CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT859959	Bradyrhizobium sp. ORS 285 chromosome BRAD285	1 crisprs	csa3,WYL,cas3,RT,DEDDh	1	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT859959_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859959_1

7358525-7358679

Orphan

Consensus_repeat	Method
TTGTTTGAGCATGATCTTTTCGGAAAACCGCTGCGCACTTTTCCGGATCATGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT859959_1

>merge|NZ_LT859959|1|7358525-7358679|CRISPRCasFinder
TTGTTTGAGCATGATCTTTTCGGAAAACCGCTGCGCACTTTTCCGGATCATGCTCTAAAGCGCGATGAGATCAGGATGAATCGTCATCGCGCTTTAGGTTATTGTTTGCGCATGATCTTTTCGGAAAACCGCTGCGCACTTTTCCGGATCATGCT

>NZ_LT859959|1|1|7358525-7358679|CRISPRCasFinder
TTGTTTGAGCATGATCTTTTCGGAAAACCGCTGCGCACTTTTCCGGATCATGCT	CTAAAGCGCGATGAGATCAGGATGAATCGTCATCGCGCTTTAGGTTA
TTGTTTGCGCATGATCTTTTCGGAAAACCGCTGCGCACTTTTCCGGATCATGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859959.1\|WP_006611142.1\|7370870_7374341_+\|double-strand-break-repair-helicase-AddA	unknown	unknown	gnl\|CDD\|274298
NZ_LT859959.1\|WP_006613407.1\|7349952_7351257_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235406
NZ_LT859959.1\|WP_006613408.1\|7351366_7352806_+\|caspase-family-protein	unknown	unknown	gnl\|CDD\|226700
NZ_LT859959.1\|WP_006611151.1\|7360067_7360943_+\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NZ_LT859959.1\|WP_006611143.1\|7367727_7370874_+\|double-strand-break-repair-protein-AddB	unknown	unknown	gnl\|CDD\|274300
NZ_LT859959.1\|WP_006611148.1\|7362454_7363759_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_LT859959.1\|WP_006611146.1\|7364460_7365963_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_LT859959.1\|WP_006613416.1\|7357596_7358520_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_LT859959.1\|WP_006613415.1\|7357395_7357593_+\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
NZ_LT859959.1\|WP_006611145.1\|7366196_7366505_+\|PilZ-domain-containing-protein	unknown	unknown	unknown
NZ_LT859959.1\|WP_006613410.1\|7354193_7354868_+\|LON-peptidase-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225362
NZ_LT859959.1\|WP_006613414.1\|7356797_7357340_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LT859959.1\|WP_006613409.1\|7353224_7354145_+\|thioredoxin	unknown	unknown	gnl\|CDD\|225660
NZ_LT859959.1\|WP_006611147.1\|7364082_7364421_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|366157
NZ_LT859959.1\|WP_006611150.1\|7360948_7361824_-\|DUF4339-domain-containing-protein	unknown	unknown	gnl\|CDD\|379517
NZ_LT859959.1\|WP_006613411.1\|7354883_7355714_-\|FTR1-family-protein	unknown	unknown	gnl\|CDD\|251822
NZ_LT859959.1\|WP_083846434.1\|7355725_7356022_-\|cupredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379208
NZ_LT859959.1\|WP_006611149.1\|7362032_7362371_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_LT859959.1\|WP_006613413.1\|7356357_7356708_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859959.1\|WP_006611144.1\|7366662_7367385_+\|nucleotidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|133044

Protein	Function_ID	Function_description	E-value
NZ_LT859959.1\|WP_006613407.1\|7349952_7351257_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235406	PRK05321, PRK05321, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_LT859959.1\|WP_006613408.1\|7351366_7352806_+\|caspase-family-protein	gnl\|CDD\|226700	COG4249, COG4249, Uncharacterized protein containing caspase domain [General function prediction only].	2.70099e-24
NZ_LT859959.1\|WP_006611151.1\|7360067_7360943_+\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	6.10986e-133
NZ_LT859959.1\|WP_006611143.1\|7367727_7370874_+\|double-strand-break-repair-protein-AddB	gnl\|CDD\|274300	TIGR02786, conserved_hypothetical_protein, double-strand break repair protein AddB, alphaproteobacterial type. AddAB is a system well described in the Firmicutes as a replacement for RecBCD in many prokaryotes for the repair of double stranded break DNA damage. More recently, a distantly related gene pair conserved in many alphaproteobacteria was shown also to function in double-stranded break repair in Rhizobium etli. This family consists of AddB proteins of the alphaproteobacteial type. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LT859959.1\|WP_006611142.1\|7370870_7374341_+\|double-strand-break-repair-helicase-AddA	gnl\|CDD\|274298	TIGR02784, ATP-dependent_nuclease_subunit_A, double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LT859959.1\|WP_006611146.1\|7364460_7365963_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	6.59666e-160
NZ_LT859959.1\|WP_006613416.1\|7357596_7358520_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	8.37707e-13
NZ_LT859959.1\|WP_006613415.1\|7357395_7357593_+\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	1.81407e-24
NZ_LT859959.1\|WP_006613410.1\|7354193_7354868_+\|LON-peptidase-substrate-binding-domain-containing-protein	gnl\|CDD\|225362	COG2802, COG2802, Uncharacterized protein, similar to the N-terminal domain of Lon protease [General function prediction only].	9.97468e-66
NZ_LT859959.1\|WP_006613414.1\|7356797_7357340_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.61236e-07
NZ_LT859959.1\|WP_006613409.1\|7353224_7354145_+\|thioredoxin	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	1.11469e-98
NZ_LT859959.1\|WP_006611147.1\|7364082_7364421_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|366157	pfam00543, P-II, Nitrogen regulatory protein P-II. P-II modulates the activity of glutamine synthetase.	2.67499e-56
NZ_LT859959.1\|WP_006611150.1\|7360948_7361824_-\|DUF4339-domain-containing-protein	gnl\|CDD\|379517	pfam14237, DUF4339, Domain of unknown function (DUF4339). This domain is found in bacteria, archaea and eukaryotes, and is approximately 50 amino acids in length. There are two completely conserved residues (G and W) that may be functionally important.	2.57612e-15
NZ_LT859959.1\|WP_006613411.1\|7354883_7355714_-\|FTR1-family-protein	gnl\|CDD\|251822	pfam03239, FTR1, Iron permease FTR1 family.	9.81508e-23
NZ_LT859959.1\|WP_083846434.1\|7355725_7356022_-\|cupredoxin-domain-containing-protein	gnl\|CDD\|379208	pfam13473, Cupredoxin_1, Cupredoxin-like domain. The cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel.	4.71306e-26
NZ_LT859959.1\|WP_006611149.1\|7362032_7362371_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	1.15561e-56
NZ_LT859959.1\|WP_006611148.1\|7362454_7363759_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	2.4485e-162
NZ_LT859959.1\|WP_006611144.1\|7366662_7367385_+\|nucleotidyltransferase-family-protein	gnl\|CDD\|133044	cd06422, NTP_transferase_like_1, NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.	2.66006e-101

>NZ_LT859959.1|WP_006613416.1|7357596_7358520_+|alpha/beta-fold-hydrolase
MRAVVICCALALAMVPSLLRAEESAIRVGAIDAVLTTPAGVERPPVALLIAGSGSTDRDGNGPQLKPATLKKLAEQLATRGIASLRYDKRGARGWKAEFGRPEDFRFKDYVDDSASLVDFLRGKFARIVLVGHSEGGLVAILTARRTPVDRLVLLATSARRQGDLLKTQLERKLPAAKMEPVAKAIDAIMAGQVVDPPPPELPITPSMQPGIGSAFAEDPIDPLKQIVIPILIVGGARDSQVARLDMVALAAAAPAAKTLWLPEMNHVLVDVANEDENLSTYNDPDRPLDPDMVEAVSGFISAAGPR
>NZ_LT859959.1|WP_006613415.1|7357395_7357593_+|Trm112-family-protein
MNAPLERPANSVDPKLLEILVCPMTKGPLEYDAAKQELVSRSAKLAYPIRDGIPIMLPEEARKID
>NZ_LT859959.1|WP_006613414.1|7356797_7357340_+|TetR/AcrR-family-transcriptional-regulator
MNDQLSQQDWLDQGLKILAGKGFTALKAEPMAKVMGVSRGSFYWHFADVAAFHAELLKRWREIAAEQIITGVEASVGDEPAIAVLLRRTLSIRLTLERAVRSWAASSPLARQAVQAIDKRRLGYIEGLLAAQGLPAAPAQARAQVLYWAFLGYALSDRQLPPEQQQNVINELIRIALHEP
>NZ_LT859959.1|WP_006613413.1|7356357_7356708_-|hypothetical-protein
MRDVLLQAAGVTAIIVALIHGVPGETVVFARASIAPERLRTLLRVVWQASTVAWIGCGVLLIAAPWMESEPARHWTVLTAIGVFGLAALGNAWATRARHFGWIMLAGVVAMAAAGY
>NZ_LT859959.1|WP_083846434.1|7355725_7356022_-|cupredoxin-domain-containing-protein
MALLATQVQAEGPNEICLTYANGQFEPKEPTVPADAPLTIRVKNMEGKAIEFESETLKIEKVIAANSEAVLNVRAMKSGRYEFYNDFNEKARGFVNVQ
>NZ_LT859959.1|WP_006613411.1|7354883_7355714_-|FTR1-family-protein
MLAALIIVFREVFEAGLIVGIVLAVTSAVPHRLRWIGAGLFAGLIGACAVAAFAGTLTQLFEGMGQEVFNAAILSTAVIMLTWHNVWMARHGREMATELRTMGQAVAEGAKPLVALATVIAIAVLREGSEVALFLYGVAASDEGGGRALLGGGMLGLLLGVAVCLATYLGLMRIPPRALFRTTTVLITLLSAGMAAQAVFFLARANWLTSFDQVMWDSSAVLPEKGLAGRTLKALVGYTDQPTAMQLAVYVGVILATVALMRLTAAPSPRRTVAAE
>NZ_LT859959.1|WP_006613410.1|7354193_7354868_+|LON-peptidase-substrate-binding-domain-containing-protein
MPINAEYRGPADLPEIIPVFPLAGALLLPRGQMPLNIFEPRYLAMVDDAFRDGHRLIGMIQPDVTHSSSEERPVLFKVGCVGRITQLAESGDGRYILELTGVSRFKVAEEMTVLTPYRQCRVDYFPFVDDFTARKGEDAVDREALLAVLTDFLKANNLKVDWAGIEAAPNEALVNALAMMSPYGPAEKQAMLEAPDLKTRAEILVAVTEMDLAKKRTSGDPPLQ
>NZ_LT859959.1|WP_006613409.1|7353224_7354145_+|thioredoxin
MTIVEQGNGAAPQVPDLIKDTTTQTFVKDVIEESKRQPVLIDFWAPWCGPCKQLTPILEKAVQAAKGKVKLVKMNIDEHPAIPRQMGIQSIPAVIAFVGGRPADGFMGAVPESQITAFIEKITKGVPGIGEPDIAEILKEAEAALAEGDPAGAAQIYAEVLSFDAANIPALAGLAKCYVETGAIDQAKETLAQIPEAKRNDSAVTAVQAAIDLAEQAQSLGPVGELEQTVAANPLDHQARFDLAIALNAAGKRKEATDHLLEIVKRDRKWNEDGARKQLVQFFEAWGGADEATVEGRKRLSTILFS
>NZ_LT859959.1|WP_006613408.1|7351366_7352806_+|caspase-family-protein
MRRVIAQVGEVGQQLSTLLLVLVAILAITGPAAADKRVALVIGNSIHERAPLLDEPASDARLLAAKLTQLGFILSGGVAQIDLDKKGFDRALAEFKGRIADADLALIYYAGYGLNLNGTNYLVPVNAAPATAADLERELRDLNAVLRELEGSDRRQNVVILDAFRANPFEPRGITGLTAGLSPGRVPPRTLISFAAQPGTVGQRGSDGHGVFGTALAQALQQQDRRLVDVFGQTAQSVERLTNGAQQPLVMFTQIDGGAQPDPTTTLRPAQPAAPSANQATASPSNSAAPPVAQDARTPGLAVLYDEDVSDPKGKRYSGSVAWRLETVKTAGRPVPVIWAQIDIPDRKLKMSLQLRRNEDPSLPASHVAELTFSPGADFVGSTVSNVPGILMKTEENARGTPLAGLAVKITEGSFLVGFSNVDADRARNEELLARREWFDIPVVYANQRRGILALGKGPSGDRVFADAFAAWAKYQPAK
>NZ_LT859959.1|WP_006613407.1|7349952_7351257_+|nicotinate-phosphoribosyltransferase
MTVTDIASRTYNHGWRLDPIVRSLLDTDFYKLLMLQMIREFYPNQQVTFSVINRTKRVRLADVIDEGELRAQLDHARTIRFTKKELIWLAGNTFYGKTHMFSPDFMNWLANFRLPEYELHKADGQYELHFHGPWTHTTMWEIPALAIVNELRSRQAMKGQGRFALDVLFARAKAKLWAKVERLRKLEGLRLSDFGTRRRHGFLWQRWCVEAVKEGLGSSFTGTSNVLLAMDNDLEAIGTNAHELPMVAAALAKNDDDLRFAPYRILDQWRQTYAGNLLIALPDAFGTKAFLRDAPDWVADWTGFRPDSAPPIQAGEEIMAWWKSKGRDPRQKLLVFSDAMDVESIEQIHHRFSDQVRLSFGWGTNLTNDFVGCSPDGSVDLDPISLVCKVTSVDGRPAVKLSDNPEKATGDPAEIARYLRVFGDAGRVRTPVVV
>NZ_LT859959.1|WP_006611151.1|7360067_7360943_+|acyl-CoA-thioesterase-II
MSKGLIDLISILDLEPIEVNLFRGNSPKTSWQRVFGGQVIGQAMMAACRTVEGRLPHSLHCYFILPGDPQVPIIYQVERLRDGKSYATRRVTAIQHGNAIFSIMVSFHSDEESAFNHQDKMPDVPPPEKLTAEEISKQPMFQEVFQRMPDFIRRYYESDRPIELRPVELNRYFGEKIEDGRIHVWIKTAAKLPDDPALHMCALAYASDFSLLDAVMARYGRTLFDKRMMPASLDHAMWFHRPFRADEWLLYAQDSPSAQGGRGLTRGSIFKPDGTLVASVAQEGSIRERRS
>NZ_LT859959.1|WP_006611150.1|7360948_7361824_-|DUF4339-domain-containing-protein
MSNRSWYYAAQGQQQGPISEDELRDLIARSVVTAETLLWSDGMAGWEKAGRIPGLMSGVPSMAPGAPPAFNTEAAAPSGALAVKLDTWGFFGRTLLYVFGQFLVVVTPWTAVYLYRYVIERMQVPGRPNLGFTGQPLDIWYVFIAMGVLTYLGFSSSVILSLISTIAPAFLGWMVLRWVFTKLTSNGEPLPVRFEGNPLAYVGWYLLLLVSCISIIGWAWVLTAWMRWICRNVQGSRRELVFTASGLEMLWRTLAVSIASMFIIPIPWLLRWYSAWYLSQFALVPRGSQPV
>NZ_LT859959.1|WP_006611149.1|7362032_7362371_+|P-II-family-nitrogen-regulator
MKLVVAIIKPFKLDEVRQALTAIGVHGMTVTEVKGYGRQKGHTEIYRGAEYVVNFLPKLRIEIAVNTDIADKAVEVITTHARTGQIGDGKIFVTPIDHARRIRTGETDSDAL
>NZ_LT859959.1|WP_006611148.1|7362454_7363759_+|ammonium-transporter
MGTFVSRCLRAPVALAAAIIFTTPAWAAAPSTIDPADTAWMIVATALVLMMTIPGLALFYSGMVRKKNVLATMAQSLAAVMLISILWVAFGYSLAFVGDGAWIGTLDRAFLAGMGMDSVHPGAKTIPEALFMLYQMTFAIITVALVAGSVADRMRFSAYLVFGVAWFIFVYLPLAHWIWGGGFLAQAGVVDFAGGLVVHLSAGTGGLVAALVMGRRHGYGSENLSPFDLSLAVVGTGLLWVGWFGFNGGSALGANAHAVMAILTTHLAACAGAVTWGALEWSTRRKPSVLGMISGAVAGLGTITPASGYVAPWHGLVIGALAGIICYWACTSLKHRFNYDDSLDVFGVHGIGGLTGTVLAGVFATAAIGGTAGLIEGNPKQLLSQLYGVAVTLVWSGGVTWGLLKLVSAFVPLRVSREQELEGLDISQHGEALQ
>NZ_LT859959.1|WP_006611147.1|7364082_7364421_+|P-II-family-nitrogen-regulator
MKIVMAIIKPFKLEEVRDALTAIGVHGLTVTEVKGYGRQKGHTEIYRGAEYAVSFLPKIKIEVAIPSDQVDKTIDAISSAAKTGQIGDGKIFVISLDHAVRIRTGEADAAAL
>NZ_LT859959.1|WP_006611146.1|7364460_7365963_+|ammonium-transporter
MTFKRPTSAGWVTLAIAGLCVAGLADVAFAEDAPAAAAAAAPVPNKGDVAWMLISSALVLMMSVPGLALFYGGLVRTKNMASVLTQVFAIVAMVGVVWTLYGYSLAFTDGGSMTSWIGGFSKAFLHGVDANSTAATFSNGVVIPELAYFVFQMTFAMITPALIVGAFAERIKFSAVMLFVLLWVTFIYFPIAHWVWYIAAPDDVANAAKALAAAGDAAAKTAAQAKLDEVTGAVGWLAGAGALDFAGGTVVHINAGIAGLVGAVLIGKRTGYGKELMAPHSLTMTMIGAALLWVGWFGFNAGSNLESNGVTALAFVNTMVATAGAALSWLLCEWAVKGKPSLLGICSGAVAGLVAVTPASGLAGPIGALVLGLIVSPICLFFVSTVKNALGYDDALDVFGVHCIGGIIGALGTGILVNPALGGVGITDYTNITGNNAGTYDFATQMLAQIKAVVATLVWSGVGSAILYKVVDVIIGLRPTVEQEREGLDITDHGERAYNY
>NZ_LT859959.1|WP_006611145.1|7366196_7366505_+|PilZ-domain-containing-protein
MAERMKGERVVFERGIPAFMMGIDGTWRRNCTIEDVSETGAKLTVEGSVEGLHLKEFFLLLSSTGLAYRRCELAWVNGDQIGVTFLKQGGKKKANKRAAAEV
>NZ_LT859959.1|WP_006611144.1|7366662_7367385_+|nucleotidyltransferase-family-protein
MPVHPHKAMVLAAGLGLRMRPLTDTMPKPLVRVAGRPLLDHVLDRLAEAGVTEAVVNVHYLADQIIEHTATRSAPRVTISDERDQVLGTGGGVVKALPLLGHAPFFHVNSDTMWIEGVRHNLTRLADAFDPERMDIMLLMAPTASSIGYSGQGDYAMLADGTLRKRREHQVVPFVYAGAAIISPSIFDGAPSGEFSLTKMFDKANEQDRLFGLRLEGVWMHVGTPAAVVEAEEALLESAA
>NZ_LT859959.1|WP_006611143.1|7367727_7370874_+|double-strand-break-repair-protein-AddB
MRVFTVPISAPFLRSVIAALVDGRLVDGFAARSDPARLATATLYLPTRRSLRVAREMFLDELKTDAAVLPRLVALGDIDEDELAFAEDRDAFLGPAPLEIPERLDDLQRRLTLARLVAAWAKTPVSAPLVIGGPASTLALAGDLARLIDDMVTRGVSWDALDALVPDQLDKYWQYSLEFLRIARTAWPAYLQEIERIEPAARRDLLISAEAARLSAHPDGPVIAAGSTGSMPATAKFLLAVAKLPHGAVVLPGLDTDLDEAAWSSIGGAKDRSGRVITPPAVNHPQYAMHLLLKRFGLERRDVVRLVPPGRGGREVLISEAMRPSEATAVWHERLRQFDIAANIAEAMDNLAVVAAPNPEMEALAIAIAMREARHVGKSAALVTPDRALARRVMAALTRWHLTFDDSGGDALLETPAGVFARLAAEAAARGLEPPTLLALLKHPLCRLGRAANGWKQAIETLELALLRGTRPQAGTSGLARDFARFRDEHTKLHQGEASSLHRAEPRARLKPEQLDQAAALITQLQTALAPLENLASPRPQDFAELAARHREVLIALSTDDVGLTTAFTDRDGSALARCFDDLLASGERCGLMAPLSDYPDLFHTAFSDRAVRRPERHGAQLQIYGPLEARLMQADRMIIGGLVEGIWPPAPRIDPWLSRPMRHQLGLDLPERRIGLSAHDFAQLLGAPEVILTHAAKSGGAPAVASRFLHRLEAVAGAERWKAAEARGDTYVRYAEVLDQPREVKPVEQPAPKPPLEARPLRMSVTAIEDWLRDPYTIFARYILRLDPLDPVDMPLSAADRGSAIHEAIGEFTQTFAKELPLHPAHALRVIGEKHFAPLMERPEARALWWPRFQRIAGWFAAWETARREQIGAITAEIRGEIGIPLGPDRTFMLSARADRIEQRAEGTYAILDYKTGQPPTAKQVRMGLSPQLTLEAAILREGGFEGIPAGSLISQLVYVRLSGNNPPGEERILELKINKSDTPQHPDQAAQEARNKLEELIRSFEDPNQGYTSLNLSMWANRYGSYDDLARIKEWSAAGGLGVEGW
>NZ_LT859959.1|WP_006611142.1|7370870_7374341_+|double-strand-break-repair-helicase-AddA
MKAPRPIPQAVRDAQTRASNPAASAFVSANAGSGKTHVLVQRVIRLLLDGVPPEKILCITFTKAAAANMAERVFSTLGHWVTLDDDALDSAIKSTGILTSDKKLRASARKLFASALETPGGLKVQTIHALCTRLLQQFPFEANVPARFSVLDERDQTEMMERANLKVLLDAARAPDSAVGRALQVAMANAADSTFKEVVREACLSRDHFMAWTDGAGRVEVAAQHLGEVLGIGADETLEAIERDILDGPNLPRADWTEIAGRLDGGAKTDQKQADQLRAALAFSGSDQVDEYLRVFLTDDKEPRKSVLTKKFAENNPGLAGLFDAEARRLDRLIEKRRAAVVRDRTEALLQIATAAAANYRREKEERGLLDYDDLIDKTLVMLNRVSAGWVHYKLDRGVDHVLIDEAQDTSPRQWDIVAHIIEEFTSGAGARDGLTRTIFAVGDEKQSIFSFQGADPHEFDARRRQLQKRFTDAGLLFDPVSFTYSFRSGPTVLHAVDHVFREREVYSSIHSPDIGYPIHNALTDAGPSLVELWSLCERDDRKEIEGWRAPFDGVSVTSPEVKLSRRIQAEIKRLIRVGTMTGHDGARRRLSYGDMLILVRRRGNAFDAVIQALKHASIPVAGADRLKLTEHIAIIDLMNLADALLLPQDDLALATALKSPLFGLDDDDLFKLAWKRRGSLREALSAHAADDPRLQAVVRRLQQCERRAAEDTPFAFYAWLLGGGGGRRRILARLGHEANDALDEFLELALSYERKAPASLQGFVAWLRAADTEVKRDMEISRDEVRVMTVHGAKGLEASVVFLVDTTSSPADSQRLRLIHVPHGEREIVVWAGRKADDPQAVAAARVAMLKETEDEYRRLLYVAMTRAADRLVIGGCMPGNMNNVRGGSWYDLMARGLDAAGLQVEVIETEDGPVKRYARAEDIAETAKDEARQLVETAVELPSWLRTAAIEAPGEVAVLRPSDPSADERPVRSGESLAARSLAMQRGTLVHRLLQSLPDVPPERRQEAALRYLLRNAPDWVEDERNRLADGVLNVIGDPRFAAVFAPGSRAEVSIVGRLALAAQPAALVSGQIDRLVVTEAEVLIVDFKTNQQPPSGLSEVPEAYVRQLALYRAVLGQLYPGRTVRAALLWTEAPEFMELPASALDAMLPSQHD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	2767546-2767592	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	6035658-6035704	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	7293005-7293051	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	208080-208126	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	331905-331951	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	2540420-2540466	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	4017575-4017621	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	5534371-5534417	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	7645379-7645425	0	1.0
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	366850-366896	1	0.979
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	1063003-1063049	1	0.979
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	6024751-6024797	1	0.979
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	2603568-2603614	1	0.979
NZ_LT859959_1	1.1\|7358579\|47\|NZ_LT859959\|CRISPRCasFinder	7358579-7358625	47	NZ_LT859959.1	3328067-3328113	1	0.979

1. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 2767546-2767592, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

2. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 6035658-6035704, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

3. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 7293005-7293051, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

4. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 208080-208126, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

5. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 331905-331951, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

6. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 2540420-2540466, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

7. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 4017575-4017621, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

8. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 5534371-5534417, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

9. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 7645379-7645425, mismatch: 0, identity: 1.0

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	Protospacer
***********************************************

10. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 366850-366896, mismatch: 1, identity: 0.979

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctctaggtta	Protospacer
***************************************.*******

11. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 1063003-1063049, mismatch: 1, identity: 0.979

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggcta	Protospacer
********************************************.**

12. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 6024751-6024797, mismatch: 1, identity: 0.979

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcgtcatcgcactttaggtta	Protospacer
************************************.**********

13. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 2603568-2603614, mismatch: 1, identity: 0.979

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgcatcgtcatcgcgctttaggtta	Protospacer
************************ **********************

14. spacer 1.1|7358579|47|NZ_LT859959|CRISPRCasFinder matches to position: 3328067-3328113, mismatch: 1, identity: 0.979

ctaaagcgcgatgagatcaggatgaatcgtcatcgcgctttaggtta	CRISPR spacer
ctaaagcgcgatgagatcaggatgaatcttcatcgcgctttaggtta	Protospacer
**************************** ******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

255405 : 316129

Stx2-converting_phage(25.0%)

transposase,tRNA,protease,integrase

attL 284468:284516|attR 316307:316355

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006611466.1\|255405_255906_+\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA
WP_006611467.1\|256092_257592_+	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA
WP_035645990.1\|257649_259116_-	chemotaxis protein	NA	NA	NA	NA
WP_006611469.1\|259137_259416_-	hypothetical protein	NA	NA	NA	NA
WP_006611470.1\|259594_260095_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_006611471.1\|260210_261149_-	NAD(+) diphosphatase	NA	NA	NA	NA
WP_006611472.1\|261152_261572_-	HIT family protein	NA	NA	NA	NA
WP_006611473.1\|261963_263802_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	8.6e-40	31.9
WP_006611474.1\|263879_264200_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_006609565.1\|264415_265015_+	recombination protein RecR	NA	NA	NA	NA
WP_006609566.1\|265035_265461_+	hypothetical protein	NA	NA	NA	NA
WP_006609567.1\|265554_266937_-	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_006609568.1\|266980_268237_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_006609569.1\|268406_268934_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.2e-20	41.3
WP_006609570.1\|269070_270006_+\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
WP_006609571.1\|270121_270859_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_006609572.1\|271018_273076_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	4.2e-11	65.6
WP_006609573.1\|273095_274250_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_006609574.1\|274310_275156_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_006609575.1\|275510_276206_-	pyrimidine 5'-nucleotidase	NA	NA	NA	NA
WP_006609576.1\|276423_277491_-	DUF1036 domain-containing protein	NA	NA	NA	NA
WP_006609577.1\|277574_278471_-	acetylglutamate kinase	NA	NA	NA	NA
WP_006609578.1\|278544_278916_-	DUF423 domain-containing protein	NA	NA	NA	NA
WP_006609579.1\|278912_279575_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_006609580.1\|279715_281581_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_006609581.1\|281577_282045_-	ribonuclease P protein component	NA	NA	NA	NA
WP_006609582.1\|282076_282211_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_006609583.1\|282716_284192_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
284468:284516	attL	NA	NA	NA	NA
WP_035646847.1\|286783_287902_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_035646858.1\|291436_293197_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_006612558.1\|293216_295205_+	conjugal transfer protein TraG	NA	NA	NA	NA
WP_006612557.1\|295215_295644_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_006612556.1\|295779_296307_+	hypothetical protein	NA	NA	NA	NA
WP_006612555.1\|296350_297715_+	MFS transporter	NA	NA	NA	NA
WP_035646840.1\|297990_298956_+	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA
WP_006612553.1\|298952_299276_+	TrbC/VIRB2 family protein	NA	NA	NA	NA
WP_006612552.1\|299275_299539_+	VirB3 family type IV secretion system protein	NA	NA	NA	NA
WP_006611536.1\|302061_302748_+	hypothetical protein	NA	NA	NA	NA
WP_006611535.1\|302744_303569_+	ATP-binding protein	NA	NA	NA	NA
WP_157681648.1\|303685_303946_-	hypothetical protein	NA	NA	NA	NA
WP_006612294.1\|304035_304752_+	SOS response-associated peptidase family protein	A0A291AUP1	Sinorhizobium_phage	4.1e-38	39.7
WP_083846395.1\|305346_307971_-	hypothetical protein	NA	NA	NA	NA
WP_035648604.1\|309324_310524_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.0e-94	46.9
WP_087877564.1\|311178_311400_-	hypothetical protein	NA	NA	NA	NA
WP_157681649.1\|311396_313049_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-104	42.1
WP_006613318.1\|313119_313467_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.1e-28	53.8
WP_157681650.1\|313463_313853_-\|transposase	transposase	Q76S41	Shigella_phage	3.1e-08	39.5
WP_006610172.1\|314863_316129_-\|integrase	integrase family protein	NA	NA	NA	NA
316307:316355	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1135456 : 1250447

Stx2-converting_phage(47.37%)

transposase,integrase

attL 1155794:1155853|attR 1248773:1248790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157681650.1\|1135456_1135846_+\|transposase	transposase	Q76S41	Shigella_phage	3.1e-08	39.5
WP_087877579.1\|1135842_1136160_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	9.9e-29	54.3
WP_172889736.1\|1136259_1137910_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.0e-104	42.9
WP_139020640.1\|1140093_1141695_+	trehalose-6-phosphate synthase	NA	NA	NA	NA
WP_006615054.1\|1145339_1147439_-	type III secretion system export apparatus subunit SctV	NA	NA	NA	NA
WP_035648614.1\|1147454_1147877_-	hypothetical protein	NA	NA	NA	NA
WP_006615056.1\|1147879_1148410_-	hypothetical protein	NA	NA	NA	NA
WP_035648617.1\|1148443_1149337_-	hypothetical protein	NA	NA	NA	NA
WP_006615058.1\|1149453_1149645_-	hypothetical protein	NA	NA	NA	NA
WP_006615059.1\|1149683_1149992_-	hypothetical protein	NA	NA	NA	NA
WP_087877580.1\|1151074_1152274_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.6e-93	46.2
WP_087877582.1\|1153076_1154609_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_006611535.1\|1154605_1155430_+	ATP-binding protein	NA	NA	NA	NA
WP_087877583.1\|1155788_1155935_-	hypothetical protein	NA	NA	NA	NA
1155794:1155853	attL	NA	NA	NA	NA
WP_006611429.1\|1156017_1156404_-\|transposase	transposase	NA	NA	NA	NA
1155794:1155853	attL	NA	NA	NA	NA
WP_035646313.1\|1156631_1156952_-	hypothetical protein	NA	NA	NA	NA
WP_087877719.1\|1157074_1157716_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_087877584.1\|1158203_1158425_-	hypothetical protein	NA	NA	NA	NA
WP_172889738.1\|1158421_1160073_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.8e-104	42.7
WP_087877585.1\|1160142_1160490_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.7e-29	54.7
WP_157681659.1\|1160486_1160876_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	7.0e-08	44.4
WP_006614046.1\|1161580_1163029_-	DUF1521 domain-containing protein	NA	NA	NA	NA
WP_087877587.1\|1163969_1164206_+	hypothetical protein	NA	NA	NA	NA
WP_087877595.1\|1164292_1165234_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	1.7e-15	22.9
WP_157681660.1\|1165214_1165601_-	TIR domain-containing protein	NA	NA	NA	NA
1164844:1165543	attR	NA	NA	NA	NA
WP_157681661.1\|1167246_1167429_+	hypothetical protein	NA	NA	NA	NA
1164844:1165543	attR	NA	NA	NA	NA
WP_087877591.1\|1168616_1169060_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_035646282.1\|1169874_1170078_+	hypothetical protein	NA	NA	NA	NA
WP_087877558.1\|1170875_1172075_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.8e-94	46.2
WP_087877593.1\|1173664_1175443_-	phosphodiesterase	NA	NA	NA	NA
WP_035647011.1\|1178342_1180040_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_006612810.1\|1180124_1180445_+	hypothetical protein	NA	NA	NA	NA
WP_172889740.1\|1183099_1183975_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_035646313.1\|1184097_1184418_+	hypothetical protein	NA	NA	NA	NA
WP_006610111.1\|1184551_1185007_-	hypothetical protein	NA	NA	NA	NA
WP_006610112.1\|1185377_1186163_+	hypothetical protein	NA	NA	NA	NA
WP_006610113.1\|1186175_1186682_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_157681650.1\|1187605_1187995_+\|transposase	transposase	Q76S41	Shigella_phage	3.1e-08	39.5
WP_006613318.1\|1187991_1188339_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.1e-28	53.8
WP_157681662.1\|1188409_1190062_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	6.9e-105	42.9
WP_087877564.1\|1190058_1190280_+	hypothetical protein	NA	NA	NA	NA
WP_087877595.1\|1190442_1191384_+\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	1.7e-15	22.9
WP_157681709.1\|1191455_1192391_-	hypothetical protein	NA	NA	NA	NA
WP_087877558.1\|1193240_1194440_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.8e-94	46.2
WP_087877597.1\|1194523_1196284_-	hypothetical protein	NA	NA	NA	NA
WP_006612805.1\|1200625_1200781_-\|transposase	transposase	NA	NA	NA	NA
WP_006611535.1\|1202470_1203295_-	ATP-binding protein	NA	NA	NA	NA
WP_087877582.1\|1203291_1204824_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_006613087.1\|1207328_1209422_+	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_139020651.1\|1209886_1211623_+	sensor histidine kinase	NA	NA	NA	NA
WP_006613090.1\|1211625_1212987_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_006613091.1\|1213930_1214848_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_006611429.1\|1215205_1215592_+\|transposase	transposase	NA	NA	NA	NA
WP_035646825.1\|1215987_1216227_+	hypothetical protein	NA	NA	NA	NA
WP_006612544.1\|1216257_1216362_-\|transposase	transposase	NA	NA	NA	NA
WP_157681663.1\|1216552_1218052_-	hypothetical protein	NA	NA	NA	NA
WP_087877722.1\|1220296_1223551_+	hypothetical protein	NA	NA	NA	NA
WP_006610927.1\|1226380_1226578_-	DUF4102 domain-containing protein	NA	NA	NA	NA
WP_006610928.1\|1227207_1227435_-	hypothetical protein	NA	NA	NA	NA
WP_157681664.1\|1228390_1228546_+	hypothetical protein	NA	NA	NA	NA
WP_087877601.1\|1230343_1230691_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	8.9e-31	56.6
WP_087877602.1\|1230687_1231077_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_006611535.1\|1231615_1232440_-	ATP-binding protein	NA	NA	NA	NA
WP_087877582.1\|1232436_1233969_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_087877603.1\|1235172_1238595_+	hypothetical protein	NA	NA	NA	NA
WP_087877604.1\|1239462_1242744_+	hypothetical protein	NA	NA	NA	NA
WP_087877595.1\|1242815_1243758_-\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	1.7e-15	22.9
WP_035646313.1\|1243985_1244306_-	hypothetical protein	NA	NA	NA	NA
WP_172889740.1\|1244428_1245304_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_157681665.1\|1247990_1248380_+\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	7.0e-08	44.4
WP_006613318.1\|1248376_1248724_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.1e-28	53.8
WP_157681666.1\|1248794_1250447_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.9e-103	42.3

DBSCAN-SWA_3

1266426 : 1355747

Stx2-converting_phage(57.89%)

transposase,integrase

attL 1262491:1262508|attR 1341365:1341382

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1262491:1262508	attL	NA	NA	NA	NA
WP_087877558.1\|1266426_1267626_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.8e-94	46.2
WP_157681667.1\|1268064_1268409_+	hypothetical protein	NA	NA	NA	NA
WP_172889740.1\|1268438_1269314_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_087877582.1\|1270487_1272020_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_006611535.1\|1272016_1272841_+	ATP-binding protein	NA	NA	NA	NA
WP_139020716.1\|1274289_1276374_-	hypothetical protein	NA	NA	NA	NA
WP_006615138.1\|1278098_1278359_+	hypothetical protein	NA	NA	NA	NA
WP_087877610.1\|1280848_1281214_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_087877611.1\|1281267_1281561_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.8e-29	64.0
WP_087877580.1\|1284653_1285853_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.6e-93	46.2
WP_157681655.1\|1288188_1289841_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.8e-103	41.7
WP_006613318.1\|1289911_1290259_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.1e-28	53.8
WP_157681650.1\|1290255_1290645_-\|transposase	transposase	Q76S41	Shigella_phage	3.1e-08	39.5
WP_006615047.1\|1294517_1294871_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.2e-30	57.3
WP_006615046.1\|1294867_1295761_-\|transposase	transposase	NA	NA	NA	NA
WP_087877595.1\|1296139_1297082_-\|transposase	IS630 family transposase	A0A1V0SDF8	Indivirus	1.7e-15	22.9
WP_157681668.1\|1297344_1297527_-	hypothetical protein	NA	NA	NA	NA
WP_006611535.1\|1297718_1298543_-	ATP-binding protein	NA	NA	NA	NA
WP_087877582.1\|1298539_1300072_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_087877601.1\|1301879_1302227_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	8.9e-31	56.6
WP_087877612.1\|1302223_1302625_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_006615130.1\|1302861_1303788_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_035648664.1\|1306056_1307361_+	C4-dicarboxylate transporter DctA	NA	NA	NA	NA
WP_139020718.1\|1307608_1308346_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_006610675.1\|1311796_1312486_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.0e-17	25.8
WP_006615135.1\|1315854_1316298_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_157681669.1\|1316314_1316491_-	hypothetical protein	NA	NA	NA	NA
WP_087877613.1\|1318449_1318800_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.4e-37	63.2
WP_172889744.1\|1318796_1319168_-\|transposase	transposase	NA	NA	NA	NA
WP_006613267.1\|1320165_1321143_-	nodulation protein NodZ	NA	NA	NA	NA
WP_006613273.1\|1325588_1326335_-	response regulator transcription factor	NA	NA	NA	NA
WP_006613274.1\|1326815_1327568_-	hypothetical protein	NA	NA	NA	NA
WP_087877614.1\|1327690_1327912_-	hypothetical protein	NA	NA	NA	NA
WP_157681670.1\|1327908_1329561_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-102	41.5
WP_006613318.1\|1329631_1329979_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.1e-28	53.8
WP_157681650.1\|1329975_1330365_-\|transposase	transposase	Q76S41	Shigella_phage	3.1e-08	39.5
WP_087877615.1\|1331599_1332701_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-42	39.2
WP_085962747.1\|1334104_1335190_-	GDP-mannose 4,6-dehydratase	M1HXY1	Acanthocystis_turfacea_Chlorella_virus	1.6e-131	62.1
WP_006609529.1\|1337468_1338224_+	porin family protein	NA	NA	NA	NA
WP_035644565.1\|1340071_1341082_+	hypothetical protein	NA	NA	NA	NA
WP_087877617.1\|1344589_1346659_-	hypothetical protein	NA	NA	NA	NA
1341365:1341382	attR	NA	NA	NA	NA
WP_087877618.1\|1347035_1347236_-	hypothetical protein	NA	NA	NA	NA
WP_157681671.1\|1347893_1348265_+\|transposase	transposase	NA	NA	NA	NA
WP_087877619.1\|1348261_1348570_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.5e-29	60.6
WP_006615129.1\|1348595_1348961_+	hypothetical protein	NA	NA	NA	NA
WP_006613285.1\|1352784_1353156_+	hypothetical protein	NA	NA	NA	NA
WP_087877621.1\|1353318_1353720_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_087877622.1\|1353716_1354064_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.2e-30	56.6
WP_087877623.1\|1354133_1355747_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.1e-102	41.9

DBSCAN-SWA_4

1372794 : 1390914

Corynebacterium_phage(28.57%)

transposase,integrase

attL 1380850:1380864|attR 1391237:1391251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087877558.1\|1372794_1373994_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	8.8e-94	46.2
WP_087877584.1\|1374356_1374578_+	hypothetical protein	NA	NA	NA	NA
WP_006613026.1\|1375674_1376322_+	FkbM family methyltransferase	A0A2P0VP97	Tetraselmis_virus	1.1e-10	29.8
WP_172889746.1\|1376410_1376500_+	hypothetical protein	NA	NA	NA	NA
WP_157681673.1\|1376723_1378373_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-103	42.4
WP_087877585.1\|1378442_1378790_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	1.7e-29	54.7
WP_157681659.1\|1378786_1379176_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	7.0e-08	44.4
WP_172889748.1\|1380558_1382628_-	hypothetical protein	NA	NA	NA	NA
1380850:1380864	attL	NA	NA	NA	NA
WP_006611535.1\|1383695_1384520_-	ATP-binding protein	NA	NA	NA	NA
WP_087877582.1\|1384516_1386049_-\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_035648604.1\|1386572_1387772_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	4.0e-94	46.9
WP_006614042.1\|1389693_1390914_+\|integrase	site-specific integrase	B4UTU2	Rhizobium_phage	1.3e-68	38.7
1391237:1391251	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1974736 : 1980979

Yellowstone_lake_phycodnavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006608951.1\|1974736_1975774_-	zinc-binding dehydrogenase	E3SJ82	Synechococcus_phage	3.7e-56	37.7
WP_006608950.1\|1975782_1976706_-	transketolase	A0A0P0YNE1	Yellowstone_lake_phycodnavirus	2.0e-16	31.0
WP_006608949.1\|1976702_1977551_-	transketolase	A0A0P0YMZ3	Yellowstone_lake_phycodnavirus	1.6e-12	36.1
WP_006608948.1\|1977593_1978592_-	GDP-mannose 4,6-dehydratase	A0A0N7KVW3	Yellowstone_lake_phycodnavirus	1.2e-35	35.8
WP_172889750.1\|1978604_1979237_-	SIS domain-containing protein	NA	NA	NA	NA
WP_006608946.1\|1979209_1980148_-	SDR family oxidoreductase	E3T4Y8	Cafeteria_roenbergensis_virus	4.9e-07	28.8
WP_006608945.1\|1980256_1980979_-	nucleotidyltransferase family protein	A0A127AW70	Bacillus_phage	6.9e-09	23.8

DBSCAN-SWA_6

3294453 : 3304106

uncultured_Mediterranean_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006614348.1\|3294453_3295293_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	8.2e-30	35.9
WP_035648203.1\|3295312_3296464_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	8.9e-43	47.0
WP_006614346.1\|3296746_3296980_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.2e-08	55.4
WP_006614345.1\|3297083_3297605_+	twin-arginine translocase subunit TatB	A0A1B1IVT0	uncultured_Mediterranean_phage	5.7e-05	48.9
WP_006614344.1\|3297601_3298423_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.2e-52	46.4
WP_006614343.1\|3298552_3299878_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-97	47.6
WP_006614342.1\|3299974_3300331_+	hypothetical protein	NA	NA	NA	NA
WP_006614341.1\|3300424_3301192_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.7e-38	37.9
WP_006614340.1\|3301229_3301613_-	response regulator	NA	NA	NA	NA
WP_139020697.1\|3301624_3301858_+	hypothetical protein	NA	NA	NA	NA
WP_006614339.1\|3301887_3302535_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-28	50.0
WP_006614338.1\|3302642_3304106_+	LysM peptidoglycan-binding domain-containing M23 family metallopeptidase	Q8SBN9	Clostridium_phage	7.4e-18	40.9

DBSCAN-SWA_7

4569654 : 4578701

uncultured_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006614575.1\|4569654_4570104_-	Hsp20 family protein	A0A1D7SYT7	Cyanophage	1.7e-18	43.7
WP_006614576.1\|4570341_4570572_-	hypothetical protein	NA	NA	NA	NA
WP_006614577.1\|4570835_4572455_-	chaperonin GroEL	A0A240F779	uncultured_virus	1.6e-178	60.1
WP_006614578.1\|4572497_4572812_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.2e-21	55.4
WP_006614579.1\|4573034_4574132_+	trypsin-like peptidase domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	9.7e-23	25.8
WP_006614580.1\|4574272_4575490_+	GGDEF domain-containing protein	G3MA91	Bacillus_virus	2.3e-17	36.0
WP_006614581.1\|4575580_4576984_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_006614582.1\|4577093_4578701_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	4.1e-78	42.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT859959

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection