CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT838273	Helicobacter pylori isolate HE93/10_v1 chromosome I	4 crisprs	cas14k,cas14j,cas2,DEDDh,csx1,cas3	0	0	1	0

1. NZ_LT838273

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT838273_1

• CRISPR_ID: NZ_LT838273_1
• CRISPR_location: 2904-2983
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT838273_1

Consensus_repeat	Method
GAGAACCCATTTATGCTCAAGTT	CRISPRCasFinder

spacers of NZ_LT838273_1

>1.1|2927|34|NZ_LT838273|CRISPRCasFinder
AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG

CRISPR arrays and Neighbor proteins around NZ_LT838273_1

CRISPR arrays

The CRISPR arrays of NZ_LT838273_1

>merge|NZ_LT838273|1|2904-2983|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTTAATAAAAAGAAAACAGGACAAGTAGCTAGCCCTGAAGAACCCATTTATGCTCAAGTT

>NZ_LT838273|1|1|2904-2983|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTT	AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG
AAGAACCCATTTATGCTCAAGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT838273.1|WP_089086793.1|9708_10530_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT838273.1|WP_089086794.1|10600_11038_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT838273.1|WP_089086789.1|4552_5320_-|glutamate-racemase	unknown	unknown	gnl|CDD|272885
NZ_LT838273.1|WP_089086788.1|4049_4424_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089086792.1|8746_9712_+|sialidase	unknown	unknown	unknown
NZ_LT838273.1|WP_089086790.1|7167_8037_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|223390
NZ_LT838273.1|WP_089086791.1|8050_8734_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl|CDD|129290
NZ_LT838273.1|WP_000715278.1|6940_7144_+|50S-ribosomal-protein-L31	unknown	unknown	gnl|CDD|376487
NZ_LT838273.1|WP_001029404.1|11514_12453_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	unknown	unknown	gnl|CDD|273113
NZ_LT838273.1|WP_001004721.1|5359_6676_-|transcription-termination-factor-Rho	unknown	unknown	gnl|CDD|236490

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT838273.1|WP_089086789.1|4552_5320_-|glutamate-racemase	gnl|CDD|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.05764e-126
NZ_LT838273.1|WP_089086788.1|4049_4424_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086790.1|7167_8037_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl|CDD|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.15289e-113
NZ_LT838273.1|WP_089086791.1|8050_8734_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl|CDD|129290	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases [Protein synthesis, tRNA and rRNA base modification].	7.49757e-88
NZ_LT838273.1|WP_000715278.1|6940_7144_+|50S-ribosomal-protein-L31	gnl|CDD|376487	pfam01197, Ribosomal_L31, Ribosomal protein L31.	1.40477e-32
NZ_LT838273.1|WP_001029404.1|11514_12453_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha	gnl|CDD|273113	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_LT838273.1|WP_001004721.1|5359_6676_-|transcription-termination-factor-Rho	gnl|CDD|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0

Protein sequences

>NZ_LT838273.1|WP_089086788.1|4049_4424_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT838273.1|WP_089086789.1|4552_5320_-|glutamate-racemase
MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHQIELLIVACNTASALALEEMQKHSKIPIVGVIEPSILAIKRQVENKNAPILVLGTKATIQSNAYDNALKQQGYLNVSHLATSLFVPLIEESILEGELLETCMRYYFAPLKILPEVIILGCTHFPLIAQKIESYFMGHFALPTPPLLIHSGDAIVEYLQQKYALKNNACAFPKVEFHASGDVIWLEKQAKEWLKL
>NZ_LT838273.1|WP_001004721.1|5359_6676_-|transcription-termination-factor-Rho
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEILKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVTGQVRSPKDQEKYYALLKVEAINYSPSDEIRNRPLFDNLTPLFPDEQIKLEYESTKVTGRMLDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQRSVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYSKMQQTKDNEEFLKLMNEK
>NZ_LT838273.1|WP_000715278.1|6940_7144_+|50S-ribosomal-protein-L31
MKKGIHPEYIPCKVTCVTSGKEIEVLSTKPEMRIDISSFCHPFYTGSDKIADTAGRVEKFKQRYNLK
>NZ_LT838273.1|WP_089086790.1|7167_8037_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MLYFLPTPIGNLADITLRTLEVLERCEVFLCEDTRVSKRLLHLLAKNPIISHSFPNIAAKKREFIAFHSHNDQEFLNQIEPSFFDKEIAVMSDAGMPSLSDPGMSLAAYALKHNIQYDVLPGANALTTAFCASGFLEGRFFYAGFLPHKSKERRLRIIKILNALAYLEEKTPVVFYESPHRLLETLRDLNDLAQGMHLFAAKELTKLHQQYYLGEISQIMTQLQKSNIQGEWVLVLLNEKKIEPSMGLSALLELDLPPKIKAKMEAAMTQKNAKELYCQRLLEEKKQCD
>NZ_LT838273.1|WP_089086791.1|8050_8734_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MQAVVYGKQVITHLLNSHHEKLQEIYLSKEIDKKLFFALKKACPNIIKVDNKKAQSLAKGGNHQGVLAKVELPLAASLKEIKKAQKLLVLCGITDVGNIGGIFRSAYCLGMDGVILDFAREFAYEGIVRSSLGLMYDLPFSVMPNTLDLINELKTSGFLCLGASMQGSSQAENLSLKKCALFLGSEHEGLSKKILAKMDAILSVKMRRDFDSLNVSVAAGILMDKIN
>NZ_LT838273.1|WP_089086792.1|8746_9712_+|sialidase
MEQNKKSLENLDLSDVQNISKDISGAALEELSLKNLDKNLQILKEVGATEICKATKIASKNIHSILEKRYESLSRVHARGFIQILEREYKIDLSAWVKEFDKVCVFKEGVGEEQKQETSPEETAKKLLKVELDYSINQANTSLSKKSSKWKPFVIVLGVVVIILVVVIIQNSSSLKEEREQESAIKSGTKNSSFNEVSPTEEKKLEPTPKLEEKPKEQDKQGKEAIKENPNTIYIIPKRDIWVEVIDLDEKKNSFQKVFKKSYPLEAKNHRLLLRFGHGHLILKNNHQEQDYNDSKTRRFLYDPNKGLTLINEAQYKVLQQ
>NZ_LT838273.1|WP_089086793.1|9708_10530_+|hypothetical-protein
MNKLFLAFIVGGMLLNADALNDKIENLMGERSYHMNKLFLERLFKNRKDFYEMGRLDSLKLLNTLKENGLLSFNFDKPSVLKITFKASSNPLEFAKSINNSLNMMGYSYVLPIKMQSSSGENVFSYELKTEYVLDPNILIETMKRHGFDFMDIRRVSLKEWEYDFALQKIKLPNARALVLSSDPVEFKEASGKYWLSVNQNAYLKISSNNPLWQPKIIFYDENLKIIQIIAKENRQQEIALNLLNGVRFIHITDAKNPIILKNGISVVFDAMP
>NZ_LT838273.1|WP_089086794.1|10600_11038_-|hypothetical-protein
MFIHEKIKSRFSRNWSLRNRGRHFASSSVYFFSLLVITAVNRSSAVAWLLMPEHLIGWFLISFSGEFVADMAFGKKSKIFKTRFGISIVSGVSLLLGALPAHLFFVWFGFINWWAVFFIEAGADLLVGCVIQKIFFGKYWVDRYY
>NZ_LT838273.1|WP_001029404.1|11514_12453_-|acetyl-CoA-carboxylase-carboxyl-transferase-subunit-alpha
MAIYLDFENHIKEIQNEIELALIRGDEDAKEILEKRLDKEVKTIYSNLTDFQKLQLARHPDRPYAMDYIDLILKDKYEVFGDRHYNDDKAIVCFIGKIDNVPVVVIGEEKGRGTKNKLLRNFGMPNPCGYRKALKMAKFAEKFNLPILMLVDTAGAYPGIGAEERGQSEAIAKNLQEFASLKVPTISVIIGEGGSGGALAIAVADKLAMMEYSIFSVISPEGCAAILWDDPSKTEVAIKAMKITPRDLKEAGLIDDIILEPSKGAHRDKFSAANTIKEYFLDALRTIQQDPHFLDNRYQKLMSLGSFVEGMN

Crispr_ID: NZ_LT838273_2

• CRISPR_ID: NZ_LT838273_2
• CRISPR_location: 1670743-1670822
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT838273_2

Consensus_repeat	Method
GAGAACCCATTTATGCTCAAGTT	CRISPRCasFinder

spacers of NZ_LT838273_2

>2.1|1670766|34|NZ_LT838273|CRISPRCasFinder
AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG

CRISPR arrays and Neighbor proteins around NZ_LT838273_2

CRISPR arrays

The CRISPR arrays of NZ_LT838273_2

>merge|NZ_LT838273|2|1670743-1670822|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTTAATAAAAAGAAAACAGGACAAGTAGCTAGCCCTGAAGAACCCATTTATGCTCAAGTT

>NZ_LT838273|2|2|1670743-1670822|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTT	AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG
AAGAACCCATTTATGCTCAAGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter	unknown	unknown	gnl|CDD|374896
NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_025449159.1|1661003_1662116_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH	unknown	unknown	unknown
NZ_LT838273.1|WP_089086787.1|1673066_1676606_+|type-IV-secretion-system-oncogenic-effector-CagA	unknown	unknown	gnl|CDD|380264
NZ_LT838273.1|WP_000855256.1|1659137_1659851_-|cag-pathogenicity-island-VirB5-family-T4SS-associated-adhesin-CagL	unknown	unknown	unknown
NZ_LT838273.1|WP_000814269.1|1662614_1663421_-|type-IV-secretion-system-chaperone-CagF	unknown	unknown	unknown
NZ_LT838273.1|WP_089086784.1|1659847_1660993_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI	unknown	unknown	unknown
NZ_LT838273.1|WP_000855886.1|1662131_1662560_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG	unknown	unknown	unknown
NZ_LT838273.1|WP_089086783.1|1658136_1659057_+|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN	unknown	unknown	unknown
NZ_LT838273.1|WP_000428893.1|1667498_1667726_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	unknown	unknown	gnl|CDD|273346
NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein	unknown	unknown	gnl|CDD|272885
NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	unknown	unknown	gnl|CDD|293175

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	gnl|CDD|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086787.1|1673066_1676606_+|type-IV-secretion-system-oncogenic-effector-CagA	gnl|CDD|380264	NF033422, onco_T4SS_CagA, type IV secretion system oncogenic effector CagA. CagA, an effector injected into host cells by the type IV secretion system (T4SS) apparatus of Helicobacter pylori, is an oncogenic toxin. Tyrosine phosphorylation at multiple Glu-Pro-Ile-Tyr-Ala (EPIYA) motifs creates a scaffold that interacts with multiple host signaling systems and sometimes allows neoplasias to begin in gastric epithelial cells.	0
NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein	gnl|CDD|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.53987e-15
NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter	gnl|CDD|374896	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system. T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.	6.0415e-33
NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	gnl|CDD|293175	pfam16567, CagD, Pathogenicity island component CagD. CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.	2.1214e-123

Protein sequences

>NZ_LT838273.1|WP_000428893.1|1667498_1667726_-|hypothetical-protein
MENKSIGQIFKESLKKSFFSGLWSCLKWSFILTLISLGLFLLVFRFQPETIKKYIKDPKDLQFYDDLRKKNGWDK
>NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter
MKFFTRITDSYKKVVVTLGLAITANPLMAVNSPATGITETKTLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS
>NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD
MINNNSNKKLRGFFLKVLLSLVVFSSYGSANDDKEAKKEVLEKEKNTPNGPVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL
>NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE
MFVASKQADEQKKLVIEQEVQKRQFQKIEELKADMQKGINPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTIKKKIVIDETNRDYGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDGIIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFAYNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTDATMEQKQTAISVVKELVKNLATKSDEKDENGNSVSFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMYQQIKEY
>NZ_LT838273.1|WP_000814269.1|1662614_1663421_-|type-IV-secretion-system-chaperone-CagF
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSNFLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINEGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIRQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIIPNWIQTDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQNKNSD
>NZ_LT838273.1|WP_000855886.1|1662131_1662560_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMSDYGPNNSFMYGYAPTYSDSSFLPPILGY
>NZ_LT838273.1|WP_025449159.1|1661003_1662116_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH
MAGTQAIYESSSAGFLSQVSSIISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSVPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILGQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK
>NZ_LT838273.1|WP_089086784.1|1659847_1660993_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI
MKCFLSIFSFLTFCGLSLDGAGAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATMSAMLKGANGVINGVNGMTGGFFAGSDILLGVMEGYSSALSALGGNVKIIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLEGFETWLKEAMKKATLIDYNSLTGQALFQSAIYAPALSFFSSMGTPFGIIETFTLAPTKCPYLDGLKISACLMGQVIQNYRMIVALIQNKLSDADFQNIAYLNGINEEIKTLKGSVDLNALIEAAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIANSKVIVK
>NZ_LT838273.1|WP_000855256.1|1659137_1659851_-|cag-pathogenicity-island-VirB5-family-T4SS-associated-adhesin-CagL
MKTLVKNTIFSFLLLSVLMAEDITSGLKQLDSTYQETNQQVLKNLDEIFSTTSPSANDKMGEEDALNIKKAAMALRGDLALLKANFEANELFFISEDVIFKTYMSSPELLLTYMKINPLDQKTAEQQCGISDKILVLYCEGKLKIEQEKQNIRERLETSLKAYQSNIGGTASLIIASQTLVESLKNKNFIKGIRKLMLAHNKVFLNYLEELDALERSLEQSKRQYLQERQSSKIIVK
>NZ_LT838273.1|WP_089086783.1|1658136_1659057_+|cag-pathogenicity-island-type-IV-secretion-system-protein-CagN
MKSIFKKLGSVALYSLVIYGGLNAINTALLPSEYKELVALGFKKIKTLYQRHDDKEITKEEKEFATNALREKLRNDRARVEQIQKNIEAFEKKNNSSVQKKAAKHRGLQELNETNANPLNDNPNGNSSTETKSNKDDNFDEMINKVNEAFVKPATPLVPDEWRTPEIEIVINKCIISSNDYDGLRKCLIKDIKDQKILAPLLEKIQEIETENNKFSRQHLNGLKLALNNNNNRTFLIASCAICEKRKKEMEQENNYQDTTNASEFGTTDTKENEAKDATFSNNRSKSELPNSVINQIEQSIAHGKK
>NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT838273.1|WP_089086787.1|1673066_1676606_+|type-IV-secretion-system-oncogenic-effector-CagA
MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGIFDESLKERQEAEKNGGSTGGDWLDIFLSFIFGKKQSSDVKETLNQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNALSSVLMGSHDGIEPEKVSLLYAGNGGFGDRHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKEINNPSFYLYKEDQLTGSQRALSQEEILNKIDFMEFLAQNNAKLDNLSEKEKEKFQNEIKDFQKDSKPYLDALGNDRIAFVSKKDSKHSALITEFNKGDLSYTLKDYGKKADKALDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFNLPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLEKINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGVNPEWISKVENLNAALNEFKNSKNKDFSKVTQAKSDLENSVKDVIINQKITDKVDNLNQAVSVAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGKSEIYQSVKNGVNGTLVGNGLSGIEATALAKNFSDIKKELNEKFKNFNNNNNGLKNSGEPIYAQVNKKKTGQVASPEEPIYAQVAKKVTKKIDQLNQAASGFGGVGQAGFPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGSFPLRRSAKVDDLSKAGLSRNQELTQKIDSLSQAVSEAKAGFFGNLERTIDNLKDSTKNNPMNLWAEGAKKVPASLSAKLDNYATNSHIRINSNIQNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFSQKNMKDYSDSFKFSTKLNNAVKDVKSGFTQFLANAFSTGYYSLARENAEHGIKNANTKGGFQKS
>NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein
MPFQRPPLLIHSGDAIVEYLQQKYALKNNACAFPKVEFHASGDVIWLEKQAKEWLKL
>NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR

Crispr_ID: NZ_LT838273_3

• CRISPR_ID: NZ_LT838273_3
• CRISPR_location: 1675732-1675811
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT838273_3

Consensus_repeat	Method
GAGAACCCATTTATGCTCAAGTT	CRISPRCasFinder

spacers of NZ_LT838273_3

>3.1|1675755|34|NZ_LT838273|CRISPRCasFinder
AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG

CRISPR arrays and Neighbor proteins around NZ_LT838273_3

CRISPR arrays

The CRISPR arrays of NZ_LT838273_3

>merge|NZ_LT838273|3|1675732-1675811|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTTAATAAAAAGAAAACAGGACAAGTAGCTAGCCCTGAAGAACCCATTTATGCTCAAGTT

>NZ_LT838273|3|3|1675732-1675811|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTT	AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG
AAGAACCCATTTATGCTCAAGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_025449159.1|1661003_1662116_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH	unknown	unknown	unknown
NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter	unknown	unknown	gnl|CDD|374896
NZ_LT838273.1|WP_000814269.1|1662614_1663421_-|type-IV-secretion-system-chaperone-CagF	unknown	unknown	unknown
NZ_LT838273.1|WP_089086784.1|1659847_1660993_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI	unknown	unknown	unknown
NZ_LT838273.1|WP_000855886.1|1662131_1662560_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG	unknown	unknown	unknown
NZ_LT838273.1|WP_089086787.1|1668077_1671617_+|type-IV-secretion-system-oncogenic-effector-CagA	unknown	unknown	gnl|CDD|380264
NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	unknown	unknown	gnl|CDD|273346
NZ_LT838273.1|WP_000428893.1|1667498_1667726_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein	unknown	unknown	gnl|CDD|272885
NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	unknown	unknown	gnl|CDD|293175

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT838273.1|WP_089086787.1|1668077_1671617_+|type-IV-secretion-system-oncogenic-effector-CagA	gnl|CDD|380264	NF033422, onco_T4SS_CagA, type IV secretion system oncogenic effector CagA. CagA, an effector injected into host cells by the type IV secretion system (T4SS) apparatus of Helicobacter pylori, is an oncogenic toxin. Tyrosine phosphorylation at multiple Glu-Pro-Ile-Tyr-Ala (EPIYA) motifs creates a scaffold that interacts with multiple host signaling systems and sometimes allows neoplasias to begin in gastric epithelial cells.	0
NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	gnl|CDD|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein	gnl|CDD|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.53987e-15
NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter	gnl|CDD|374896	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system. T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.	6.0415e-33
NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	gnl|CDD|293175	pfam16567, CagD, Pathogenicity island component CagD. CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.	2.1214e-123

Protein sequences

>NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT838273.1|WP_089086787.1|1668077_1671617_+|type-IV-secretion-system-oncogenic-effector-CagA
MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGIFDESLKERQEAEKNGGSTGGDWLDIFLSFIFGKKQSSDVKETLNQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNALSSVLMGSHDGIEPEKVSLLYAGNGGFGDRHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKEINNPSFYLYKEDQLTGSQRALSQEEILNKIDFMEFLAQNNAKLDNLSEKEKEKFQNEIKDFQKDSKPYLDALGNDRIAFVSKKDSKHSALITEFNKGDLSYTLKDYGKKADKALDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFNLPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLEKINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGVNPEWISKVENLNAALNEFKNSKNKDFSKVTQAKSDLENSVKDVIINQKITDKVDNLNQAVSVAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGKSEIYQSVKNGVNGTLVGNGLSGIEATALAKNFSDIKKELNEKFKNFNNNNNGLKNSGEPIYAQVNKKKTGQVASPEEPIYAQVAKKVTKKIDQLNQAASGFGGVGQAGFPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGSFPLRRSAKVDDLSKAGLSRNQELTQKIDSLSQAVSEAKAGFFGNLERTIDNLKDSTKNNPMNLWAEGAKKVPASLSAKLDNYATNSHIRINSNIQNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFSQKNMKDYSDSFKFSTKLNNAVKDVKSGFTQFLANAFSTGYYSLARENAEHGIKNANTKGGFQKS
>NZ_LT838273.1|WP_000428893.1|1667498_1667726_-|hypothetical-protein
MENKSIGQIFKESLKKSFFSGLWSCLKWSFILTLISLGLFLLVFRFQPETIKKYIKDPKDLQFYDDLRKKNGWDK
>NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter
MKFFTRITDSYKKVVVTLGLAITANPLMAVNSPATGITETKTLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS
>NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD
MINNNSNKKLRGFFLKVLLSLVVFSSYGSANDDKEAKKEVLEKEKNTPNGPVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL
>NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE
MFVASKQADEQKKLVIEQEVQKRQFQKIEELKADMQKGINPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTIKKKIVIDETNRDYGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDGIIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFAYNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTDATMEQKQTAISVVKELVKNLATKSDEKDENGNSVSFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMYQQIKEY
>NZ_LT838273.1|WP_000814269.1|1662614_1663421_-|type-IV-secretion-system-chaperone-CagF
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSNFLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINEGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIRQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIIPNWIQTDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQNKNSD
>NZ_LT838273.1|WP_000855886.1|1662131_1662560_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagG
MKTNFYKIKLLFAWCLIIGMFNAPLNADQNTDIKDISPEDMALNSVGLVSRDQLKIEIPKETLEQKVAILNDYNDKNVNIKFDDISLGSFQPNDNLGINAMWGIQNLLMSQMMSDYGPNNSFMYGYAPTYSDSSFLPPILGY
>NZ_LT838273.1|WP_025449159.1|1661003_1662116_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagH
MAGTQAIYESSSAGFLSQVSSIISSTSGVAGPFAGIVAGAMTAAIIPIVVGFTNPQMTAIMTQYNQSIAEAVSVPMKAANQQYNQLYQGFNDQSMAVGNNILNISKLTGEFNAQGNTQGAQISAVNSQIASILASNTTPKNPSAIEAYATNQIAVPSVPTTVEMMSGILGNITSAAPKYALALQEQLRSQASNSSMNDTADSLDSCTALGALVGSSKVFFSCMQISMTPMSVSMPTVYAKYQALATNALTSGVNPMTTPACPIGDKVLAVYCYAEKVAEILREYYIEFVKNNTNLLQNASQMILGQSGLATSTYDTQAISNISSLYNYNIVANKSFLKSHLTYLDYIKDKLKGQKDSYLTERVQTKIIVK
>NZ_LT838273.1|WP_089086784.1|1659847_1660993_-|cag-pathogenicity-island-type-IV-secretion-system-translocation-protein-CagI
MKCFLSIFSFLTFCGLSLDGAGAVITLEPALKAIQADAQAKQKTAQAELKAIEAQSSAKEKAIQAQIEGELRTQLATMSAMLKGANGVINGVNGMTGGFFAGSDILLGVMEGYSSALSALGGNVKIIVEKQKINTQTEIQNMQIALQKNNEIIKLKMNQQNALLEALKNSFEPSVTLKTQMEMLSQALGSSSDNAKYIAYNTIGIKAFEETLEGFETWLKEAMKKATLIDYNSLTGQALFQSAIYAPALSFFSSMGTPFGIIETFTLAPTKCPYLDGLKISACLMGQVIQNYRMIVALIQNKLSDADFQNIAYLNGINEEIKTLKGSVDLNALIEAAILNAENHLNYIENLEKKADLWEEQLKLERETTARNIANSKVIVK
>NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein
MPFQRPPLLIHSGDAIVEYLQQKYALKNNACAFPKVEFHASGDVIWLEKQAKEWLKL
>NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR

Crispr_ID: NZ_LT838273_4

• CRISPR_ID: NZ_LT838273_4
• CRISPR_location: 1680719-1680798
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT838273_4

Consensus_repeat	Method
GAGAACCCATTTATGCTCAAGTT	CRISPRCasFinder

spacers of NZ_LT838273_4

>4.1|1680742|34|NZ_LT838273|CRISPRCasFinder
AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG

CRISPR arrays and Neighbor proteins around NZ_LT838273_4

CRISPR arrays

The CRISPR arrays of NZ_LT838273_4

>merge|NZ_LT838273|4|1680719-1680798|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTTAATAAAAAGAAAACAGGACAAGTAGCTAGCCCTGAAGAACCCATTTATGCTCAAGTT

>NZ_LT838273|4|4|1680719-1680798|CRISPRCasFinder
GAGAACCCATTTATGCTCAAGTT	AATAAAAAGAAAACAGGACAAGTAGCTAGCCCTG
AAGAACCCATTTATGCTCAAGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT838273.1|WP_089086787.1|1668077_1671617_+|type-IV-secretion-system-oncogenic-effector-CagA	unknown	unknown	gnl|CDD|380264
NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	unknown	unknown	gnl|CDD|273346
NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein	unknown	unknown	gnl|CDD|350195
NZ_LT838273.1|WP_089086787.1|1673066_1676606_+|type-IV-secretion-system-oncogenic-effector-CagA	unknown	unknown	gnl|CDD|380264
NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein	unknown	unknown	gnl|CDD|272885
NZ_LT838273.1|WP_000428893.1|1667498_1667726_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT838273.1|WP_000814269.1|1662614_1663421_-|type-IV-secretion-system-chaperone-CagF	unknown	unknown	unknown
NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter	unknown	unknown	gnl|CDD|374896
NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	unknown	unknown	gnl|CDD|293175

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT838273.1|WP_089086787.1|1668077_1671617_+|type-IV-secretion-system-oncogenic-effector-CagA	gnl|CDD|380264	NF033422, onco_T4SS_CagA, type IV secretion system oncogenic effector CagA. CagA, an effector injected into host cells by the type IV secretion system (T4SS) apparatus of Helicobacter pylori, is an oncogenic toxin. Tyrosine phosphorylation at multiple Glu-Pro-Ile-Tyr-Ala (EPIYA) motifs creates a scaffold that interacts with multiple host signaling systems and sometimes allows neoplasias to begin in gastric epithelial cells.	0
NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE	gnl|CDD|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086787.1|1673066_1676606_+|type-IV-secretion-system-oncogenic-effector-CagA	gnl|CDD|380264	NF033422, onco_T4SS_CagA, type IV secretion system oncogenic effector CagA. CagA, an effector injected into host cells by the type IV secretion system (T4SS) apparatus of Helicobacter pylori, is an oncogenic toxin. Tyrosine phosphorylation at multiple Glu-Pro-Ile-Tyr-Ala (EPIYA) motifs creates a scaffold that interacts with multiple host signaling systems and sometimes allows neoplasias to begin in gastric epithelial cells.	0
NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein	gnl|CDD|272885	TIGR00067, Glutamate_racemase, glutamate racemase. This family consists of glutamate racemase, a protein required for making the UDP-N-acetylmuramoyl-pentapeptide used as a precursor in bacterial peptidoglycan biosynthesis. The most closely related proteins differing in function are aspartate racemases. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.53987e-15
NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein	gnl|CDD|350195	cd18808, SF1_C_Upf1, C-terminal helicase domain of Upf1-like family helicases. The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	1.43029e-33
NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter	gnl|CDD|374896	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system. T4SS_CagC is a family of putative pathogenicity island, type IV, conjugal DNA-protein transfer, secretory system proteins from Gram-negative bacteria.	6.0415e-33
NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD	gnl|CDD|293175	pfam16567, CagD, Pathogenicity island component CagD. CagD is a tightly conserved family of proteins found in the pathogenic strains of Helicobacter species. It is one of some 30 proteins, produced from the genomic insert termed the pathogenicity island, required for the type IV secretion system - T4SS - that delivers CagA oncoprotein toxin into the host cell. CagD is a covalent dimer in which each monomer folds as a single domain composed of five beta-strands and three alpha-helices. CagD partially associates with the inner membrane, where it may be exposed to the periplasmic space; this may indicate that CagD is released into the supernatant during host cell infection in order then to bind to the host cell surface, or to be incorporated into the pilus structure.	2.1214e-123

Protein sequences

>NZ_LT838273.1|WP_172951894.1|1677380_1677554_-|hypothetical-protein
MPFQRPPLLIHSGDAIVEYLQQKYALKNNACAFPKVEFHASGDVIWLEKQAKEWLKL
>NZ_LT838273.1|WP_089086788.1|1676877_1677252_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT838273.1|WP_089086787.1|1673066_1676606_+|type-IV-secretion-system-oncogenic-effector-CagA
MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGIFDESLKERQEAEKNGGSTGGDWLDIFLSFIFGKKQSSDVKETLNQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNALSSVLMGSHDGIEPEKVSLLYAGNGGFGDRHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKEINNPSFYLYKEDQLTGSQRALSQEEILNKIDFMEFLAQNNAKLDNLSEKEKEKFQNEIKDFQKDSKPYLDALGNDRIAFVSKKDSKHSALITEFNKGDLSYTLKDYGKKADKALDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFNLPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLEKINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGVNPEWISKVENLNAALNEFKNSKNKDFSKVTQAKSDLENSVKDVIINQKITDKVDNLNQAVSVAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGKSEIYQSVKNGVNGTLVGNGLSGIEATALAKNFSDIKKELNEKFKNFNNNNNGLKNSGEPIYAQVNKKKTGQVASPEEPIYAQVAKKVTKKIDQLNQAASGFGGVGQAGFPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGSFPLRRSAKVDDLSKAGLSRNQELTQKIDSLSQAVSEAKAGFFGNLERTIDNLKDSTKNNPMNLWAEGAKKVPASLSAKLDNYATNSHIRINSNIQNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFSQKNMKDYSDSFKFSTKLNNAVKDVKSGFTQFLANAFSTGYYSLARENAEHGIKNANTKGGFQKS
>NZ_LT838273.1|WP_089086788.1|1671888_1672263_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR
>NZ_LT838273.1|WP_089086787.1|1668077_1671617_+|type-IV-secretion-system-oncogenic-effector-CagA
MTNETINQQPQTEAAFNPQQFINNLQVAFLKVDNAVASFDPDQKPIVDKNDRDNRQAFEGISQLREEYSNKAIKNPTKKNQYFSDFINKSNDLINKDNLIDVESSTKSFQKFGDQRYRIFTSWVSHQNDPSKINTRSIRNFMENIIQPPIPDDKEKAEFLKSAKQSFAGIIIGNQIRTDQKFMGIFDESLKERQEAEKNGGSTGGDWLDIFLSFIFGKKQSSDVKETLNQEPVPHVQPDIATTTTDIQGLPPEARDLLDERGNFSKFTLGDMEMLDVEGVADMDPNYKFNQLLIHNNALSSVLMGSHDGIEPEKVSLLYAGNGGFGDRHDWNATVGYKDQQGNNVATIINVHMKNGSGLVIAGGEKEINNPSFYLYKEDQLTGSQRALSQEEILNKIDFMEFLAQNNAKLDNLSEKEKEKFQNEIKDFQKDSKPYLDALGNDRIAFVSKKDSKHSALITEFNKGDLSYTLKDYGKKADKALDREKNVTLQGNLKHDGVMFVNYSNFKYTNASKNPNKGVGVTNGVSHLEAGFSKVAVFNLPNLNNLAITSVVRRDLEDKLIAKGLSPQEANKLVKDFLSSNKELVGKALNFNKAVAEAKNTGNYDEVKRAQKDLEKSLKKREHLEKDVAKNLESKSGNKNKMEAKSQANSQKDEIFALINKEANRDARAIAYAQNLKGIKRELSDKLEKINKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGVNPEWISKVENLNAALNEFKNSKNKDFSKVTQAKSDLENSVKDVIINQKITDKVDNLNQAVSVAKIAGNFSGVEQALADLKNFSKEQLAQQAQKNESFNVGKSEIYQSVKNGVNGTLVGNGLSGIEATALAKNFSDIKKELNEKFKNFNNNNNGLKNSGEPIYAQVNKKKTGQVASPEEPIYAQVAKKVTKKIDQLNQAASGFGGVGQAGFPLKRHDKVDDLSKVGRSVSPEPIYATIDDLGGSFPLRRSAKVDDLSKAGLSRNQELTQKIDSLSQAVSEAKAGFFGNLERTIDNLKDSTKNNPMNLWAEGAKKVPASLSAKLDNYATNSHIRINSNIQNGAINEKATGMLTQKNPEWLKLVNDKIVAHNVGSVPLSEYDKIGFSQKNMKDYSDSFKFSTKLNNAVKDVKSGFTQFLANAFSTGYYSLARENAEHGIKNANTKGGFQKS
>NZ_LT838273.1|WP_000428893.1|1667498_1667726_-|hypothetical-protein
MENKSIGQIFKESLKKSFFSGLWSCLKWSFILTLISLGLFLLVFRFQPETIKKYIKDPKDLQFYDDLRKKNGWDK
>NZ_LT838273.1|WP_089086786.1|1667007_1667355_-|sodium:calcium-antiporter
MKFFTRITDSYKKVVVTLGLAITANPLMAVNSPATGITETKTLVVQIISVLAIVGGCALGVKGIADIWKISDDIKRGQATVFAYAQPIAMLAVAGGIIYLSTKFGFNIGESGGAS
>NZ_LT838273.1|WP_089087379.1|1666382_1667006_-|cag-pathogenicity-island-type-IV-secretion-system-protein-CagD
MINNNSNKKLRGFFLKVLLSLVVFSSYGSANDDKEAKKEVLEKEKNTPNGPVYTNLDFDSFKATIKNLKDKKVTFKEVNPDIIKDEVFDFVIVNRVLKKIKDLKHYDPIIEKIFDEKGKEMGLNVELQINPEVKDFFTFKSISTTNKQRCFLSLRGETREILCDDKLYNVLLAVFNSYDPNDLLKHISTIESLKKIFYTITCEAVYL
>NZ_LT838273.1|WP_089086785.1|1663422_1666374_-|cag-pathogenicity-island-type-IV-secretion-system-ATPase-CagE
MFVASKQADEQKKLVIEQEVQKRQFQKIEELKADMQKGINPFFKVLFDGGNRLFGFPETFIYSSIFILFVTIVLSVILFQAYEPVLIVAIVIVLVALGFKKDYRLYQRMERAMKFKKPFLFKGVKNKAFMSIFSMKPSKEMANDIHLNPNREDRLVSAANSYLANNYECFLDDGVILTNNYSLLGTIKLGGIDFLTTSKKDLIELHASIYSVFRNFVTPEFKFYFHTIKKKIVIDETNRDYGLIFSNDFMRAYNEKQKRESFYDISFYLTIEQDLLDTLNEPVMNKKHFADNNFEEFQRIIRAKLENFKDRIELIEELLSKYHPTRLKEYTKDGIIYSKQCEFYNFLVGMNEAPFICNRKDLYLKEKMHGGVKEVYFANKHGKILNDDLSEKYFSAIEISEYAPKSQSDLFDKINALDSEFIFMHAYSPKNSQVLKDKLAFTSRRIIISGGSKEQGMTLGCLSELVGNGDITLGSYGNSLVLFADSFEKMKQSVKECVSSLNAKGFLANAATFSMENYFFAKHCSFITLPFIFDVTSNNFADFIAMRAMSFDGNQENNAWGNSVMTLKSEINSPFYLNFHMPTDFGSASAGHTLILGSTGSGKTVFMSMTLNAMGQFAYNFPANVSKDKQKLTMVYMDKDYGAYGNIVAMGGEYVKIELGTDTGLNPFAWAACVQKTDATMEQKQTAISVVKELVKNLATKSDEKDENGNSVSFSLADSNTLAAAVTNLITGDMNLDYPITQLINAFGKDHNDPNGLVARLAPFCKSTNGEFQWLFDNKATDRLDFSKTIIGVDGSSFLDNNDVSPFICFYLFARIQEAMDGRRFVLDIDEAWKYLGDPKVAYFVRDMLKTARKRNAIVRLATQSITDLLACPIADTIREQCPTKIFLRNDGGNLSDYQRLANVTEKEFEIITKGLDRKILYKQDGSPSVIASFNLRGIPKEYLKILSTDTVFVKEIDKIIQNHSIIDKYQALRQMYQQIKEY
>NZ_LT838273.1|WP_000814269.1|1662614_1663421_-|type-IV-secretion-system-chaperone-CagF
MKQSLREQKLLKILENDVLTILDSFSNYLFELREELDFIEEEMEGEITEQNLTALYDFSNFLEDHVNVFYENVLNIDDVKTEHLYSGLIDSLNANLHFVKSFLSNQDLDFRFFKEINEGQDPQKTLSRLIPLQSGKNDASSFKANNSFVSLVYVYAYFMLETIRQSYRILRLLEKPINNNISEDMQSDIENFFVQANFLEYYVQNKIYPTNHAYDFTHLIMDSIIPNWIQTDMSVEAKKKELFEKYFQNIDEVTNKMLDQENQNKNSD
>NZ_LT838273.1|WP_089086788.1|1681861_1682236_+|hypothetical-protein
MIELLEQIDRALNQRKIRKTIGIITPYDAQKRRLRSEVEKCGFKNFDEIKIDTVDAFQGEEADIIIYSTVKTCGNLSFLLDSKRLNVAISRAKENLIFVGKKSFFENLRSDKNNIFSAILQVCR

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	841188 : 852068	9	uncultured_Caudovirales_phage(33.33%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_LT838273|841188:852068|DBSCAN-SWA
AATGGGTTTTGAAAAAAGCATTTTAGACAATTTGAACGGAGCGCAAAAAATCGCCGCAAGCCACATTCAAGGGCCTTTATTGATTTTAGCGGGAGCTGGGAGCGGTAAGACTAAGACTTTAACGAGCCGTTTAGCGTATTTGATTGGCGCTTGTGGCGTGCCTAGCGAGAACACTTTAACGCTCACTTTCACCAATAAAGCGAGTAAGGAAATGCAAGAAAGGGCTTTGAAATTGTTGGAAAACCAAGCCCTTATCCCCCCCTTGCTTTGCACTTTCCATCGTTTTGGTTTGCTGTTTTTAAGGCAACACATGAGCCTTTTAAAAAGGGCGTGCGATTTTTCGGTGTTAGATAGCGATGAAGTCAAAACGCTGTGCAAGCAGCTCAAAATTTCAAACTTCAGGGCGAGCATTTCTCAAATCAAAAACGGCATGATGGATTTGAGCGTGCAAGATAGCGAATGTTATAAAGCGTATGAACTTTATCAAAACGCGCTCAAAAAAGACAATTTAGTGGATTTTGACGATCTGCTTTATTTGAGCCTTAAGATTTTACAAGATAATGAAAAACTCGCCAAAGAGACTAGCGAACGCTACCATTACATTATGGTAGATGAATACCAAGACACGAACGCCCTGCAACTAGAATTTTTAAAACAATTGAGTTGCGCGCACCATAATTTGTGCGTGGTGGGCGATGACGATCAGAGCATTTATGGTTTTAGGGGGGCGGATATTTCTAACATTTTAAATTTTTCCAAGCATTTTAAAGGGGCTAAAATAGTGAAATTAGAGACCAACTACCGCTCCAGCGCTGAAATTTTAGCGTGCGCTAATTCCCTTATCAGCCATAACCAACACCGCCACATTAAAACGCTTCAAAGTTTCAAAGGCTCGCATAAAAGCGTGGTTTGTAAGGAATATTTAACGCAAAAAGAAGAGAGCCTGGATGTGGCTTATCAAATCAAAGCCCTTTTAAAGAAGGGCGAAAATTTAGAAAATATCGCTATTTTGTATCGTTTAAACGGGCTTAGCCGCAGCATTGAAGAGAGCTTGAACGCTTTGAATATCCCTTATAGGCTCATTGGAGCGGTGAGTTTCTATGAAAGAGCTGAGGTTAAAGACGCTTTGGCACTCATGCATGTGGTGGCGAAAAAAGACGATCGCTTTTTTATTAAGCGCGTTTTAAACAAGCCCCCAAGAGGCCTTGGCAAGATCACTCAAGAATGGATTTTTTCTCTTTTAGATGAAGAGAGTTTGGATTTAGAAGAAGCGCTAAAAATTGGGGCGTTTAAAGACAAACTAAACCCTAAAAACGAATACGCTTTGAATAAATTCACCGCTATGATAGGGCGTTTGAGGGAGGCTTTTGAAATTTCAGTAGAGAAGTTTTGCGAGCGGTTTTTAGAAGAAACTAACCTTTTAAAAAGCTATGAAAAAGAAGACAATTACGAAGAAAGAGAGGGCTTTATTAAAGAGCTTTTAAGTTTAGTGAAAGAGCATTTTAAAACTAACCCCACGCATTCTTTGCTGGATTTTTTGAATGAAAGCGTGCTAGATGTCCATAATACAGAAAACGCGCAAAAAGTGAGCTGCATGAGCGTGCATATGAGTAAGGGGTTAGAGTTTAAGCATGTGTTTGTGATTGGGTTAGAAGAGGGGTTTTTCCCGCATAGGGGGTTCAATCAAGAAAGCGATTTGGAAGAAGAAAGGCGCTTGGCTTACGTGGCGATCACTAGGGCTAAAGAAGGATTGCAGCTCTCTTATGTCAAAGAGCGTTCGTATTTTGGGAGGAAAATTTCTTGCTCGCCCTCTGTGTTTTTAGAAGAAGCCCAGTTGCTCAAAAGCGATCAAACCCCTAAACAGGATCACCCAAAAGATACGCCCATTAAAGTGGGGGATTTGATCAAACATAAGATTTTTGGCACCGGTAGGGTTTTAGGCGTGGAAAAGGGCTTGAGCGGTTTGTGTTTGAAAATCAATTGCGGAGGGAATGTCTATGATAAAATCTCAGAAAAATTTGTAGAAAAAGTGGATAACGAGTTTTGAAAATTTTAACCCTTTTTTTGATAGGTTTAAACGCGCTCTTCGCCCTAGATTTAAACACGCTTAAAACAGGGATCAAAGAAACTTACCTCAAAGAATACCAAGACTTAAAATTGGAAATTGAAACAATTAATTTAGAAATCCCGGAGCGTTTTTCTCACGCTTCCATTTTAAGCTATGAATTGAGCGCTTCTAACAAGCTTAAAAAAGATGGGGTTGTGTTTTTAAAATTGGAAAATGAGCCTAATTTACGCCTACCGGTGCGTTATAGCGTGATAGGCAGCATGCAGGCTTTTAAAAGCGTTAGCGCGATTAAAAAAGACGAGAACATCACCGCTAACAACACCAAAAAAGAGCGCGTTTCGTTTGGCGCGCTTTCTAACCCCTTGTTAGAGGGCGCGATTGATAAAGTGAGCGCGAAACATTTTATCCCCCCTGACACGCTTTTAAGCACAGATAAAACCCAAGCTTTAATCATCGTGCGTAAAAACGACATCATCACCGGGGTGTATGAAGAGGGGCAAATCAGCATAGAAATAAGCCTAAAAGCCCTAGAAAATGGTGCACTTAATCAAATCATTCAAGCGAAAAATTTAGAAAGCAATAAAATCTTAAAAGCGAAAGTGTTGAGCAGCTCTAAGGCGCAAATCTTATAAAGGATATTCATGAAATTAGTTTTAGGCATCAGCGGGGCGAGCGGGATACCCCTAGCCTTGCGGTTTTTAGAGAAATTACCCAAAGAAATTGAAGTTTTTGTCGTGGCGTCTAAAAACGCGCATGTCGTGGCGTTAGAAGAATCGAATATCAATCTTAAAAACGCCATGAAAGACTTACGGCCTAGCGCGACTTTTTTTAACGAGCAAGACATCCATGCGAGCATCGCTTCAGGGAGCTATGGTATCCATAAAATGGCGATCATCCCGGCGAGCATGGACATGGTGGCTAAAATCGCGCATGGCTTTGGGGGGGATTTGATTTCTAGGAGTGCCTCTGTGATGCTTAAAGAAAAGCGCCCCTTACTCATTGCCCCTAGAGAAATGCCTTTAAGCGCTATCATGTTAGAAAATTTGCTCAAACTCGCCCATTCTAATGCGATCATCGCACCGCCGATGATGACTTACTACACCCAGAGCAAGACTTTAGAAGCGATGCAAGATTTTTTAGTGGGGAAGTGGTTTGACAGCTTGGGAATAGAAAATGACTTATACCCACGATGGGGAATGAACTGATGCAAAAAATCGGCATTTACCCGGGCACTTTTGATCCGGTCACTAACGGGCATATAGACATCATCCACCGCTCCAGCGAATTGTTTGAAAAGCTCATTGTGGCTGTGGCGCACTCAAGTGCTAAAAACCCCATGTTTAGTTTAGATGAGCGCTTAAAAATGATGCAACTGGCCACTACAAGTTTTACAAATGTAGAATGCGTTGCGTTTGAAGGGCTATTAGCCAACCTGGCTAAAGAATACCATTGTAAGGTGTTAGTTAGGGGCTTAAGGGTGGTGAGCGATTTTGAATACGAATTGCAAATGGGCTATGCGAACAAATCCTTAAACCACGAATTAGAAACCTTGTATTTCATGCCCACTTTGCAAAACGCTTTCATCAGCTCTTCTATCGTGCGATCCATTATCGCGCATAAGGGCGATGCGAGCCATTTAGTGCCTAAAGAAATTTATCCTTTGATTTCAAAGGTTTAAAATGTATGTGGCGTTAGAAGGCGTTGATGGCGCGGGCAAAAGCACTCAAGTAGAATTATTAAAAAACAGGTTTAAAAACGCCCTTTTTACCAAAGAGCCAGGGGGGACGAGAATGGGCGAAAGTTTAAGATATATCGCTTTAAATGAAAATATCAGCGAATTAGCCCGAGCGTTTTTATTTTTAAGCGATAGGGCTGAGCATACAGAAAGCGTGATCAAACCGGCTTTAAAAGAAAAAAAGCTCATCATTAGCGACAGGAGTTTGATTTCTGGCATGGCTTATAGCGAGTTTTCAAGCTTGGAATTAAACCTGCTTGCCACTCAAAGCATCTTGCCTGCAAAAATCGTTCTTTTACTCATAGATAAAGAGGGCTTAAAACAGCGCTTAAGCCTTAAAAGTTTAGACAAAATAGAAAACCAAGGCACAGAGAAATTACTCACCATCCAGCAAAAGCTCAAAGCTCATGCTTATGCGTTAAAAGAAAAATTCGGGTGCGAAGTTTTGGAATTAAACGCTAAAGAAAGCGTTAAAAACTTACACGAACAAATCACCGCCTTTATAGAATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCCAATTGCCTAAACGATCTGCCCTTAAGCTTAAAAGTGAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACGCGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTAAGGATTTTACAAGAAAAAGGCTTGAATATCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTAAAAGGCTTTTGTCAAGGCAATTTAAAACCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCATATGCCGGGAAAAGCCTGGAATTTCGCGCTAACCACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTGTTAGATGACATTATCACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTGCAGCGCGGATGAATGAGTTATAATTTTGTTTTTTAAAAAAGGATAAACCCATGAATAAAGTTCCATCCATTGAGCCTCAAATCGCTGATAAGTTCAACAACGAGTTAAGAAATTATGGACTAGACTATAAACTAGAGCAAGAAAGCCTGAATACAGAAATTGATGAAGCTTTAAAAAATTACGCTTCTAAAAGTGGGGGTTTAGGGGGTAACCGCCCTGATGTGAAACTTTTATTAAACACACAAGACCCTAACAGAAGAATCCCTATTTTAATAGAATACAAAGGATTAAAAGATAAGCTCATTAAATTAGACAAAAACAAACTGGTAGAAAACTTTAAAAACCATGAGCCTCATTATAAAAACATTAGAGAATACGCCCTAAATGGGGCTTTGCATTACGCTAATGCGATTTTACACCACACGGACTACACTGAATGCATCGCCATAGGCATCACAGGCTATAAAGACAATAAAGGCGGCATATGCTCTCAAATCGCTGTTTATTATGTGAATAAAAGCAATTTGGGCATGGGGATAGATGTCTCAAAAGGCGAGCAAGCTTATAGTGATCTATCCTTTTTAAGCCGTAAGCATTTTAACGACTTTATTAAACGAGTAGACACCCTTTCTTTAAGCGATGAAGATTTAGAGCGCATTAGAGAAAAGAAAAACCAAGAAATAGAAGACTGCTTGACTTGTCTCAATAATGATATTTATAAAAAAGACAAGCTTTCTTTAAGCGAAGAAGATCGTTTGTATTTAGTGGTTGCGAGCATTATCGCTAATTTAGGCATCTCTAATTTGGTAGCCCCCCTAAAAAAAGAAGATTTAAAATCTAGCGATGAGGTCCATCAAAGAGATGGCGACATCATGCTCAGAAAAATCCAATCCTTTTTAGAGTATAAGCATTTGCCCCAAGAAAAAAAGCAAAGCATCATTTCTTTATTAGAGCCTTTATTAAAAAACGAAAACGACAACAAAGCCATTAATGGCGAAAGCCGTTTGAAGCGCTGTTTTAGTGAAATCGTGGATAATTTGGGCATTTATTATAAAATCGGTCTTAGCACGGATTTTACCGGTAAATTGTTCAATGAAATGTATCGCTGGCTGGGTTTCACGCAAGACCAATTAAACGATGTGGTGCTCACGCCTCCTTATGTCGCCACGCTTTTAGCCAGACTCTCCAAAGTCAATAAGGATAGTTTCGTGTGGGATTTTGCTACCGGAAGCGCTGGGTTATTAGTCGCAAGCATGAATTTGATGATAGAAGACGCTAAAAAGCGTATCACTAGCCCAAAGGAATTAGAGCAAAAAATCGCCCACATTAAAGCCAAGCAACTTTTAGGCATAGAAAAATTACAAAAAATCTATATTCTAGCGGTGTTAAACATGATTTTAATGGGCGATGGGAGCAGTCAAATCTTAAACCAAGACAGCTTGAGCGGTTTTGATGGCAAAGTCAATAATAAAGAATTTAAAGCTAACGCTTTTGTTTTAAACCCGCCTTATTCCGCTAGCGGTAATGGCATGGTGTTTGTGGAGCAGGCTTTAGAAAAAATGCAAAGCGGTTATGCGAGCGTGATCATCCAATCAAGCGCCGGCAGTGGCAAAGCCAAAGAATACAATGTAAGGATTTTGGAAAAACACACGCTTTTAGCGAGCATTAAAATGCCTTTAGATTTATTCATCGGCAAAAGCAGCGTTCAAACCCATATCTATGTTTTTAGGGTCAATGAAAAGCATGACGCTAAGCAAAAGGTGAAATTTATTAATTTCAGTAACGACGGCTACGCTAGAGCGAATCGCAAAAAAGCCAAAGCCAGCCACAATTTAAAAGACACGCATAACGCCAAAGAGCGCTACAACGAAGTCGTGGATTTAGTCCATATTGGCCAATCATGTTTGAAATTTTTAAGCGAAGATGACTACTATGAAAACACCATAGACCCCAAAAACGGGAGCGATTGGAACCAAAATAAACCCACCGACACCAAACCCGAATTAGAGGATTTTAAAAGAACGATAGCTGATTACCTTTCTTATGAAGTGGGCTTGATTTTAAAAAATCAAACGCCCCCAAAGTGATTGGCCCCCTTAGTAGCCAACTCAACGCTATTAAGTGGGGCGAGTTCAGATTAGGGGATTTGTTTGAAGCGAGTAACGGCGATTTTGACATCCAAAAACGCCATATCAATCATAAGGGCGAATTTGTCATCACCGCAGGGCTTAGCAATAATGGCGTTTTAGGGCAAAGCGATATAAAAGCAAAAGTTTTTGAAAGCCATACTATCACTATTGACATGTTTGGTTGCGCGTTTTATCGCAGTTTTCCTTATAAAATGGTAACACACGCTAGGGTATTTTCTCTCAAACCCAAATTTGAAATCAACCATAAAATCGGTTTGTTTTTATCCACGCTATTTTTTGGTTACCCTAAAAAATTCGGCTATGAAAACATGTGCTCATGGGTAAAAATTAAAAACGATAAGGTCATTCTACCCCTAAAACCCACCGCTAACACTCAAACCTTTGAGGATATTGATTTTCATTTCATGGAAAAATTCATAGCCGAACTTGAGGCTTATTTAAAAGTTACAGGGCTAGAAAACACCACCCTTTCTAGCGATGAAGAAAACGCCCTTAACGTTTTCAATGGCAACAATTCTGGGGGGGGTAATACCCCATGCGGCTTAACATGGCAACACTTCAAACTAGGGGATTTGTTTGAAATACGCCCCACAAAAGCCTATAACCTCACAAACCCTCATTTATTTGATAGTAACGCAAAAAATCCAGTCGTTACCAATTCTAGTTTGAACAATGGGATAAGCGGTTATTCTCCTTTAGAACCCACCGAAAAGGGCAATCAGATCACTTATAGCGATACCACGACTTCAGAGGGTATTTTTTATCAAAAAAGACCTTTTATAGGGTATTCGCATGTGCAAGGGCTATACCCTTTAAAATACCATGAGTTTTGGAATGAAAAAACCTTACTCTATATCGTTGTGGCTTTTAAAAAAGTAGCTTGTGGGCGTTTTGATTATGGTAATAAATTCAATCGTAAAATTGCTAGTGAAATGTCAATCATTCTCCCCACCAACCCACATGGCGGTATTGATTTCCATTTCATGCGCACCATCATCAACGCCCTAATGAAACAAACCATTCAAGGCGTGGTTCAATACTGCAGCGCTCAAATCCAGGCTACAAAAGAAATCATCAGCCAAGAAGCGCCCGTTCAAAAAGACTCGTTATTTTAAAAGGGGTTTTAAGCGCGCTCGCTTGTGTTACAATAAACTTAAAATTCGCTTGATTGAAGAGGGTTGAATAATGGAGCAGCCAGTCATTAAAGAAGGGACTTTAGCTTTAATTGATACTTTTGCGTATTTGTTTAGAAGCTATTACATGAGCGCTAAAACAAAACCTTTAACCAACGATAAGGGCTTTCCTACAGGGCTTTTAACGGGGCTTGTGGGCATGGTTAAAAAATTTTATAAGGATAAAAAAAACATGCCTTTTATCGTGTTCGCCCTAGAAAGCCAGACTAAAACTAAAAGAGCTGAAAAACTGGGCGAATACAAACAAAATCGTAAAGACGCCCCTAAAGAGATGCTTTTACAAATCCCTATCGCTTTAGAATGGTTGCAAAAAATGGGTTTTACTTGCGTGGAAATGAGCGGGTTTGAAGCCGATGACGTGATCGCTACTCTAGCCACGCTAAGCCCTTATAAAACGCGCATTTATTCTAAAGATAAGGATTTTAACCAGCTTTTGAGCGATAAAATCGCGCTTTTTGATGGCAAAACGGAGTTTTTGGCGAAGGATTGCGTGGAAAAATACGGGATTTTGCCGAGTCAATTCACGGATTATCAGGGCATTGTAGGGGATAGCAGCGATAATTACAAGGGGATTAAGGGCATTGGGAGCAAGAACGCTAAGGAATTGTTACAACAATTAGGGAGCTTGGAAAAAATCTATGAAAATTTAGACTTGGCGAAAAATTTACTCAGCCCTAAAATGTATCAAGCCCTTATACAAGACAAAGAGAGCGCGTTTTTAAGCAAAGAATTAGCCACTTTAGAAAGAGGGTGCATTAAAGAATTTGATTTTTTAAGTTGCGCTTTTCCTAGCGAAAACCCCCTATTGAAAATCAAAGACGAACTGAAAGAATATGGTTTTATTTCCACTTTAAGGGATTTAGAAAAATCCCCTTTAATTGTAGAAAACGCCCCCATATTAGACAGCGCCCCCGCCTTAGAAAACGCCCCTAAAAAATCGTGCATGATCGTTTTAGAAAGCGCTGAGCCTTTGAGCATGTTTTTAGAAAAATTAAAAAACCCTAACGCTAGGGTTTTTATGCGTTTGGTGCTAGATAAAGAAAAAAAAGTTCTAGCCCTAGCGTTTTTATTACAAGATCAAGGCTATTTTTTACCTTTAGAAGAGGCGTTATTTTCGCCCTTTTCTTTGGAGTTTTTGCAAAACGCTTTTTCTCAAATGTTACAGCATGCGCAAATCATTGGGCATGATTTAAAGCCTTTATTGAGCTTTTTAAAAGCCAAATATCAGGTGTCTTTAGAAAACATCCGCATCCAGGACACTCAAATTTTAGCGTTTTTAAAGAATCCGGAAAAAGTGGGGTTTGATGAGGTTTTAAAGGAATATTTAAAAGAAGATTTAATCCCGCATGAAAAAATCAAAGATTTTAAAACAACAAGCAAGGCGGAAAAATTAGAGCAATTGAGTTTGGAATTAAACGCTTTAAAGCGTTTGTGCGAATACTTTGAAAAAGGGGGGCTAGAAGAGGGTTTGCTTATTTTGGCTAGAGACATTGAAACGCCGTTCATGAAAGTTTTAATGGGCATGGAATTTCAAGGCTTTAAGATTGATGCGCCTTATTTCAAGCGATTAGAGCAGGAGTTTAAAGATGAATTAAACGTTTTAGAGCGCCAAATTTTGGATTTAATCGGCGTGGATTTTAACCTCAATTCGCCCAAGCAACTTAGCGAAGTCTTGTATGAAAAATTAGGGCTTCCTAAAAATAAAAGCCATTCTACCGATGAAAAAAATTTGTTAAAAATCCTAGACAAGCACCCAAGCATCCCTTTGATTTTAGAATACAGGGAATTGAATAAGCTTTTTAACACTTACACCACTCCCTTATTGCGCTTAAAAGACAAAGACGATAAAATCCATACCACTTTCATCCAAACCGGCACAGCTACCGGGCGTTTAAGCTCGCATTCGCCTAATTTGCAAAATATCCCGGTGCGATCGCCTAAAGGCTTACTCATTCGTAAGGGCTTTATCGCTAGCTCTAAAGAATATTGTTTGCTAGGGGTGGATTATTCGCAGATTGAATTGCGCTTATTAGCCCATTTCAGCCAGGATAAGGATTTAATGGAGGCGTTTTTAAAGGGGCGAGACATCCATTTAGAAACTTCTAAAGCGTTGTTTGGAGAAGATCTGGCCAAAGAAAAACGATCCATCGCTAAAAGCATTAATTTTGGGCTGGTGTATGGCATGGGGAGTAAGAAATTGAGCGAAACTTTAAACATCCCTTTAAGTGAGGCTAAAAGTTACATAGAAGCGTATTTCAAGCGATTCCCTAGCATTAAAGATTATTTAAATGGCATGCGAGAAGAGATTTTAAAAACTTCTAAGGCCTTTACTTTGCTGGGGCGTTACCGGGTGTTTGATTTTAATGGCGTGAATGATTATGTCAAGGGCAATTATTTGCGAGAGGGCGTGAATGCGATTTTTCAAGGGAGCGCGAGCGATTTATTGAAATTAGGCATGCTCAAAGTGAGCGAGCGTTTCAAAAATAACCCTTCGGTGAGGCTGCTTTTGCAAGTGCATGACGAATTGATTTTTGAAATTGAAGAAAAAAACGCCCCAGAGTTGCAGCAAGAAATCCAACGCATTCTTAATGATGAAGTGTATCCTTTGAGGGTGCCGTTAGAAACGAGCGCGTTTATCGCTAAGCGTTGGAATGAACTAAAAGGTTAG

Protein sequences of DBSCAN-SWA_1

>NZ_LT838273|841188:852068|845497_846073_+|WP_001203585.1|DBSCAN-SWA
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVRILQEKGLNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANHPRDFTFKGDKNLDYFLLDDIITTGTTLKEALKYLKALNIKAHFAIALCSADE
>NZ_LT838273|841188:852068|849392_852068_+|WP_172825135.1|DBSCAN-SWA
MEQPVIKEGTLALIDTFAYLFRSYYMSAKTKPLTNDKGFPTGLLTGLVGMVKKFYKDKKNMPFIVFALESQTKTKRAEKLGEYKQNRKDAPKEMLLQIPIALEWLQKMGFTCVEMSGFEADDVIATLATLSPYKTRIYSKDKDFNQLLSDKIALFDGKTEFLAKDCVEKYGILPSQFTDYQGIVGDSSDNYKGIKGIGSKNAKELLQQLGSLEKIYENLDLAKNLLSPKMYQALIQDKESAFLSKELATLERGCIKEFDFLSCAFPSENPLLKIKDELKEYGFISTLRDLEKSPLIVENAPILDSAPALENAPKKSCMIVLESAEPLSMFLEKLKNPNARVFMRLVLDKEKKVLALAFLLQDQGYFLPLEEALFSPFSLEFLQNAFSQMLQHAQIIGHDLKPLLSFLKAKYQVSLENIRIQDTQILAFLKNPEKVGFDEVLKEYLKEDLIPHEKIKDFKTTSKAEKLEQLSLELNALKRLCEYFEKGGLEEGLLILARDIETPFMKVLMGMEFQGFKIDAPYFKRLEQEFKDELNVLERQILDLIGVDFNLNSPKQLSEVLYEKLGLPKNKSHSTDEKNLLKILDKHPSIPLILEYRELNKLFNTYTTPLLRLKDKDDKIHTTFIQTGTATGRLSSHSPNLQNIPVRSPKGLLIRKGFIASSKEYCLLGVDYSQIELRLLAHFSQDKDLMEAFLKGRDIHLETSKALFGEDLAKEKRSIAKSINFGLVYGMGSKKLSETLNIPLSEAKSYIEAYFKRFPSIKDYLNGMREEILKTSKAFTLLGRYRVFDFNGVNDYVKGNYLREGVNAIFQGSASDLLKLGMLKVSERFKNNPSVRLLLQVHDELIFEIEEKNAPELQQEIQRILNDEVYPLRVPLETSAFIAKRWNELKG
>NZ_LT838273|841188:852068|848140_849322_+|WP_089087245.1|DBSCAN-SWA
MIGPLSSQLNAIKWGEFRLGDLFEASNGDFDIQKRHINHKGEFVITAGLSNNGVLGQSDIKAKVFESHTITIDMFGCAFYRSFPYKMVTHARVFSLKPKFEINHKIGLFLSTLFFGYPKKFGYENMCSWVKIKNDKVILPLKPTANTQTFEDIDFHFMEKFIAELEAYLKVTGLENTTLSSDEENALNVFNGNNSGGGNTPCGLTWQHFKLGDLFEIRPTKAYNLTNPHLFDSNAKNPVVTNSSLNNGISGYSPLEPTEKGNQITYSDTTTSEGIFYQKRPFIGYSHVQGLYPLKYHEFWNEKTLLYIVVAFKKVACGRFDYGNKFNRKIASEMSIILPTNPHGGIDFHFMRTIINALMKQTIQGVVQYCSAQIQATKEIISQEAPVQKDSLF
>NZ_LT838273|841188:852068|844459_844933_+|WP_042636077.1|DBSCAN-SWA
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATTSFTNVECVAFEGLLANLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPLISKV
>NZ_LT838273|841188:852068|841188_843234_+|WP_172825134.1|DBSCAN-SWA
MGFEKSILDNLNGAQKIAASHIQGPLLILAGAGSGKTKTLTSRLAYLIGACGVPSENTLTLTFTNKASKEMQERALKLLENQALIPPLLCTFHRFGLLFLRQHMSLLKRACDFSVLDSDEVKTLCKQLKISNFRASISQIKNGMMDLSVQDSECYKAYELYQNALKKDNLVDFDDLLYLSLKILQDNEKLAKETSERYHYIMVDEYQDTNALQLEFLKQLSCAHHNLCVVGDDDQSIYGFRGADISNILNFSKHFKGAKIVKLETNYRSSAEILACANSLISHNQHRHIKTLQSFKGSHKSVVCKEYLTQKEESLDVAYQIKALLKKGENLENIAILYRLNGLSRSIEESLNALNIPYRLIGAVSFYERAEVKDALALMHVVAKKDDRFFIKRVLNKPPRGLGKITQEWIFSLLDEESLDLEEALKIGAFKDKLNPKNEYALNKFTAMIGRLREAFEISVEKFCERFLEETNLLKSYEKEDNYEEREGFIKELLSLVKEHFKTNPTHSLLDFLNESVLDVHNTENAQKVSCMSVHMSKGLEFKHVFVIGLEEGFFPHRGFNQESDLEEERRLAYVAITRAKEGLQLSYVKERSYFGRKISCSPSVFLEEAQLLKSDQTPKQDHPKDTPIKVGDLIKHKIFGTGRVLGVEKGLSGLCLKINCGGNVYDKISEKFVEKVDNEF
>NZ_LT838273|841188:852068|843896_844460_+|WP_000780111.1|DBSCAN-SWA
MKLVLGISGASGIPLALRFLEKLPKEIEVFVVASKNAHVVALEESNINLKNAMKDLRPSATFFNEQDIHASIASGSYGIHKMAIIPASMDMVAKIAHGFGGDLISRSASVMLKEKRPLLIAPREMPLSAIMLENLLKLAHSNAIIAPPMMTYYTQSKTLEAMQDFLVGKWFDSLGIENDLYPRWGMN
>NZ_LT838273|841188:852068|844934_845510_+|WP_000289021.1|DBSCAN-SWA
MYVALEGVDGAGKSTQVELLKNRFKNALFTKEPGGTRMGESLRYIALNENISELARAFLFLSDRAEHTESVIKPALKEKKLIISDRSLISGMAYSEFSSLELNLLATQSILPAKIVLLLIDKEGLKQRLSLKSLDKIENQGTEKLLTIQQKLKAHAYALKEKFGCEVLELNAKESVKNLHEQITAFIECAV
>NZ_LT838273|841188:852068|846107_848144_+|WP_089087244.1|DBSCAN-SWA
MNKVPSIEPQIADKFNNELRNYGLDYKLEQESLNTEIDEALKNYASKSGGLGGNRPDVKLLLNTQDPNRRIPILIEYKGLKDKLIKLDKNKLVENFKNHEPHYKNIREYALNGALHYANAILHHTDYTECIAIGITGYKDNKGGICSQIAVYYVNKSNLGMGIDVSKGEQAYSDLSFLSRKHFNDFIKRVDTLSLSDEDLERIREKKNQEIEDCLTCLNNDIYKKDKLSLSEEDRLYLVVASIIANLGISNLVAPLKKEDLKSSDEVHQRDGDIMLRKIQSFLEYKHLPQEKKQSIISLLEPLLKNENDNKAINGESRLKRCFSEIVDNLGIYYKIGLSTDFTGKLFNEMYRWLGFTQDQLNDVVLTPPYVATLLARLSKVNKDSFVWDFATGSAGLLVASMNLMIEDAKKRITSPKELEQKIAHIKAKQLLGIEKLQKIYILAVLNMILMGDGSSQILNQDSLSGFDGKVNNKEFKANAFVLNPPYSASGNGMVFVEQALEKMQSGYASVIIQSSAGSGKAKEYNVRILEKHTLLASIKMPLDLFIGKSSVQTHIYVFRVNEKHDAKQKVKFINFSNDGYARANRKKAKASHNLKDTHNAKERYNEVVDLVHIGQSCLKFLSEDDYYENTIDPKNGSDWNQNKPTDTKPELEDFKRTIADYLSYEVGLILKNQTPPK
>NZ_LT838273|841188:852068|843230_843887_+|WP_089087243.1|DBSCAN-SWA
MKILTLFLIGLNALFALDLNTLKTGIKETYLKEYQDLKLEIETINLEIPERFSHASILSYELSASNKLKKDGVVFLKLENEPNLRLPVRYSVIGSMQAFKSVSAIKKDENITANNTKKERVSFGALSNPLLEGAIDKVSAKHFIPPDTLLSTDKTQALIIVRKNDIITGVYEEGQISIEISLKALENGALNQIIQAKNLESNKILKAKVLSSSKAQIL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172825134.1|841188_843234_+	DNA helicase UvrD	A7KV33	Bacillus_phage	1.0e-89	35.4
WP_089087243.1|843230_843887_+	flagellar basal body P-ring formation protein FlgA	NA	NA	NA	NA
WP_000780111.1|843896_844460_+	UbiX family flavin prenyltransferase	NA	NA	NA	NA
WP_042636077.1|844459_844933_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.6e-28	45.5
WP_000289021.1|844934_845510_+	dTMP kinase	Q2XUX0	environmental_halophage	5.8e-11	39.4
WP_001203585.1|845497_846073_+	ComF family protein	NA	NA	NA	NA
WP_089087244.1|846107_848144_+	N-6 DNA methylase	A0A2H4JBT5	uncultured_Caudovirales_phage	2.4e-75	34.3
WP_089087245.1|848140_849322_+	restriction endonuclease subunit S	A0A2H4J2Z3	uncultured_Caudovirales_phage	7.2e-24	51.3
WP_172825135.1|849392_852068_+	DNA polymerase I	A0A218MKQ4	uncultured_virus	2.6e-61	38.6