropyltransferase	unknown	unknown	gnl\|CDD\|234843

Protein	Function_ID	Function_description	E-value
NZ_LT700188.1\|WP_075938912.1\|517324_518011_-\|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	1.97418e-113
NZ_LT700188.1\|WP_075938920.1\|525466_525838_-\|lactoylglutathione-lyase	gnl\|CDD\|319900	cd07233, GlxI_Zn, Glyoxalase I that uses Zn(++) as cofactor. This family includes eukaryotic glyoxalase I that prefers the divalent cation zinc as cofactor. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic glyoxalase I uses nickel. However, eukaryotic Trypanosomatid parasites also use nickel as a cofactor, which could possibly be explained by acquiring their GLOI gene by horizontal gene transfer. Human glyoxalase I is a two-domain enzyme and it has the structure of a domain-swapped dimer with two active sites located at the dimer interface. In yeast, in various plants, insects and Plasmodia, glyoxalase I is four-domain, possibly the result of a further gene duplication and an additional gene fusing event.	2.95597e-24
NZ_LT700188.1\|WP_075938905.1\|504659_505379_-\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	2.23392e-10
NZ_LT700188.1\|WP_075938911.1\|516848_517310_-\|cell-division-protein-SepF	gnl\|CDD\|377370	pfam04472, SepF, Cell division protein SepF. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This family also includes archaeal related proteins of unknown function.	1.25401e-28
NZ_LT700188.1\|WP_075938910.1\|516048_516852_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	3.7225e-86
NZ_LT700188.1\|WP_075938916.1\|521292_522663_+\|aminopeptidase	gnl\|CDD\|235018	PRK02256, PRK02256, putative aminopeptidase 1; Provisional.	0
NZ_LT700188.1\|WP_083631527.1\|525917_528986_-\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	6.00736e-73
NZ_LT700188.1\|WP_075938908.1\|514644_515256_-\|DivIVA-domain-containing-protein	gnl\|CDD\|377456	pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate mini-cells. Inactivation of divIVA produces a mini-cell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype. These proteins appear to contain coiled-coils.	4.4352e-33
NZ_LT700188.1\|WP_075938915.1\|519968_520406_-\|cupin-domain-containing-protein	gnl\|CDD\|380351	cd02222, cupin_TM1459-like, Thermotoga maritima TM1459 and related proteins, cupin domain. This family includes bacterial and archaeal proteins homologous to Thermotoga maritima TM1459, a manganese-containing cupin that has been shown to cleave C=C bonds in the presence of alkylperoxide as oxidant in vitro. Its biological function is still unknown. This family also includes Halorhodospira halophila Hhal_0468. Structures of these proteins show a cupin fold with a conserved "jelly roll-like" beta-barrel fold that form a homodimer.	3.3837e-36
NZ_LT700188.1\|WP_075938914.1\|519531_519972_-\|peptide-methionine-(R)-S-oxide-reductase	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	5.06328e-80
NZ_LT700188.1\|WP_075938917.1\|522708_523647_-\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	1.4092e-156
NZ_LT700188.1\|WP_083631525.1\|512015_513233_-\|hypothetical-protein	gnl\|CDD\|238536	cd01116, P_permease, Permease P (pink-eyed dilution). Mutations in the human melanosomal P gene were responsible for classic phenotype of oculocutaneous albinism type 2 (OCA2). Although the precise function of the P protein is unknown, it was predicted to regulate the intraorganelle pH, together with the ATP-driven proton pump. It shows significant sequence similarity to the Na+/H+ antiporter NhaD from Vibrio parahaemolyticus. Both proteins belong to ArsB/NhaD superfamily of permeases that translocate sodium, arsenate, sulfate, and organic anions across biological membranes in all three kingdoms of life. A typical ArsB/NhaD permease contains 8-13 transmembrane domains.	1.98288e-122
NZ_LT700188.1\|WP_075938909.1\|515270_516056_-\|RNA-binding-protein	gnl\|CDD\|225185	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown].	4.7643e-55
NZ_LT700188.1\|WP_083631526.1\|524753_525467_-\|tRNA-threonylcarbamoyladenosine-dehydratase	gnl\|CDD\|238384	cd00755, YgdL_like, Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.	3.74569e-89
NZ_LT700188.1\|WP_075938913.1\|518200_519190_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380548	cd06325, PBP1_ABC_unchar_transporter, type 1 periplasmic ligand-binding domain of uncharacterized ABC-type transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.	2.35885e-99
NZ_LT700188.1\|WP_075939636.1\|520494_521259_+\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	8.71563e-33
NZ_LT700188.1\|WP_075939635.1\|505777_506446_-\|DUF1638-domain-containing-protein	gnl\|CDD\|377918	pfam07796, DUF1638, Protein of unknown function (DUF1638). This family contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins. These proteins are expressed by archaeal species of the Methanosarcina genus.	2.54515e-29
NZ_LT700188.1\|WP_075938919.1\|524325_524757_-\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	9.59463e-68
NZ_LT700188.1\|WP_075938907.1\|513770_514643_-\|polyamine-aminopropyltransferase	gnl\|CDD\|234843	PRK00811, PRK00811, polyamine aminopropyltransferase.	3.09736e-146

>NZ_LT700188.1|WP_075938913.1|518200_519190_-|ABC-transporter-substrate-binding-protein
MQWSSKRWAVILGVVGIVAVGTQFFGKTTEAQGTDNPVVGIVQIAQHPSLDEANRGFVAALQEAYPGKAITIMQENAQGEQSNLKAIAQRFVSQNVQLIGAISTPAAQTMANETATIPIVGTAVSDYESAKLAKTNAAPGTNVTGTSDRTPETEQVQLLQQLLPTAKRVGIIYNSGEINSELQAKSFVSAAQAKGLSVTEATVSNVNDLAQVAQALSGRVDVIYVPTDNVIASALPTLINVTNAARIPVIGAAASYVQEGALAALSVDYYQIGYRAGEMAVKILKGNAQPQTLAIELPAAQAPLISRSAASTLGIAIDPELAKTSQLCD
>NZ_LT700188.1|WP_075938912.1|517324_518011_-|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTDIAANLEAVRERIRNARIRSGRVDHVQLVAVTKFHPVAAVQEAARLGVTVVGENRVQEAIQKQAEYTGTPIFWHLIGHLQRNKAAQAVRHFDLIESVDSERILEAIEKQAEKIDKVQDILLQFNIAEEPQKYGLKLSEYEDILAAVEAAPHIRLRGLMCMAPLVENPEEVRPVFRVAYNVFDDLRRRYGEEDIRYLSMGMSNDMEVAIEEGANLVRVGTAIFGSRE
>NZ_LT700188.1|WP_075938911.1|516848_517310_-|cell-division-protein-SepF
MGWRDSWNRMVDSVSGNHDDYEDEYMDDEEEYENDRVNYRTPSAAVPVQQSKAYRMIVVEPYTFGDSEKIADHLKSYRPVVINLEKTEDEVGRRLIDFVSGVTYALEGHIEQVSNAIFLAVPNNMTVDTENYTYTTTPNLGADVAPTWGSRQQ
>NZ_LT700188.1|WP_075938910.1|516048_516852_-|pyrroline-5-carboxylate-reductase
MTKLGIIGVGAMGGAILRGALAGKVIAADDVYVREHTSAKTQNVAERYGVNRADWSALAACDVVIIAVKPDKVKEVLAEFLAAKPRGVIVSIAAGTTLAKLREWSAPNLPLVRVMPNTPVDVAAGMISIAPAEGVADNNVAMVESIFAALGETVVVSEAELTAMMALAGAGPAYVYVIMDALADAGVRIGLPRKLAIKAAAQTLFGAAKMQLTSNTHPAILRDQVTSPGGTTIAGIQAMERSGLRSALIEGVVACYERDRELAQTHE
>NZ_LT700188.1|WP_075938909.1|515270_516056_-|RNA-binding-protein
MNEREKISRYFSGSGNGELANRLLDLADQVRTRRPLAVSDFVSPYAGQIATTIRAHFPGLEVEENGGYHGAERIKIAFFRPEFAGKIDWNLSAVEARWDPRFRLLGHRDVLGALMGLGLEREVFGDVLMQSTCAQVVVDRTIVPYLLQNWQKIAMVNVTPREIPLTELVPKIEKVKEVRTTVASLRLDAIGAAGYGMSRTKMVAAISAEKVQVNWQRAKGPAQIVAQGDVISVRGRGRLVVAEITGTSRKGRTGLRLERYQ
>NZ_LT700188.1|WP_075938908.1|514644_515256_-|DivIVA-domain-containing-protein
MLTPMDIHNKTFSKGLRGYAQEEVEQFLEEVVNDYEKIYREHREMEEETDMLRTKLKNYETMETTMTSTLMMAQETAENVKVNARKEAELIIAKAETEKEQMLRDTADSLRSAQEQYNQIMADIGVFRAKLRSLLESQLELVDTMVADPSQAMANYEAVSEVEENNDEELFTVTDAVEEEPEVVQETETEALDSTAGELDREA
>NZ_LT700188.1|WP_075938907.1|513770_514643_-|polyamine-aminopropyltransferase
METTQTAWVTEEQSPFVKLSLAAREILYEDQSEFQHIVVADSMQFGRMLILDGVFQTSVVDEWVYSEMITHVPLCLHPDPRRILIVGGGDGGTAREVLRHATVESVEMVEIDPAVIAVAKKYLPEIASALLQDDPRLTVTVGDGIAKVQAAENEYDVIIVDCSDPIGPGEGLFTAEFYAACARALKADGIMVQQTESPFFHQRLIGDVQQAVAKSFPVTRLYTAPVPLYPSGYHSFTLGAQTRDPLAAEWRTPNLSNCRYYNTEVGKAAFVLPEFVRRLTTGGRTADDRF
>NZ_LT700188.1|WP_083631525.1|512015_513233_-|hypothetical-protein
MTEKWPRTIVSLVGGMTMILVGFVTQEMAITRFIDFNTLGLLIGMMMIVAVVKKTGMFEAFAIWAVKLTKGRSLLLMLMFAFLTAISAAFLDVVTAVLLIAPITISLTKFLRLNAYPFLIMEILAANIGGTGTMVGDPPNVMIGSAVGLTFMDFVTNTGPVAVFVLLLCVPSLLLIFHKELKHEPFEKSLLDKLDPKKQIADWRLFHISLTVLVLTVFGFAIHNLIGFETATIALTGAIAMMVFTGETPEEALSGVDWSTIFFFIGLFVLVGGIEATGVIGWVAKWAVEQTQGDIEMTSSLILWISAIASAFVDNIPFTATMIPIIKEMENVMGLDPNVLWWSLSIGACYGGNGTIIGSSPGVIIAALAAQNGYDMSFKKYFIVGFPMMLFTVFVGQVYIWLRYF
>NZ_LT700188.1|WP_075939635.1|505777_506446_-|DUF1638-domain-containing-protein
MAGTIIFACPTLQKELIHALKEAESSAVLYLLPDELHKSPAYLKSYLQEKIDSVLYADRVIICPSGCGGGTIGLRATHTELVLPRTRDCLDILLSGENLKEIKRPKHGVFFTESWAEYSKRSSIDVDKIIRSRGEEEGKAFLRKLYKGFEHLYIIDTGVYEIEPVREYLEKLRKILDGQIDIVPGKYGILRKIADDDFDEDFLILKKGETVPESYFTLDRDL
>NZ_LT700188.1|WP_075938905.1|504659_505379_-|DUF4198-domain-containing-protein
MKKAVGLALCAGLLAGAFGVADVSAHGVFVANSLDQRVLVLGEGPGNNVYDPACVQMVEGYDKNFQPTAVDVVRYSDHISFANTENLGVTTTFFDYGYFTKTKDGKTVNAPFSEVPNAVKTTHAVKYNVNYWDPEVKPGYIYNVPIQIVPSVNPLTLRKGDTFEIRAYKDGEPMADAPLIKDVINDLTNESKTDANGRATVTVAANGLNVLGIEIAYPTDDPNTQVKYFSSLSFIIEPE
>NZ_LT700188.1|WP_075938914.1|519531_519972_-|peptide-methionine-(R)-S-oxide-reductase
MKEKPSQLAHLTDMQYRVTQENATEPPFQNEFWDQEAPGLYVDVVTGEPLFSSEDKFDAGCGWPSFDRTLDDAPVSEYRDTSIPFMPRTEVRSNGGHLGHVFPDGPTETGLRYCINSAALRFISYEQLDKEGYGAYKKIFTKSFDK
>NZ_LT700188.1|WP_075938915.1|519968_520406_-|cupin-domain-containing-protein
MIRKHKNYRWDDVSQLVYKEDNSPFRSVTRQVLFDGAEDIPCQWRYFEVASGGYSTLEHHQHTHWVMIFRGKGTALLGDEVQAVSYGDLITIPAWQWHQFRANRGEALGFLCLVNQERDKVTLPTDAELTKMKENPAIRDFLEEP
>NZ_LT700188.1|WP_075939636.1|520494_521259_+|sulfite-exporter-TauE/SafE-family-protein
MGLEFLLYLLLGALVAAFGTLIGAGGGIIFVPLFLFMFPWSPAMITGTSLAIVFCNAASGTVAYMRQKRIHYQAAVLFAVCTLPGAVLGAILTDYFSGALFKLTFGSFLTLLSLFILWQNRRKKATRVEHTDTHFAYSKPLGCAISFVVGFISSIFGIGGGVIHVPAMIYLLGFPTHIATATSHFVLAVSALFGVATHGVAGHIHWPAAIVFGLGSIVGAQIGARLAKRVQGPIIINLLALALLLLGLRLVLLV
>NZ_LT700188.1|WP_075938916.1|521292_522663_+|aminopeptidase
METYSRKTPVWNRFNKTQQKECHKYAEEYKKFLDAARTERLANKEIIRQAKAAGYRPLSSFSELHAGDKVYLDHKGKAVIMAVIGRDDMRQGLKLIGSHIDSPRLDLKANPLDEKDGLVFLRTHYYGGIKKYQWVCMPLALVGVIAKTDGSLVNVEMGLDSKDPVLYITDILPHLGQTQAQKKLNEAITGEMLLPVIGGHGEGKKSAKEMVLKIFGDKYGITEEDFASAELEVIPAQGARDVGIDRAFVMAHGQDDRVCSYGNLAAILAAKPSTKTQVALFTDKEEIGSYGNTGVNSSYVTDFIMDLLELQGDGSHRALRDTLRHTEILSADVTASFDPTFADVMEKNNSSLTGFGIVLTKYTGARGKSGSNDANAEFLGKVRGIFNENNVPWQIGELGKVDQGGGGTIALYLAAWGCEVVDCGVTMLSMHAPLELVEKTDAYCAYLAYKAFFESN
>NZ_LT700188.1|WP_075938917.1|522708_523647_-|cysteine-synthase-A
MKIATSILDLVGKTPLVELKKWSAKRNLAAQIVVKLERQNPAGSVKDRVALAMIEEAENDGSLVPGMTIVEPTSGNTGVGLAFVGAVKGYRVILVMPETMSIERRQLAQAYGAEIVLTPGAQGMQGTVDKANELKKELGNVFIPQQFENAANPAMHEATTAREIWEDTDGHVGAFVAGVGTGGTVTGVGRFLKEKDADVKIFAVEPSTSPLLTEGKAGSHKIQGIGANFIPKVLDQAVYDEVLTVTNEDAIAATQALAREEGILVGVSSGAAVAAATALAQRPEFAGKRIVALLPDTGERYLSLGIFGAADK
>NZ_LT700188.1|WP_075938918.1|523692_524313_-|hypothetical-protein
MSIYSLQKPDQLDFEVNGRIWYGYSQDWYQDEWHRRAGCGPTTATYLAAYCLHRDGIWKDLQTTNAVLTQMNRIWDYVTPRQGGLYKTRWLRDGLEMFFREAGMQNYHARMLAVSVVSRFRPSSEEVLNFIKAGLDCDSPVAFLNRHRGNQETIDSWHWAPIVRLDTDQSPAIADVYDEGIKKSFAPAEWARETLLGGGFVYLQKT
>NZ_LT700188.1|WP_075938919.1|524325_524757_-|peptidylprolyl-isomerase
MKAIITLENKAEITIELFPKEAPGTVKNFAKLASEGFYDGLIFHRVIPGFVAQTGCPNGNGTGGPGYTIPCETENNPHKHTRGAVSMAHRGKDTGGSQFFICFEPQPHLNGVHTVFGQVTDGMDTVDSILQGDRMDSIRIVEE
>NZ_LT700188.1|WP_083631526.1|524753_525467_-|tRNA-threonylcarbamoyladenosine-dehydratase
MDEFTQRTSYLLGTDGVDRLARAAVAVFGIGGVGSYAVEALARAGIGRLVLIDPDRVTVSNRNRQLPALVSTLGKSKAQVMAERVADINPACQVEVREEFYLPREKSYLATLHVDYVIDAIDTVTAKVGLAREAQALHIPIVAAMGLGNKLHPEQIEVADIYATSVCRLARVMRRELKQAGVAKLTCVYSKEKPIAPQYPEGSEQVPGSVSFVPPVGGMILAGLVIRAIAQKEEELL
>NZ_LT700188.1|WP_075938920.1|525466_525838_-|lactoylglutathione-lyase
MSFRFDHNNLNVLDLGKSLAFYEEALGLTEVRRKIADDDSFIIVYLGDHQTDHKLELTWLRDRKEPYNLGDNEFHLAFVTEDYEAAHAKHKAMGCICYENPQMGIYFIEDPDHYWLEIVPAKD
>NZ_LT700188.1|WP_083631527.1|525917_528986_-|SMC-family-ATPase
MAGGGVMRPLRLMMQAFGPYVAAQTIDFTRLGERQFFLVHGPTGAGKTTIFDAICFALYGKTSSERDARNMRSAYAPTSLPTRVELDFALGDTCYRVVREPAQRLSKQRGTGTTERPAKVEFVKIAGDGKELESMGDRNVQGKILDLICFDVDQFRQVVLLPQGNFRQLLLASSAEREQILAKLFATEIAARVASLLKERAQALASSFEEAKRDRERDLGAENVTTEEELQSAIQITQAEWNEAKDAELVLAKARQEAQQSAQAAQTWQDLKSKEKIALAVQKKLADESEMMQEKAAELERWQKATTMADSMQALTDEQTKGSRYRQQQSEWEPELKQLQEETLYWAKEEEFLDAERSAQSEYKLEQERLTRVIGWFDEVAQLTRQEEENQKKHAAAEERQKAAQAEAERIAKAITDLSEQGNALRELAEKEPIWEEKLASHKRRQKEYQAYRKRQQDHDAVRGDIETLKNTLALQQTALQNVVKKREHLADLREKNWAAWLGAELTAGTPCPVCGSLHHPQPAVTDEEMPDEATWQDAQEEEKLAQEKLAATQQLLSQLTERESLLAQELNAADALLASLTDTQLIEQETELQTKHQEAMSAQAEFERVKVQLTAQQEQEKKANETLQKINEELAKIESAGTVVTTKLEEAQRQIPPQFTNAESVKAQVVQLKEKIENYERREKAFSEKAKEVQKKEQDLRQQYEEVTRRLEECRHNYKTKRDALLERAKASGFTDMTLLAAAIAQGPSINERQQEIQKYQADCIANKTRLEEIKKELDGMAAPDLAKVMAAVSQAEKEHKEAVERMTMLGIKVKRLAAAAQKMKEYAQIFAKLDQEQAVVGRLSELANGSSVTGEQGRLSFQRYVLQTLLDDVVMAANVRLEKMSHRRYQLVRAQAATDQRRAAGLDLEVNDFWTGDRRPANTLSGGETFQASLALALGLADTAQAYAGGLRLDTVFVDEGFGTLDADALNEAIRILTDLREGGRLVGIISHVEELRQRIDTRLEIEKTETGSRAHWVLG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_LT700188_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT700188_3

994889-995040

Orphan

Consensus_repeat	Method
AGCCAAAGCTACAAACGAAAAGGACGGGGGGCTGCCCGTCCTTTTCCCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT700188_3

>merge|NZ_LT700188|3|994889-995040|CRISPRCasFinder
AGCCAAAGCTACAAACGAAAAGGACGGGGGGCTGCCCGTCCTTTTCCCTTACTTGACTAAAAAAGAAACGTGTTCTACAATGAAATCAGGCGAAACGCATATAGCCAAAACTACAAACGAAAAGGACGGGGGGCTGCCCGTCCTTTTCCCTT

>NZ_LT700188|3|3|994889-995040|CRISPRCasFinder
AGCCAAAGCTACAAACGAAAAGGACGGGGGGCTGCCCGTCCTTTTCCCTT	ACTTGACTAAAAAAGAAACGTGTTCTACAATGAAATCAGGCGAAACGCATAT
AGCCAAAACTACAAACGAAAAGGACGGGGGGCTGCCCGTCCTTTTCCCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT700188.1\|WP_075939296.1\|986785_987178_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
NZ_LT700188.1\|WP_075939298.1\|988080_989058_+\|bile-acid:sodium-symporter-family-protein	unknown	unknown	gnl\|CDD\|223462
NZ_LT700188.1\|WP_075939295.1\|985974_986385_+\|OmpH-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|377167
NZ_LT700188.1\|WP_075939301.1\|990895_993346_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_LT700188.1\|WP_120718271.1\|999017_1000082_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377158
NZ_LT700188.1\|WP_075939300.1\|989512_990670_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340897
NZ_LT700188.1\|WP_075939308.1\|998056_998287_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_LT700188.1\|WP_075939311.1\|1000253_1000823_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379534
NZ_LT700188.1\|WP_075939305.1\|995340_995757_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT700188.1\|WP_075939302.1\|993394_993679_-\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	unknown
NZ_LT700188.1\|WP_075939312.1\|1001035_1002955_+\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|225127
NZ_LT700188.1\|WP_024048739.1\|997260_997551_+\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|275385
NZ_LT700188.1\|WP_075939299.1\|989105_989492_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT700188.1\|WP_075939303.1\|994063_994660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT700188.1\|WP_083631601.1\|996073_997048_-\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NZ_LT700188.1\|WP_075939297.1\|987232_988084_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|376824
NZ_LT700188.1\|WP_120718257.1\|994589_994838_+\|DUF4116-domain-containing-protein	unknown	unknown	gnl\|CDD\|372614
NZ_LT700188.1\|WP_075939309.1\|998357_998546_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT700188.1\|WP_075939313.1\|1003036_1003294_-\|DUF951-domain-containing-protein	unknown	unknown	gnl\|CDD\|377606
NZ_LT700188.1\|WP_075939307.1\|997566_998031_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|366099

Protein	Function_ID	Function_description	E-value
NZ_LT700188.1\|WP_075939296.1\|986785_987178_+\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	4.92461e-77
NZ_LT700188.1\|WP_075939297.1\|987232_988084_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	1.14779e-168
NZ_LT700188.1\|WP_075939301.1\|990895_993346_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_LT700188.1\|WP_120718271.1\|999017_1000082_+\|hypothetical-protein	gnl\|CDD\|377158	pfam03895, YadA_anchor, YadA-like membrane anchor domain. This region represents the C-terminal 120 amino acids of a family of surface-exposed bacterial proteins. YadA, an adhesin from Yersinia, was the first member of this family to be characterized. UspA2 from Moraxella was second. The Eib immunoglobulin-binding proteins from E. coli were third, followed by the DsrA proteins of Haemophilus ducreyi and others. These proteins are homologous at their C-terminal and have predicted signal sequences, but they diverge elsewhere. The C-terminal 9 amino acids, consisting of alternating hydrophobic amino acids ending in F or W, comprise a targeting motif for the outer membrane of the Gram negative cell envelope. This region is important for oligomerization.	5.28864e-07
NZ_LT700188.1\|WP_075939300.1\|989512_990670_-\|MFS-transporter	gnl\|CDD\|340897	cd17339, MFS_NIMT_CynX_like, 2-nitroimidazole and cyanate transporters and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Escherichia coli 2-nitroimidazole transporter (NIMT) and cyanate transport protein CynX, and similar proteins. NIMT, also called YeaN, confers resistance to 2-nitroimidazole, the antibacterial and antifungal antibiotic, by mediating the active efflux of this compound. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The NIMT/CynX-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.0032e-79
NZ_LT700188.1\|WP_075939312.1\|1001035_1002955_+\|cation-translocating-P-type-ATPase	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_LT700188.1\|WP_075939311.1\|1000253_1000823_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379534	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region. This domain is a tetracycline repressor, domain 2, or C-terminus.	1.6222e-16
NZ_LT700188.1\|WP_075939298.1\|988080_989058_+\|bile-acid:sodium-symporter-family-protein	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	2.4979e-85
NZ_LT700188.1\|WP_024048739.1\|997260_997551_+\|30S-ribosomal-protein-S6	gnl\|CDD\|275385	cd00473, bS6, Bacterial ribosomal protein S6. bS6 is one of the components of the small subunit of the prokaryotic ribosome, a ribonucleoprotein organelle that decodes the genetic information in messenger RNA and forms peptide bonds to synthesize the corresponding polypeptides. Ribosomes consist of a large and a small subunit, which assemble during the initiation stage of protein synthesis. Prokaryotic ribosomes consist of three molecules of RNA and more than 50 proteins. The small subunits of bacterial and eukaryotic ribosomes have the same overall shapes (with structural elements described as head, body, platform, beak and shoulder). The bacterial ribosomal protein S6 is important for the assembly of the central domain of the small subunit via heterodimerization with ribosomal protein S18.	3.55733e-36
NZ_LT700188.1\|WP_075939308.1\|998056_998287_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	6.40731e-35
NZ_LT700188.1\|WP_083631601.1\|996073_997048_-\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.22239e-123
NZ_LT700188.1\|WP_075939295.1\|985974_986385_+\|OmpH-family-outer-membrane-protein	gnl\|CDD\|377167	pfam03938, OmpH, Outer membrane protein (OmpH-like). This family includes outer membrane proteins such as OmpH among others. Skp (OmpH) has been characterized as a molecular chaperone that interacts with unfolded proteins as they emerge in the periplasm from the Sec translocation machinery.	3.55049e-08
NZ_LT700188.1\|WP_120718257.1\|994589_994838_+\|DUF4116-domain-containing-protein	gnl\|CDD\|372614	pfam13475, DUF4116, Domain of unknown function (DUF4116).	5.89799e-05
NZ_LT700188.1\|WP_075939313.1\|1003036_1003294_-\|DUF951-domain-containing-protein	gnl\|CDD\|377606	pfam06107, DUF951, Bacterial protein of unknown function (DUF951). This family consists of several short hypothetical bacterial proteins of unknown function. Structural modelling suggests this domain may bind nucleic acids.	1.42959e-31
NZ_LT700188.1\|WP_075939307.1\|997566_998031_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|366099	pfam00436, SSB, Single-strand binding protein family. This family includes single stranded binding proteins and also the primosomal replication protein N (PriB). PriB forms a complex with PriA, PriC and ssDNA.	4.23774e-44

>NZ_LT700188.1|WP_120718257.1|994589_994838_+|DUF4116-domain-containing-protein
MFQNLCAGTGTFVKKTVQSENYRDFVYFIPSSVWGDKKKLLRWISANGLLIEFAAKELQRDPEVIKAAVAQNPDAMLLLAKK
>NZ_LT700188.1|WP_075939303.1|994063_994660_+|hypothetical-protein
MKKVSSAFYMLEPKFFDEFGLLGNFGGKNKIKKIINTPHYIFFVEQKYWAVPVKKLDAKYYGARRTRSRIGRLYIDVFFLGSKAYLQMDEMFPIHPIFIKAPFYENKETQSGIIRLDIETEDQILKAYKDQRILDIQNIIPAAYDLTYLLKAYDETNTNQKLLLEMIHQNASKIGYISKSLRGDWDFCQENRAERKLP
>NZ_LT700188.1|WP_075939302.1|993394_993679_-|RepB-family-plasmid-replication-initiator-protein
MFKIDHEVETLIQKGGKIVLKYHNDMNVFSFGGFTARELNLFFLICGLMKEREYSLVLTFDEIKKIIDPTSFANNKDLIDCIAETNRKFFNLKR
>NZ_LT700188.1|WP_075939301.1|990895_993346_+|DNA-gyrase-subunit-A
MATEWQHGAIVPVDIEEQMRTSYIDYAMSVIVMRALPDVRDGLKPVHRRILYAMHEGGLTANKPYRKSARVVGDVLGKYHPHGDSSVYDATVRLAQDFSTRYPLVDGHGNFGSVDGDSPAAMRYTEVRMAKIAQEMLEDLEKNTVDFMPNYDESLQEPVVLPSKIPNLLVNGSYGIAVGMATNIPPHNLGEVVDGLCLLIDDPNTPIETLMKHIKGPDFPTGGLIQGREGIKKAYTTGRGAIKVRARVEIEEMAKGKNRIVVTEIPYQVNKARVVETIAKLSRDKILDGITALRDESDRNGMRIVIELRSDIDPQIMLNNLYKHTQLQETFGVIMLALVDGHPRVLTLKQMLEYYLLHQKEVITRRSQYELDRARAREHIVEGLLIALDHIDAIIKTIRASETDEIAKNALMENFGLSEKQSLAILDMRLRRLTGLEREKLEAEYQDLKERIEYLLGLLGDEAKVMQVVKEELLDVKQRFTDERRSEIVRDESGLDDLDLIPDEPMIITLTQQGYIKRMHANTYRTQRKGGAGITGIKTKDDDFVTKVLTTSTHNTLLFFTTAGRVYKLVANDIPKASTRTARGTHLVNCIPALEKDEQVTEIYDISSFANYEYLLMVTRQGFVKKTLLSEYTNVRQSGLIAINLREGDELIKVVTTTGEDDIIIGTKTGMAIVFSEADVNPTGRASLGVIGVRFKQGSQDEVVGADVLTSTDEVLTLSSDAYAKRNKATAYSVQQRGGQGARNFKKGSTVVGLLTVKGNEEMLVITESGIVIRVPVDSISLKKGKNTIGVKVQRLDDTDRIASVALAPMEETEED
>NZ_LT700188.1|WP_075939300.1|989512_990670_-|MFS-transporter
MNLQHGVVLGWSTLHLRASFLMLTPLLPVLQAYFDLSHATVGMLTTLPLLVFAAVSPFVGNWIPRCGMTRLFGGAMALLAAGAVLRSYAGITGLFAGTVLLSAGVAIGNVLLPTLTKAWYPEHTALATGIFVVAMNGMNAVSNAIVIPLAAHYGWQLVCASWAATAFVGALLWFSLPNQRPTARAHKELSIRAVFSHYAAWWVALFMGLQSLVYFSLVTWLPYWIVAKGYDMTLGGYYSFLFQLVSLPASLLTPLLAQGRYRRQYGAAAGLMYLTGFYFVFAAQTSLWLTAAIIWIALAAGATFSLCMLAFAVRAANPLIASRLSGVGQAIAYLLAAIGPVSVGALYGMYGSWPPLLLYFIGACLLLALCGYHALHFTKVGEDAR
>NZ_LT700188.1|WP_075939299.1|989105_989492_-|hypothetical-protein
MATQSDSQNGFGRTTYVGALVASVVLGAMTLMDLIPTSFPVNLIGNIGVALLFFAVGMRLSRVGRPAEYVYIMLVPILSLAYAIFLIWLPDRPQPQNKKFHVLHIAAAFAIYIGIARLIQIFVYPMFI
>NZ_LT700188.1|WP_075939298.1|988080_989058_+|bile-acid:sodium-symporter-family-protein
MKTIVKITGALTRYIGAIIIIFTAWAFLQPELFGWAVQYTAWFLGAAMFGMGLSIHAEDFAVVFARPREVLLGVALQYTVMPVAAWALAAGLGLPTDLALGVILVGCCPGGTASNVITYIAGGDVALSVGMTIVSTLLAPLATPLLVFGLAGAWVNVSLWAMIISVVKVVLIPVLLGLLLHTLFRSKIKPVQDVFPLVSVAAIVFIIAGIVAVNREKVLTSGLIVIGLVAIHNMVGLGLGYLAARQAKASYAKTTAIAIEVGMQNSGLAIALATANFAANPLATLPGAIFSVWHNISGSLFASYRRREEPDTAKDSVEQLPWETE
>NZ_LT700188.1|WP_075939297.1|987232_988084_+|pantoate--beta-alanine-ligase
MQICTTVAEVRALVDAWHKEGKTVGLVPTMGFLHEGHESLIQKAVAENDCVVVSDFVNPTQFGPQEDLEAYPRDFAQDKARCEKIGAAAIFHPTPEEMYHDPATYVNIERLSSTLCGQSRPIHFRGVCTVVSKLFNIVRPERAYFGEKDAQQLAIIRKMVTDLNFPVTIVGCPIVREADGLAKSSRNTYLSAAERRAALCLSQAVKKGQQTIAPKMTADDVLQPMREILDNEPLARVDYLEMVDAQTMQPADRVDRAVLVAMAVYIGKTRLIDNFSFDPAGAR
>NZ_LT700188.1|WP_075939296.1|986785_987178_+|aspartate-1-decarboxylase
MTISMLQGKIHRATVTQAELDYVGSITVDSELLEAAGIQEYQEVQIVDVNNGQRFGTYTIAGEAGSGVICLNGAAARCVSVGDKVIIMAYADLTPEEASQHRPTVVFVEEDNRIHRVTDYEQHGRLSDQA
>NZ_LT700188.1|WP_075939295.1|985974_986385_+|OmpH-family-outer-membrane-protein
MKQKMIALALTGVFACGTMLTAAAAGVGYVNQQVLMQAHPRMMKAQLTLKAETQKQQQKFDNEVVKLKDDNAKRDLYMKLQRELSEKEQELIGPIMRDVQNAIEKTRQEKGLDAILDRDAVVAGGQDVTVDVQKKF
>NZ_LT700188.1|WP_075939305.1|995340_995757_-|hypothetical-protein
MIKKLIGFLTVLCMAFFIAGCSSTPDVSGTYTAYNKNINGVSSIIILEKKNNDNLYECSGFYVDENNRKYKKSSTHWVSKFNPDIKQMVADPNNNPLNHRPLFFNEDLSSVGFDKMHSDTFKKVSKSEAQKYDKFVEE
>NZ_LT700188.1|WP_083631601.1|996073_997048_-|magnesium-transporter-CorA-family-protein
MKGCGTVLIAYKHDEDQILQEVVPEAAEKGSWLNVVNPTEEELVRLAKITPIPIEDFRSALDPEERSHVELEDDYIFVVINTPVVRETEDSYDALPLGIFITEKHFITVCLEESAVLAPFHGNTYNTFRTYKKTRFLFQLMNRTATLFLQALGKINKRTDVIEARLRETAENKEFFQLLELSKSLTYFTSALKANGVVMERLLRLRNNVQPRPLLKMYEEDEDLLEDVIIENKQAIEMVQMYSQNSNSMMDAFASIISNNLSQVMKLLTSVTILLAVPTAVFSLWGINTGVPWEGQMIGFWGVLGIAFVSTVVALFILWRRHYL
>NZ_LT700188.1|WP_024048739.1|997260_997551_+|30S-ribosomal-protein-S6
MNKNYEVMFIINAGLDEEAADAIVKRVEDLITKNGGTVNNIDRMGKRRLAYEVQKQTDGNYVLVEFAIDPAQIKEIDRVIKINEKIIRHLIVKQDK
>NZ_LT700188.1|WP_075939307.1|997566_998031_+|single-stranded-DNA-binding-protein
MNSVQIIGNLTRDPEVRYTKTGKPVASFTVAVNRSWVSVQGEKRESTDFIPVVAWGKLAELVGNRLKKGTRTFVEGRFQTRSYETQEGEKRYITEVVANLVAPNVDYDKQPSAAPEPRADYSQFGAQPQAGGNFGNQPSGQVFGGNGNDDDIPF
>NZ_LT700188.1|WP_075939308.1|998056_998287_+|30S-ribosomal-protein-S18
MRRDRQRRPRRKVCAICADKIQHVDYKDINLLRRFTSERGKILPRRVTGACAKHQRKVNLAIKQARAIALLPFSVD
>NZ_LT700188.1|WP_075939309.1|998357_998546_-|hypothetical-protein
MSHLQAIFFIIHFGDSSQRPFFHHKSALRYFFVIDLAISIARHAIVFPTAVATHDRIALAKK
>NZ_LT700188.1|WP_120718271.1|999017_1000082_+|hypothetical-protein
MGPKYATKLTGAYVAAITGITDKLVTEFDIKGEGDTPEAARARVTELIKAISTGNDISKNENEKKLVEAAKAGYYARRMETELMGAFPGVVNTVNKTIDQVNTNTKAIADNTKALDTKVDKDAQAKVDAAQDNKIAANTAALDTKVDKDAQAKVDAAQDKRITTNTGAIAANTKALDTKVDKTAQAKVDAAQDKGIAANKAAIADMNTSFNQRFGELDQRVDKVGALTGALAGLKPMQYDPIAPTQIMAAASTYEGEQGFALGIAHYTKEDLMLHAGVAYDGDDDFMGNIGVTMKVGSSADREVIPERYQAGPISSVYVMQDEITDLQARNAALTAQNERILAELQALRQHVGM
>NZ_LT700188.1|WP_075939311.1|1000253_1000823_-|TetR/AcrR-family-transcriptional-regulator
MDRRQIKTRNAIFQAFTELLARRRYAQITVQQIIDAANIGRSTFYSHFPTKEALMEALLTELFGHVFAGVGVHCPIPEFTPQGNGYRAYTTHILYHISNQREAFMRLLRSDSRDIFLRYLKEHLKLQLGEYWLNHEEGERPAVPADFLRNHFACTFVETIHWWIESDMRQTPEEIAGYFTAVMDPLLGR
>NZ_LT700188.1|WP_075939312.1|1001035_1002955_+|cation-translocating-P-type-ATPase
MWDRWWEWALRPRMMVLMTVLLLVSAYGHLTNNAFLQMYDPGWGVLLLAGIPLLFGGIEYLVKDKELTSWLLVGIALVACVALGEVFAATEVAWIMAFGEWLEGRTVQRARRGLEQILAQTPAQGRRINDAGETEMVAAEEIRVGDRLSVHPGETIPADGVVLTGATAVDEAMLTGESLPVDKRDGSEVFGGTVNGFGAIEMRATKVGADASMQRLVRLVREAENEQAPVQRTVDRWVRYLVPTAIALSLIVFALNFWWGTPLTETIYRTVTVLIVFCPCALALSTPTAIVAAIGQATKAGVIIKSGAALEVMGRIDTLALDKTGTITTGALAVTDVLPLREDVSEQELLALAAAAEEQSEHPLGKAILQKAREVGVTLPEHTDFVMTGGRGVSVRLTDGSVLYAGSERYLAQEGIDIAPTVEATLNELRSNGKIAVLVAQADQLIGVVAFADTVRAQMPAVTAALQRARLTPVMLTGDNAQTAQFVGTTVGIDEVHARLLPEDKVAYIAAQQKAGRRVAMVGDGVNDAAALKRADVGIAIGGTAGDMAIEAADIILPGSDMTRLPYLARLSQKTLRTIHINLAIALSLNILGVILSLFGWLTPVTGAIVHNAGSIIVSLHAIWLYETKILTGVQEADA
>NZ_LT700188.1|WP_075939313.1|1003036_1003294_-|DUF951-domain-containing-protein
MAYLKVDIGDIVTMKKPHPCGSKEWEVLRIGADFRIRCRGCGHTVMIARPKFMKAVRGVVTKVADRDDFAPPTDHSFPTDDAAQN

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT700188_1	1.11\|165052\|29\|NZ_LT700188\|CRISPRCasFinder	165052-165080	29	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	83410-83438	5	0.828
NZ_LT700188_1	1.20\|165052\|30\|NZ_LT700188\|CRT,PILER-CR	165052-165081	30	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	83410-83439	5	0.833
NZ_LT700188_1	1.10\|164986\|29\|NZ_LT700188\|CRISPRCasFinder	164986-165014	29	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	75503-75531	6	0.793
NZ_LT700188_1	1.10\|164986\|29\|NZ_LT700188\|CRISPRCasFinder	164986-165014	29	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	32353-32381	7	0.759
NZ_LT700188_1	1.19\|164986\|30\|NZ_LT700188\|CRT,PILER-CR	164986-165015	30	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	75503-75532	7	0.767
NZ_LT700188_1	1.10\|164986\|29\|NZ_LT700188\|CRISPRCasFinder	164986-165014	29	MG189906	Stenotrophomonas phage vB_SmaS_DLP_5, complete genome	32296-32324	8	0.724
NZ_LT700188_1	1.19\|164986\|30\|NZ_LT700188\|CRT,PILER-CR	164986-165015	30	MG189906	Stenotrophomonas phage vB_SmaS_DLP_5, complete genome	32295-32324	8	0.733
NZ_LT700188_1	1.19\|164986\|30\|NZ_LT700188\|CRT,PILER-CR	164986-165015	30	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	32353-32382	8	0.733
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	162854-162887	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	162649-162682	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1397937-1397970	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	156812-156845	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	156699-156732	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	422798-422831	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	501153-501186	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	407812-407845	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	36641-36674	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	945493-945526	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	310011-310044	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	159418-159451	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1584410-1584443	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1543602-1543635	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1649343-1649376	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1148934-1148967	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1268754-1268787	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	807131-807164	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	859118-859151	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	111764-111797	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1475537-1475570	11	0.676
NZ_LT700188_2	2.1\|519275\|34\|NZ_LT700188\|CRISPRCasFinder	519275-519308	34	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1584425-1584458	11	0.676

1. spacer 1.11|165052|29|NZ_LT700188|CRISPRCasFinder matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 5, identity: 0.828

cttccagccgtgctgtttggcaagcatga	CRISPR spacer
cttccagccattctgtttggcaaggaagt	Protospacer
*********.* ************ * *

2. spacer 1.20|165052|30|NZ_LT700188|CRT,PILER-CR matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 5, identity: 0.833

cttccagccgtgctgtttggcaagcatgaa	CRISPR spacer
cttccagccattctgtttggcaaggaagta	Protospacer
*********.* ************ * * *

3. spacer 1.10|164986|29|NZ_LT700188|CRISPRCasFinder matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 6, identity: 0.793

agttgcggtcaccggagcgaccaccgagg	CRISPR spacer
ggaggcggtcaccggagcggccaccgctg	Protospacer
.*  ***************.******  *

4. spacer 1.10|164986|29|NZ_LT700188|CRISPRCasFinder matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.759

agttgcggtcaccggagcgaccaccgagg	CRISPR spacer
cgcctcggtgaccggcgcgaccaccgaga	Protospacer
 *.. **** ***** ************.

5. spacer 1.19|164986|30|NZ_LT700188|CRT,PILER-CR matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 7, identity: 0.767

agttgcggtcaccggagcgaccaccgaggt	CRISPR spacer
ggaggcggtcaccggagcggccaccgctgc	Protospacer
.*  ***************.******  *.

6. spacer 1.10|164986|29|NZ_LT700188|CRISPRCasFinder matches to MG189906 (Stenotrophomonas phage vB_SmaS_DLP_5, complete genome) position: , mismatch: 8, identity: 0.724

agttgcggtcaccggagcgaccaccgagg	CRISPR spacer
catcagggtcaccggagcggccaccgact	Protospacer
 .*.. *************.*******

7. spacer 1.19|164986|30|NZ_LT700188|CRT,PILER-CR matches to MG189906 (Stenotrophomonas phage vB_SmaS_DLP_5, complete genome) position: , mismatch: 8, identity: 0.733

agttgcggtcaccggagcgaccaccgaggt	CRISPR spacer
catcagggtcaccggagcggccaccgactt	Protospacer
 .*.. *************.*******  *

8. spacer 1.19|164986|30|NZ_LT700188|CRT,PILER-CR matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

agttgcggtcaccggagcgaccaccgaggt	CRISPR spacer
cgcctcggtgaccggcgcgaccaccgagag	Protospacer
 *.. **** ***** ************.

9. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

10. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

11. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

12. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

13. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

14. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

15. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

16. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

17. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

18. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

19. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

20. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

21. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

22. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

23. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

24. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

25. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

26. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

27. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

28. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

29. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

30. spacer 2.1|519275|34|NZ_LT700188|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.676

aacaaaaaaggatggcacccagggacggaaaact	CRISPR spacer
gggcggaaaggatggcaccgacggacggaaacac	Protospacer
..  ..************* * *********  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

468208 : 475391

Tupanvirus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075939632.1\|468208_469426_-	U32 family peptidase	Q6DW11	Phage_TP	1.5e-56	37.9
WP_120718250.1\|469444_470155_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	3.6e-10	27.7
WP_075938876.1\|470027_471017_-	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_075938877.1\|471092_472139_-	radical SAM protein	A0A2K9L6U3	Tupanvirus	2.8e-11	29.2
WP_075938878.1\|472154_472883_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	5.8e-24	35.1
WP_075938879.1\|472882_474130_-	beta-ketoacyl-[acyl-carrier-protein] synthase II	NA	NA	NA	NA
WP_024049256.1\|474341_474578_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	1.2e-07	43.1
WP_075938880.1\|474653_475391_-	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	2.2e-15	29.7

DBSCAN-SWA_2

876569 : 888688

Prochlorococcus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075939211.1\|876569_878135_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.3e-72	50.3
WP_075939212.1\|878137_878758_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	2.0e-20	36.5
WP_075939213.1\|878759_879806_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	5.5e-68	45.6
WP_075939214.1\|879796_881203_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.5e-57	35.7
WP_075939215.1\|881202_881919_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	1.2e-42	41.3
WP_075939216.1\|881970_882453_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.6e-25	48.1
WP_075939217.1\|882462_883836_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.1e-51	31.9
WP_075939671.1\|883985_884516_-	TIGR00730 family Rossman fold protein	A0A1V0S9E9	Catovirus	2.2e-12	28.3
WP_075939672.1\|884539_884923_-	hypothetical protein	NA	NA	NA	NA
WP_075939218.1\|885204_885831_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_075939219.1\|885880_888688_-\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	7.3e-91	27.4

DBSCAN-SWA_3

1092623 : 1100010

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075939379.1\|1092623_1093415_-	thymidylate synthase	A0A0H3V0R8	Geobacillus_virus	2.9e-53	42.0
WP_075939686.1\|1093411_1095226_-	DNA helicase RecQ	K7YHB4	Megavirus	5.6e-76	35.8
WP_024047967.1\|1096022_1096703_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.0e-35	35.5
WP_075939380.1\|1096686_1098156_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	8.7e-27	29.3
WP_120718274.1\|1098295_1099135_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	1.7e-19	35.6
WP_075939382.1\|1099110_1100010_+	energy-coupling factor transporter ATPase	F2Y302	Organic_Lake_phycodnavirus	2.5e-16	29.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT700188

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection