CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT859958	Brevefilum fermentans isolate CAMBI-1 chromosome I	8 crisprs	DinG,csa3,DEDDh,cas3,csx1,cas10,csm3gr7,csx10gr5,csx19,csx15,csx23,cas6,RT,cas1,cas2	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT859958_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_1

354164-354309

Orphan

Consensus_repeat	Method
TAGAGAGACTGCTTGCCTTTTGCTTCGCTCAGGCACACTCCGCAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT859958_1

>merge|NZ_LT859958|1|354164-354309|CRISPRCasFinder
TAGAGAGACTGCTTGCCTTTTGCTTCGCTCAGGCACACTCCGCAGTCGTAAGGTCATAATTAGATGTCATTGCGAGGAACGAAGCAATCTTAACCTGTAATAGAGAGAGTGCTTGCCTTTTGCTTCGCTCAGGCACACTCCGCAGT

>NZ_LT859958|1|1|354164-354309|CRISPRCasFinder
TAGAGAGACTGCTTGCCTTTTGCTTCGCTCAGGCACACTCCGCAGT	CGTAAGGTCATAATTAGATGTCATTGCGAGGAACGAAGCAATCTTAACCTGTAA
TAGAGAGAGTGCTTGCCTTTTGCTTCGCTCAGGCACACTCCGCAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_087861318.1\|345063_346032_-\|D-cysteine-desulfhydrase-family-protein	unknown	unknown	gnl\|CDD\|179673
NZ_LT859958.1\|WP_087861325.1\|357644_359327_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_157891638.1\|361804_362503_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224931
NZ_LT859958.1\|WP_087863206.1\|354423_356862_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_LT859958.1\|WP_087861331.1\|368113_368653_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_LT859958.1\|WP_087861324.1\|353316_354015_-\|creatininase-family-protein	unknown	unknown	gnl\|CDD\|376872
NZ_LT859958.1\|WP_087861329.1\|363162_364167_-\|dihydroorotate-dehydrogenase-like-protein	unknown	unknown	gnl\|CDD\|236051
NZ_LT859958.1\|WP_087861317.1\|344561_344912_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|376502
NZ_LT859958.1\|WP_157891637.1\|360010_361690_+\|alpha-amylase	unknown	unknown	gnl\|CDD\|200455
NZ_LT859958.1\|WP_087861316.1\|343724_344450_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_LT859958.1\|WP_087861323.1\|352761_353160_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_LT859958.1\|WP_087861321.1\|348237_350136_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011
NZ_LT859958.1\|WP_087861319.1\|346028_347144_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl\|CDD\|367067
NZ_LT859958.1\|WP_087861333.1\|369789_370992_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_LT859958.1\|WP_087861322.1\|350155_351574_-\|sugar-transferase	unknown	unknown	gnl\|CDD\|274398
NZ_LT859958.1\|WP_087861330.1\|364280_367868_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	unknown	unknown	gnl\|CDD\|131231
NZ_LT859958.1\|WP_162287641.1\|368780_369332_-\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_LT859958.1\|WP_157891639.1\|362545_363010_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240033
NZ_LT859958.1\|WP_087863205.1\|351584_352583_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133016
NZ_LT859958.1\|WP_087861320.1\|347155_348160_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl\|CDD\|225224

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_087861318.1\|345063_346032_-\|D-cysteine-desulfhydrase-family-protein	gnl\|CDD\|179673	PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.	3.47138e-147
NZ_LT859958.1\|WP_157891638.1\|361804_362503_+\|isoprenylcysteine-carboxylmethyltransferase-family-protein	gnl\|CDD\|224931	COG2020, STE14, Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones].	2.97992e-14
NZ_LT859958.1\|WP_087863206.1\|354423_356862_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_LT859958.1\|WP_087861331.1\|368113_368653_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	6.22214e-46
NZ_LT859958.1\|WP_087861324.1\|353316_354015_-\|creatininase-family-protein	gnl\|CDD\|376872	pfam02633, Creatininase, Creatinine amidohydrolase. Creatinine amidohydrolase (EC:3.5.2.10), or creatininase, catalyzes the hydrolysis of creatinine to creatine.	1.3958e-50
NZ_LT859958.1\|WP_087861329.1\|363162_364167_-\|dihydroorotate-dehydrogenase-like-protein	gnl\|CDD\|236051	PRK07565, PRK07565, dihydroorotate dehydrogenase-like protein.	2.54683e-177
NZ_LT859958.1\|WP_087861317.1\|344561_344912_-\|50S-ribosomal-protein-L19	gnl\|CDD\|376502	pfam01245, Ribosomal_L19, Ribosomal protein L19.	1.87715e-50
NZ_LT859958.1\|WP_157891637.1\|360010_361690_+\|alpha-amylase	gnl\|CDD\|200455	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_LT859958.1\|WP_087861316.1\|343724_344450_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	1.1445e-82
NZ_LT859958.1\|WP_087861323.1\|352761_353160_-\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	8.04481e-58
NZ_LT859958.1\|WP_087861321.1\|348237_350136_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0
NZ_LT859958.1\|WP_087861319.1\|346028_347144_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	1.05088e-52
NZ_LT859958.1\|WP_087861333.1\|369789_370992_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.63937e-97
NZ_LT859958.1\|WP_087861322.1\|350155_351574_-\|sugar-transferase	gnl\|CDD\|274398	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Members of this family are generally found near other genes involved in the biosynthesis of a variety of exopolysaccharides. These proteins consist of two fused domains, an N-terminal hydrophobic domain of generally low conservation and a highly conserved C-terminal sugar transferase domain (pfam02397). Characterized and partially characterized members of this subfamily include Salmonella WbaP (originally RfbP), E. coli WcaJ, Methylobacillus EpsB, Xanthomonas GumD, Vibrio CpsA, Erwinia AmsG, Group B Streptococcus CpsE (originally CpsD), and Streptococcus suis Cps2E. Each of these is believed to act in transferring the sugar from, for instance, UDP-glucose or UDP-galactose, to a lipid carrier such as undecaprenyl phosphate as the first (priming) step in the synthesis of an oligosaccharide "block". This function is encoded in the C-terminal domain. The liposaccharide is believed to be subsequently transferred through a "flippase" function from the cytoplasmic to the periplasmic face of the inner membrane by the N-terminal domain. Certain closely related transferase enzymes, such as Sinorhizobium ExoY and Lactococcus EpsD, lack the N-terminal domain and are not found by this model.	2.50759e-110
NZ_LT859958.1\|WP_087861330.1\|364280_367868_-\|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase	gnl\|CDD\|131231	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.	0
NZ_LT859958.1\|WP_162287641.1\|368780_369332_-\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	1.98323e-08
NZ_LT859958.1\|WP_157891639.1\|362545_363010_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240033	cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	7.46099e-19
NZ_LT859958.1\|WP_087863205.1\|351584_352583_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133016	cd02525, Succinoglycan_BP_ExoA, ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.	2.00704e-101
NZ_LT859958.1\|WP_087861320.1\|347155_348160_-\|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	5.05025e-54

>NZ_LT859958.1|WP_087861324.1|353316_354015_-|creatininase-family-protein
MKFEDLNWMQVEEYLKTDDRLILVLGACEQHGYLSLMTDVKIPMALAEEASRQSGVLLAPPLNFGCSPYFLTYPGTISLRLHTFLDVVEDILRSLYGAGFRRILILNGHGGNTPVKTHLVELLNQLPDLLLSWYAWWTTDTVAEIAKKYQLDSEHGSWMEAFDFTTVTELPDGIKPIPDVGYALLGKAATREIYQDGVYGGAYKADPAIMDELFAACLADVLNLLNFAEERR
>NZ_LT859958.1|WP_087861323.1|352761_353160_-|RidA-family-protein
MSTPHHEKNIVTTDRVPKAIGPYSVGVTTGTLVFTAGQLPIDVATGKIVEGGIQAQTRQALINLQAVIEAAGSSLDQVIKTTVFLQDMGEFALMNEVYASFFTSNYPARSAVQVAALPLNAAVEIEAVALLP
>NZ_LT859958.1|WP_087863205.1|351584_352583_-|glycosyltransferase-family-2-protein
MQTSIIVPCYNEKATIHILLDALYEQTYPRDAMEVVIADGMSNDGTLDAIQAWKNQHPDLSVTVVENHARVIPAALNTAIKASKGAIIVRLDAHSRPDPYYVERSVTALAEGRGQNVGGVWDIQPGSDHWMARSIAVAAGHPIGVGDAKYRYSDQAGYVDTVPFGAFTRELLTQVGLFDETLLSNEDYEFNARIRQAGGKIWFDPQIRTVYYARQNLAELARQYWRYGFWKVHMLKRYPSTIRWRQALPPLFVAGLVVLILLSPFTRWAGYGLAGILAVYSITLFLAGLHLSVKHKTVVYVLGAPLAIACMHLSWGAGFLWGMISPQQRKTG
>NZ_LT859958.1|WP_087861322.1|350155_351574_-|sugar-transferase
MNTISRPKRWQMRTSERVAILIIGDFLVAALALFFALYIWAAGDAWMKFSLEFIIDRPPLWYFLLPFMWIILLVELYDIHRASNHRETFKGIGLATLIFTLIYLLLYFTSAPNSLPRRGVSVFIFLAAVFTLVWRLIYIRMFTAPHLLRRVLIIGAGNAGQTLIDVIADLWPPPFFTVGLVDDDPKKLGAEIGKYSVLGNSHQLLDLINEKQVTDLILAISGEIKGSMFQAILSAQEMGINLSPMPQVYEELLSRVPIFLLESEWIVRSFVEKTHTSTFYHLSKSLLDFTGGLVGSLIMTIFFPFISLAILLESGFPIFFSQERLGRGGQPFKIFKFRTMERDAERDGFARMAEENDQRVTKVGRFLRKTHLDELPQFINVLRGEMSMVGPRAERPEMVVNFQKEIPFYRARLLVKPGITGWAQINYGYAGTVKETAIKLEYDLYYIEHRSLLMDISIILRTIGTVLGFKGQ
>NZ_LT859958.1|WP_087861321.1|348237_350136_-|polysaccharide-biosynthesis-protein
MHIFGRNVRNRYLFFGDIFLSLVAVLASYVVRLELIAIFPTYQYSMLWMVAMAIIIKPLMYYLFGIYRHVWRYASIHELVLIFSAVTTASMILSAVMIGLRAVNTFYGFPRSVLVIDWLFSMGFIGGSRFLFRVLAETASLSNDRSYPHSKRRKRVLVVGAGDAGAMVVREMLKNQQLAMMPIGFLDDDPSKQNSKIHGVQVLAPLDDIDQVLKKHYVDEVVVAIPSASGKVVRKVTEVCQLRNIAFRTMPGIYELLGGVVNVSRLREVDIFDLLRREPVRIETDALGDVLANRVVMVTGAGGSIGSELCRQIAQVYPRRLLALGHGENSIFSVLSDLKESFPHLEVIPLIADVRDLPRLEVIFNRWKPEIVFHAAAHKHVPLMETNIEEAVTNNVIGTQNVVNCALTHDVLRLVMISTDKAIRPINVMGATKRIAEMLVLNAARLHQRAFTVVRFGNVLGSRGSVVPRFKRQIAAGGPITITHPDMERYFMTIPEAVHLVLQASTMSTGGESYILDMGQPVRIVDLAEDMIRLSGLEPGRDIEIVFTGIRPGEKLTEDLWDLGFAYSPTIHPDINRVDSEEVLSTEKLNAIVEQLAQFAREGKPDAIQALLSEAIPGAAIQSMEPTLDLLA
>NZ_LT859958.1|WP_087861320.1|347155_348160_-|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MQYLTPQAWDRFIESHADAHILQTRPWGELKSAYGWKPYYVQNQDLGALVLFRRLPLGLSIGYLPRGPVGNGDWAAFWTEIDALCRKERAVFLRVEPDIWEPLPPGFAQERMPGFVQAHQTIQPPRTILIDLQQDDDALLKSMKPKTRYNIRLAQRKDVIVQPSDDIGSFHRMMLTTGERDAFGVHSRDYYQRAYDIFAPLDACVLLIAEFRGQPLAGLMVFAHGSTAWYFYGASTNEERNRMPSYLLQWEAIQWAKRKGCTVYDLWGVPDYAEEELEEAFLDRSEGLWGVYRFKRGFGGQLCRTIGAWDKVYQPLLYKLYQLWSERGQPQSAT
>NZ_LT859958.1|WP_087861319.1|346028_347144_-|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MKRVEIHSAEQWNTAIAHLEGAHVLQTWQWGQVKMRFGWEAYPLIWQDASGEVSAAALLLLRKLTLAGFGLPLSVGYIPRGPLLKWDQESLRRQVLEDLEEFTRKKRSIFLKIDPDLPLGFGIPGEISAEDHQVGLAVQNELIARGWVFSEEQIQFRNTVTVDLTGTEDELLMRMKSKTRYNIRLAGRRGVRVRPGGSEDIDLLYQMYAHTALRDDFTIRSKAYYQVVWDTFFKAGLAEPLIAEVEDQPVGAVVIFRFGNRALYMHGMSLDAHREKMFNYLLQWEAMLRARAAGCQRYDLWGAPDEFTEDDPLWGVYRFKDGFGGRVERTLGAWDFPVHSLLYTGYCQILPRILQVMRTRGKKSVQRSLST
>NZ_LT859958.1|WP_087861318.1|345063_346032_-|D-cysteine-desulfhydrase-family-protein
MKQRLKLAHLPTPIEALPHLSAELMGPNIITKRDDQTGLAFGGNKTRKLEYLIYEAQAAGADTLVTAGAVQSNHCRQTVAAAARLGLNCTLVLFGDPPSPPDGNHFLYYLLGAELVFTERPRVQDKLEETFQNLRKAGKKPYLIPYGGSNPTGALGYVNAMLELAEQGCTPDWIVFPSSSGGTQAGMLLGARMSGFHGQILGISVDEPAELLQSRVAELASQAARTMDEPYTFTAGEVLVNDEYIGDGYAIMGAREIEAIRLFAEHEALLLDPVYTGRAGAGLIDLVRKGFFKPEDTVLFWHTGGGPALFASKYQNRLIDLA
>NZ_LT859958.1|WP_087861317.1|344561_344912_-|50S-ribosomal-protein-L19
MDKTELLKSVEAPANSNIPQLSPGDAVSVYLKIKEGERERIQVFKGTVLFVRGRGNDATFTVRRIASNGIGVERTFLMRSPRIEKVEVERHSKVRRARLYFLRDRTGKAARLKQRF
>NZ_LT859958.1|WP_087861316.1|343724_344450_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MALLRQPLIGITSGLVNNSSEVPVCQLADAYIRAVLRAGGTPLVIPLGLDERRLTALLDVLDGVIFSGGGDIDPQRYNGDPHPEVYGISPERDELEFFLVQRLLEMDKPLLTICRGTQVLNVALGGSLYTHIADQLPGALKHDWFPKFSRDRLSHSVTFVSDSRLNQIYGTDEIQVNSLHHQGISRLGEGLVAAGVAPDGLMEALEVPSASFAVGVQWHPECLTDDEGSQNLFQAFVQACQ
>NZ_LT859958.1|WP_087863206.1|354423_356862_-|leucine--tRNA-ligase
MYKPAQIEPKWQERWERDGLYHADIDPHRPKFYALTMWPYPSGDLHIGHWYAMSPSDARARFKRMQGYNVMFPMGFDAFGLPAENAAIQHGIHPQQWTSQNIEVMRQQLKSMGAMIDWRREATSSDPSYYHWTQWFFIQFYKNNLAYQKEAQVDFCPHCNTTLAREQVHGDDRHCERCGTPVIKKNLVQWFFRITNYADELLDFSTIDWPEQVQTLQTNWINRSEGAAVVFKTENGDEIEVFTTRPDTLWGATFMVLAPEHPLVKKLTTPEQAQAVAEYRAQAERMGEIQRETADREKTGVFTGGYAINPVNGERIPVWTADYVMMGYGTGAIMAVPAHDQRDFEFARKYNLPVVVVIQPPDEHPLVADEMTMAVPAVGEMVNSGPLTGTPGDVAFQRAIAYIEEKGVGHGAVSYRLRDWLISRQRYWGAPIPIIHCSHCGAVPVPEAELPVELPMDVEWLPTGESPLKLHPTWRFTTCPQCGGAAERETDTMDTFMCSSWYHLRYLSPHYDQYPFDPEEYDYWMPVDTYTGGIEHATMHLIYTRFFHKACRDLGITRSAEPMMQLRNQGMVLGEDHEKMSKSRGNVVAPDDLVAAYGADTVRAYLMFFARWELGAPWNSSGIEGSIRWLRKVWFTLLEPSEVGKRPGEEDLRKLRRKAHQTLASVTHDFENLNFNTIVSSLMELNNEMMLAKGAGAFGTEAWKEAESLYLRMLAPVCPHIAEELWERTGHDYSVHLQPWPEVDAEAAREDEITLVVQVNGKLRDRLIVPVSISEADAKTAALESDAVQVYLQGKPPKKVIYVPGKLVNIVV
>NZ_LT859958.1|WP_087861325.1|357644_359327_-|hypothetical-protein
MIKKHYPLILIITMLLIATLACSLGGKKSPKLGETYRSEAGGYSLQQVPGYDFEEFWGMTMMSPTDADERFGPMIMAYGLPNDDNLSLQGLMDEMTQQDDEVSAEYSKPKKTKVGGVEGLLVEFKGIEDGQKLKGKLFVALPYPEQTFYMTVLSPEDRWKEIEPIYDAVLKSVSFFEADLTDLDFDLEDFEFDLEDFEFEEEIEGFDETLEDILVPSTQVIRQWAVLAEASSEYSSDDYSALQATGAPDVDYCEENPLAWAPLSGDTEEYLVLYYDVPVIPTELVIIQSHNPSQVVEIQFIDTDGETWTLWYGEPERISTCPDEWTHTIELDEVFYTDTVVIWVDQSVLGLGWAEIDAVELVGYPMGSTSTTVQEEPEVQIPSLLDIPENFSGLMAGPVYQGYASIVIGETKEADLDRIMTIAGRESTDSWKPRESHKQTYLYDMPWSGMTAYISVTVDGVVYKKNVTSGKYPDDYALPTVNNENYEILKGIYDRDKVIPYEVMANLLQSPGFIREQWLREDDGKIVSTYFWHSADGYVLSGIFYDGLLTGMAGLSYYQP
>NZ_LT859958.1|WP_157891637.1|360010_361690_+|alpha-amylase
MKISVRILFLLLTLVVIGCAGCHSTALPEPTSQPTLNPTPTHTEPPPDPEPQAWWRDIVFYEIFVRSFKDSDGDGIGDFQGIIQQLDYLNDGDPNTHDDLGIQGIWLMPINPSPSYHGYDVMDYYSVNPDYGTMDDFKQLLAEAEKRGIKIIIDLVINHTSTQHPWFQAAQDPTSEFHDWYVWSAEHPQIPGPWFQNAWHRNSVNNLYYYGIFWGGMPDLNFDNPAVSDEIMSITKFWLEEVGVHGFRVDAARYLYADGVSQQDTKQTIQWFEDWRAFYKAINPSAFTVGEVWTDLQVTARYGDGMDSLFMFDLAEDIINGVYVPNPRRIITSYQDIQSFFPEGDFSTFLSNHDQQRVMSFFEGNANKAHVAAFVYLTGPGVPFIYYGEEIGMAGNKPDELLRTPMQWTGGPGAGFTSGTPWEPVNQDYAQVNVAAQDTAPDSLLHQYRTLVHLRNQYSALRTGAYLPFTASCQQLYPILRVEDDQVLILLANLSRKELEGCTISITESPLSGEYDVEMLYGDGVFSSFNFGEDGSLTEYSLPEIIQPFQQFILQLNES
>NZ_LT859958.1|WP_157891638.1|361804_362503_+|isoprenylcysteine-carboxylmethyltransferase-family-protein
MEDNTKIITLRMMIMLLVFIVVAPLLPLLISWRWSWWEAWVYAAISFVGFVVSRYLAGRRHPELLVERGQYLQNPNPEPWDQYLSPLSAWGGVLILVAAGFDMRWGPSAQFGLVIKIIAIILVLGGYALGAYALIVNQYFSGLVRIQVEHGHHVINSGPYRWVRHPGYVGALVTYLSIPFLLDSWWALLPAFLLSIIIFLRTFLEDQFLQEKLPGYKRYTKEIRYRLIPWIW
>NZ_LT859958.1|WP_157891639.1|362545_363010_+|NUDIX-domain-containing-protein
MNKAVLFWLWKVLPLPKFVRAAMVWIGNPKFLVSVDALIFNAENACLLFNHPYRQDYTWGLPGGYLKRGEHPQSAIQREVFEESGLEIQVIKLLDTTMSEKHRRITLIYLAEIVGEVKFTPSVEVSEFGFFPADHLPDLFPNQKALIQKYSRQP
>NZ_LT859958.1|WP_087861329.1|363162_364167_-|dihydroorotate-dehydrogenase-like-protein
MTDLKTHYLGLELKNPLVAAASGLSKKVSTVKKMEDAGISAVVLYSLFEEQITHDSLAFNYFMEHGTERFAESLSYFPNLDRYNVSPDEYLEKIRQNKEAVDIPIIASLNGVSNSGWVEYAQKMVQAGADALELNTYYLPTNSDMKSVELEDNLIELVKAVCTHVQIPVSVKLSPYYTALPNLACRLADAGAQGLVLFNRFIQPDIDIEEMEVDPTLNLSTSAELLLPLRWTAILFGQVKADLALTSGVHTGVDLIKAVMAGANVAMVASEFVANGVGRATEMLAEMSTWMSAYDHPSVERMRGSMSQKHVKNPAVFERANYMKALQSFDNKMP
>NZ_LT859958.1|WP_087861330.1|364280_367868_-|pyruvate:ferredoxin-(flavodoxin)-oxidoreductase
MTRQMVMTDANEATAWVAYRLNEVIAIYPITPSSGMGEFADEWAAEGIKNIWGTVPDVTEMQSEGGAAGAVHGALQAGGLTTTFTASQGLLLMIPNMYKIAGELTSTVFNVSARSIAAQALSIFGDHSDISAVRSTGFALLASDSVQQAQDMALIAQAATLRSRVPFLHFFDGFRSSHEINKIERLDEDDLRALIDDELVAQHRRRALSPDRPVLRGTAQNPDVFFQGRETVNPFYAKTPDIVQEVMDQFAERVGRSYHLFDYVGSPDAEKVIVVMASGVETAQETAKALIDAGEKVGVIAVRLYRPFSTKHLMQALPSTVKVIAVLDRTKEPGAGGEPLYLDVVNAVKEGFDLGLAPFKTLPRVIGGRYGLSSKEFTPAMVKGIFDEMDKETPKNHFTVGIIDDVGHTNLDWDPTYEILKRDVIQAMFFGLGADGTVSANKNSIKIIGEETENFAQGYFQYDSKKSGAVTVSHLRFGPEPIRAPYLIAENEASFVACHQFSFLEKYDMLKYARPKGIFLLNSLFGPDEIWDQLPAKVQEALIKKDLQFYIIDAYDVANKTNMGQRINTIMQTCFFAISGILPREQAIDHIKKSIEETYGKRGEAVIKQNFLAVDSALENMYKVEIPDKVTSTIPMKPAVPPEAPEYVREVLGKIIDRDGDNVRVSEMPVDGTFPTATTQWEKRNVALEIPVWEPDLCIQCGKCAFVCPHAAIRTKVYQDSYLAETPETFKHTNAKFREFRDGWAFTVQVAPEDCTGCGLCVENCPAKDKENPSRKAINMAPQPPIREQEAENWAFFSSIPYPDRKSFSPHTVKNSQLLEPLFEFSGACAGCGETPYLRLVTQLFGDRMVVANATGCSSIYGANLPTTPYAVNADGRGPAWSNSLFEDNAEFGLGMRLTIDKFIEYGHELLERLADQVGRDLVDAIINASQKTEEELEAQRGRVEQLKSILEKLDLPEARNLLSIADYLVRKSVWIIGGDGWAYDIGYGGLDHVLASGRDVNILVLDTEVYSNTGGQSSKATPRAAVAKFAANGKNLPKKDLGMMAMSYGYAYVARIAMGANDRQTLQALREAEAYPGPSLIIAYSHCIAHGINMRLGLQQQELAVKSGVWPIYRYNPELGAQGENPLIIDAKEPTIPVEDYAYNETRYRMLLQSNEARAEQLMINAKQDAASRWTLYQQMADMHYKKPDAETEE
>NZ_LT859958.1|WP_087861331.1|368113_368653_-|NUDIX-hydrolase
MNHQELYREKLYSGPIFDLAKVRMRLPSGRERDYDLVEHGNSVTIVPVDASGQVYFVDQHRVGSNSMLLELPAGMLDAGEDPLEGARREIREEIGMDAEQIIPLGGFYLAAGYSDEYLFAYLAKGLFASPLDPDEDEFINLVTMPAEAALEKAFAGEFHDGKTLAALFLAMPYIKSNEK
>NZ_LT859958.1|WP_162287641.1|368780_369332_-|LysM-peptidoglycan-binding-domain-containing-protein
MPASKAPELSDDDLKTTPIVIVTSPSGGLTGGVPPVTGTVEPGYPLEAEQPTEDFFSPTATLAPTIMVPTLTRPEEYTLREGEFPFCIARRFDLDPAALLNLNNLSPDTLVAPGTVLKIPQTGSWGEGDRSLQPHPTTHTISAGETIFSIACSYGSVSPEAIIVVNGLEEPYHLTAGQTLEIP
>NZ_LT859958.1|WP_087861333.1|369789_370992_+|trypsin-like-peptidase-domain-containing-protein
MNTMKLKIWLIIGLVIVSTLACAIPGVTTSFTLNTELDDKFPEIHIEPPTIEEIIPPNTWVIPDSVLLQDNLVQLYESVSPGVVSIQVYSDLGSGLGSGFVIDQEGHIVTNYHVVEVAREVEVHFPSGLKVYGEVIGVDLDSDLAVIKVDVDPDDLHPLPLGDSDQLRVGQTVVAIGNPFGLSGTMTVGIVSARGRTLESIRQTEGGAFFTAGDLIQTDASINPGNSGGPLLNLNGEVIGINRALRTSGNGIFSTSSNTGIGFAVSSNIVKRVVPTLKKGLTFDYPYLGLSSLESLTLANAELLGLPTANGAYVLDVVPGGPADKAGLKAGSQATQVAGLYAGGDLIIRVDNVDVLEFSDLLSYLMLNKNPGETMDMVILRNGEEKTITITLGKRPSSAP

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Crispr_ID: NZ_LT859958_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_2

530149-530317

Orphan

Consensus_repeat	Method
ATGGCGGCGGGATCTACA	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT859958_2

>merge|NZ_LT859958|2|530149-530317|PILER-CR
GGCGGCGGGATCTACATCCCTTTTGGCAGCCCCAGCCTGGACAATGTGACGATCAGTGACAACAAAGCAAATTATGGCGGCGGGATGTTCACCAAAAATTGCAACCCTACCCTAATTGATGTGACGATCAGAGAGAACTCGGCAACATTTAATGGCGGCGGGATCTACA

>NZ_LT859958|2|1|530149-530317|PILER-CR
GGCGGCGGGATCTACATC	CCTTTTGGCAGCCCCAGCCTGGACAATGTGACGATCAGTGACAACAAAGCAAATTAT
GGCGGCGGGATGTTCACC	AAAAATTGCAACCCTACCCTAATTGATGTGACGATCAGAGAGAACTCGGCAACATTTAATGGCGG
CGGGATCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_087861455.1\|517964_519113_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340893
NZ_LT859958.1\|WP_087861458.1\|521548_522988_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|180119
NZ_LT859958.1\|WP_087861456.1\|519196_520522_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
NZ_LT859958.1\|WP_087861472.1\|540138_540432_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|224174
NZ_LT859958.1\|WP_087861466.1\|531877_533098_+\|benzoate/H(+)-symporter-BenE-family-transporter	unknown	unknown	gnl\|CDD\|379912
NZ_LT859958.1\|WP_087861469.1\|536909_537914_+\|diphosphomevalonate-decarboxylase	unknown	unknown	gnl\|CDD\|225941
NZ_LT859958.1\|WP_087861470.1\|537984_539061_+\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|308008
NZ_LT859958.1\|WP_087863212.1\|523098_524034_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|223614
NZ_LT859958.1\|WP_157891653.1\|542606_542825_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861463.1\|528118_528565_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT859958.1\|WP_087861460.1\|525597_527256_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_LT859958.1\|WP_087861473.1\|540469_542506_-\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_LT859958.1\|WP_087861471.1\|539084_540092_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|379311
NZ_LT859958.1\|WP_087861474.1\|543043_544252_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_LT859958.1\|WP_087861459.1\|524213_525302_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238641
NZ_LT859958.1\|WP_087861457.1\|520598_521540_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320684
NZ_LT859958.1\|WP_162287644.1\|533140_536083_-\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173807
NZ_LT859958.1\|WP_087861462.1\|527597_528113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861468.1\|536422_536731_+\|DUF4282-domain-containing-protein	unknown	unknown	gnl\|CDD\|379475
NZ_LT859958.1\|WP_087861461.1\|527257_527611_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_087861455.1\|517964_519113_-\|MFS-transporter	gnl\|CDD\|340893	cd17335, MFS_MFSD6, Major facilitator superfamily domain-containing protein 6. Human Major facilitator superfamily domain-containing protein 6 (MFSD6) is also called macrophage MHC class I receptor 2 homolog (MMR2). It has been postulated as a possible receptor for human leukocyte antigen (HLA)-B62. MFSD6 is conserved through evolution and appeared before bilateral animals. It belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.64913e-54
NZ_LT859958.1\|WP_087861458.1\|521548_522988_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|180119	PRK05500, PRK05500, bifunctional orotidine-5'-phosphate decarboxylase/orotate phosphoribosyltransferase.	7.81605e-144
NZ_LT859958.1\|WP_087861456.1\|519196_520522_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	8.79042e-09
NZ_LT859958.1\|WP_087861472.1\|540138_540432_+\|acylphosphatase	gnl\|CDD\|224174	COG1254, AcyP, Acylphosphatases [Energy production and conversion].	2.64469e-29
NZ_LT859958.1\|WP_087861466.1\|531877_533098_+\|benzoate/H(+)-symporter-BenE-family-transporter	gnl\|CDD\|379912	pfam16983, MFS_MOT1, Molybdate transporter of MFS superfamily. MFS_MOT1 is a family of molybdenate transporters. Molybdenum is an essential element that is taken up into the cell in the oxyanion molybdate. Molybdenum is used in the form of molybdopterin-cofactor, which participates in the active site of enzymes involved in key reactions of carbon, nitrogen, and sulfur metabolism.	2.14477e-25
NZ_LT859958.1\|WP_087861470.1\|537984_539061_+\|site-2-protease-family-protein	gnl\|CDD\|308008	pfam02163, Peptidase_M50, Peptidase family M50.	7.02585e-52
NZ_LT859958.1\|WP_087863212.1\|523098_524034_-\|aspartate-carbamoyltransferase	gnl\|CDD\|223614	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism].	2.45129e-134
NZ_LT859958.1\|WP_087861463.1\|528118_528565_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.75552e-15
NZ_LT859958.1\|WP_087861460.1\|525597_527256_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_LT859958.1\|WP_087861473.1\|540469_542506_-\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_LT859958.1\|WP_087861471.1\|539084_540092_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|379311	pfam13646, HEAT_2, HEAT repeats. This family includes multiple HEAT repeats.	1.58083e-07
NZ_LT859958.1\|WP_087861474.1\|543043_544252_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.4476e-146
NZ_LT859958.1\|WP_087861459.1\|524213_525302_-\|amidohydrolase-family-protein	gnl\|CDD\|238641	cd01316, CAD_DHOase, The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.	6.11012e-164
NZ_LT859958.1\|WP_087861457.1\|520598_521540_-\|M48-family-metallopeptidase	gnl\|CDD\|320684	cd07325, M48_Ste24p_like, M48 Ste24 endopeptidase-like, integral membrane metallopeptidase. This family contains peptidase M48 family Ste24p-like proteins that are as yet uncharacterized, but probably function as intracellular, membrane-associated zinc metalloproteases; they all contain the HEXXH Zn-binding motif, which is critical for Ste24p activity. They likely remove the C-terminal three residues of farnesylated proteins proteolytically and are possibly associated with the endoplasmic reticulum and golgi. Some members also contain ankyrin domains which occur in very diverse families of proteins and mediate protein-protein interactions.	1.04741e-42
NZ_LT859958.1\|WP_087861469.1\|536909_537914_+\|diphosphomevalonate-decarboxylase	gnl\|CDD\|225941	COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism].	2.50375e-92
NZ_LT859958.1\|WP_087861468.1\|536422_536731_+\|DUF4282-domain-containing-protein	gnl\|CDD\|379475	pfam14110, DUF4282, Domain of unknown function (DUF4282). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 93 and 155 amino acids in length. There is a single completely conserved residue E that may be functionally important.	2.12761e-08
NZ_LT859958.1\|WP_162287644.1\|533140_536083_-\|S8-family-serine-peptidase	gnl\|CDD\|173807	cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.	3.33144e-84

>NZ_LT859958.1|WP_087861463.1|528118_528565_-|GNAT-family-N-acetyltransferase
MLVYIELMREVTDEIIAAFEKLMPQLNHHLSAPTHDELQKMAASQATHVFFARLPDEHGQIVGSATLGTYRTPTGLHAWIEDVVVDRSARRKGVGRALTEACLEQARALGLSEVNLTSRSARCAANLLYQAMGFIRRETNLYRYSLQD
>NZ_LT859958.1|WP_087861462.1|527597_528113_+|hypothetical-protein
MGETEKGLGVMLEDTHEISVTTPTSQKRSSWYLLTGIILGLILGLAYAWLINPVIYKSGPPAALGEVDKDFYRVTIAQVFWVTGDLERASLRLVLLEDPDPVDALGAQAQRALATGNDPDARALALLASVLQNTSPIQAPTLESTSVPATATELPQPLIPTYTLPIPTGTP
>NZ_LT859958.1|WP_087861461.1|527257_527611_+|hypothetical-protein
MHRRTWRFVFFALAILAGFAAGLGYGWLIHPVGYHSIDPQTLQIDYQTDFVLMVAELYRAEGDLAMALARLDFLGGSPQVTINDAIDYANTRSYAAADLQLMQDLASVLRQALDGRD
>NZ_LT859958.1|WP_087861460.1|525597_527256_+|urocanate-hydratase
MSQPRPVRAPRGTQLTCKSWLTEAAYRMIQNNLDPEVAERPEDLVVYGGRGQAARSWEAFDAILDTLKNLENDETLLVQSGKPVAVFKTHTDAPRVLIANSNLVPHWATQEHFDELAARGLMMFGQMTAGSWIYIGTQGILQGTYETLGSLAHLRGWPSLRGKFVLTAGLGGMGGAQPLAITMNEGVGLIVEVDSDRARRRLEIGYVDAVVDTLEEAMTLVEEAQAADTPKSIGLIGNAAEIFPELVIRGVLPDVVTDQTPAHDLLSYIPAGLTLTEADELRERDPQEYARRSQASMAQHVQAMLDFQKAGAEVFDYGNNLRQRAFDYGVKDAFNFPGFVPAYIRPLFCEGKGPFRWVALSGDPEDIYATDEAIKALFPEDEHLHRWLNMAKAKVPFQGLPSRICWLGYGERAQAGLVFNNLVAEGIVSAPIVIGRDHLDSGSVASPNRETESMLDGTDAVSDWPILNALINAVNGATWVSFHHGGGVGIGFSQHAGQVIVADGTPEAAQRLERVLTVDPGMGIVRHVDAGYPQAIQAAKRHGIHIPMLKED
>NZ_LT859958.1|WP_087861459.1|524213_525302_-|amidohydrolase-family-protein
MALFFCNRRLILRIPGLIDPHVHMREPGAVHKEDWSSGTAAALAGGFTQVLAMPNTNPPVVDAPSLAAALKLAARRARCDFGLYLGASRHNLPATEDLAGQCAGLKLYLDQTYGPLRLDDITVWKAHMQTWPKTRPLVVHAEGRTLAGAILLAALVDRPLHVAHVATREEILLIRVAKQRGLKITCEVTPHHLFLTAADLPGGQGEVRPRLASRADVDALWKHLDVIDCFATDHAPHTAAEKATHDPPPGFPGLETALPLLLSAVRAGRLTLDDVLNRMGPHVRRIFGIPAQPETWVEVNLEQRHTLTARGMHSKAGWTPFEGWSVYGLVRRVMLRGVTVYEDGQVLAQPGFGQQIAHGAER
>NZ_LT859958.1|WP_087863212.1|523098_524034_-|aspartate-carbamoyltransferase
MQNSPFYGIDIITVKQFDREQLTYIFEVAHEMYEMVSRVGSFDLLKGKILANLFYQPSTRTSSSFTSAMERLGGSVIPINNVSYSSVTKGESLPDTIRTLEAFADVIVLRHPEVGSSALAAKYARKPIINAGDGVGEHPTQALLDLFTIHEELGRVDGITVTMMGDLKYGRTVHSLARLLSLYNVKLNYVAPENLCLPDEIKAEIGTKGIPQDCFADLTPVLPETDVLYVTRVQKEYFEDPAQHESLKGSYVITTETMRQAKSKMVLMHPFPRVWEIDMAVDADPRAAYFRQMEYGLYIRMALLAMVLGKA
>NZ_LT859958.1|WP_087861458.1|521548_522988_-|orotidine-5'-phosphate-decarboxylase
MPTFFEKLNQRARAIDSLLCVGLDPHPEELPEQTAEAAEAFCIRLINATQEYALAFKPNAAFFEVLGPEGWAALHRVIQAVPEGIPVILDAKRGDISSTAQAYARSAFEVLGADAITLNPYMGYDSLSPFLADPEKGIFLLCKTSNPGSVDLQDLPLGGYYRLMTVYEKVAGLAQEWGTNCCLGLVVGATFPEALQRVRQFAPDQWILAPGLGAQGADLKEAMRAGLRADGLGLLINVSRSISRAEDPGQAARALVESFREAQLEIKQPSPAMESPTPPLIASLVEGLLSMGCIQFGEFTLKSGLVSPIYIDLRRLVTFPGWMTQVAAVYIQQLSQLEFDRIAGLPYAALPIATAISLQGNYPLIYPRKDVKDYGTGMAIEGIYHPGETVVVIDDLATTGGSKFEAIEKLAEAGLNVRDVVVLIDRESGAREALTEAGYRMHALLTLSQLLDHWQETQRLPANQIARVRAFLQETGTSG
>NZ_LT859958.1|WP_087861457.1|520598_521540_-|M48-family-metallopeptidase
MFRTRAYRYENEQVVLILTILLVLGVIILTSTATFCLSAVFILGMFLISAVMIHSHHQSLMQHALRVDRARTPELANLIAECGVKLQPGQVDVFVVNQKQMNAYTFGISSPKVLVLFAPLVKTMTVNELKFIIGHEMGHVVLGHTWLNTIIGGMAGIPAPFGAAVILYTAFRWWNRMCEFSADRAGLLACGDIHTAISALVKLAAPKIRTQADFESALAMIDAEDDPVSNRLAELFQSHPMLIRRINTLRDYARSTEYQRIQTGINGNLGAAPSAPAARFVAPVQLEPETSTLLETELTPEERWPWLKPKQAP
>NZ_LT859958.1|WP_087861456.1|519196_520522_+|GNAT-family-N-acetyltransferase
MSESFIRDLGEGLIIRRSTSEDAQALAEFNIEIHSEDEWDAKGLEDWTLDLISGEAPTFNTDDFLIVEDTHSGEIISSSCLISQTWSYEGIPFKVGRPELFGTRKEFRRRGLVRQQMEILHEWSAARGELVQVITGIPFYYRQFGYEMALNLHGGRSGYKVHVPKLEDGEEEPYTFRKATTTDIPFLMTTYNRGCQRSMVYAVWNKHLWQYELTGKRRYNINAREIFIIESLAEEPVGFIGIPPVKWGDNSVLTVYELAPGVAWSSVTPGVARFLWMQGETLAEDQGLPQERFGFMLGETHPAYDVIASSLPYNHEPYAYYMRVTDLLAFIQEITPALEARLADTPFDYYTGEVILGFYRDGIKLVFKNGHLEAINKIDLDALRDATARFPGLTFLQLLFGYRSMDELEHAYADCFAKKEENKNLINTLFPKRSSDVWPIS
>NZ_LT859958.1|WP_087861455.1|517964_519113_-|MFS-transporter
MTKMNTRFKIFVFLQFGAFGVYGSYLPLFFYNRNFSGFQVGLLLGTMPIVVLGLQPAWSYLSDRLNTRKALLLISCLGMGLAMFGLGLSKSFVAAFVWIVLFAAFSAPIIPIGTAILLEYLEASDELDKYSLFRVWGSVGFAIISMVAGSLFLGENTDYLVWLTGGIYILLGLVTLTLPETRSQVHHSETKVSEILSGNPRLVFFLIGSIFVGASLVVYNNNITLFLQSLKAQDWLIGLTISLQAVVEIPLMLLVPLALKHRSPRWVILMGTVLLPLRWLIYFLVKTPGWVVPSQVIHGFAVISFYVVGIGFVDQLVNPRWRATGQGLYSASLNGIGAALGAYLAGAILEWFGIRTVWGFNIILGAIGLGFMLLALYPRHKK
>NZ_LT859958.1|WP_087861466.1|531877_533098_+|benzoate/H(+)-symporter-BenE-family-transporter
MDGDITDNRHHPDFEFNLRELAGSMGDFGTLFPLAVSYIAINGMNPAGLFIMLGLTNIALGLIYRLPMPLQPKKIVAITAITQKWSPDLIYASGLGLGLLWILLTVSGLLRWLVRITPDYIVRGIQLALGITLAWQALQWMRPEPLLGLVAVVIVLLLRSNRYAPASVVLMVLGVIILAWRGNLPEHWDLRLTLPVIAVPRWEDVWKTMLLAGFAQIPLSISNAIIAPAALIRDYFPKKSVSEEKLMLNMGVMNVFSSILGGMPMCHGAGGLAGQYYFGARTGGAPIMEGVIEILIGLFLSGSIAALMAAFPMPLIAGMMLLVGIQLARTARNLRGWELALALATAALSIVTNIGIGFLGGLVAAHLLKAVRRRGTEDGGRGTGDGKRGTEDRGRGTDDGSSTTIH
>NZ_LT859958.1|WP_162287644.1|533140_536083_-|S8-family-serine-peptidase
MKHKLVLRSGILLLIGMIGLTLWGNGRLPVKADDGNQKIPWVDPALLAKSKTSEPLDFLIYFEEKADLSPADALSWEERGWFVYETLTALSASSQAKVLAYLAEQGVPYEAFWIQNVIAVQSSTAETLVGLLNYAEIEALLSIPQVFLGSQVEEEWIETEPTAVAGISANLTQIKADQAWSQGDRGAGVVLGAIDTGARFTHEALVESYRGNLGAKTFSHHYHWWDAVNGKEEPYDDHGHGSHVVGIMAGGVGSGDAIGVAPGASWIACKAISASGFAWGNDLIKCGQFMAAPTNLSGENPNPNLRPQAVNNSWGDCGRAYNAWYQGVIDAWVAMGIYPVFANGNNSNCGYSSPPGLNTVGNPARSHNVTSVGSTGRSDGQYAPHSNWGPTDDAKVFHSQGYPTIKPEVVAPGVDILSAAGSDDRAYAALSGTSMSAPHVTGQVALMWGSAKCLLGDVAATTDLILETARPIPYDTGQGDEGPDFVPNHATGWGEIDAQAAVNAARAYCAGGHLDGYVLDHENQQPITGALVAATSQGEMTSSVSALTDKDGYYRIHVNSATPYTLTASAYGYHPVAVGDVLVDASGGTTTTHFHLMPKSNLLTFTGTVTDGSGHGYPLYARITLENENYSQAVYTNPFDGRFQVTVYDDLAYDLNISAMVPGYQPVLAQGIVLGDQPESLHYTIEITAGCEAPGYASSNLLAEGFDSRKLPPGWEVWDHAGTGVTWGFEDQSERSNQTGGSGGFAMVDSDYHGSLDVDVSLVTPPLDFLDESTVMLSFSQNFFSYQGNRDEIADVDVYVGGEWYNVLRQTENQTGQSHPLLDISELAAHQPYVRVRFHYYNASAEWWWQIDNVQIGSHECALVPGGLLAGFITDSRTGEPLVGAVVSNSQARGVSSTTPVDPGLPDGFYWMFQPMLENPQVIAVKTAKSLYLSELADVELRQDEITRHDVTLVSYWNYLEQVFNKLLSMILEFVDGARG
>NZ_LT859958.1|WP_087861468.1|536422_536731_+|DUF4282-domain-containing-protein
MKFKNFLSFERMITPVIIKVLFYIGLVVSVIGGIVVFIGSVIAGFADGGVGSILLGLIGGLIGGVLTVFLGVLATRIYAELLILFFRINETLTDIKGLLQEK
>NZ_LT859958.1|WP_087861469.1|536909_537914_+|diphosphomevalonate-decarboxylase
MNMHATALAHPNIAFIKFWGLADEPRRIPANGSLSMNIDGLTTRTRVEFDPTLAADELLINGQPVFGNGLERVQTFMDRIRRLAAKKLYAHISSENNFPIGAGLASSASGFAALALAGTAALGLTLSERELSALARFGSGSACRSIPAGFVEWTVDPAMGETDAHSIAPVDHWDLVDCIAILSHAHKPVGSQEGMRSAPSSPLQAARVADAERRLKLCRQAILERDFAVLAEITELDCNLMHAVMMTSTPPLYYWEPGSLAIIQAVKAWQAEGLSVTFTLDAGPNVHLITTRGSMDEVTHRLRRFPEVIDVVCGGPAGPARLVEQVSPSRTAQV
>NZ_LT859958.1|WP_087861470.1|537984_539061_+|site-2-protease-family-protein
MSVILLILQVVIIIGLLIFFHELGHFLVSRAVGVHIEEFGFGYPPRLAKIATWKGTEITLNWIPFGGFVRPKGEDDDTIEGGMAAAPAWKRLTIAAAGPLMNFLIGIIILVVIYSALGIPASDQAMITQVAPNSPAMQAGLLPGDIFISVDDVAIENMDQLVTVINERAGLPVSVKVLRAGQVETFILTPRLEPPPGEGAMGVALSNPLKPTPFFKSVGYALESTRLIIRETLLLPARLIRGTVDPAIVRPVGYKGIYDIYSQAVEMDQETSIATAEPVPIFTLSIIANISIALGITNLLPIPALDGGRILFTLPELILRKRIPQKWENAINTVSFLLLILLMVVITVLDFTNPIVLP
>NZ_LT859958.1|WP_087861471.1|539084_540092_+|HEAT-repeat-domain-containing-protein
MNYLNHKDFEFNTVKKALLNADAPFPPEMIDYFSDISEKDLELLKDVWPQVWIERRRGLLEDMENLAENDTLLDFDPVAIMCLEDEDPVARATAIRLLWQSDREDLVPLLLKRLQEDTETIVRAAAATALGTFVELGELEEIKAGTLQQVVDCLIKTYQDSGDKLICRRALESLGYSSHPAIPDFIRRAYESNDEEWLQSALFAMGRSYDKRWTNQVLDMFTHPDSEVRCEAIRAAGELEAQDARELIIDLLEEGTDDEELYFAAIWALSKIGGEGVRELIETALDEAEDVDEVLLLEDALANLDFTEQVSRFDMMNFDEDDLDDWLDDEEGDAY
>NZ_LT859958.1|WP_087861472.1|540138_540432_+|acylphosphatase
MNEHNIHRLHVHVEGMVQGVGFRYFVLRSAQKLGLTGWVRNRYDGRVEVMAEGTLTSLNRLLQELRRGPQSSEVWNVDYQFEDARGDFERFSVLSTG
>NZ_LT859958.1|WP_087861473.1|540469_542506_-|excinuclease-ABC-subunit-UvrB
MPFELQAPYQPTGDQPEAIAKMVAGIQRGMRHQVLLGATGTGKTFTVANVIQQVQLPTLVLAHNKTLGAQLYAEFKEFFPNNAVEYFVSYYDYYQPEAYVPQRDLYIEKETSINDEIDRLRLAATTALLSRKDVIIVASVSAIYGLGDPEAYRSTVIQLEVGRIYRRNALLRRLVESQYTRNDFELKPGVFRVRGDTLEILPAYDDTRAFRISFFGDEVERIITVDPLTGEVFGVPETVDIYPAKHYITEDEHMAQALLNIERELEERLVELRAAGQLLEAQRLEQRTRYDLEMMREVGYCSGIENYSRHIDGRAAGTAPWTLIDFLPKEYLLVIDESHMMIPQIRGMYNGDRSRKQVLIDYGFRLPSALDNRPLKFEEFKQQMGITLYTSATPAEYELSIADQVVEQIIRPTGLVDPEVIVRPTEGQIDDLYGEITRRVAVGERVLVTTLTKRMAEDLSDYLMELGLKVHYLHSEIETLERVGILRDLRLGVFDVVVGINLLREGLDLPEVSLIAILDADKQGFLRSGTALIQTIGRAARHLHGQVIMYADLVTEAMQYAIDETNRRRAIQMAYNKEHHIEPASVVKAVRDLTDRLARDVGAEDGENLRGKASKLEQKELLRMINELEQQMKAAARELEFEQAALLRDQVYELRAMLADESDLPPWKKVQLITGGRD
>NZ_LT859958.1|WP_157891653.1|542606_542825_+|hypothetical-protein
MDRIQDSGIRKQESGSRKQEAGGRKQEAGIRKQEIGNRNQEIGCRNQNSGSRRQEAGNKKQETGCRKQESGK
>NZ_LT859958.1|WP_087861474.1|543043_544252_+|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MKIPMSSPIITDADRQAVLEVLNTPNLSIGPRIEAFERAFCNLTGAQHAIGVNSGTAGLHLCVRAAGIKAGDLVLTTPFSFVASANVILFENAIPVFVDVDPLTGNIDTDQLNRAAEDLSLGGDLARQWLPRQLPEGCEEHLGAVKAILPVDVFGQPADYDHINAIARRYNLAVIEDSCEALGGAYKGQPAGTLGDFGVFAFYPNKQITTGEGGMIITNDPDAANFMRALRNQGRAPGDTWLQHTYLGYNYRLDEMSAALGLAQLERLETLLENRAQVADWYAKHLAKIDRVSPPGLADSTTRVSWFVYVVRLDASINRDRLAKILEHRRIPVRPYFSPIHLQPYMVKAFGFQLGDFPVTEELGKRSLALPFSGAMTEEMVVEVCQALAEALPASEVSASGR

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Crispr_ID: NZ_LT859958_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_3

979041-979616

Orphan

Consensus_repeat	Method
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	CRISPRCasFinder
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	CRT
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	PILER-CR

7 spacers

The CRISPR arrays of NZ_LT859958_3

>merge|NZ_LT859958|3|979041-979616|CRISPRCasFinder,CRT,PILER-CR
TATAACATGCCCCGAAGGGCTCATTGTGTATTTCACCAGAAGAACACGGCAAAGGTTATTGGCAAGGAGTAATTACAACGTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACCACTGAGTGTCATGTTATATGCACTCAGGAAGAAGTTTGGCGCGCACCCCGTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACCAATACATTCAGGCTTTTGAATCGCTTGCTCGGCAACGTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACCACGGGAGAGTGGAAATCAATCCAAATCCTATACCAAAACAGTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACCTAAGAGTTTAGTGGATCAAGCCCCTTTACTGTCGATGTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACCGATTAGCAAGGCACATACATTAATCGAAATGGCATATACGTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACCGCTAAAGCGAGAAGGTGTCCCCTTTGATAAATGGTCCTGTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC

>NZ_LT859958|3|2|979041-979616|CRISPRCasFinder
TATAACATGCCCCGAAGGGCTCATTGTGTATTTCACC	AGAAGAACACGGCAAAGGTTATTGGCAAGGAGTAATTACAAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	ACTGAGTGTCATGTTATATGCACTCAGGAAGAAGTTTGGCGCGCACCCC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	AATACATTCAGGCTTTTGAATCGCTTGCTCGGCAAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	ACGGGAGAGTGGAAATCAATCCAAATCCTATACCAAAACA
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	TAAGAGTTTAGTGGATCAAGCCCCTTTACTGTCGAT
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	GATTAGCAAGGCACATACATTAATCGAAATGGCATATAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	GCTAAAGCGAGAAGGTGTCCCCTTTGATAAATGGTCCT
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC

>NZ_LT859958|3|1|979041-979616|CRT
TATAACATGCCCCGAAGGGCTCATTGTGTATTTCACC	AGAAGAACACGGCAAAGGTTATTGGCAAGGAGTAATTACAAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	ACTGAGTGTCATGTTATATGCACTCAGGAAGAAGTTTGGCGCGCACCCC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	AATACATTCAGGCTTTTGAATCGCTTGCTCGGCAAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	ACGGGAGAGTGGAAATCAATCCAAATCCTATACCAAAACA
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	TAAGAGTTTAGTGGATCAAGCCCCTTTACTGTCGAT
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	GATTAGCAAGGCACATACATTAATCGAAATGGCATATAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	GCTAAAGCGAGAAGGTGTCCCCTTTGATAAATGGTCCT
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC

>NZ_LT859958|3|2|979120-979616|PILER-CR
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	ACTGAGTGTCATGTTATATGCACTCAGGAAGAAGTTTGGCGCGCACCCC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	AATACATTCAGGCTTTTGAATCGCTTGCTCGGCAAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	ACGGGAGAGTGGAAATCAATCCAAATCCTATACCAAAACA
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	TAAGAGTTTAGTGGATCAAGCCCCTTTACTGTCGAT
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	GATTAGCAAGGCACATACATTAATCGAAATGGCATATAC
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC	GCTAAAGCGAGAAGGTGTCCCCTTTGATAAATGGTCCT
GTTTCAATGCCCCGAAGGGCTCATTGTGTATTTCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_157891688.1\|973774_975568_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NZ_LT859958.1\|WP_157891694.1\|991351_992680_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NZ_LT859958.1\|WP_157891690.1\|981095_982730_-\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|225201
NZ_LT859958.1\|WP_087861837.1\|971757_972765_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
NZ_LT859958.1\|WP_157891693.1\|986474_987377_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861832.1\|966295_967606_+\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|274244
NZ_LT859958.1\|WP_087861836.1\|971114_971498_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380351
NZ_LT859958.1\|WP_087861835.1\|970242_971115_-\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NZ_LT859958.1\|WP_087861848.1\|988012_988885_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|335469
NZ_LT859958.1\|WP_087861849.1\|988985_989699_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379084
NZ_LT859958.1\|WP_087861841.1\|976550_978005_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_LT859958.1\|WP_087861851.1\|990503_991307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_157891692.1\|985274_986165_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861833.1\|967758_969165_+\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NZ_LT859958.1\|WP_157891689.1\|975827_976259_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861838.1\|972794_973691_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_LT859958.1\|WP_087861834.1\|969256_970219_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_LT859958.1\|WP_157891691.1\|983103_985314_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|250634
NZ_LT859958.1\|WP_087861842.1\|980521_981022_+\|DUF3592-domain-containing-protein	unknown	unknown	gnl\|CDD\|378822
NZ_LT859958.1\|WP_087861850.1\|989738_990365_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226987

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_157891688.1\|973774_975568_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	1.78984e-08
NZ_LT859958.1\|WP_157891694.1\|991351_992680_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	1.69713e-12
NZ_LT859958.1\|WP_157891690.1\|981095_982730_-\|WD40-repeat-domain-containing-protein	gnl\|CDD\|225201	COG2319, COG2319, FOG: WD40 repeat [General function prediction only].	2.94995e-25
NZ_LT859958.1\|WP_087861837.1\|971757_972765_+\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	9.05176e-124
NZ_LT859958.1\|WP_087861832.1\|966295_967606_+\|thymidine-phosphorylase	gnl\|CDD\|274244	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff. [Purines, pyrimidines, nucleosides, and nucleotides, Other].	0
NZ_LT859958.1\|WP_087861836.1\|971114_971498_-\|cupin-domain-containing-protein	gnl\|CDD\|380351	cd02222, cupin_TM1459-like, Thermotoga maritima TM1459 and related proteins, cupin domain. This family includes bacterial and archaeal proteins homologous to Thermotoga maritima TM1459, a manganese-containing cupin that has been shown to cleave C=C bonds in the presence of alkylperoxide as oxidant in vitro. Its biological function is still unknown. This family also includes Halorhodospira halophila Hhal_0468. Structures of these proteins show a cupin fold with a conserved "jelly roll-like" beta-barrel fold that form a homodimer.	3.18546e-36
NZ_LT859958.1\|WP_087861835.1\|970242_971115_-\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	4.36578e-86
NZ_LT859958.1\|WP_087861848.1\|988012_988885_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	2.2267e-53
NZ_LT859958.1\|WP_087861849.1\|988985_989699_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379084	pfam13240, zinc_ribbon_2, zinc-ribbon domain. This family consists of a single zinc ribbon domain, ie half of a pair as in family DZR. pfam12773.	1.78478e-06
NZ_LT859958.1\|WP_087861841.1\|976550_978005_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_LT859958.1\|WP_087861833.1\|967758_969165_+\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_LT859958.1\|WP_087861838.1\|972794_973691_+\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	2.16199e-13
NZ_LT859958.1\|WP_087861834.1\|969256_970219_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.17975e-35
NZ_LT859958.1\|WP_157891691.1\|983103_985314_-\|hypothetical-protein	gnl\|CDD\|250634	pfam01456, Mucin, Mucin-like glycoprotein. This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide.	5.86512e-05
NZ_LT859958.1\|WP_087861842.1\|980521_981022_+\|DUF3592-domain-containing-protein	gnl\|CDD\|378822	pfam12158, DUF3592, Protein of unknown function (DUF3592). This family of proteins is functionally uncharacterized.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.	1.0684e-13
NZ_LT859958.1\|WP_087861850.1\|989738_990365_-\|hypothetical-protein	gnl\|CDD\|226987	COG4640, COG4640, Predicted membrane protein [Function unknown].	2.93174e-05

>NZ_LT859958.1|WP_087861841.1|976550_978005_+|leucyl-aminopeptidase
MRFNVKTGDVLKEQVDLAVVFADEKAELPEKLSELFLADDFSGKPKQTLLLYTRNAVLPSRVLLVGLGESNEVTADTFRNAAAIAIKETIRLKAERVSFAMFGETDVDEPVLAQAIVEGAVLGSYRFLDYKTDLKEEDTFEVKEAILICKNIDEAEKGVSEGQAISAGVILARNLVNKPAAEITPARIGDEALTLGERHGIKATVLGLQELKEQGFGGIIAVGKASANEPRFIILEYGEPSENVPTIALVGKGISFDSGGLDIKPADGMVAMKCDMSGSATVLGTMEAVARLKLPIHLVGLIASAENMPGSNATRPGDIVKSLSGKTMEILNTDAEGRVVLADALYYAQRYNPDAIIDFATLTGAIMIALGQHATGLMATDQALAEKIKAAGEKSGERVWQLPMWPEYREMVKSDVADVKNTAGRAGGSITAAAFLAAFVGDFPFAHLDIAATAWMENPIKAYHHKGATGVGVRMMVELLKEYR
>NZ_LT859958.1|WP_157891689.1|975827_976259_+|hypothetical-protein
MYKTNDADFMSFSNQAKYISLNPADSTATIAARIRSLATMGGTNFHSIFKTANRTYDRIIIFSDMQGWIGYHTPTKAFNAYKERTNADPVVFSFDLQGYGTLQFPERNVYAIAGFSDKVFDIMKLLESDKQALLHEIEKIELG
>NZ_LT859958.1|WP_157891688.1|973774_975568_-|glycosyltransferase-family-39-protein
MIKKTTTINYICILILFVLVALSALFFYPYAMEVPHRDSGIYLYLGQELLEGKTIYSEVWEHKPPFIFYVNALGLLLGGGSGWGVWGIEVLFLFTTVLLSFLTLRHKIKPIASLLLIIATYMASYQYMSGNFTEEYALVLQAAILFIFLSQHFKSHELRNYFIIGTLSGIAFNIKQTYIDVTIAIGLLLIIEMIVDKKWANIKSMASIGVGFLIPNLITVLSMAINHAVREWWDAAFIYNFAYSDIGPFERVNALIDIFQVNSKYPLFIFLFLTWVGASLAFLYQAFPLITHFFHTRKGKIFLFTLTGFFFVLLGIGQFMGTQPGLGIIETVVLSFAVLSLILSLLFAFVLKPKNHQVRKPIRLTPWDTLNDQKIFSIHDPLLIGVFHFPIVLFLATASGRNYPHYFIPLYATAFLLFSGVYLITQNVDWKLSKTRIANIIFIALFIIGMMQPGQRLLRGLGGPYTYHPYRELVQYIVDNSNEDDQVLVWGLETLINYLSHRSSPSRFSYVDSLYYRSPLQAESTAIMLNDILAHPPKFILDMRNPQYPFIDGVSNDECLAMVPADGTDLEKIIHFTCKNYQHIDRVNGVEIYKRID
>NZ_LT859958.1|WP_087861838.1|972794_973691_+|alpha/beta-hydrolase
MTTLIWVLVALSAIIMIYLVVGSVAALTLTKIGDHPQYDQNPGRYGVEYESVQFKARGEPLQIAGWYLPNPDAERVMILVHGRNASKQNAISGNLSALAAELHKAGMGVLMIDLRGHGESEGKRYTFGAQERRDVLGAVDFLLGQGFAPGRIGALGISLGGAAVIGAAAEEPAMGVVVVESTFADINALIEPNWKVESGLPMFFLPGVFLMWRVLIGFDLRNVKPVEELARVLPRPILILHSRQDKMVDCSQAQELKDAVPEARLVLFEDCDHAELFRDQPEAYLEAMIPFLKEHWNG
>NZ_LT859958.1|WP_087861837.1|971757_972765_+|adenosine-deaminase
MIHADLPLIDLHRHLDGNVRLATILELAQQHNLPLPADNLADLRPYIQVSEPETDIMAYFQRFTWMISIFADEDACRRVAYENVLDAREEGIDYIELRFSPWFMAEPHGLDPVGVVGAVVDGVRAAVETLGDIRVNLIGIISRTYGVEIGYQELDALLAYRDDIVGLDLAGDEANFPAEWFTPHFKKARAASWGFTVHAGESAGTESVWRSIRDLGAVRIGHAVCIMDDPSLVDYMLEHRIGIEANLTSNWHTNTVASYAQHPLKTWLDAGLLATINTDDPGISPVTLRDEFEIAAPAAGLTSADTRKAQINAVEVAFLSAAEKQALLKKKAQAG
>NZ_LT859958.1|WP_087861836.1|971114_971498_-|cupin-domain-containing-protein
MSTIHRFLGDTTTQDYTWEGVEPLEIHTEEVRQVLKHVLVGPDDGAPNFVIRYFHVPIGDNTFYDKHPHEHGIVILHGKARVQINQEYYELGPLDAIFIAGNDIHQLVNIGDSPLGFLCVITRQAEY
>NZ_LT859958.1|WP_087861835.1|970242_971115_-|SMP-30/gluconolactonase/LRE-family-protein
MKSITAELLFDTGNTLGEGPLWHPEKSCLYWVDIEAQFLYRSDTALNSYTRTSFDTPIGAFCFTKEGGFLLATGQGFLAWDGLNTQPIWNPLPPRSNVRLNDGKVDPAGRFWAGSIDTEQSQAELYRLDPDGAQHTLLKNLGIANGLDWSPDRKTMYFTDSSQYTIFSFDYYLETGAIGNQRPFLQLPRTSAEIVPDGLCVDAEGCLWSAHWNGWQVVRYSPAGVPLLTIRLPAQRVTSCCFGGERKDLLFITTARTGLTQSALHKQPHAGGVFVVHTETTGQNTHFFGS
>NZ_LT859958.1|WP_087861834.1|969256_970219_-|sugar-phosphate-isomerase/epimerase
MHIGVLTALYQDLPFIEVLDKVKAMGVTAVEIGTGAFAASAHIDLARLLTEKPAREAYLDEIHQRGMFISALSCHGNPLHPDPAIADHADDLFRKTVHLAQLMAVPVVNTFSGLPAGCEGDRTPNWVTCPWPPEFLEILDYQWNRVAIPYWKDAAAFAADHGVKIGIEIHPGMLIYNVETLLRMRSEVGPALGANLDPSHLVWNGVELVAAIRALGEAIHHVHGKDCYVDPLNVAVNGCNDHKPYHHILDRSWTFRTIGYGHDLKFWKDFVSALRLVGYDYVISIEHEDALMSNDEGLVKAITLLKEAMIFDPPGEMFWA
>NZ_LT859958.1|WP_087861833.1|967758_969165_+|NADP-dependent-phosphogluconate-dehydrogenase
MEKAKFAIVGLGVMGQNLALNIANNGYPVAVFNRTESVTRQFVAGLPADQGIIGTYSYVELADSLEKPRRIMLMVKAGPAVDAVIAALKPHLEPGDILIDGGNSYFEDTERRTVELEKEGFLFIGTGVSGGEEGALHGPSIMPGGSVDAWAALKDMFTAAAAKAYDGEPCVDYIGPRGAGHYVKTVHNGIEYAIMQMIAEVYDLLNRGLGLSTMELSELFKEWDAGELASYLVEITYKIFEKVDPETGKPLVDLIVDEAQQKGTGKWTSQNAFDLGAPTHTINAAVTSRIISGMKSQRTVAQALIDGPSEKFSGDREAMIAAIKNALYAGIILAYAQGFGLLHVASEEYDYDLDMQMIAKIWRAGCIIRADLLDDIMKAFDRDPGLVNLLLDDDFREAVVSRQGDLRHVIINGIKLGIPVYALSSALAYFDAYRTERLPANLIQAQRDYFGAHTYRRLDKEGSFHTDW
>NZ_LT859958.1|WP_087861832.1|966295_967606_+|thymidine-phosphorylase
MRAVDIIEKKRDGIELSRQEIEYFVRGYTNGEIPDYQAAAWAMAVLLKGMTAEETTFLTLAMANSGEKLDLSHVVDIAVDKHSSGGVGDKTSIVVVPLVRACGLPVGKMSGHGLGFSGGTLDKLESIPGFRTNLSKDEFLHQLGTLGMVLSGQSLDLAPADGKFYALRDVTGTVQSIPLIASSIMSKKIAAGAQAIVLDVKVGHGAFMKTLDEARELAALMVSIGDLSGRDVAAVLSDMNQPLGQAVGNALEMKEAILTLRGEGPADFWAHCLEISSQMLVLGKRAETIEKARAMAQEALMTGQGLEYLRRLVDVQGGDVSYVDHPEKLPQAPIESMITAPVNGYLHEVNARLVGEAAVLLGAGRSKKGEEIDLAVGISVLVKVGDYVEVGQPLFLVHARDETTLNLAAEQLSAASVIADQPKAPLPLFYGLVSSD
>NZ_LT859958.1|WP_087861842.1|980521_981022_+|DUF3592-domain-containing-protein
MEMFGNWAAYLFVGSIVLPMGLGIFLIIHAQRSKRKALQSQSWPVTKGIITESTITTMEDEEDGTTYLPVIRYAYEVGGMIYDGKRVVFGGDIEFNTHQKAAEFLVAYPVDQEVSVYYNPEKPHEAVLQQAAHRTAVGLVIGIILLGISCCFLSLMVMGIIWLKSL
>NZ_LT859958.1|WP_157891690.1|981095_982730_-|WD40-repeat-domain-containing-protein
MKYRRICPLLILIISTLACNLSSGGNHLRDLGGGDEPLPSDVDIGVPLPPNEDFGVLCFIEFEDSIAASAPAFDVFYSRDGGLTWEQEGFDEGGASGSLCNPGYDLPKELWVPPNGMERYRFNPGETIEISVDKGQSWQVAYDLSQIQWEPASTPAEDRQVIVRPGPLDAMIDPYSGNLLLAMGHAGVLLRLPSGEWRWVKAGQYANEAALNDSDETSRDDLHVDIQIPAFVKVSPEIEVDTETNFVDAMAFSPDGAVLTVSGFDGGVKLYDFIQSDRLYWHTFGKEDRNWRLYGLSYSPDGDTLVTCGTNVDQTLMIWDVQSWELIKSYKGFQTSTLDTGAHAGRQYLAIAFGADPQNKDQVKLFRLPEGDELNIFSSQQGSVTSLFFIPETPLLAVARDTGSLEVWDIEKGETMPFSPTTAVALGYHSSKDLLMGLRPDGLLTAWDMSTGNLAWQLALQIPHGWRVNTGVFSDDGRRVAVGMHNGPLLVFDSSRGELYSRQWIKDGGTLQKLAFSPDGQWLAAGFTTGKVRIWRVDHLMHQD
>NZ_LT859958.1|WP_157891691.1|983103_985314_-|hypothetical-protein
MGYQSGEGYFWEIAEFNDQRADYYRFTAPVTTEGSAVTFQVSNPSPDISICMSLRDQRGSTVFTPPCFEKGADASLVYLLVPGQEYYIKLYGRDLTTSLQPYRLSATYIGDGNGTGLSEVEPNDDKQNANPWDMQEPFTGALLKSSDKDYIQIDIPTPGIYTFSITDVSPNLKVGLSLVGRTGLLHSVQALTKGQGVSLTMDGSAGEQYWLKVHALQWASDGSFYRLALTDFIPDLGEPNDKKAEATYWEIDEGPIQGYFWEKTHWSMYQADYFKFVAPLTEGGNPVTFQVANPGSDISVCMNLLDRTGGHLLSGECSPEGEDAFLTSALTAGMEYYLKLFTADNKASLQPYTLSIAYTPGEADELDETSRLIRLHGFVHRQWGLLPLPITNVSIYAHISGQPAFLLGTTNWLGTYSSKVMLADGQQVTLWVELPGTNFSPEEDTFIVEAGLRHHRSVFSVIGGQLVEQTPTPPPEPTNTPEPPFEMPTDTVTPEPLEEQEPTDTPTATLTSTATITPNPTFTATLTPTPTDTPQPPTSQQTLIIGTVWRLFEASGPVGVGMAEVILSINGVDQPTVLSRIDGLYLMDVEGIQPGDVLRLRAQAPQDDFEPLYYEWQAEEGVNRWEYDFYSYWDEITPPSTHDQNRIWGTVWDQFGDDVSGLYLNLQMGTSNAIQRIGPTDENGYFEAMVTLPDRVMVTVWVDAPGFVPSKLMFFHPYEPEDRELIFWKFRGVNLQ
>NZ_LT859958.1|WP_157891692.1|985274_986165_-|hypothetical-protein
MPIIDIPGEGVYNYTIPDDAPGMMFRLNVPEDVNNVILRQSCSSGGCLDTYVNPGSIPVPEFPRYSRTYTCEIFSQSYSASECYLINTYPEPYYIFVPSPSNDSWMLPTFSKSFSLEVEYRTKASVTATASIRQTKQAEYTQTQQAKIRTFTEVEPNDTKQTANEWDMIEPFSGQLTRGDEDYIGVTFSEPGIYTFGITEVSPETKVFLGLVSRHGGFVEEATSQNVGEGVSLTFDASAGEQFYFKVRATLYNTGEDGTYYTLELLDVVPDPFEPNDQIADATDWDISQVRGTSGK
>NZ_LT859958.1|WP_157891693.1|986474_987377_-|hypothetical-protein
MTKKFFVSKLIGLLFVFFLLVITKTSDVPAQSTYEPQLDHSACVYHCMMDQNFIHSKMGYGPASSTYYQFMTRFWETSGCKGVGIKDILETVIAVSGAPGGATMSCYQLLLAETLGCANTCRNANPSNSAYGANVKLTATTTSPGYLEVGLDNRLSSGDYLDYSNGYSGRFYLTTTLQLGGGTPLAVGHQFMPSMSFPNWITSQEFGAHKCTISDECPSCCEILWDLDAPSYIPTTVEFLDGVLYDLTDQAIGKKGVTGSFSNDGYVVLLRDGDTITINQGPYAGVAWTKAHNKTTKKHT
>NZ_LT859958.1|WP_087861848.1|988012_988885_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MKHKKIFWAFLVWTSLLACRVFSPFGGSDLPAQTGNDTPVVISVHDSKISPVDQMVLVYVPEGDFIMGSDAMGYGDNVPEHVVFLDAFWIDQTEVSNGQYLECVKSGACSPPGDEQEFGLYNHYDEIEYKDHPVEFVNWYQANDYCQWAGRRLPTEAEWEKAARGSEGWLYPWGDERPNRELLNFKGSYGQVNPLGGTNKVGSYPAGASPYGALDLAGNVSEWVADWYEQQYYKNSPSENPQGPASGTTKVVRGGDWATYDVVIFSSYRISIQPGLTLSGIGFRCAESGP
>NZ_LT859958.1|WP_087861849.1|988985_989699_-|zinc-ribbon-domain-containing-protein
METIKAQCPKCGADLEEGSVFCENCGALVERAENLQSEYSNGDSLNQKNKKNPISWNANLPLITSSVVIKQLLFALVASNLCVLIFILTVDAFSGDLTLQRFLNYVLYTLIIFGSLSVLAALVMLVFYGNRYEYKFTLDETGITSETVGKTKKKNAIINFLLIFSGKPGPAGTGLLAASRQKEKIAWSKVDRIQTDANKLEIVLRRKGRAIMLIRCTPENYAEVLHRANEAVNAQKK
>NZ_LT859958.1|WP_087861850.1|989738_990365_-|hypothetical-protein
MPETDAQYCDYCGKQILSGSKFCDFCGQSLGEQNDHQALPSPSARQEAQSRSTRFMRQRIAWAVIFGLILIPIVLLIIWKDVGELSRDVWLSLGGFIVVTSLLAVFTLRKGGSTWQGQLVQVIPREKGVQFVFLTNKGKKESLIAGSSLVKYFSVGDQVIKVKGYDFPEKIHRDGKTQLCMVCGKVYPMSEKRCRFCRYPSMDPHNFM
>NZ_LT859958.1|WP_087861851.1|990503_991307_-|hypothetical-protein
MKKHKTLSAVILLLSVGLMVSACQFKRAAPKLEWDPSPEAQLIVVSDPIQFPGIKPTYQDESMENYIPEGILFGDGRILWVKYVYKDGITSRFMKQGFLSSEQIQALLQQFADSGFFSWKDQYSGSFIEDGPPAKSITVFLRDYSKSVVVSNAPPPQGFDELFSTIRSGAGVEDQDYRPDRAFLRAYRQFDQWGIDQASQIDSWPAESFGFSLAELESETGIAKGRYVDGKALAFVWQVINANPQQPLVEEEGVWYLLTLQITGLSN
>NZ_LT859958.1|WP_157891694.1|991351_992680_-|zinc-ribbon-domain-containing-protein
MIEHYGIAIEKRSPLISLPVFNRWPEQRPVSYLMEDLQSKLSDEQAKQYLRALVSSTSMIQIKQGYHRKPVSSSFAFKAAPEGEILLLKTRPDTGVELIFPFSLQTLTDQLCEPMEHISNLGFSQDYLSPLAPSGLAALLALADHFNEVYPYPDPNWIPNRPLIFTLKSWHERLIKGRNAAIHESLLAAYINLTGNSLPEVNLEDLEFWLLAFINDLYIGLEDDRQLPGDADAEYFVAEDLLVILRCLAWWDLTLALEKIPVGAQGAKQALTFLQASVLWQFVPTHPEGLLIAPQIINGWLLKERVSEFLDHMLAAGLAEDPELTGDHRPVKIERQVSPQPQAADKTVVAQPSVAKPRPKPATSSASPPAAPIQPKTSTPSRPSSARVCSNCGTQLSPTAKFCKTCGLKVDDVPSPVNVCKQCGQPIRTGAAFCKNCGFRVN

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Crispr_ID: NZ_LT859958_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_4

1080609-1082561

Unclear

Consensus_repeat	Method
GTTTCAATGCCCCGAAGGGCTCATTTTGTATTTCACC	PILER-CR
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CRISPRCasFinder
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CRT

25 spacers

cas2,cas1,RT

The CRISPR arrays of NZ_LT859958_4

>merge|NZ_LT859958|4|1080609-1082561|PILER-CR,CRISPRCasFinder,CRT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACCTTATAACGATTTTGGGTCATGGGTAGCTCCTTTCAAGGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACATATCCAGTCCATTGCTTTTCTCCTTTTTGCGTATGGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACGTTCACGCTCATAATTTGCTCCTTTCTGTGTTTAGAGAATTAAGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACACTGCCAGCACCAGCAACCCCGTAGCGCAATGCTTTTTCGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACCCGAATCCCAAATACTACTCATAACATTTTCCTTTCGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACAATTCTATTCCGTCGTGGTCTCGCCACGCCCCAGCGGGCAGGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACGTGAAGGTTCTATAAAACTCGTTCACGGCTTGTGTGTTCAGGTGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTTATCAATCTCGATCCAAATGGCATTGGATGCCGCTTTGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTGTTAACCATGTGTCTTTCCCGTCCATGACGGGTTCCAGCGCGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTTTCTTTTTATTGAATCTCTTGACAAGGGTTTTGTAGGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTACACAAAGGCGTCATGGTAAATCCGGTACTGGAACAACCAGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACGAGATACTGGTCAGGTTGCGGATGAACCCGACCTCGTGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTGCTTCTGGTCTACTCTTTTTGGCTTGTCTAAACTTGTTTTGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACCATCACGCTAAAGATATACCCCTGGGCGTGTTGACTGCGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTATACATAACATCACCTCCAGGTGGTGGCTCTACGGGTGGAGTAGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACGCTCTGTCACGAAACTCCGATTCACGTTCCTTCTCGATATTGATGCATTTGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACCGTGAGGCAATCGAATATAAACATGCACGCCCCGCGCCGTTGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACCTGGCTCGTCCACCTTCAACCAGTGTAGCAAATCACCATACGGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACGGTTTTCAGGTCAAAAAATAGAATATCTCTCATGATAGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTCTGCCCAGAGGTGAGTATTTCATATTGATATACTCCGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTGGGGAAGGATGAAGTCGAGGTAAACTCCATCCAAGGGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAACTGACGGACGGATATGATTTTGTCTCGCACTCGCAGGGGTGAAATACACAATGAGCCCTTCGGGGCATTGAAACTCGGATATTGAAATACCCATGCACCTTTTTCGTACTTTGGTGAAATACACAATGAGCCCTTCGGGGCATTGAAACATCGCTGGCATTTACCTCTACCTCCGCCGTTTTGGACGGAGGTGAAATACACAATGAGCCCTTCGGGGCATTGAAACGAGTCATCGTCCAGATATTTGGGTTTTTTCTTTAACCCAAGGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC

>NZ_LT859958|4|3|1080609-1082561|PILER-CR
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CTTATAACGATTTTGGGTCATGGGTAGCTCCTTTCAAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	ATATCCAGTCCATTGCTTTTCTCCTTTTTGCGTATG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GTTCACGCTCATAATTTGCTCCTTTCTGTGTTTAGAGAATTAA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	ACTGCCAGCACCAGCAACCCCGTAGCGCAATGCTTTTTC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CCGAATCCCAAATACTACTCATAACATTTTCCTTTC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	AATTCTATTCCGTCGTGGTCTCGCCACGCCCCAGCGGGCAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GTGAAGGTTCTATAAAACTCGTTCACGGCTTGTGTGTTCAGGT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TTATCAATCTCGATCCAAATGGCATTGGATGCCGCTTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGTTAACCATGTGTCTTTCCCGTCCATGACGGGTTCCAGCGC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TTTCTTTTTATTGAATCTCTTGACAAGGGTTTTGTAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TACACAAAGGCGTCATGGTAAATCCGGTACTGGAACAACCA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GAGATACTGGTCAGGTTGCGGATGAACCCGACCTCGT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGCTTCTGGTCTACTCTTTTTGGCTTGTCTAAACTTGTTTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CATCACGCTAAAGATATACCCCTGGGCGTGTTGACTGC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TATACATAACATCACCTCCAGGTGGTGGCTCTACGGGTGGAGTA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GCTCTGTCACGAAACTCCGATTCACGTTCCTTCTCGATATTGATGCATTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CGTGAGGCAATCGAATATAAACATGCACGCCCCGCGCCGTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CTGGCTCGTCCACCTTCAACCAGTGTAGCAAATCACCATACG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GGTTTTCAGGTCAAAAAATAGAATATCTCTCATGATA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TCTGCCCAGAGGTGAGTATTTCATATTGATATACTCC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGGGGAAGGATGAAGTCGAGGTAAACTCCATCCAAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGACGGACGGATATGATTTTGTCTCGCACTCGCAGG
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	TCGGATATTGAAATACCCATGCACCTTTTTCGTACTTT
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	ATCGCTGGCATTTACCTCTACCTCCGCCGTTTTGGACGGA
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	GAGTCATCGTCCAGATATTTGGGTTTTTTCTTTAACCCAA
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC

>NZ_LT859958|4|3|1080609-1082561|CRISPRCasFinder
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CTTATAACGATTTTGGGTCATGGGTAGCTCCTTTCAAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	ATATCCAGTCCATTGCTTTTCTCCTTTTTGCGTATG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GTTCACGCTCATAATTTGCTCCTTTCTGTGTTTAGAGAATTAA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	ACTGCCAGCACCAGCAACCCCGTAGCGCAATGCTTTTTC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CCGAATCCCAAATACTACTCATAACATTTTCCTTTC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	AATTCTATTCCGTCGTGGTCTCGCCACGCCCCAGCGGGCAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GTGAAGGTTCTATAAAACTCGTTCACGGCTTGTGTGTTCAGGT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TTATCAATCTCGATCCAAATGGCATTGGATGCCGCTTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGTTAACCATGTGTCTTTCCCGTCCATGACGGGTTCCAGCGC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TTTCTTTTTATTGAATCTCTTGACAAGGGTTTTGTAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TACACAAAGGCGTCATGGTAAATCCGGTACTGGAACAACCA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GAGATACTGGTCAGGTTGCGGATGAACCCGACCTCGT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGCTTCTGGTCTACTCTTTTTGGCTTGTCTAAACTTGTTTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CATCACGCTAAAGATATACCCCTGGGCGTGTTGACTGC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TATACATAACATCACCTCCAGGTGGTGGCTCTACGGGTGGAGTA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GCTCTGTCACGAAACTCCGATTCACGTTCCTTCTCGATATTGATGCATTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CGTGAGGCAATCGAATATAAACATGCACGCCCCGCGCCGTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CTGGCTCGTCCACCTTCAACCAGTGTAGCAAATCACCATACG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GGTTTTCAGGTCAAAAAATAGAATATCTCTCATGATA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TCTGCCCAGAGGTGAGTATTTCATATTGATATACTCC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGGGGAAGGATGAAGTCGAGGTAAACTCCATCCAAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGACGGACGGATATGATTTTGTCTCGCACTCGCAGG
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	TCGGATATTGAAATACCCATGCACCTTTTTCGTACTTT
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	ATCGCTGGCATTTACCTCTACCTCCGCCGTTTTGGACGGA
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	GAGTCATCGTCCAGATATTTGGGTTTTTTCTTTAACCCAA
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC

>NZ_LT859958|4|2|1080609-1082561|CRT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CTTATAACGATTTTGGGTCATGGGTAGCTCCTTTCAAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	ATATCCAGTCCATTGCTTTTCTCCTTTTTGCGTATG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GTTCACGCTCATAATTTGCTCCTTTCTGTGTTTAGAGAATTAA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	ACTGCCAGCACCAGCAACCCCGTAGCGCAATGCTTTTTC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CCGAATCCCAAATACTACTCATAACATTTTCCTTTC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	AATTCTATTCCGTCGTGGTCTCGCCACGCCCCAGCGGGCAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GTGAAGGTTCTATAAAACTCGTTCACGGCTTGTGTGTTCAGGT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TTATCAATCTCGATCCAAATGGCATTGGATGCCGCTTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGTTAACCATGTGTCTTTCCCGTCCATGACGGGTTCCAGCGC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TTTCTTTTTATTGAATCTCTTGACAAGGGTTTTGTAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TACACAAAGGCGTCATGGTAAATCCGGTACTGGAACAACCA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GAGATACTGGTCAGGTTGCGGATGAACCCGACCTCGT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGCTTCTGGTCTACTCTTTTTGGCTTGTCTAAACTTGTTTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CATCACGCTAAAGATATACCCCTGGGCGTGTTGACTGC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TATACATAACATCACCTCCAGGTGGTGGCTCTACGGGTGGAGTA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GCTCTGTCACGAAACTCCGATTCACGTTCCTTCTCGATATTGATGCATTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CGTGAGGCAATCGAATATAAACATGCACGCCCCGCGCCGTT
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	CTGGCTCGTCCACCTTCAACCAGTGTAGCAAATCACCATACG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	GGTTTTCAGGTCAAAAAATAGAATATCTCTCATGATA
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TCTGCCCAGAGGTGAGTATTTCATATTGATATACTCC
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGGGGAAGGATGAAGTCGAGGTAAACTCCATCCAAG
GGTGAAATACAAAATGAGCCCTTCGGGGCATTGAAAC	TGACGGACGGATATGATTTTGTCTCGCACTCGCAGG
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	TCGGATATTGAAATACCCATGCACCTTTTTCGTACTTT
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	ATCGCTGGCATTTACCTCTACCTCCGCCGTTTTGGACGGA
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC	GAGTCATCGTCCAGATATTTGGGTTTTTTCTTTAACCCAA
GGTGAAATACACAATGAGCCCTTCGGGGCATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_157891718.1\|1098504_1098984_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861927.1\|1076001_1076271_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378900
NZ_LT859958.1\|WP_087861928.1\|1076517_1078320_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_LT859958.1\|WP_157891711.1\|1071167_1071851_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|372611
NZ_LT859958.1\|WP_087861936.1\|1093746_1095810_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|350194
NZ_LT859958.1\|WP_157891715.1\|1078271_1078994_+\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238828
NZ_LT859958.1\|WP_087861935.1\|1090969_1093744_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NZ_LT859958.1\|WP_087861937.1\|1096056_1096290_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861939.1\|1097478_1097871_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861930.1\|1078993_1080055_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_LT859958.1\|WP_157891716.1\|1082764_1083799_+\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|226612
NZ_LT859958.1\|WP_157891713.1\|1074004_1074523_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861938.1\|1097094_1097397_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861931.1\|1080064_1080352_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LT859958.1\|WP_157891717.1\|1098137_1098305_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087861933.1\|1084123_1087738_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223581
NZ_LT859958.1\|WP_157891712.1\|1072211_1073279_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|225500
NZ_LT859958.1\|WP_087861934.1\|1087883_1090970_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|368155
NZ_LT859958.1\|WP_157891714.1\|1075592_1076021_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|224511
NZ_LT859958.1\|WP_087863227.1\|1076348_1076480_+\|conjugal-transfer-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_087861927.1\|1076001_1076271_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378900	pfam12645, HTH_16, Helix-turn-helix domain. This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.	5.37455e-15
NZ_LT859958.1\|WP_087861928.1\|1076517_1078320_+\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	1.13105e-40
NZ_LT859958.1\|WP_157891711.1\|1071167_1071851_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.39823e-19
NZ_LT859958.1\|WP_087861936.1\|1093746_1095810_+\|ATP-dependent-helicase	gnl\|CDD\|350194	cd18807, SF1_C_UvrD, C-terminal helicase domain of UvrD family helicases. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. This family also includes ATP-dependent helicase/nuclease AddA and helicase/nuclease RecBCD subunit RecB, among others. UvrD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	4.18018e-18
NZ_LT859958.1\|WP_157891715.1\|1078271_1078994_+\|hypothetical-protein	gnl\|CDD\|238828	cd01651, RT_G2_intron, RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin. RT transcribes DNA using RNA as template. Proteins in this subfamily are found in bacterial and mitochondrial group II introns. Their most probable ancestor was a retrotransposable element with both gag-like and pol-like genes. This subfamily of proteins appears to have captured the RT sequences from transposable elements, which lack long terminal repeats (LTRs).	1.87129e-76
NZ_LT859958.1\|WP_087861935.1\|1090969_1093744_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	8.04707e-17
NZ_LT859958.1\|WP_087861930.1\|1078993_1080055_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.43871e-99
NZ_LT859958.1\|WP_157891716.1\|1082764_1083799_+\|restriction-endonuclease	gnl\|CDD\|226612	COG4127, COG4127, Uncharacterized conserved protein [Function unknown].	7.37138e-35
NZ_LT859958.1\|WP_087861931.1\|1080064_1080352_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.11556e-25
NZ_LT859958.1\|WP_157891712.1\|1072211_1073279_-\|YdcF-family-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.77368e-19
NZ_LT859958.1\|WP_087861934.1\|1087883_1090970_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|368155	pfam04851, ResIII, Type III restriction enzyme, res subunit.	2.3523e-07
NZ_LT859958.1\|WP_157891714.1\|1075592_1076021_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|224511	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].	1.29021e-10
NZ_LT859958.1\|WP_087861933.1\|1084123_1087738_+\|AAA-family-ATPase	gnl\|CDD\|223581	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair].	1.93483e-47

>NZ_LT859958.1|WP_087861931.1|1080064_1080352_+|CRISPR-associated-endonuclease-Cas2
MDEKHFLVVVYDLSNDRRRTKLHKLLKNFGSPVQYSVFECLLTNEEICEMKRRVKKIIRPKADHVRYYRLCKACKGKTEVIGRVEVLNEKDVIVV
>NZ_LT859958.1|WP_087861930.1|1078993_1080055_+|CRISPR-associated-endonuclease-Cas1
MATLYVTEQGARLEKEYHRILVTLDGEVIQAVLLRAISEVVLVGNCGATTPALLALLDAGVGLTFITQSGKLRGQLRSAQSSNLELRLKQYRRQQEEDFCLQVAKNITLGKIRNYRTMARRLLRSIRSAQIKTKYRPQKQSQETSKIATLESSISRFNDFLAQLQEAEKMDVIRGIEGTASKLYFSYLRSGLRWKGEQTFTKRERRPPKDPINAMLSLGYTLLGLCFESAIAVAGLDPQAGFFHTNRYGRPSLALDLIEEFRPIIVDSMVWRMVNHHMLTSSHFMIAEGGKTMLNRRGLKTFFRQFHRRINTKVFHPLAGRALSYQKCFEVQTNLLRKVIVGEEAEYLPMPWK
>NZ_LT859958.1|WP_157891715.1|1078271_1078994_+|hypothetical-protein
MLKKNGVWREISLLTVTDKVLQRAFLNVIEPEFEQRFLNCSHGYRRNRSTATAIQQLLANRDKGLVWLLDADILGCFDHIDHEILMQLFTRVVKEHFVIDLLQKWLVAGRRHRHQAIGIPQGAVISPLLCNIYLHQLDAKLSCARWHYIRYADDFVVMTTSENQALEARNLVSQSLAALRLVLHPDKTHISNFEQGFTFLGVEFFKNTYRYLWQDKKIQVEGKDLKMLYRYMPTFYSKGQ
>NZ_LT859958.1|WP_087861928.1|1076517_1078320_+|recombinase-family-protein
MNSVEVIKGQGLVARRGNSQEFERQRVAAYCRVSTDNEDQLSSYKSQVQHYTEYIKSKNEWVFAGIYADEAITGTQTKKREDFQRLINDCMNGEIDLVITKSISRFARNTLDTLRYVRMLKEKNVAVFFEEENINTLTMDGELLLVILSSVAQQEVENISANVKKGLKMKMQRGEIVGFQGCLGYDYHPEDKSLTVNEEEANIVRYIFQRYIEGTGCTILSNELKNLGYKTKRGLTSWPASTVINIIKNEKYKGDLLLGKTFTVDPISKRRLVNFGEEDKFYIKGHHDPIVSEEVFAKAQEILAKRGYPRRLNPDGKREKYSRKYAFSSLLQCGFCDTTLSRRSWHAGARHKKLIWQCTLATKKGKKYCPESKGIEESIVEEAFLEAYKLLCGNDKSIIDDFLALAEETLTEANVEKIISRTERDLVAAENKKSKLIDLRLEGTIDDDAFSSKLFDLDNNIDTLKSTLNDLSVTKNQQDDLRSRILGFKAILESNQVLEKFDRYVFESIVEKVVIGGYEEGGTPDPGLITFVFKTGYKQKLHKNNYGIVRRQFDQDGNAILPSSSSQTESFSASSYASANTSGLRCLKRTVFGVKFHCLR
>NZ_LT859958.1|WP_087863227.1|1076348_1076480_+|conjugal-transfer-protein
MLSKLLGNQLISQAEYTEIRQKLMNKYGILSEITIPSVYQNDI
>NZ_LT859958.1|WP_087861927.1|1076001_1076271_+|helix-turn-helix-domain-containing-protein
MTGQTFEPQTQHMRKLVPFRVIVCAVAKDPEAMDKVIAHYNPYIIHLSNRPTRDEDGYFVRLPNAEIEARLISRLIHAVVQFKIKTRSS
>NZ_LT859958.1|WP_157891714.1|1075592_1076021_+|sigma-70-family-RNA-polymerase-sigma-factor
MVPESCQLEVCLAFDTYCKRTLRNEAINAHKSINRRKQIILNFSDLPVEEEYLFVNDGTLEPEADHLISGKLISNQLLTASINKLPDQLRRIIHLYYFDEFNDRTISEMIQVPRSTVQYWRVSALSKLRHDIEKNADDWADI
>NZ_LT859958.1|WP_157891713.1|1074004_1074523_+|hypothetical-protein
MDETASTPAVADWETLYTEDNPVTDHQELIRILQDLKGRFLNQFDKPGWYQLVWLNEIYWIHISDPDSGRFDSVLHYSEHEKYNGYLRPWNFLSLDGHYGRMNSPSLNDFYFVPLETPPSETVWENLDYYLSCDFCVASEHLDFLIQWIRDPDNHISEKSLKQTFFRMDRGI
>NZ_LT859958.1|WP_157891712.1|1072211_1073279_-|YdcF-family-protein
MINNDTKELNLKLINIFAYVSLVISAACILLVTQTKFFQFPDSILSTATLILAVKFVLLSSLFIFMFRFFQRKKSKGEKDAFWTVMLILGLLLFIVSLLFFVFDKYAYIGPGVLRFSGFGSFSFVFISSLLFCAQFLFFQVIERIYRLEANHFLRKAMNIVITLTAVTCLLIVLVNITIGISTKNEIKNWENARYHHATVVFGAGVYQSGEISGVFMDRLKTASRLFHSGKTDLIIVSTSLDQPNEQELILSTLRSLEVPDGMIIIDSKGSRTLETCKNVFQEYNLSDINVVSQAYHLPRIIFTCRHTGVISIDGIIADNSSYSIQNQIIWYLREKVATMIAFVELIIFHESNSS
>NZ_LT859958.1|WP_157891711.1|1071167_1071851_+|thioredoxin-domain-containing-protein
MKKLEETNIYSVLVVVLLLLQIALTSVQIIKLNQYVALTLGPTKASLENQDIEFVEAIPISDDPYIGNNNDPVVTIVGFLDFSCQHCKSAYQAIMPLVYEHRDSIQFVLKDFPVKTPDIETSLLKITNCLPSQYIYWEFVDYIFSSDAPITDLNLISRVENLNIDHSMFNECVSNGNYITEVEQDISEGKKVGVIGTPTFYVNGYRINNWNSVPSIINMLLEINQSN
>NZ_LT859958.1|WP_157891716.1|1082764_1083799_+|restriction-endonuclease
MKFPSMWIIRAGKNDIAKDIFLTKNRIAIGWPKMGDLSQLKPNRDSFKQSLSEAYPETKVGAIPNTAGQLYRFVHKMIIGDLIVFPPITEQMVHIGLILGDYLYSPDVSLDFPNQRKVFWLKTVPKNMFSQAALSAIKPPRTLFKVINHSNEFIVVLEEEPMSAQTKRDGTLTSIVDNIKQITNNFVRKTLVEELKGCSFIEFIAHVLEKLGYHVLLPQTGQDQEIDIVAQKVELGFESPIIKVRTKSGDSKIDLSEVSQLFRNIGEKESGLFVTLGDYTEEALQFAALKTNLRLMKGSELINLIMSYYEELESRYKEILPLRKVYFPDALADQEDQLWKKPTG
>NZ_LT859958.1|WP_087861933.1|1084123_1087738_+|AAA-family-ATPase
MVHLSVRLAWNDIGWNGCICKEPHLNASCIGNETIRDERDDNLEREFAETHISKLDGWKPPCSRDILTYSSIGTQFTHSDPLHRKFLKPVQEEVSPYTSLPAPYRWLREETFRDICEAENLSIRLGDNSEKTTGWVYEPDRQLALLNQYWGKIKEGEGHSLIFFYVKENPVDEESPRLITGVGRLKKVGPQLFFEGTDSSQGHRYPIWTRAITQDYPNQGFRIPYQEYIQLEEDPKRIACYVPRESILQFSFVSEHITDDQAVGILERLIQSVHVIDQDKKVPGPWKRHLEWLDRCLEDVWASRGPYPGIGPVLNYLGFPQGMAFHRIELRNFVKEGKDPWHYVKAILNDQQQPPLKYMESFKQAKLRWKSFGRKPVRQELLDTLVKFELTCEQIRRIMNVDERKNAGIVATDEELIANPYFICESDLGSLKSNPISLDTIDRGMLPEGNFSYILSRSEQIAQDDSRRVRAVATTVLKEAAESGDTVLSVSELFEKIRARFPERRECKPDREIFEAEAEFHRQVLWLSFDEEPILAALRNLRDFESEITELIKRRVKRTNSPSTPPINWDAALSEAFGEPRTEREKAAHAEKILALETLFTQRISVLTGSAGTGKTSALRVFLDCLEKSEGRLSVRLLAPTGKARVRLSSATKRNSFTIHQFLLSLDWFLPDIFVLKPQGGGQVAPTTVIIDECSMVPTDLMGVLFRAIKMDMVQRLVLVGDPNQLPPIGPGRPFVDIINWLRENHPQCVAMLKTSMRIADDSDVGLGKSCGLAFADGYRDDLINPADDEILSDVARGIKKEDLEVHFWDDQDELKETIRKCLADVGIGDEGDYASFNQSLGITSKPGQQPHWKDAERWQLLSPLKGKGFGTEELNRMIQFGYRRGLITAAQTKPNIPRPFGNQQIVWSDKVIQIKNQKRFGWPRETGLDYVANGEIGIVTGTGKKQDGSYLQVGFSTQNGVTYRYSGVEVENVLELAYALTVHKSQGSDFEIVFLIIPKEAQTLSRELVYTGLTRFRKKLVLLIEGDTGTLEKLRLPEYSDTHLRNTMMFSLSLRAEDDRVLYPESLIHRTSVGVPVRSKSEVIVADTLTRLGITWEYERKLATPGDPRNFRLPDFTIGYEGDILYWEHLGMLTVPSYREGWERKRCWYEEQMGIPVIGEDVEAPQVEPGQFPIVITSRDNDDGGIDVPKIEGLIRKYILLEN
>NZ_LT859958.1|WP_087861934.1|1087883_1090970_+|DEAD/DEAH-box-helicase-family-protein
MEDRFFTQPVLNSPYEYPTRHWELDATGQPTQRIVERRRSAEFITPIPKPRRKKGSVGQMQIVFDEGKGLSTEDQTYDLTGTINLIRQLVDRWRMIPDPKKWLVTPETARLLQHWRKYPFNGIRPFFCQIEAVETLIWLTEVAPQAGRRERELLERLKDVSHDANPELERIALKMATGAGKTTVMAMIIAWQTINAVRRPTSSRFTKGFLVVTPGITIRDRLRVLQPNDPDAYYRDRELVPNDLLPELNKAEIVITNYHAFKLREKLDLSRGSRALLQGRGEALQTLETEGQMLQRVMPELMGVKQVMVLNDEAHHCYREKPNTDEETELKGEEREEASKNNQAARLWISGLEMVKRKLGINRVVDLSATPFFLRGSGYAEGTIFPWTVSDFSLMDAIECGIVKLPRVPVADNIPGADMPKFRNLWEYIGKRMPRKGRGKSGELDPLSLPVELQTALEALYGHYKKTYELWKEAGIVSPPCFIVVCQNTSISKLIYDFISGFERENEDGSLSFENGRLELFRNYDEYGNPLARPNTLLIDSEQLESGEALDSDFRKMAAEEIERFRREIRQRTGDQRAADNITDQDLLREVMNTVGKPGHLGEAIRCVVSVSMLTEGWDANTVTHILGVRAFGTQLLCEQVVGRALRRQSYDLNPDHADPFNPEGLFDVEYADILGIPFDFTAKPVVSTPQKPRESVHVRAVRPDRDHLEIRFPRVEGYRVELPNERLEASFNEDSVLELTPEIVGPSITVNAGIIGEDANLDLEHLDDLRLSTILFHVTKRLLYTHYRDKNHDLEMHLFGQLKRITKQWMENYLVCKGGTFPGQLMYQELADMACDRIHAGITRRFVGEKPIRAVLDAYNPQGSTMHVNFYTSKALRWQTDPRKCHVNWAVLDSQWEGEFCRVVESHPLVHSYVKNQGLGLEVPYRYGSTVRRYIPDFIVQVDDGEGDLLNMVVEIKGYRGEDAKIKKETMETYWIEGVNNAGVFGRWAFVELKNVWTMEEEFTAKLEGEFDKLVVAAINNKKNEVA
>NZ_LT859958.1|WP_087861935.1|1090969_1093744_+|site-specific-DNA-methyltransferase
MASKKSVDSFYHDEASRKYIPTAELEPLVRDQDKSPLLVAYERRNPDLDPQLVWRGKDLQDWSDLVVPAPPLYIQEKIHPKVLIDDLQRTAQEQGGVPQQLDLFADFNGLPSEAAKTEFYQHEANWSNRMILGDSLQVMASLAEREGLRGKVQCIYIDPPYGIKFNSNFQWSTTSRDVKDGNVQHITREPEQVKAFRDTWRDGIHSYLTYLKDRLIVARDLLKISGSIFVQIGNENVHQVRCLLDEVFGGNNFLSLIPFIKTSSKGAKYLDTIHDYLLWYARDKDNVIYNQLYKYRSRSSLDSGYGWVEENLQERRLTSKEKREIQKVSGKRFATSALISQSGGEKSSFPVECRGNVYYPSRNSFWKTNLVGFSRLSKSNRLVPVKNTLNYKRYSDDFPVVALTSWWGDTKESTFATNKIFVVQTYSKVIERCILMASNPGDLVLDPTCGSGTTAYVSEQWGRRWITIDTSRVALALARARLMGARYSFYILKDTYDGQLKEAEISRSLPFHEPVFGSIRQGFIYNRVPHIMLKNIAHNSEIDVIWEEYQDKMEPIRKQVNTILNENWEEWEVPREGKKTWPHEAKELHQQWWDLRMARQKEIDASIAAKSEYEYLYDQPYEDNTKIRVAGPFTVESLSPHRILAVDENDELIDSIAEGKAGYGEGQSFTQMVLENLKTAGVQQAHKEDKINFASLVPWPGDLICAEGKYYPGKEETGAQKRAAIFLGPEFGTVARPDLVAAAREAADAGFDVLIACAFNFDAQSTEFDKLGKVPVLKARMNADLHMADDLKNTGKGNLFVIFGEPDIDILQTEDDKIQIKINGVDVFDPSSGEVRSDNADGIACWFIDTDYNEESFFVRHAYFLGANDPYKSLKTTLRAEINEEAWESLHSDTSRPFNKPKSGRIAVKVINHLGDEVMKVFKV
>NZ_LT859958.1|WP_087861936.1|1093746_1095810_+|ATP-dependent-helicase
MRFIIADTFSDSLAKLTAQEQKAVKSTAFDLQIDPSRPDLQYHKLDRAQDPNFASIKVSRDIRIIVHRTKSSFMICYVDHHDAAYQWAQRRKLETHPTTGAAQFVEIRETVKEIVIPTYITKDHPKPPVLGHVKKDELLLYGVPLEWLDDVITATEDNIFELVDHLPQEAAEAVLELATGGIPIITTVATTVEDPFEHPDALRRFRVMDNIEDLEQALAYPWDKWTIFLHPAQKSVVEGHYRGPARVSGSAGTGKTVVALHRAVYLAKNNLHARVLLATFSETLANALKEKLRRLIHHQPQLADQIEVYSMNAIGERLYRRLFGVLKIAPREVIADLISQASKKVENHRFSDAFIMTEWEQVVDAWQLNTWEEYQNVLRLGRKIRLPEDRRKVLWSIFEIIRKALEDVGHLTYASMFERLTLHYKADNRSPFDFIVVDESQDISIAQLKLLGALAENQPDSLFFAGDLGQRIFQQPFSWKVLGVDIRGRSQTLRINYRTSHQIRMFADKLLDPEISDVDGNIESRAGTISVFNGPIPVIKTFASEEKEIDAVKEQVQRWIEDGLALHEIGIFVRSEKELRRAKLPVESLEHPYNVLDEMVSITEGFLSISTMHLAKGLEFRAVIVMACDDEVIPLQERIEMVADESDLLEVYNTERHLLYVACTRARDHLLLTGLEPVSEFLDDLRM
>NZ_LT859958.1|WP_087861937.1|1096056_1096290_+|hypothetical-protein
MGKLIGEVIGLISKNELEQGRPMLSAIAVGVSGKPSEGFFNWARELGVLEEGQDKETLWRNECEKVYEAWKISYRKE
>NZ_LT859958.1|WP_087861938.1|1097094_1097397_+|hypothetical-protein
MEIKVKILSKCQDCDGQAYLPSAKGIDSRGEEYQRYLPCPACKGTGQTEKWIALEELQTLLKGLECPHEHVSQIGSFHFSAGEVWDDIRDICDDCGQILD
>NZ_LT859958.1|WP_087861939.1|1097478_1097871_+|hypothetical-protein
MSNAVESPGDRSFGYSEGTATWATRYIDPSGFECMLSLQAESGLEALRKAESALAHLKDAQCIPLRKDSPESAKKSFNKPSGATVLIKPEGDEKNPTCPLHGVEMQKWSRNGRTWYSHRWEGGWCNGKQS
>NZ_LT859958.1|WP_157891717.1|1098137_1098305_+|hypothetical-protein
MRNQDVIEKIVPPIHQVETPKLQGSYPHARVKGRVVTTKVVGVTFEGRQEVVAWA
>NZ_LT859958.1|WP_157891718.1|1098504_1098984_-|hypothetical-protein
MTEKKTFRKASLQQVRQAGIYFSVAELNKRGVSATPVKKKSKIVIIADNHDKSRSITLRVKSKRSRVWQSSIMDGQPMMPKSDESNFWVFVSLGNYDEHPKFWVVPNWWIKNDIYLAHQEYLKKHGGTRPVTPDSTHHSIDESRLSEWQDRWDILDIFN

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Crispr_ID: NZ_LT859958_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_5

1599396-1599493

Orphan

Consensus_repeat	Method
ACAGGTTCTTCCACTGCAGGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT859958_5

>merge|NZ_LT859958|5|1599396-1599493|CRISPRCasFinder
ACAGGTTCTTCCACTGCAGGCGGTTCCTCATCCGGTTTTTCTTCTGCAGGTTTCTCTTCCGCGGGTTTCTCGACAACAGGTTCTTCAACTGCAGGCGG

>NZ_LT859958|5|4|1599396-1599493|CRISPRCasFinder
ACAGGTTCTTCCACTGCAGGCGG	TTCCTCATCCGGTTTTTCTTCTGCAGGTTTCTCTTCCGCGGGTTTCTCGACA
ACAGGTTCTTCAACTGCAGGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_087862337.1\|1594055_1595420_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340886
NZ_LT859958.1\|WP_087862340.1\|1600165_1602628_+\|DUF5110-domain-containing-protein	unknown	unknown	gnl\|CDD\|269881
NZ_LT859958.1\|WP_087862342.1\|1604626_1605520_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226354
NZ_LT859958.1\|WP_087862345.1\|1608871_1609303_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_LT859958.1\|WP_157891775.1\|1609589_1610507_+\|NAD(+)/NADH-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_LT859958.1\|WP_087862336.1\|1592262_1593819_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|238576
NZ_LT859958.1\|WP_087862348.1\|1611752_1614755_+\|DUF4981-domain-containing-protein	unknown	unknown	gnl\|CDD\|236673
NZ_LT859958.1\|WP_087862339.1\|1596863_1597988_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_LT859958.1\|WP_087862338.1\|1595691_1596864_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_LT859958.1\|WP_157891774.1\|1591374_1591833_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_162287667.1\|1584513_1585914_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|372650
NZ_LT859958.1\|WP_087862343.1\|1605512_1607120_-\|maltose-ABC-transporter-permease-MalF	unknown	unknown	gnl\|CDD\|236816
NZ_LT859958.1\|WP_162287668.1\|1602703_1603936_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|200477
NZ_LT859958.1\|WP_087862333.1\|1590526_1591300_+\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|234635
NZ_LT859958.1\|WP_087862332.1\|1589604_1590321_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_LT859958.1\|WP_087862335.1\|1591885_1592233_+\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_LT859958.1\|WP_087862347.1\|1610522_1611713_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223523
NZ_LT859958.1\|WP_087862349.1\|1615079_1616261_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862344.1\|1607197_1608799_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270304
NZ_LT859958.1\|WP_087862331.1\|1585989_1589601_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_087862337.1\|1594055_1595420_-\|MFS-transporter	gnl\|CDD\|340886	cd17328, MFS_spinster_like, Protein spinster and spinster homologs of the Major Facilitator Superfamily of transporters. The protein spinster family includes Drosophila protein spinster, its vertebrate homologs, and similar proteins. Humans contain three homologs called protein spinster homologs 1 (SPNS1), 2 (SPNS2), and 3 (SPNS3). Protein spinster and its homologs may be sphingolipid transporters that play central roles in endosomes and/or lysosomes storage. SPNS2 is also called sphingosine 1-phosphate (S1P) transporter and is required for migration of myocardial precursors. S1P is a secreted lipid mediator that plays critical roles in cardiovascular, immunological, and neural development and function. The spinster-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.36196e-50
NZ_LT859958.1\|WP_087862340.1\|1600165_1602628_+\|DUF5110-domain-containing-protein	gnl\|CDD\|269881	cd06595, GH31_u1, glycosyl hydrolase family 31 (GH31); uncharacterized subgroup. This family represents an uncharacterized GH31 enzyme subgroup found in bacteria and eukaryotes. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.	3.95559e-180
NZ_LT859958.1\|WP_087862342.1\|1604626_1605520_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226354	COG3833, MalG, ABC-type maltose transport systems, permease component [Carbohydrate transport and metabolism].	1.63098e-98
NZ_LT859958.1\|WP_087862345.1\|1608871_1609303_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.68978e-21
NZ_LT859958.1\|WP_157891775.1\|1609589_1610507_+\|NAD(+)/NADH-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	5.21469e-47
NZ_LT859958.1\|WP_087862336.1\|1592262_1593819_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|238576	cd01171, YXKO-related, B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.	1.01566e-68
NZ_LT859958.1\|WP_087862348.1\|1611752_1614755_+\|DUF4981-domain-containing-protein	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NZ_LT859958.1\|WP_087862339.1\|1596863_1597988_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.66552e-63
NZ_LT859958.1\|WP_087862338.1\|1595691_1596864_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.33204e-70
NZ_LT859958.1\|WP_162287667.1\|1584513_1585914_+\|peptidylprolyl-isomerase	gnl\|CDD\|372650	pfam13616, Rotamase_3, PPIC-type PPIASE domain. Rotamases increase the rate of protein folding by catalyzing the interconversion of cis-proline and trans-proline.	3.16213e-25
NZ_LT859958.1\|WP_087862343.1\|1605512_1607120_-\|maltose-ABC-transporter-permease-MalF	gnl\|CDD\|236816	PRK10999, malF, maltose ABC transporter permease MalF.	3.68638e-117
NZ_LT859958.1\|WP_087862331.1\|1585989_1589601_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_LT859958.1\|WP_087862333.1\|1590526_1591300_+\|segregation/condensation-protein-A	gnl\|CDD\|234635	PRK00104, scpA, segregation and condensation protein A; Reviewed.	5.15253e-45
NZ_LT859958.1\|WP_087862332.1\|1589604_1590321_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	7.05233e-101
NZ_LT859958.1\|WP_087862335.1\|1591885_1592233_+\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	3.79838e-14
NZ_LT859958.1\|WP_087862347.1\|1610522_1611713_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	3.03056e-59
NZ_LT859958.1\|WP_087862344.1\|1607197_1608799_-\|extracellular-solute-binding-protein	gnl\|CDD\|270304	cd13586, PBP2_Maltose_binding_like, The periplasmic-binding component of ABC transport systems specific for maltose and related polysaccharides; possess type 2 periplasmic binding fold. This subfamily represents the periplasmic binding component of ABC transport systems involved in uptake of polysaccharides including maltose, maltodextrin, and cyclodextrin. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.32469e-99
NZ_LT859958.1\|WP_162287668.1\|1602703_1603936_-\|hypothetical-protein	gnl\|CDD\|200477	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins. Cyclomaltodextrinase (CDase; EC3.2.1.54), neopullulanase (NPase; EC 3.2.1.135), and maltogenic amylase (MA; EC 3.2.1.133) catalyze the hydrolysis of alpha-(1,4) glycosidic linkages on a number of substrates including cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. Since these proteins are nearly indistinguishable from each other, they are referred to as cyclomaltodextrinases (CMDs). The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	1.27436e-86

>NZ_LT859958.1|WP_087862339.1|1596863_1597988_-|sugar-ABC-transporter-permease
MLNTKDSNSEKIGFLHWFSSTLGQILISLFVPAITFYVLWQGYIFLSKAQASQIVLVTVAIIWGVGGVALLYVVANWLVLKLPKPWSKRLQPFVFVGPAVVIMGWFLAIPVVRSLIASFHNNLGTQWVGLKNYVFAFTDPRMLETFKNNLLWLVFGTGFSVGIGLLVAVLADRSRFEVLYKSIIFTPMAISFVGAGVIWKFVYSYKGTGAGIQEIGLLNAIVIALGGTPHPWLTMAPWNNFFLIVIMVWLQTGYTMVILSSAIKGVPAELLEAARIDGANEIKAFFNITVPYIKGTLITVITTVVIFSLKLFDVVRVMTGGNNGTNVIANEFYLQMFTYNHAGRASAIAIVLLLLVTPVIINNLREFNKERKGF
>NZ_LT859958.1|WP_087862338.1|1595691_1596864_-|carbohydrate-ABC-transporter-permease
MAKSAKSQKRAQSFFINLVLIIICVAWMVPILGILITSFRHSEDIFKSGWWTVFPHRVEMQVARIKLNPDVDLDDIITIDATTATIEGRNAAGEAVEYSGSPIEGVSATFEEYREGIKLDDGRSLVWSGNRRSRELRVFDRQWIGFSTNLTLKNYKDVITGKNITYKDAEGRTITRTGNNLGGAFLNSLAVAIPGTIIPILIAAFAAFGFAWLEFPGRNILFTIIVALLVVPLQIALVPILKDYVNMGLNGTFLGIWLAHSGFGLPLATYLLFNYISTIPRELLESAFIDGASNFTIFIRLIFPLSVPALASFAIFQFLWLWNDYLVALIFLGERNKTVTIAVAQMVGEKGQDWHLMTSAAFVSMILPLAVFLALQRYFVRGMMAGSVKG
>NZ_LT859958.1|WP_087862337.1|1594055_1595420_-|MFS-transporter
MDETNTDFVDQSKPKVKSERKRTQTLMALAAGYFVDQGEGQAMSIFSPVLKTLWSLTNMNLAWITFARSLLQSLSSPFWGYLSDRYSRRKVLLIGTGLWGIWTIVVGFTQTYHQLLIIRVISGLGLGCLMPATFSIMADTFPPNVRGKMLGILEAIGVLGIIIFTIGLGAMATPELWRIGFYILGIASVLSGILIWFLVDEPVRGEAEPEMRGQLTQEDAERYKAKISDVKTLMKIPTIWVAIAQGLAGSMPWVVMGAFLILWLVEVRHVDTTQAPLIFGGVVIGTAISNVLGGIIGDYAEKVSPKFGRAFIGQLSVFLGIPFTYYLFTRTENWSLIKLAVLCFITALLISWPGKGSKEPMIQGVVIPELRSSAFSFITFIESGFAAIAALIFGILADKLDIQTAMLWTVPFPWLICGVLFSGFYFTYPKDSKILRDEMTRRAAELGIKNNMES
>NZ_LT859958.1|WP_087862336.1|1592262_1593819_-|NAD(P)H-hydrate-dehydratase
MKIVSVEQMKAIERAADASGVSYEMMMKNAGRGIANWISRNVSHRQGVIGLVGAGNNGGDTLIALTWMAKWGLRTQAFLVKENGNDALLDDYLSSGGAVVDISRNDRLDFFDAALIPGVVVLDGILGTGFRLPLRRPLHDVMVNIHKRLENRSDLLIIAVDCPSGVDCDTGEVSVATIPAAYTLTMAAMKQGLLSHPARSFAGDLHYIDIGIGDPSIYTKDGLSEMIDHSVIRDLFPRRPDSGHKGTFGTCLMIAGSAPYVGAAYFAGKAAYRMGCGLVHMGVVRDVHRLLAGRLLEAVWTVIPDIEGVFDPDGLQVLLSALQSATAIAIGPGWGVNESNILFLTDLLQHLPPSTPLLIDADALKLLVNLKQWWSLLPDQVVLTPHPGEMSVLTRLKTSEIQSNRWEIASEYAKLWRVNLVLKGALTVIACANGKMFINPVSDPALATAGSGDVLTGVIGGLMAQGVSAAHASVLGVWIHANSGKIARINCKTDMSVTALDLLDYLPGAIVKAKEAGY
>NZ_LT859958.1|WP_087862335.1|1591885_1592233_+|YtxH-domain-containing-protein
MSDSKDFGAFLIGFIVGGLTGAAVALLFAPQSGEETRELIHEKAIQLRDRTAESVEEARLQAEEAFIQAKQKAEEWTKLTKQHAEELLEKGEQVLEEGRDKLVEAIKPKEKPAEG
>NZ_LT859958.1|WP_157891774.1|1591374_1591833_+|hypothetical-protein
MNGEINNQLTTSTQENLGAVDESQATTQNTKKYLIAGILVAIVLIVLIVLATIYLVDETHQQRTEQIRDVFIIFLALQSLVIGIAMVVLIVQLSSLINLLQNELRPIINSTSETVNTLKGTAKFMSDNLAEPVIKLNQYAAMLKRIFKPSKN
>NZ_LT859958.1|WP_087862333.1|1590526_1591300_+|segregation/condensation-protein-A
MTFLYRPNSAYTIHTEIYEGPLDLLLDLISKAELDITRLSLAKVTDAYLAYLASLQEKSAVEISGFLVIAAKLIQIKSEALLPRQVERAEGEEDPAESLARQLMIYKSIKETALWLRHLEQKGQRTYIRLAPPPKIEESVDLSGVDLDTLIEMMKALYHFSEEAAPITTVITIPRVTIRNKISELIDQLRHQKRLSYRQMLPEEYDRIEAIVLFLAVLEMIKQQYANVHQEELFSDIQILATEKTFTDQKITLALDT
>NZ_LT859958.1|WP_087862332.1|1589604_1590321_-|ribonuclease-III
MTEDVKTESAEQFSKRLKLPFTDFFLLTRALTHRSYLNENKDAIEDNERLEFLGDAVLDFMVAEWLYHLFPEKPEGDLTRLRAALVHTEQLANFARKINLGLALQLGKGEIQAGGRERTTLLCDTFEALIGALYLYAGMPAVEAFMEPLLLEVVDSILQNHIAEDTKSRLQEWAQGRGLASPKYILVAEEGPDHNKTFEMEVRIGNKSYGRGIGSNKQSAEKSAAREALVSLGILEHN
>NZ_LT859958.1|WP_087862331.1|1585989_1589601_-|chromosome-segregation-protein-SMC
MENRLESIELQGVKTFATTTRLEFPGKITAIVGPNGSGKSNIADAIRWVLGEQSFSLLRAKKTEDMIFSGSQQRSRSGMASSTITFNNEDGWLPIDYSHVAITRQAYRDGQNEYILNGQKVRLKDISELLSQTGMSERNYTIIGQGLVDAALALKPDERRKLFEEAAGIGLYRSRKEDSLRKLENTRKNLDRVLDILTEIKPRLRSLERQAQRFQEYQQVKADLRLLLREWYGFQWHVKQQDLRKTRDAFHEQEVLVHSLNKLHLDAKTDVEGARARLQAYRKELEAFYGELSENHSLLEQTTRELAIIEERQRSYKQQKDNLDLDISNIEEEIKGIEAQGLALKAEIEQRQEEFHEGAEEERIFAQKLADVIKEREQIDFALDKLKVKRIQLETEKVQTVVRIDELENRVNALQNERDRVENAIETLQHQRNEANEQFLLLEKSSQTFTQKIEQQKNEIDEFKHQIERLNHDRLSITQQINHKDNQRTKLSTQLSLLQDAEKALSGYSEGSKKLLENSRQGRLPQGIEPISQHILIDEQYERAISAALGELTDLLAMPSQSKDKLIKYLEAKVDDRVALMPMDQSTQTIQKKDFHHLDGVIGFANTLVSVGKTYRNLVDALLSDILVVKDTETAEIIIGKSDLAIIVVTLSGIVFYPNGLIISGQSPSGKRIGRTRQQAELQSERVLVEKEIEELLDQQMRIEKSIEQLQAEQDELVQDFTLLERDWQVNEGKLQDAKDAHARLLEQERWNTDRLLALDADMIEVQSMIESGKRKLDDIEAEINRVLGEEKKINLELQAIPLFEIQQTLNQLKTQQIVAKNTLDSVQQRYQDISNRVDVSKQRFQELTNRRIEIAAELVEIEKRKRELTQKIEEIQLKINHLETEHVEPLSAIGVETEQSIVELQQIEAQSHQKVIIAERQYTQLQMELERRQDQLNLLRDRIGDDFGLVSFEGDQKYDGPMPLPFNDDLIEDLPQIAEIPESHEDDIKRLKGQLVRIGAVNPEAEQEYIEVKERFEFLTNQVADLEKASQDLQKVIEELDDMMEIEFVKTYQAVNKEFSAVFSRLFNGGEAKLIFTDEEKPVEGGVDIEVRLPGRRQQGLASLSGGERSLTAVALIFALLKVSPPPFCILDEVDAMLDESNVGRFVEELRELSEQIQVVIITHNRNTVQAADVIYGVTMGRDSTSQMISLKLDEVGDAYFA
>NZ_LT859958.1|WP_162287667.1|1584513_1585914_+|peptidylprolyl-isomerase
MAKQKPKKKIVTKKHLSREHREAKQTRILVIVSIAVGAIILGLVIYGVIDQTIIQPGIAVARVGDTKITVREFKPFVQYTRVQMLNQAYQYLNFFQQFGEYGSSFLDNARSIASELSQPVVLGRSVLDEMIDNIIIKEEAAKRNISVTDTEIDEAIQAAFGFFPNGTSTPTMTATIQPTATYSETLQALINTPTPVIEDSETTDLNGEPELDETDRAVVVEGEPAEEEVIDPKGDLVDLQAVESLALEGTPEATPTNTLTPTPYTTAIFGKNIKEFENQFKIYNFKIKDLRKVFAAQLLREKLTEAMDFEVETTKPEVWARHILVASEDYELGLDILARLREGENFYDLAALYSIDESNKDMGGDLGWFDKSTMVPEFSEAAFSLGEGELSQLVETTFGYHIIQVLGRRESPVSANEILQQRQQLFSIWLSDQRNQRDDIQIHDNWDQFVPITPEVPQQFLEALYQ
>NZ_LT859958.1|WP_087862340.1|1600165_1602628_+|DUF5110-domain-containing-protein
MKDHFQLDVKPHARKEAIIRKDTARFTLLTDQLIRMEYDPSQQFEDRPTQVFWYRDLPVPEFQVSIDHKLLTIETKKLILTYKFSEWGFHHDFLSITLKDNGNIWRYGQEDNFNLKGTLRTLDRLDGGLLTEPGLVSSTGWSVYDDSQSLVFDEDSWLVNRNSPPGTVDLYFFGYGKNYTQCIIDFQKISGRPPLLPRFALGNWWSKYWPYHQDELVALMNDFQERGIPLSACIVDMDWHIVDTGNESSGWTGYTWNPELFPDPPIFFEQIHKMGLKTALNLHPASGVYPHEAQYEQMANRLGIDPESKQPIPFNIADADFATAYFEILHHPLEDIGVDFWWIDWQQGRKSSLEGLDPLFWLNHLHFHDLARGGIKRPFIFSRWSGLGNQRYPIGFSGDALVTWKSLQFQPYFTATAANVGYGWWSHDIGGHMGGVEEPELYLRWLQYGVLSPIMRMHSTNSAYHERRPWAYDAEIERLATRALRLRHALIPYLYTAAWDNYREGVLPIRPMYHLYPDEKDAYLCPDQYYFGSELIAAPFVTPRHEDTRLSRQLVWLPEGHWFDFFTGDYYQGGGWYAIYGDLERVLAFAKAGGIVPLNAETHKNGVNLPEIFTIKIFPGADNEFTLYEDDGETQAYLSGDYALTNMQSRWEPEKLTFKINPAQGMQSLLPPVRTYNLQFHAITPPAKVMGWLNGNEIKLDGYYDQQRRHLITNGIRLSPRDELVVDVLGQGNLCHDEPQIKASVLYLLKQFKLNTYIKQALTDQIDQLLADPLALLHYADRMTDNQLLALVETWMGLYPEKMPVNPPEAFQKIINVFFN
>NZ_LT859958.1|WP_162287668.1|1602703_1603936_-|hypothetical-protein
MTEKLPYIKAMGFNAIWLTPIFVSPSHHGYDSSDYYKINPKFGTMDDFLELIDTAHFLQIRVILDFVANHCSNEHSFFKDAVNNHNSQYHDYFVWKDWPNYESFYNVRSMPKVNLAYGSPAREYMLNCAKYWLEKGVDGFRLDYAHGPEQDFWIDFRHVCETVNPDCWTFGEVVQPADIQASFAGGLMGTLDFVLCQALRSTFAQGKWSLAKFAAFLQAHFSYFSKSFNLPAFLDNHDMNRFIYAANHNEKLLKLALLVLYVLPGPPILYNGTEIPLSQRRSIHARDAQGFDEARLPMTWDLEKSFQFTEYLARLAEIRQKYPQLRQAEWTVNAFDEKKDMLVLSLGDSQDFMLLINRSPKEHQLLIQNPEYLSYQDLVDHTTYPNRNDELQINLPAQTGILLSAKNCTG
>NZ_LT859958.1|WP_087862342.1|1604626_1605520_-|sugar-ABC-transporter-permease
MSEKTQKTKHPRSMTQQRKIGTVIRWIIAAFLIFFSIFPLVWIISASLNPTGTLATARIIPKNPGFQNFKSLIGNPTFPFFLWFWNSIKITTITTFSTLFLTTMAAYAFSRFRFSGRTTMLKAILLIQVFPNLLSIVALFLILTQFGTIIPAIGLNTHLGLIIVYLGGAMGMNIWLMKGYMDTIPREIDESARVDGATDWQIFWRLILPLLRPILVVIGILSFIGVYGDFIVARTLLKTTELYTVMVGLQIYTSGMFSQKWGIFAAGALISAFPIMVIYLTLQDQIVGGLTQGAVKG
>NZ_LT859958.1|WP_087862343.1|1605512_1607120_-|maltose-ABC-transporter-permease-MalF
MMDSSRERLTKTAKKIHFELTSVLKIALLVVVDAGLIWFILQLLTNGFLPIAIVFIIILLFNTYVFLAPKAYPLRWMAIGLSALLLFSIFPIIYTTYVAFTNYGDGHLLSRTQAINQIQAETYLPEEGKAFEWIAYRSDVGEYMLWIKDAEGKALLVRQTDADYDEHILEVVPGESGIGELDEQGAPTTIDGFSRLNRIQAATDTNLTKVKFGEPEKTVQVRSPQEAAELLPRYHYDEEEDSFTDQLTGTVYFAKQGTYTSQQGRTLAPGFRAGVGISNFVNFLTNPALRGPLALILAWNFSFAFLSVFLTFSLGLAISILYGDPNFRGKKILRSLLIIPYTIPSLITILIWRGILNENVGIVNTVLRNLFNFAPAWTTNHWWARAAILLVNLWLGYPYFMLVTSGALQSIPSDIYEAAEVDGAKGWNVFWHITLPLLLVSVGPLLIASFIFNFNNFNLIYVFIGGGPPIPGASTRAGYTDILISYVYNLAFEGGRGVNYGFASAISIVIFILIAIMSLIQFRFTNMWEEVSENV
>NZ_LT859958.1|WP_087862344.1|1607197_1608799_-|extracellular-solute-binding-protein
MKKRFVLFAILMIASLMLGACKPKAKPEAPAVEAPVVEEPAVEKPAAEEPAKEEPAKEEPVVAPPSTPDATLRIWADDTRSAILAPLADAFLAEYNVKVIIEEVANIRDQFIIAAPAGEGPDITIVPHDQAGQLVASGLLAPIDLGSKAGDFVDFTIDAFTFDGQLYGMPYASENLAFFYNKDLVDAAPETWDELVVKGMELQDAGKVDWGFVLSGTTYDAFPLMTSQGAYVFGRDSAGNWLPNDIGIGGEGMIKAGKLMQEWIELEFMSPNTDWDTAHALFETGEVPWLMAGPWALDRIRAAGVPYAISDFPDGGLPFLGVQGFIVNALSENQLLAQAFLTEFVATKDVMYQLYEAGNRPPAYIPALELVDDEDMNAFGSAGTGAMPMPALAEMGSVWGAWNDAITLIIQGEMSPEDALTNAQHQIEELIGGALAGMVNVPGSWQAAAGCPGDWQPDCEATALKEVDGLYVGTFNLPAGSYEVKVALDGSWGVNFGVDGIADGDNYQFELAADGEVTFIYDPDTHLLEIKLP
>NZ_LT859958.1|WP_087862345.1|1608871_1609303_-|MarR-family-transcriptional-regulator
MQNNGRKLYFSLKSIFLHIDNQEKSLLAQYDLNIPRFYILMHVHEQPGVNYNELSDLMLCTRGNTTRVVRSMQKEGLLTRKVNNDDRRCYHLYLTDKGERIFTEVYIAYKQQIDRLLARFSEDELTSYTDICEHIEEVLTPIG
>NZ_LT859958.1|WP_157891775.1|1609589_1610507_+|NAD(+)/NADH-kinase
MPKRKKALLFFNSKSGHSREEYHCDLFRAFFDQKQIDLDLVYVPDEFERIRTRIDTALSEDVDFLIVAGGDGTVSMVGTHLVGKNASLGIVPLGTGNLLAKALHIPQDIEQALELIVSKNPNKVCIDTFKLDERNFLLNISVGLSPKLMDSVHSHQKQRMGVFAYLIYFFQQVLGLKLHKVFIDCDQRKFSVMASEVLITNISTAGVDPLTWSENIFLDDGIMDLLIFRAANVWDTIRVARSIIFHKEKINPLIKFFKVREYCVVETQAPMTTQADGDVIGKTPFKIEVIPNSLSIIAGNNPQEN
>NZ_LT859958.1|WP_087862347.1|1610522_1611713_+|NAD(P)/FAD-dependent-oxidoreductase
MKKYKYIIIGGGMTGAAAVMGIRENDPDGSIAVFSKEEFPPYARPPLSKGLWAGKEEKGIFRKLDELDVDLILDTTVEKISPDEKLVVTKKGKKYSYQKLLLATGGDPRHMPGAPADVIYYRTLDDYHKLKKETELKDNFCIIGGGFIGSELAAALTNNNKQVTMLFPEKGLSGTIFPENLSEYMAQYYRDKGVKVFTTHLVDSIVKEGDQFVVKYHSMENNEPGEAYFDAVIAGIGIIPNTALAEDSGITVDNGIVVDEYLQTNHPDIFAAGDVANFVHIPLGQRMRLEHASNAHLMGLLAGKNMSGEKLPYDNFPYFYSDLFDMGYEAIGDTNIRLDIFEDWIEPFKKGTIFYLNEGRIRGLIFWNLWDKVEQGKEVISSGKVFHKADLPGMFQ
>NZ_LT859958.1|WP_087862348.1|1611752_1614755_+|DUF4981-domain-containing-protein
MLDIEDPGQPQVNALPGHTWFIPFDDLNTPIPLFPIDSSRCMLLNGQWDFIYLDSHKALPQKPQDLFLRNGCIGVIDVPGCWELQGYGRPQYLNITYPFPIDPPFVPDANPTGVYHRRFSLPASWHDTQIVVTFLGVSSAFDVFCNDHYVGGAKASHLTSEFNLTPYLDSIGENRLMVVVYQWSDGAYLEDQDMWRLHGIFREVYLTARPRRHILDAIIDVDYDHLHSVGTLNARFITNDDRPLPLRVMLCDQAGKIIFSMSAESHSPLSKEIPDCQPWTAETPFLYTLFIETLDDDGLPLEIIGFHVGFKRIQIRDQQLLLNGRPIKLKGVNHHEFDPDTGWTISPTRMEQDIRLMKRHNINAVRNSHYVNHPYWYALCDRYGLYLIDETDLETHGFEFVGNRSALSDSPDWKEAYLDRARRMVAQNRNHPSIVFWSLGNEAGFGENHVSMAEYIRNVDPSRPVHYESAGTEAAVDIVSVMYPSISELKKAGENPESDPRPFFVCEYAHAMGNSPGSLREYWELIYKYPRLIGACVWDWVDQGLRHRTLEGETTFYYGGDYGDNPNDANFCINGLINPDREPHPGLYELEYWIQPVSLLEYDSQANRIRLQNRYDFLSLEHLQCFCTLKAEGTLLAESEIPLDSSHQPGEISLTIPGFDITLPPDKETWFEIVFKQKTSTLWAEASHVVARDQICIQEGVVNRKYSVTTNDQPCSWQVSENEHRIIVEDEQQAFEIDRITGWIDAWRVNRAPVFIEPLCLNIWRAPTDNDVHIAKEWLYDGLDRAIFFRNQVELISNNDGCVSIRVEGKLATAGDQPIAHCELIYSFLQNGLLEIDLNFVPMHINTRLPRLGFKTRLHQDYQRVTWYGRGPHESYSDRKDSAFVDLHTAKTVDLFHPYIMPQENGNRTDTRWLKLYGNDVPPVRVLGGPSFDFSIHHCSLTNLTNARHIDEVTFQADPWLYIDLAQTGLGSNSCGPDTLLQYRLEPRPYQFKIRLCPCS
>NZ_LT859958.1|WP_087862349.1|1615079_1616261_+|hypothetical-protein
MTYNPDGNSLFIMGHNRMPYGDLPDGNQVAEISIPEPVISKNIEDLNTAEFIQDFKNVLKKQFSEYDEIPKAGMQYLNRPETGAKIHVAFGEHLQSEQIPTHGWFSPTLSKPDFQGTWFIGNQDLYSVNDYMFEIPATWADAYADGRPLGTGRMRDGGQGGMGPTLFAYCPWNEDGSPHPAGTRLEEITLLLYENAYNTEEFIRSLDGYQHPDEWGGGAWLTTSGDKAAVLFAGTKSNGEKYWYGYIHPDGPNLVCVDAEATDFPTCRMANGSLCPQDDFSGCCDAAAGECVSSRGWWTTQFDAEFILYDPADLAMVATGQLEAWQPQPYAVVDIDERLYLNPPEWDLVDVGWGVQRRNRIGDVAFDRQNGLLYVLELYADGAKPVVHVWRIR

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Crispr_ID: NZ_LT859958_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_6

2102253-2102362

Orphan

Consensus_repeat	Method
GCAAACAAAGACACACGTGAAAACCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT859958_6

>merge|NZ_LT859958|6|2102253-2102362|CRISPRCasFinder
GCAAACAAAGACACACGTGAAAACCCCGAGGGTCTGAAGAGAAAAAGCGATTCGTTCTTTTGAAATTAACCCCAATCAAATCGCAAACAAAGACCCACGTGAAAACCCCG

>NZ_LT859958|6|5|2102253-2102362|CRISPRCasFinder
GCAAACAAAGACACACGTGAAAACCCCG	AGGGTCTGAAGAGAAAAAGCGATTCGTTCTTTTGAAATTAACCCCAATCAAATC
GCAAACAAAGACCCACGTGAAAACCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_162287697.1\|2103687_2104371_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_LT859958.1\|WP_087862738.1\|2109778_2111683_-\|potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|368811
NZ_LT859958.1\|WP_087862731.1\|2101154_2102129_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862727.1\|2096138_2097218_+\|TRAM-domain-containing-protein	unknown	unknown	gnl\|CDD\|227292
NZ_LT859958.1\|WP_087862725.1\|2094843_2095449_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_LT859958.1\|WP_087862729.1\|2098666_2099398_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|349976
NZ_LT859958.1\|WP_087862741.1\|2112920_2114132_+\|DUF711-family-protein	unknown	unknown	gnl\|CDD\|377478
NZ_LT859958.1\|WP_157891817.1\|2095547_2095835_+\|YgiT-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|274806
NZ_LT859958.1\|WP_087862723.1\|2091996_2093226_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227193
NZ_LT859958.1\|WP_087862737.1\|2108329_2109553_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT859958.1\|WP_157891818.1\|2114765_2115608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862740.1\|2112123_2112921_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_LT859958.1\|WP_087862728.1\|2097262_2098663_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_LT859958.1\|WP_087862724.1\|2093397_2094768_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_LT859958.1\|WP_087862736.1\|2107194_2108202_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT859958.1\|WP_087862734.1\|2104794_2105790_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT859958.1\|WP_087862730.1\|2099503_2100781_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_LT859958.1\|WP_087862743.1\|2115519_2116431_-\|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|234605
NZ_LT859958.1\|WP_087862735.1\|2105847_2107122_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT859958.1\|WP_087862722.1\|2091103_2092000_+\|TIGR00159-family-protein	unknown	unknown	gnl\|CDD\|224539

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_162287697.1\|2103687_2104371_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	2.49841e-06
NZ_LT859958.1\|WP_087862738.1\|2109778_2111683_-\|potassium-transporter-TrkA	gnl\|CDD\|368811	pfam06241, Castor_Poll_mid, Castor and Pollux, part of voltage-gated ion channel. This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.	1.26511e-22
NZ_LT859958.1\|WP_087862740.1\|2112123_2112921_+\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	7.57368e-63
NZ_LT859958.1\|WP_087862727.1\|2096138_2097218_+\|TRAM-domain-containing-protein	gnl\|CDD\|227292	COG4956, COG4956, Integral membrane protein (PIN domain superfamily) [General function prediction only].	4.98028e-115
NZ_LT859958.1\|WP_087862725.1\|2094843_2095449_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.3956e-56
NZ_LT859958.1\|WP_087862729.1\|2098666_2099398_+\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|349976	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB. 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	4.86673e-62
NZ_LT859958.1\|WP_087862741.1\|2112920_2114132_+\|DUF711-family-protein	gnl\|CDD\|377478	pfam05167, DUF711, Uncharacterized ACR (DUF711). The proteins in this family are functionally uncharacterized. The proteins are around 450 amino acids long. It is likely that this family represents a group of glycerol-3-phosphate dehydrogenases.	1.06799e-94
NZ_LT859958.1\|WP_157891817.1\|2095547_2095835_+\|YgiT-type-zinc-finger-protein	gnl\|CDD\|274806	TIGR03831, hypothetical_protein, YgiT-type zinc finger domain. This domain model describes a small domain with two copies of a putative zinc-binding motif CXXC (usually CXXCG). Most member proteins consist largely of this domain or else carry an additional C-terminal helix-turn-helix domain, resembling that of the phage protein Cro and modeled by pfam01381.	6.42926e-08
NZ_LT859958.1\|WP_087862723.1\|2091996_2093226_+\|hypothetical-protein	gnl\|CDD\|227193	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown].	5.10691e-24
NZ_LT859958.1\|WP_087862737.1\|2108329_2109553_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.22332e-31
NZ_LT859958.1\|WP_087862728.1\|2097262_2098663_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_LT859958.1\|WP_087862724.1\|2093397_2094768_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_LT859958.1\|WP_087862736.1\|2107194_2108202_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.23147e-05
NZ_LT859958.1\|WP_087862734.1\|2104794_2105790_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.44231e-10
NZ_LT859958.1\|WP_087862730.1\|2099503_2100781_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_LT859958.1\|WP_087862743.1\|2115519_2116431_-\|SurA-N-terminal-domain-containing-protein	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	2.10469e-13
NZ_LT859958.1\|WP_087862735.1\|2105847_2107122_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.46423e-53
NZ_LT859958.1\|WP_087862722.1\|2091103_2092000_+\|TIGR00159-family-protein	gnl\|CDD\|224539	COG1624, COG1624, Uncharacterized conserved protein [Function unknown].	2.0468e-71

>NZ_LT859958.1|WP_087862731.1|2101154_2102129_+|hypothetical-protein
MPSKTQNKNATKISAVIGFIILTITATVLLVNAVIQSFPIHPAAGIAVILIAIGTYFTIFTEGKTILKADFGSVDFSTKLFEFIAVFVGGILSFYLNNNLGLGLVVGSALVGLLAVVVAPKYAVPAYCGSFAGMSSAALFPKYHGIILASAIAGLIYVICRDIFGGFGGKLGAMSFISAIAAGLLLSGTFATAPIPNWNTSLWILLTAFIAAPLTFYLNTVLGKGPVLASTLIGLLAGLTLPVLVPGIGTQLGVVAICASFTGMSNEKRSPKFWYMLLAGLFTGFLFILSTPLLGGCGGKLGTTAFVSIMAVNGLTGLVNKIRK
>NZ_LT859958.1|WP_087862730.1|2099503_2100781_-|serine--tRNA-ligase
MLDMKLIREEPERVREALEKRHMDPSPVDDILLLDEQRRQLIQDVEEMRAERNLVSKEISKIKDQVQRKEKIEAMRHLGDQIDETGNRLKVVEGKLNTLVSELPNIPDPDVPVGVDDSDNIVIRTVGDLPKFDFEPKPHWDLGPELGIIDFERGVKLAGSRFYVLSGAGARLQRALIFWMVDLHIRQGYLEKYPPLMVRGDILFGSGQLPKFKDNLYKDHEEDLWWIPTAEVPLTGLHMDEILDEEQLPLRYTAYTACFRREKVSAGRDVRGIKRGHQFDKVELYTYCLPENSATELERMVSDAEETVALLGMPYRVLLQSTGDLGFGSHKTYDIEVWAPGCGEWLEISSISIVGDFQARRSGIRYRPSDGKNTRFVHTLNGSGLGLPRTLIAVLENYQQADGSVAIPEVLLPLMGGETVIRRES
>NZ_LT859958.1|WP_087862729.1|2098666_2099398_+|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MSEWITGRNPIYEVLRSKRRQINRLWLAEKLQPSDRLVEIIHLARALRIPIEQVMRANLDGIDPHHQGVALNVSSYPYSDLESIIHTAKIRGEPVFVLLLDQVQDPQNLGALLRSAEAFGVHGVVLPLARSAAVTPAVVSASSGATELLQIAQYNLVQAMDHLKEAGGWMIGLEDSPRAQPPEKVNLSGGIGLVVGNEASGLRRLVKERCDLLMRLPMQGQIDSLNAAVAGSIALYLARQARG
>NZ_LT859958.1|WP_087862728.1|2097262_2098663_+|cysteine--tRNA-ligase
MTLRIYDTLTRSKSEFKTIEEGKVRMYVCGPTVYDSAHVGHAMFALVFDIIRRYLIYRGYEVNYVMNFTDVDDKIIDRANRLGVDPFELAEKYIEEFKHNLRDLNILPASENPRATNEIDTIIKMVSQLIEKGSAYEVDGDVYFRVETAKDYGKLSGRKLEEMNAGSRIRVDERKENPMDFAVWKKAKPGELAWDSPWGPGRPGWHIECSAMNLSHLGEQIDIHGGGNDLIFPHHENEIAQTEAITGKPFARYWMHNGMLQLKGEKMSKSTGNLVPISEFLNEYSGDVLRLLVLSSYYRSPLTFNSEVIEANQRALERLLSALRPAQPGAAGASKAVLGVLAEQLEATQQGFVESMDEDFNFAGALGHIFDLVRAINQARAEQATDEQLAPAQTGFKLLTDVLGLELKTPELTTTGADAFIDLILALRKELRQKKLYELSDHVRDELMKLGVIIEDTPQGSTWRWE
>NZ_LT859958.1|WP_087862727.1|2096138_2097218_+|TRAM-domain-containing-protein
MSIELISRIIGLIVFGSVGTFFGHNLGIMLQRSLSIEPLPIIVYRIGSAVIFAILGFIITPWITVKPIKSLRKNLSNLSAQTLIFGIIGLVVGLVLTLLLAYPMSLLGPPFGNILPVISAVVLGYLGLITFVARQKELRTFFRIGSRSRASDGGSIDSTSTVDSCRILVDTSTIIDGRIYDIARTGFLPGQLLVPRFVLNELQYVSDSADNLRRQRGRRGMEVLSELQKDPNIPITITDIDVEGVREVDDRLVVLARQLNCPILTNDYNLNRIAELQGVSVLNINELANAVKAILLPGESVEMAIIQDGKEYGQGVGYMEDGTMVVVEDGHDFIGKTIRVTVTKVLQTAAGRMIFAKPD
>NZ_LT859958.1|WP_157891817.1|2095547_2095835_+|YgiT-type-zinc-finger-protein
MQTHSSENHESYPCQKCQGGRKHRQTITLMTWLGDDLITVPDFPAWICDLCGHRLYDSHALAQLSLLLNPDVGTPIQHRLINTRKKPTANYPPFA
>NZ_LT859958.1|WP_087862725.1|2094843_2095449_+|signal-peptidase-I
MLDTLQSEPTSANPADGSSGKSKRSGCLGFFIDTVETILLALVLFLAINALSARVRVENVSMKPTLQEGEFLLVNRVAYTFGQPSIGDIIVFHAPGASDMDYIKRVIGLPGDQVRITDGIVYVNNQPLYEPYIAESPRYTGTWDVPQNEYFVLGDNRNNSSDSHMWGFVPHEDIVGRALLIYWPLSEITLLRSSGIVTAIQ
>NZ_LT859958.1|WP_087862724.1|2093397_2094768_+|ribosome-biogenesis-GTPase-Der
MGKPVIALVGRPNVGKSALFNRLVGERLAIVDEIPGTTRDRLMAEADWSGYYFYVMDTGGIDPTKGKDQAPLSIGSKAFIQEIRAHAERAMEEADLILFIVDGQAGITPADQEIAEILRRKQRTVEGRLYPPVILVVNKAESAKIRQVAADFYQLGLGDPYAISALHGTGTGDLLDEVVRYIAEFGEDTEEDLSTKIAIVGKPNVGKSSLLNKIIGEERAIVSEIPGTTRDAIDTKLEFQGYPITLIDTAGIRRRGKVEPGVEKYSVIRSMNAIERADVAILVIDATTKITAQDTHIAGYIKDAWKSALVVVNKWDLIEKDTYTINEYTEQIRQELNFMPYIPLVFISSLTGQRVDRVLPLALRVQEERLVRLSTSQINRIIQAAQDRHPAPSRSGRSLRIYYGTQVRNDPPTFMLYVNNPEYAHFSYLRFLENQIRKEYLFIGTPIRLVLKKRRE
>NZ_LT859958.1|WP_087862723.1|2091996_2093226_+|hypothetical-protein
MKHFRRIIRSLPTLLTALVFATIVWIYAVTLADPTETRTYPRPLPMEIIGLDPDLTIINEITQQVYLTIRAPSSFHTQLENDINLIDVVLDLSGLESGVHILTPQVNLALSPAEITRVMPSNVTVKLDAIVTESFPINLKVVGNPTIGFETQTPVLSDQNVFISGPRSLIETIDHIDAEINISDATEDVQRMIELTPLDAEDNPVTGISLNPASIQVTVPVTQRGGFRTVVVKIVTSGQVAPGYRLTNIFSSPPAVTIFSADYDLVDSIPGYVETAPINLNMASEDIEIRVALNLPEGINVVGSQNVTITISIDPIESSIRFVNVPIQIRGLGAGLAVEISPESVDIFLSGPLPLLDGLSLEDIFVLINLSDRGPGTYQLAPTVLLENNLISVDAILPSSIEVTISEAK
>NZ_LT859958.1|WP_087862722.1|2091103_2092000_+|TIGR00159-family-protein
MAQFLNDLSFLIQRFGWTDLLDIVLVGAVFFIVLMFLRDTEALVLLRGVFFIIVLLALFTSLIELPAFSWLIRTVLPALVFAIPVIFAPEIRRTLERVGRAGNISFLIRTRNITEKQFLETLDAIIKASGRLSERHHGALIVIQRNQGLSEYVNTGVSLNAQVTPELLLQIFYPNTPLHDGAVIIVNDRLVAASCVMPLSSSGVLNRSLEHTLGLRHRAALGITEVSDAVAVVVSEETGSISIAQDGKIFHRLNMERFQHTLLAFFQATDLKREKSLTARLLSLFTAGKGVDKEGDEL
>NZ_LT859958.1|WP_162287697.1|2103687_2104371_+|LysM-peptidoglycan-binding-domain-containing-protein
MGNNMSIQYCVYTTWSDWVHLQTMTGYASGRVGAGVSSANGIVYYTLNVLPNETVVRQPTTASSNNNPAQPADSSPPSLLVSASQVIIATPNPDGSVIHTVRYGETLWAISEAYDIPIDQILTNSGLSLGTTQVLEGQDLVIIPPADPTVTPTITATPTPPTPTPTQPRPTMTPFPTRTPMPTLTPTTPPSALHRALSNGKNLGLGLILTSGLGIIVVVYLGFLKKR
>NZ_LT859958.1|WP_087862734.1|2104794_2105790_+|GNAT-family-N-acetyltransferase
MESKTIKRLRPFTLADAQEVTHLFNICSRATSGNDEFELESMINDWKTPGFDVEKTVRVLENEQGQIIGYIEVWDSSKPHVNKSVYGLLHPDHWDDDQFRTLLSWAETCARERISLAPDGSRVVMMHYTPNNDLQRKKTLEAYGFSLVRHFYRMEIELGSNPQSPVLPEGIKVTTIDINTELKAALLALDDGFKDHWGHVDRPIDDRLVEWQHYLQTDKNFDPTLWFLAKSEGQIAGVIRCNPRTVEDPQMGWVFQLCVRQPWRHQGLGMALLLTAFAEFYRRGNKRVGLIVDAASPTNATRLYEKAGMHIARQTDTYEFELRPGERLDTA
>NZ_LT859958.1|WP_087862735.1|2105847_2107122_+|MFS-transporter
MKTTNTILQKKTKQRILSNTLIVFMVAMVFANVASEMYMTMLPLYMRYLGADVVQIGIFFTVSQIIPLILQVLGGWVSDTIGRLRSVALGSVIGLGAFISPIFVPTWQWLYLTEGLNAMTRSLIGPSFGAFIAEETSEEHRGKVYGMTDTIYSVVTVIGPPLAGWLADTYGFRIMLTVAAAIYICATIIRVFLSKIAVKRHPDISRESFSFKTMRNNFKTIFGLAIAGGVLTWLLLTDGVRDIAFSLSFRLMPVYLEDIAGLNLQQIGWLTSFFGIAMMLTTIPAGWFADRFSERAAIALGFILEFVALIMMINLEAFIGFAAAWIIFGVGVGLLSPAYQSLLSKALPERLLGTGFGLIHASLGIFSLPAPAFGSFLWKAISPQAPFYITAVFALITVIPAWLKFKLSAHDLERAAQANGNHQH
>NZ_LT859958.1|WP_087862736.1|2107194_2108202_+|GNAT-family-N-acetyltransferase
MMKKLEILIASPPKIDGLRFRKFAGESDFPAMLHIIEAGAIADQEKIRDTLDDLKHAYTHLRNCDPYQDMIIAEINGEPIAYSRVEWWQEEDPQVRVYGYFINLLPEWRSQGIETAVIGWSEARLRDIAAEHPREMPKYFQIGSSESKVWLNEIVESLGFVAERYFVEMSRTLEDIPAAELPAGIEVRPVIKGQERKIWDASCEAFRGHWGIVQPEDHHYQEYASSKYFQPDLWQVAWHGDEVVASVLNYIDHDYNQKNHCLRGWTEDISTQRKWRKRGIATALILRSLHMHKALGMTEVALGVDTKGLSGALDLYLNLGYHIDKTYIWYRKPLA
>NZ_LT859958.1|WP_087862737.1|2108329_2109553_+|MFS-transporter
MSLKLNRNAKLFLLSTLLYGFSFSVWELFFNLYILSLGFNNDVLGLIRSATPLAALLLGLPLGLLSDRIGRRTSMLVGLGIDFVGMFMQIRLPNPIPIFLFGMVQGAGFMLYSVSHPPFMMTLSEKENQAMIFGLNVGLHTIATTIGNLAAGQVPALLERWLNITQDTPASYQWVITAGILLAATSLVPVFLIRENKTNANNKQSRPPLNAIIRELTSRPVVRQLTTVNLIQGFGAALLIPYLNVFLRGKFNISDDLLGLIFSISSLFVFLGTMISPWLARITRSRIIPTAVTQSLSLVFLFSLGFSPLQWLAAVSLLFRNVLMQMSTPLLDNFAMLVSQPEEQGAVAGIRGIGWQAGQVFGILISGLIQTRFGFSPLFITTGLLYFITIILTWVHFRPLEKDKSFG
>NZ_LT859958.1|WP_087862738.1|2109778_2111683_-|potassium-transporter-TrkA
MKAKSHYVEKIRYKLDTMFSKGTWMTIFWLGMFSLAFIIFFSLVIVIFQIKAEGESVLPLSEAIWQSLMRTLDAGTMADDAGWGFRLIMLLVTLGGVFFISTFIGLITSGLEQQLDNLQRGRSRVIETGHVVVLGWSEQVFTIIEELVIANENQPEGCIVIMGPGDKVEMENLINERIPDTGNTKIVVRSGDPLDMSSLNILNLDNSKAIIVLSSQGDDTDSEVIKICLAITKRPRKNGKSYHIVAELRDLKNKQVAELIGGNQIEWILSGEIIAKVIAQTCRQPGLSIINTDLLDFSGDEIYFYQDPQLVGKRFGDTLPLFEKNAVMGLWKKGGIPELNPEMNSILEEGDQLFLLAEDDDQIFPDYSIKSLVEEDKIVTVEPQPAEPEKILILGWNWRGPLIVKELDQYVAPQSMVKIVCNLDIGDCLKGFELTGFKNLSISHQVGDTTNRALLDQLASENFDEIIVLCYSECLPVQVADAHTLITLLHLRDIAVKNPKIKYSITTEMLDVRNRNLAEIAKADDFIVSDKLISLMFSQIAEQKALNAVFTDLFNPEGSEIYLKPMGDYVALETPVNFYTLIESAKRKSEIALGYRITREHDNPEKNYGIVLNPKKSESMRFTEEDKLIVVAES
>NZ_LT859958.1|WP_087862740.1|2112123_2112921_+|RNA-methyltransferase
MKTIIASTSNPKIKRVRALQTQSRKRKQENAFVAEGTRLIEEVIAAQWPLEFILYDQTLSERGKNLIASLPASDLNAVHQVTPGIMAAISDAETPSGILAVLKSRVLPLPTAPTFVILADQVRDPGNMGTLLRTAEAMGAECIITTPGTVDAFAPKVVRSGMGAHFHLPIHSLPWHAIHQYLRGLPVILATTDSDTSLWDVDFSKPCALLIGGEAFGASPLGEEIATRRVAIPMTGRAESLNAAVAAAILMAEVLRQRSTPGKEN
>NZ_LT859958.1|WP_087862741.1|2112920_2114132_+|DUF711-family-protein
MRIRSITCFVHPRWPVSELVFQKAGLFARMARQSFENAGYAVQTVRMATPPFAEFITEQDYAQAGTHIDVIAHSEGFEYVSLGPALTGVPQSYAAIPELLSRSGNLFFGGHLTTPNAEVSLSAVRACAQVIHQAATLEANGFANLRFAALANVPPWAPFFPAAYHQGKSPAFALALEAADLAVSAFTEAQSLQDARQKLVDRIEAHARDLQTIAQRLADAYGVEFKGLDFTLAPFPQPDKSIGVALELLGLPALGLAGSLAASAFLTETLDQAVFKRSGFNGLMLPLLEDATLAARGAQGVLGVNDLLLYSAVCGTGLDTIPLPGETSVEQLSALLLDLAALALRLDKPLTARLMPIPGKAAGDDTNFNFEYFANSKVLALPAEPLTGLLSGDENIAIQHRVD
>NZ_LT859958.1|WP_157891818.1|2114765_2115608_-|hypothetical-protein
MPELRWHGKPCTIGWQTGERTVLSRSSSTDMSSRQPPHYPQSQAKRREPKAVPSMATPRGAYPPKKPGFLAWLFVFAILGGLIWLFMLIFALGPYADENPPTPHPTSIAILPPSSMITQVPTITATGVAPTVLTPTQTLSYTPTISPSPTPELFPFILIGEPEMMSSDLLRPSLGCDWLVVAGQVWDLQDRAVKGLELNLTGELEGYLIDEYSVTGSAPVYGISGYEFLLENLVVDSQDALYIQLVDADGAPYSLAYPLQTFQDCQRNLILVNFKQVRSE
>NZ_LT859958.1|WP_087862743.1|2115519_2116431_-|SurA-N-terminal-domain-containing-protein
MHAVKWTTTKPIIWLLVFIFFLTACTQPIDTTPEVEPSPPQVFPTITPTIADPTATPQPAAAVVNGERIPLVVFEREVERYLLTQNALGNQNPDLDHARETVLNDLIDQVLLAQGAREAGTEFGEAEVQARLDELAEDVDLEAWMADWGYTRDELFESLRLQMLVADQRQRIVDTIPEAVEQVELRQVLTFTEEGAKRALAKLNSGTPFKDVAFEFKPETGGYLGWVPRGYLLISAVEEAAFNLAVGSYSEIIASDIGYHIVLVIDRDVRPLSVDARITLARQALYDWLADRRANSVIEIIID

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Crispr_ID: NZ_LT859958_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_7

2114348-2114442

Orphan

Consensus_repeat	Method
TGCAAGGGTATCGAGCCGTGTCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT859958_7

>merge|NZ_LT859958|7|2114348-2114442|CRISPRCasFinder
TGCAAGGGTATCGAGCCGTGTCTGCCCAACCCAATGTAGGGGCAGACCTTCGCGCAGCACTCCCTGTGCCTTGCAAGGGTATCGAACCGTGTCTG

>NZ_LT859958|7|6|2114348-2114442|CRISPRCasFinder
TGCAAGGGTATCGAGCCGTGTCTG	CCCAACCCAATGTAGGGGCAGACCTTCGCGCAGCACTCCCTGTGCCT
TGCAAGGGTATCGAACCGTGTCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_162287697.1\|2103687_2104371_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|212030
NZ_LT859958.1\|WP_087862740.1\|2112123_2112921_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
NZ_LT859958.1\|WP_087862751.1\|2123791_2124751_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|223560
NZ_LT859958.1\|WP_157891818.1\|2114765_2115608_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862730.1\|2099503_2100781_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_LT859958.1\|WP_087862741.1\|2112920_2114132_+\|DUF711-family-protein	unknown	unknown	gnl\|CDD\|377478
NZ_LT859958.1\|WP_162287682.1\|2120239_2121478_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_LT859958.1\|WP_087862749.1\|2122295_2122964_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_LT859958.1\|WP_087862737.1\|2108329_2109553_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT859958.1\|WP_087862731.1\|2101154_2102129_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862734.1\|2104794_2105790_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT859958.1\|WP_087862745.1\|2118319_2118613_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_LT859958.1\|WP_087862744.1\|2116646_2118290_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_LT859958.1\|WP_087862750.1\|2123016_2123775_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694
NZ_LT859958.1\|WP_087862738.1\|2109778_2111683_-\|potassium-transporter-TrkA	unknown	unknown	gnl\|CDD\|368811
NZ_LT859958.1\|WP_087862736.1\|2107194_2108202_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT859958.1\|WP_087862743.1\|2115519_2116431_-\|SurA-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|234605
NZ_LT859958.1\|WP_087862735.1\|2105847_2107122_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT859958.1\|WP_087862748.1\|2121716_2122190_-\|CopD-family-protein	unknown	unknown	gnl\|CDD\|377510
NZ_LT859958.1\|WP_087862746.1\|2118777_2120193_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_162287697.1\|2103687_2104371_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|212030	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.	2.49841e-06
NZ_LT859958.1\|WP_087862740.1\|2112123_2112921_+\|RNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	7.57368e-63
NZ_LT859958.1\|WP_087862751.1\|2123791_2124751_-\|J-domain-containing-protein	gnl\|CDD\|223560	COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones].	5.56513e-90
NZ_LT859958.1\|WP_087862730.1\|2099503_2100781_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_LT859958.1\|WP_087862741.1\|2112920_2114132_+\|DUF711-family-protein	gnl\|CDD\|377478	pfam05167, DUF711, Uncharacterized ACR (DUF711). The proteins in this family are functionally uncharacterized. The proteins are around 450 amino acids long. It is likely that this family represents a group of glycerol-3-phosphate dehydrogenases.	1.06799e-94
NZ_LT859958.1\|WP_087862749.1\|2122295_2122964_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.53715e-37
NZ_LT859958.1\|WP_087862737.1\|2108329_2109553_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.22332e-31
NZ_LT859958.1\|WP_162287682.1\|2120239_2121478_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.26669e-19
NZ_LT859958.1\|WP_087862734.1\|2104794_2105790_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.44231e-10
NZ_LT859958.1\|WP_087862745.1\|2118319_2118613_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	6.65298e-49
NZ_LT859958.1\|WP_087862744.1\|2116646_2118290_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_LT859958.1\|WP_087862750.1\|2123016_2123775_-\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	5.77229e-88
NZ_LT859958.1\|WP_087862738.1\|2109778_2111683_-\|potassium-transporter-TrkA	gnl\|CDD\|368811	pfam06241, Castor_Poll_mid, Castor and Pollux, part of voltage-gated ion channel. This family represents a short region in the middle of largely plant proteins that belong to the TCDB:1.A.1.23.2 family of the voltage-gated ion channel superfamily, eg UniProtKB:Q5H8A6, Q5H8A5 and Q4VY51.	1.26511e-22
NZ_LT859958.1\|WP_087862736.1\|2107194_2108202_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.23147e-05
NZ_LT859958.1\|WP_087862743.1\|2115519_2116431_-\|SurA-N-terminal-domain-containing-protein	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	2.10469e-13
NZ_LT859958.1\|WP_087862735.1\|2105847_2107122_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.46423e-53
NZ_LT859958.1\|WP_087862748.1\|2121716_2122190_-\|CopD-family-protein	gnl\|CDD\|377510	pfam05425, CopD, Copper resistance protein D. Copper sequestering activity displayed by some bacteria is determined by copper-binding protein products of the copper resistance operon (cop). CopD, together with CopC, perform copper uptake into the cytoplasm.	0.000846103
NZ_LT859958.1\|WP_087862746.1\|2118777_2120193_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.7567e-15

>NZ_LT859958.1|WP_087862741.1|2112920_2114132_+|DUF711-family-protein
MRIRSITCFVHPRWPVSELVFQKAGLFARMARQSFENAGYAVQTVRMATPPFAEFITEQDYAQAGTHIDVIAHSEGFEYVSLGPALTGVPQSYAAIPELLSRSGNLFFGGHLTTPNAEVSLSAVRACAQVIHQAATLEANGFANLRFAALANVPPWAPFFPAAYHQGKSPAFALALEAADLAVSAFTEAQSLQDARQKLVDRIEAHARDLQTIAQRLADAYGVEFKGLDFTLAPFPQPDKSIGVALELLGLPALGLAGSLAASAFLTETLDQAVFKRSGFNGLMLPLLEDATLAARGAQGVLGVNDLLLYSAVCGTGLDTIPLPGETSVEQLSALLLDLAALALRLDKPLTARLMPIPGKAAGDDTNFNFEYFANSKVLALPAEPLTGLLSGDENIAIQHRVD
>NZ_LT859958.1|WP_087862740.1|2112123_2112921_+|RNA-methyltransferase
MKTIIASTSNPKIKRVRALQTQSRKRKQENAFVAEGTRLIEEVIAAQWPLEFILYDQTLSERGKNLIASLPASDLNAVHQVTPGIMAAISDAETPSGILAVLKSRVLPLPTAPTFVILADQVRDPGNMGTLLRTAEAMGAECIITTPGTVDAFAPKVVRSGMGAHFHLPIHSLPWHAIHQYLRGLPVILATTDSDTSLWDVDFSKPCALLIGGEAFGASPLGEEIATRRVAIPMTGRAESLNAAVAAAILMAEVLRQRSTPGKEN
>NZ_LT859958.1|WP_087862738.1|2109778_2111683_-|potassium-transporter-TrkA
MKAKSHYVEKIRYKLDTMFSKGTWMTIFWLGMFSLAFIIFFSLVIVIFQIKAEGESVLPLSEAIWQSLMRTLDAGTMADDAGWGFRLIMLLVTLGGVFFISTFIGLITSGLEQQLDNLQRGRSRVIETGHVVVLGWSEQVFTIIEELVIANENQPEGCIVIMGPGDKVEMENLINERIPDTGNTKIVVRSGDPLDMSSLNILNLDNSKAIIVLSSQGDDTDSEVIKICLAITKRPRKNGKSYHIVAELRDLKNKQVAELIGGNQIEWILSGEIIAKVIAQTCRQPGLSIINTDLLDFSGDEIYFYQDPQLVGKRFGDTLPLFEKNAVMGLWKKGGIPELNPEMNSILEEGDQLFLLAEDDDQIFPDYSIKSLVEEDKIVTVEPQPAEPEKILILGWNWRGPLIVKELDQYVAPQSMVKIVCNLDIGDCLKGFELTGFKNLSISHQVGDTTNRALLDQLASENFDEIIVLCYSECLPVQVADAHTLITLLHLRDIAVKNPKIKYSITTEMLDVRNRNLAEIAKADDFIVSDKLISLMFSQIAEQKALNAVFTDLFNPEGSEIYLKPMGDYVALETPVNFYTLIESAKRKSEIALGYRITREHDNPEKNYGIVLNPKKSESMRFTEEDKLIVVAES
>NZ_LT859958.1|WP_087862737.1|2108329_2109553_+|MFS-transporter
MSLKLNRNAKLFLLSTLLYGFSFSVWELFFNLYILSLGFNNDVLGLIRSATPLAALLLGLPLGLLSDRIGRRTSMLVGLGIDFVGMFMQIRLPNPIPIFLFGMVQGAGFMLYSVSHPPFMMTLSEKENQAMIFGLNVGLHTIATTIGNLAAGQVPALLERWLNITQDTPASYQWVITAGILLAATSLVPVFLIRENKTNANNKQSRPPLNAIIRELTSRPVVRQLTTVNLIQGFGAALLIPYLNVFLRGKFNISDDLLGLIFSISSLFVFLGTMISPWLARITRSRIIPTAVTQSLSLVFLFSLGFSPLQWLAAVSLLFRNVLMQMSTPLLDNFAMLVSQPEEQGAVAGIRGIGWQAGQVFGILISGLIQTRFGFSPLFITTGLLYFITIILTWVHFRPLEKDKSFG
>NZ_LT859958.1|WP_087862736.1|2107194_2108202_+|GNAT-family-N-acetyltransferase
MMKKLEILIASPPKIDGLRFRKFAGESDFPAMLHIIEAGAIADQEKIRDTLDDLKHAYTHLRNCDPYQDMIIAEINGEPIAYSRVEWWQEEDPQVRVYGYFINLLPEWRSQGIETAVIGWSEARLRDIAAEHPREMPKYFQIGSSESKVWLNEIVESLGFVAERYFVEMSRTLEDIPAAELPAGIEVRPVIKGQERKIWDASCEAFRGHWGIVQPEDHHYQEYASSKYFQPDLWQVAWHGDEVVASVLNYIDHDYNQKNHCLRGWTEDISTQRKWRKRGIATALILRSLHMHKALGMTEVALGVDTKGLSGALDLYLNLGYHIDKTYIWYRKPLA
>NZ_LT859958.1|WP_087862735.1|2105847_2107122_+|MFS-transporter
MKTTNTILQKKTKQRILSNTLIVFMVAMVFANVASEMYMTMLPLYMRYLGADVVQIGIFFTVSQIIPLILQVLGGWVSDTIGRLRSVALGSVIGLGAFISPIFVPTWQWLYLTEGLNAMTRSLIGPSFGAFIAEETSEEHRGKVYGMTDTIYSVVTVIGPPLAGWLADTYGFRIMLTVAAAIYICATIIRVFLSKIAVKRHPDISRESFSFKTMRNNFKTIFGLAIAGGVLTWLLLTDGVRDIAFSLSFRLMPVYLEDIAGLNLQQIGWLTSFFGIAMMLTTIPAGWFADRFSERAAIALGFILEFVALIMMINLEAFIGFAAAWIIFGVGVGLLSPAYQSLLSKALPERLLGTGFGLIHASLGIFSLPAPAFGSFLWKAISPQAPFYITAVFALITVIPAWLKFKLSAHDLERAAQANGNHQH
>NZ_LT859958.1|WP_087862734.1|2104794_2105790_+|GNAT-family-N-acetyltransferase
MESKTIKRLRPFTLADAQEVTHLFNICSRATSGNDEFELESMINDWKTPGFDVEKTVRVLENEQGQIIGYIEVWDSSKPHVNKSVYGLLHPDHWDDDQFRTLLSWAETCARERISLAPDGSRVVMMHYTPNNDLQRKKTLEAYGFSLVRHFYRMEIELGSNPQSPVLPEGIKVTTIDINTELKAALLALDDGFKDHWGHVDRPIDDRLVEWQHYLQTDKNFDPTLWFLAKSEGQIAGVIRCNPRTVEDPQMGWVFQLCVRQPWRHQGLGMALLLTAFAEFYRRGNKRVGLIVDAASPTNATRLYEKAGMHIARQTDTYEFELRPGERLDTA
>NZ_LT859958.1|WP_162287697.1|2103687_2104371_+|LysM-peptidoglycan-binding-domain-containing-protein
MGNNMSIQYCVYTTWSDWVHLQTMTGYASGRVGAGVSSANGIVYYTLNVLPNETVVRQPTTASSNNNPAQPADSSPPSLLVSASQVIIATPNPDGSVIHTVRYGETLWAISEAYDIPIDQILTNSGLSLGTTQVLEGQDLVIIPPADPTVTPTITATPTPPTPTPTQPRPTMTPFPTRTPMPTLTPTTPPSALHRALSNGKNLGLGLILTSGLGIIVVVYLGFLKKR
>NZ_LT859958.1|WP_087862731.1|2101154_2102129_+|hypothetical-protein
MPSKTQNKNATKISAVIGFIILTITATVLLVNAVIQSFPIHPAAGIAVILIAIGTYFTIFTEGKTILKADFGSVDFSTKLFEFIAVFVGGILSFYLNNNLGLGLVVGSALVGLLAVVVAPKYAVPAYCGSFAGMSSAALFPKYHGIILASAIAGLIYVICRDIFGGFGGKLGAMSFISAIAAGLLLSGTFATAPIPNWNTSLWILLTAFIAAPLTFYLNTVLGKGPVLASTLIGLLAGLTLPVLVPGIGTQLGVVAICASFTGMSNEKRSPKFWYMLLAGLFTGFLFILSTPLLGGCGGKLGTTAFVSIMAVNGLTGLVNKIRK
>NZ_LT859958.1|WP_087862730.1|2099503_2100781_-|serine--tRNA-ligase
MLDMKLIREEPERVREALEKRHMDPSPVDDILLLDEQRRQLIQDVEEMRAERNLVSKEISKIKDQVQRKEKIEAMRHLGDQIDETGNRLKVVEGKLNTLVSELPNIPDPDVPVGVDDSDNIVIRTVGDLPKFDFEPKPHWDLGPELGIIDFERGVKLAGSRFYVLSGAGARLQRALIFWMVDLHIRQGYLEKYPPLMVRGDILFGSGQLPKFKDNLYKDHEEDLWWIPTAEVPLTGLHMDEILDEEQLPLRYTAYTACFRREKVSAGRDVRGIKRGHQFDKVELYTYCLPENSATELERMVSDAEETVALLGMPYRVLLQSTGDLGFGSHKTYDIEVWAPGCGEWLEISSISIVGDFQARRSGIRYRPSDGKNTRFVHTLNGSGLGLPRTLIAVLENYQQADGSVAIPEVLLPLMGGETVIRRES
>NZ_LT859958.1|WP_157891818.1|2114765_2115608_-|hypothetical-protein
MPELRWHGKPCTIGWQTGERTVLSRSSSTDMSSRQPPHYPQSQAKRREPKAVPSMATPRGAYPPKKPGFLAWLFVFAILGGLIWLFMLIFALGPYADENPPTPHPTSIAILPPSSMITQVPTITATGVAPTVLTPTQTLSYTPTISPSPTPELFPFILIGEPEMMSSDLLRPSLGCDWLVVAGQVWDLQDRAVKGLELNLTGELEGYLIDEYSVTGSAPVYGISGYEFLLENLVVDSQDALYIQLVDADGAPYSLAYPLQTFQDCQRNLILVNFKQVRSE
>NZ_LT859958.1|WP_087862743.1|2115519_2116431_-|SurA-N-terminal-domain-containing-protein
MHAVKWTTTKPIIWLLVFIFFLTACTQPIDTTPEVEPSPPQVFPTITPTIADPTATPQPAAAVVNGERIPLVVFEREVERYLLTQNALGNQNPDLDHARETVLNDLIDQVLLAQGAREAGTEFGEAEVQARLDELAEDVDLEAWMADWGYTRDELFESLRLQMLVADQRQRIVDTIPEAVEQVELRQVLTFTEEGAKRALAKLNSGTPFKDVAFEFKPETGGYLGWVPRGYLLISAVEEAAFNLAVGSYSEIIASDIGYHIVLVIDRDVRPLSVDARITLARQALYDWLADRRANSVIEIIID
>NZ_LT859958.1|WP_087862744.1|2116646_2118290_-|chaperonin-GroEL
MAKQIIFSEEARRSLKAGIDMVAKSVVTTLGPKGRNIAIDRKFGSPTITHDGVTVAKEIELEDPFENMGAQLLKEAATKTNDIAGDGTTTSTVLAHSIVTDGLKNLAAGANPMLLKRGIEAAAKAVAEAIGSQSIAITSPAEIANVASISAQDREIGELIAEVMDKVGNDGVITVEESRGLEFETDYVDGMQFDRGYISPYFVTDPETMEAKIEDPYVLVYDKKISAASDIVPLLEKLVQVGKRELLIIAEDIDGEALATLVINKLRGMINVLAVKAPGFGDRRKAMLQDIAVLTGASVISEETGRKLETVTVNDLGKAEKIFSTKDETTIVGGKGDPNAIKGRVDQIRVEIENTTSDYDREKLQERLAKLAGGVAIIRVGAATETELKEKKHRVEDALSATRAAVEEGIVPGGGVALINAMSAVEDLKMDSDDAQVGVKIVRDALEIPMRKIAENAGKDGSVVVEHARQAQIKEKNPRIGYDVLTEEYCDMVACGVIDPAKVTRGALENAASIAAMILTTEALITDVPEPEPPMPPGGGGMGMGGY
>NZ_LT859958.1|WP_087862745.1|2118319_2118613_-|co-chaperone-GroES
MTISIKPLGNRLVVEPIEEEEITAGGIVLPETAKEKPQKGIVLAVGPGERNDEGEYMPLEVKEGDRVLFAKYSGTEVKYDGKKLLIMRESDILAKIN
>NZ_LT859958.1|WP_087862746.1|2118777_2120193_-|tetratricopeptide-repeat-protein
MYLNGREPHFRIVRKKSNPYRVLIFLVLIAFFLTLLTSIVRGDVQPLFLPTPTPTRTSDSFVKEGMTHFEAGNLEAAITALKRAVMLDPENTAILAELARIQTYSSALSTTDADRSQRLAEALESIDRAKEIDPDNSEVLAIRAFVLDWNANPFLVDPETEEDLLNRAESEALMALQIDSANTLALAYYAEVLVSQMKLNQAYQYIQQAAERDPNLMDVHRIMAFTYETMGEYNLSIQSYKRAIEIMPNYTYLYIAVGRIFRHLKLYDQALEHFARAANLNEQLGIKDPTPYLTIANTYAQEGEFFAAAWNMQKALSFTPANPSVYGQLGVIYHKSRNYEGAIPALQCSIEGCSAEISCEVRQCDPDVDPMVPVEGLPLSGSTIVNYFTYGSVLAGLHRPGDDKCDRALAIFAQIRSRYADDPSVMSIVRAGEEICAYSLGLMDLSETGETPVSATETPPLEQPVDDAAEE
>NZ_LT859958.1|WP_162287682.1|2120239_2121478_-|tetratricopeptide-repeat-protein
MNKRRRRSNPWLILFLLAGIGFFLYLNTNVIPAIPPPFVPTPTPTRDPVSYAEEAESYLAEGRLGMAKASYEAAIKANPQEVPNYLILAKLQLYSGEYEAARVNAENALLLDNKRPNAYALLAWSKGYLGEFLEAEADIRSALDLDPNNAFVHAVYANILARRVANDLGEISTLEKAITHSQRAMEIDPQLLEARWARGYVLEITGNYEEALEQLEVAVEMNDMIAELHMAMGRNYFTIEEYELAVGQFTKAYSLNPTDPEPNWYISRVFSRIGEFAKAVQYAEQAVNDDPSNPRLHGNLGSMYFRNLQYNQAIESLELAVRGGVAAGGVEVEGLPLSYSMTVMEFYSRYGLALARVNRCGEAVQVAQALLQTVPDDPTAVYNAEIIIETCQEFQEHPPTPIPENGESEEVE
>NZ_LT859958.1|WP_087862748.1|2121716_2122190_-|CopD-family-protein
MQKQLVFGMIRSLHDLFTAFWIGGMLTTGFAFLPVVKNAGAEPKLKNKLLKIYQSKLRVVGLISIGVLWITGLLLSKQAGGLSGFLSFTTPYHTLISIKHLVVFTMIVIGGYRGFILGRKIEKFNQQEQKTYMLLLVINIILGVVVIFLSGIGAALG
>NZ_LT859958.1|WP_087862749.1|2122295_2122964_-|Crp/Fnr-family-transcriptional-regulator
MNITPECLSKFPLLEILSENELKRVVPNVRTQTIHKGEILYVQGKTSDKLYFVINGWFKTEKIAADGRQTTLRFIGPGELINELAVFSKVDNAVSVIAMEEGKVFYLFQSYVEQLLETNSKFSRAVVESLAVRIQYLLEQIEDLSFYTVDVRLARFLLLQADGNVWNRQSWITQTEMAARLGTVLDVVNRNLQKFVRDGLIEIQRDKITIVDRNRLEEIAQG
>NZ_LT859958.1|WP_087862750.1|2123016_2123775_-|6-phosphogluconolactonase
MESIQVLSDPLALARAAIDQFVHRAQEAIQARGRFSVALAGGSTPEPVYAGLAQPEIQTKLAWNDIHFFFGDERYVLPDHPDSNFRMVQEALFSKVDVPEMNVHRVRTELNAGLAAFDYETRLKAFFLSPWPRFDLVLLGMGSDGHTASLFPHSFALNETCRWFVAHQLPSQSFWRLTLTKNAINAARQIVVLVSGESKAHMLAEVFSGAYAPEQKPIQMISPQDGDLLWLLDEAAASQLSDKWIRRTSPRN
>NZ_LT859958.1|WP_087862751.1|2123791_2124751_-|J-domain-containing-protein
MQYRDYYKILNVSKNASQEDIKKAYRKLAREYHPDVNPDDPNAEEKFKDINEAYQVLSDPEKREKYDRFGSQWKHYKQTGGRAEDFDWSQWAAQSPRGGTQYRSVTQEEFEQMFGGGLGGFSDFFETLFGGMAGARSTRRPAGQASYQRMQRGQDIEHTVDITLEEAFRGTTRLLTYEGGRRIEASIPPGVKSGSRVRLSGQGGEGTAGSGDLFLKINVKPHAKFKREGDDLRIVLPVDFFVALLGGEVTVNALDKAVKLTIPPETDSGKTFRLTGLGMPKLGKPNQRGDLYAEINVLVPKNLTDAQKEQFKALQKSMK

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Crispr_ID: NZ_LT859958_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT859958_8

2293784-2294019

Orphan

Consensus_repeat	Method
CCTTAGGGGTACAGGTGCCAAAACCGGGATTCGAACATCGTACCCTTTGGGT	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT859958_8

>merge|NZ_LT859958|8|2293784-2294019|PILER-CR
GCCAAAACCGGGATTCGAATTCCCGTGGGGGCATTTTTTTATTCTCTATACAAAGGTGTTGGCCCTCTCAATACCCCTTAGGGGTACAGGTGCCAAAACCGGGATTCGAACATCGTACCCTTTGGGTATTCCCGTGGGGGCATTTTTTTATTCTCTATACAAAGGTGTTGGCCCTCTCAATACCCCTTCGGGGTACAGGTGCCAAAACCGGGATTCGAACATCGTGCCCTTTGGGT

>NZ_LT859958|8|4|2293784-2294019|PILER-CR
GCCAAAACCGGGATTCGAATTCCCGTGGGGGCATTTTTTTATTCTCTATACA	AAGGTGTTGGCCCTCTCAATACCCCTTAGGGGTACAGGTGCCAAAACCGGGATTCG
AACATCGTACCCTTTGGGTATTCCCGTGGGGGCATTTTTTTATTCTCTATAC	AAAGGTGTTGGCCCTCTCAATACCCCTTCGGGGTACAGGTGCCAAAACCGGGATTCG
AACATCGTGCCCTTTGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT859958.1\|WP_087862888.1\|2291158_2292811_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|236050
NZ_LT859958.1\|WP_087862886.1\|2288701_2289955_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_LT859958.1\|WP_087862893.1\|2296407_2297661_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_LT859958.1\|WP_087862887.1\|2290123_2291098_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239487
NZ_LT859958.1\|WP_087863277.1\|2285413_2286532_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|223458
NZ_LT859958.1\|WP_162287685.1\|2295869_2296289_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341393
NZ_LT859958.1\|WP_087862897.1\|2300600_2301773_+\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|366374
NZ_LT859958.1\|WP_087863278.1\|2302383_2303493_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740
NZ_LT859958.1\|WP_087862884.1\|2286576_2287602_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_LT859958.1\|WP_087862894.1\|2297672_2299526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_157891846.1\|2299631_2299844_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_LT859958.1\|WP_087862889.1\|2293146_2293656_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223976
NZ_LT859958.1\|WP_087862880.1\|2281984_2283676_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862898.1\|2301930_2302362_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_LT859958.1\|WP_087862890.1\|2294154_2294787_-\|corrinoid-protein	unknown	unknown	gnl\|CDD\|239021
NZ_LT859958.1\|WP_087862891.1\|2295051_2295693_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862885.1\|2287598_2288705_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_LT859958.1\|WP_087862881.1\|2283675_2284296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT859958.1\|WP_087862896.1\|2300138_2300504_+\|YjbQ-family-protein	unknown	unknown	gnl\|CDD\|376651
NZ_LT859958.1\|WP_087862882.1\|2284292_2285027_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT859958.1\|WP_087862888.1\|2291158_2292811_-\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
NZ_LT859958.1\|WP_087862886.1\|2288701_2289955_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.90572e-33
NZ_LT859958.1\|WP_087862893.1\|2296407_2297661_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	3.70931e-26
NZ_LT859958.1\|WP_087862887.1\|2290123_2291098_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239487	cd03393, PAP2_like_3, PAP2_like_3 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria and archaea, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.19336e-23
NZ_LT859958.1\|WP_087863277.1\|2285413_2286532_+\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|223458	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane].	5.90086e-161
NZ_LT859958.1\|WP_162287685.1\|2295869_2296289_+\|CBS-domain-containing-protein	gnl\|CDD\|341393	cd04630, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.08277e-27
NZ_LT859958.1\|WP_087862897.1\|2300600_2301773_+\|PD40-domain-containing-protein	gnl\|CDD\|366374	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region. This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.	3.20462e-06
NZ_LT859958.1\|WP_087863278.1\|2302383_2303493_-\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	1.96693e-156
NZ_LT859958.1\|WP_087862884.1\|2286576_2287602_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.7216e-29
NZ_LT859958.1\|WP_157891846.1\|2299631_2299844_-\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	8.33491e-08
NZ_LT859958.1\|WP_087862889.1\|2293146_2293656_+\|peptidylprolyl-isomerase	gnl\|CDD\|223976	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones].	3.02839e-39
NZ_LT859958.1\|WP_087862890.1\|2294154_2294787_-\|corrinoid-protein	gnl\|CDD\|239021	cd02070, corrinoid_protein_B12-BD, B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.	2.08238e-85
NZ_LT859958.1\|WP_087862885.1\|2287598_2288705_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.13139e-38
NZ_LT859958.1\|WP_087862896.1\|2300138_2300504_+\|YjbQ-family-protein	gnl\|CDD\|376651	pfam01894, UPF0047, Uncharacterized protein family UPF0047. This family has no known function. The alignment contains a conserved aspartate and histidine that may be functionally important.	3.69339e-42
NZ_LT859958.1\|WP_087862898.1\|2301930_2302362_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	8.61131e-13

>NZ_LT859958.1|WP_087862889.1|2293146_2293656_+|peptidylprolyl-isomerase
MAEKQITSVEKNVVVTMDYRLEVDGKEIDSGPIQFLQGHGNIIPGLEAEVEGMQLGEEKEVLVKAEDAYGKYDPELEIEVPLSSFPEDFEIKLGHPMRMQDDKGHVFTAVAMGISDEIVMLNLNHPLAGKDLLFKTRVSALRPATELEIAQGCLASACSGCTSSNCGNC
>NZ_LT859958.1|WP_087862888.1|2291158_2292811_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MKISPLAGKPATRELLVDIPRLISAYYTERPDPHIFDQQVAFGTSGHRGTSLTRSFNEDHILAISQAIVEYRMKQGTTGPLYIGKDTHALSEPAMRSALEVFAANGVQIMLQEGFGYTPTPAISRSILVYNLGRTRGLADGVVITPSHNPPGDGGFKYNPPDGGPAGAEITRAIEDRANQILREGLKAVKRIPYSKAIKASTTHPVDFIQPYVEDLANVVNMEAISTAGVRIGVDPLGGAGVAYWGPIAEIYGLDLDIVNPDVDPTFRFMTVDHDGKIRMDCSSPYAMAGLIEMKDSYDIAFGNDSDFDRHGVVTPVGGLMNPNHYLAVAVWYLFQNRPAWAAKVKVGKTVVTSAMIDRVAKFLNRDLVEVPVGFKWFVPGLLTGDLGFGGEESAGASFLRRDGTTWTTDKDGIILNLLAAEILAVTGEDPAHIYQQLQERFGQAFYQRLEGKATAEQKAVFRKLSPEMITAEELAGEKIIAKLTRAPGNDADIGGLKIVTENGWTAVRPSGTEDIYKVYAESLLSQEHLNRILEEGQAIVQDLFDSQSG
>NZ_LT859958.1|WP_087862887.1|2290123_2291098_-|phosphatase-PAP2-family-protein
MAAVNLWQIVVNEFFQGLGAWLLAPMKVITFFGEELFYILLLPVLYWSFDQLLGLRVGMMLLLSNGFNAFFKFLFRLPRPCWISDTVTCHVHETSFGLPSGHAQNAISVWGWLAVEVKKRWFSIAMVALIFLIGISRLVLGVHFLGDVLFGWLIGGLLLAGFAAWSKKIGRWFEARSFGARLGLVIASTVVLMLLILVVNWALGPRWVMDPEWAGRAGQVAPFGLDGTFTLGGTWTGLLVGFVILSEKKGRFLANEGGWRRLVRFLIGLLGVVILYFGLGQVLPRGAHFLGYSMRFIRYTLVGLWVSWLAPLVFEKVGVLKFKE
>NZ_LT859958.1|WP_087862886.1|2288701_2289955_+|glycosyltransferase-family-4-protein
MSTHILLIADGRSPTAQSWITNIQALGYSVSLVSTFPCNPPEGIRHFSILPIAFSQLSSSAQAGLAAPDGQPKSTPARRLIRHFAPVLQPLRYLLGPLTVARFARPYQALVSRIKPDLVHALRIPFEGMLGSYTPKGIPFIAATWGNDLTLHASASPLMRTFTQRCLVCADGFAADTQRDVRLARNWGLPADVPTLVVPGSGGLDLNAIFAAPSLDPDAFGLPASGVFVVNPRGMRPKSVHQDVFFAAIPAVLARYPEVHFICPNLAGIRQAETWVSQYGIQSNTHLLPKLSQPQLWSLLKTARVFVSPSSHDGTPNSLLEAMSCGCFPIAGDIESLREWIENGINGLLVDPRSPTQLAEALCQALEDQTLRQKATEHNLALVRQRASQEATHPQISNFYEKLLGDDPTSRRAPRAL
>NZ_LT859958.1|WP_087862885.1|2287598_2288705_+|glycosyltransferase-family-4-protein
MSTFAGKVGVVQRVLAEYRAPFFNALGQACPGGLEVFAGEPRDDEMIKTATSLDSAHLIHGKNLHLLKSNFYLCLQFGLLRWLKQFNPDILIVEANPRYLRTPAALRWMRKRARPVIGWGLGAPPISGLLTGLRRRRRTHFISQFDALITYSQTGADEYARLGFPPERILIAINAVAPAPTHPLPVRPVPAKDQPERVLFVGRLQARKQVDQLLRACAQLPELLQPDLVIVGDGPDRERLENLAEEVYPRAVFTGALYGAELAEQFREADLFVLPGTGGLALQQAMSYGLPLIAAEADGTQADLVRPENGWQIPPDDLPALGAALSTALRDIPMLRKMGAESYRIVSEEINLEKMVAVFIEALKRSLP
>NZ_LT859958.1|WP_087862884.1|2286576_2287602_+|glycosyltransferase-family-4-protein
MKTQICLVPELTGLGGTASFQARMIAGLKSRGIPHTFNIASPENTAVLVIGGSRQLLKLWQAKRRGVRIIQRLNGMNWIHRLEKTAPRLFLRSEVNNQVLAFIRRHLADGIVYQSHFCHTWWNRVYGSRPIPHQVTYNGVDLQEFSPNGPETPPEDHFRILLVEGRLVGAYARGLETAVKLASAVKTNCGRPLELMVAGDVNDEMKARAYSLAPDLWITWRGVLPREDIAAVDRSAHVLFSADLNAACPNSVIEALACGTPVLAYDTGALAELIQDGAGRVVPYGADHWRLEDPLIPPLTEACVEILQNNPAYRARARARAEAVFSLEAMLAGYLNALGVS
>NZ_LT859958.1|WP_087863277.1|2285413_2286532_+|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MTIFGTRPEAVKMAPVIKALREHPDHIDITVCVTAQHREMLDQVLQAFDIIPDIDLDLMDHDQTLPELTARIFTHLDPVLLQIRPDWLLVQGDTTTVMAAAILGYYRQIRVGHIEAGLRTHDKWQPFPEEMNRRIAGVVADLHFAPTENNRQNLLREGIPDEIIKITGNPVIDALKIISQQPAPPQVDQLLDQTGVSAGKRRLVLVTAHRRENFGQPILDICLALKRLAQAYQDEIVIVYPVHLNPNIHVPVHQALSGIDNIHLLPPLDYLPLVHLMKHATLILTDSGGIQEEAPSFGVPTLVLRQRTERQEGVQAGTLKLVGTDPDTIFMEALKLLDDRAAHAAMSGAVNPYGDGHAAERIVAALLASQTG
>NZ_LT859958.1|WP_087862882.1|2284292_2285027_-|hypothetical-protein
MTWTEIGWVIIGLAVVLLLFFSLLFSRRGRYAVRVNPAVNAFVKQRVRSLEGGKQSQVALGDRFWSRSYPALGLHALSVSASLAETDLGAQETQVFAAGTGELALFARQILCGTYQGGYSSALNLILTGPTPYAFLAGFLGEMGLHSPGSVGLFGHYGPMGALILEAAQIKGGHPFAAAGSISAQAALFLTTRDLLIGEEIFLLPGLMDRSPSLQAAWISEDILRVLLITLLVVAAGLTLAGVL
>NZ_LT859958.1|WP_087862881.1|2283675_2284296_-|hypothetical-protein
MKRIIAILVASLTGLTVLAGYFFQAQLANLTGLLIEWGILLIGLAGVIGIGYLLKMHLVRVAHWQKGSLLSLIVLVAFLVTVGIGFFLPSESAFFRNWVLNIQIPVETSLLAILTVTMLFASLRIIRTRGWTLMSASFLISALISLILNLHYLNPANGTAGAEWLEFVRRLPLAGLRGILIGIALGGLIVGLRVLLGMDRPYEDGP
>NZ_LT859958.1|WP_087862880.1|2281984_2283676_-|hypothetical-protein
MLVLICSECGAENPLGTEKCLLCEASLEGVVPVDLPRDDQPDLAGDEEHLTDLLHSLKQDEDQDQLFDGADGEFPPSPDHDEILEDAEQPDDEPQVPEWLYRIRQRAQTEPDSIGEITQKINAARASLETAQKEDQELQLRSVLQKIQGEVEKKPPDQVPDEIEDSEEVGTSGSMHENWLRRIRKKHRPAEAEDAKEILSEREGDSLLHWLVALENGEQTMEELVEEAPVDEAGRAEDTKETAISKGSEQATREIILDDIKGTQLEAMALSISREEQARADQLAATMRSDKEKRPAHTSDRPALNRGLRLGIGFLLITILSLVLFMGRPGERVSGVAAPHMRDMVEWVGGLQENSKVLLVMDYSAAFSGEMTLIATPILRGIFEAGAEVSTLSSAPAGRLLFDLLVEEATLVDQRVVTDLGYYPVGSFGAYGLARQTLPGENEPEFALTLPVKPFDAILILGDDYEGVMAWIEQIKSLKPDVPILLILSAQAGPLLQPYWESGQVAGMISGIADAVNLEGQNSVSSIHWFAYRVGIVLMILMLVIGMSFPSSRGSLGDEGGER
>NZ_LT859958.1|WP_087862890.1|2294154_2294787_-|corrinoid-protein
MDGELKELYTAILEGQRDEAKEYVEAALRAGVPAGEVLDVMVNAMGEVGELFEEGEYFVPEMLIAARAMKTGMEILKPELVGADIQPIGKIVAGTVKGDLHDIGKNLVCMMLEGAGFQVVDLGTDVSPEAFIAAVQEHQPDFVAMSALLTTTMPNMETTITALNAAGLRGAVRVLIGGAPVTQSYADKIGADGYAPDASRAVKLAKTLLG
>NZ_LT859958.1|WP_087862891.1|2295051_2295693_-|hypothetical-protein
MKKLNRRFLISLTGGILLLVVGVLLLLSNLGIVTLELESVIGPLLAGGGLIFLLVFITNTDAWWALIPGFTLIGVGINAFVSPWLGENEGSVTSAIFLGSVGLPFLLIYISNHRHWWALLPGGVLLSIAVTQLIPDSSALKDGIFFLGLAITFGLLYLLPTPSGKLKWALYPAGILLLIGIFITLGATNLLAFVGPLVLLAFGVYVIVRALRK
>NZ_LT859958.1|WP_162287685.1|2295869_2296289_+|CBS-domain-containing-protein
MQDLVKDWMIDLVIYIDQERNVLDALSIMRRRYVNSLIVKINEEEKQYGIITSIDICDKIVARGKSPATTKVQEIMTTPLISVSPDQTIYECARTMSDSHIHQLPVIAEDGTIIGIISASDFLVVAEALGHGDGDRLLR
>NZ_LT859958.1|WP_087862893.1|2296407_2297661_+|LCP-family-protein
MLKHRNFLLAVLILSGMIVFGLALQGCQIEDGAPAFDDNLNWLTVIETPPTIFETNFDQIQDQTEREPTAQEFDQDDQSFWPSFPPPAIQPATPIPPPLERLEIDDHILVWVLLGTDTEPPFSGKTQAIHLVFINPRFSKASLISIPGDLYVYIPGFTMQRLSTAYAIGGIETLRTTLAYNFGVLPSRFVLAHPGDFQWLVDDINGIEVTVFQPIPHACGGIPAGVIPMDGTLALCYASYRDGMDEISRMQRQQQLLQLIFHNLTHNGNLAKLPTLFASYQGWIKTDFSLPELMGFIPLALRLADPDRIGYFLIGWDQISLWEVPGYSQAMVFLPDQEAIKYVLETALSTILIPSPLTNQFQTLEAQLIAAQQATAISFQQSTPIPPDAPTPSEPLELTPPWETPGVSATPTTLGYP
>NZ_LT859958.1|WP_087862894.1|2297672_2299526_+|hypothetical-protein
MLKNHLKHTRKIVFSIVLIACVVVGLISARYLQVDAYSLGSKSPDRQAVITVSYTTYEWWLLTWNNSKLICTMYIEHEGWPHPDEVKYFCGDQISKDWQETNPCIFSEDIESAAQCPGLYLHLVSVTPGEREIEVTLLPPEVFIDIADCDPQPPENRCETQPRLHLIAVEPLPNEQIISIQGTIGNDYFSCQGSECTVPLPATGINGVRVTFWADSSFGDSTELFTAQIRVIPWGDFAAPDVNTVDTPYWYVDILSSQYLRDIGSSCSQIWSAFPPVGGPPLWLSSPDHPDALISSEPYYYLAGSLIREGLAGASECPGGGLQPSGVANQCGLDATRELMNDWQNQFNAEIVRVSKETGIPGQLMKNIFSRESQFWPGFAASHYEAGLGHLSDMGADTVLLWNPEFFRQFCPLVLDTTVCQQGFGNLDIGEQEMLRGALVNKVNAACPECPMGIDLQQANFSISIFARSLLANCEQVGQIIYNTTRRLAGEVSSYEDLWRFTLINYNGGPGCLSNAIEQTYKSGHPLTWDAVIQHIEPGICRISIDYVNDIAYMPGIPTTTPTPSVSPNIFRPTTTPTPLPQEVVPPFIIQLTPTPTSPYGGGYPPAPTNAYPHSYP
>NZ_LT859958.1|WP_157891846.1|2299631_2299844_-|YtxH-domain-containing-protein
MRKFGNFIFGALIGGVVGSTLALLFAPTSGDSARKEIVAYFNHIKDEVNRAADEKRAEMLEQLEALRSGK
>NZ_LT859958.1|WP_087862896.1|2300138_2300504_+|YjbQ-family-protein
MTREINTNIQNWGVVEGMTYLFIPHTSASLVINESYDATARRDLEAYLDHIAPEGESWYVHTLKGRDDSPAHLRTMITATSLTIPVDAGRLSLGPWQGVYLAEHRRRAHRPEVLLRVLSVE
>NZ_LT859958.1|WP_087862897.1|2300600_2301773_+|PD40-domain-containing-protein
MKKSIQPKMILTLIGLLSITLSACLTTTKYSPQESEPVPEMTTQNLPPEKFELPAPLFYLQNGQIWRLDPDAQSTQQLTNENAPIESFDLSVNGMLAYISNNSLITSDSQGNNRQVLRAGPALPPISDELARLNDFEYITTALRTPCWSPDGQKIAFIENGLQIFNLKTGQADMVWRQSTTSSNPTLFEGVLSWSPDGRFILLDQYTYPIENKYYRWISLLQLGESLHLNISPQSGGSFAWSSDAGDLFLANQAFGSEQSLMRCKPETAQCQMIAEFEPARWYYHYAFPFVSPDGRLLVLMGASNDPVQQPQGLKLISVRQDGYGRNELRRDRYRVESGLWAPAGNGVLIRLAQGTDDFPAGSTLWLSVEDVPAVPLPLPNATNLRWGVD
>NZ_LT859958.1|WP_087862898.1|2301930_2302362_-|GtrA-family-protein
MAEVGKLIKNVWQKHKQVLLWALGGGVNTLLTYGLYLAFNLIMVYPIAYSASYVIGIVLSFFYNSLVVFHSPLSFKKFALFPMVYLVQYLLSLGLLTVFVQFFMVSETLAPIFVLAISLPVTYLLSKLILKGKDRAAEDELQQ
>NZ_LT859958.1|WP_087863278.1|2302383_2303493_-|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MRIPYLDLKAVNAEVQAKLDQAYARVLDSGWFILGREVRAFEEAFAAYVGVKHCVGVGNGLEALHLILRAYGIGAGDEVIVPSNTYIATWLAVTYAGARPIPVEPDPRTYNLDPARIEMALTERTRALLPVHLYGQPAAVEPIMAIADRHDLVVIEDAAQAHGARYQGHMCGSLGHAAGFSFYPGKNLGALGDAGAVTTNDDVLAEAVRSLRNYGSQKKYENERLGFNSRLDELQAAFLSVKLPYLEQWNRHRQAIADRYTEIFSKEPGLIVPYVAERSSHVWHIYPLRCTRRDALQAYLAREGIETLIHYPHPPHRSEAYAFSGYPEGAFPLAEEIAETELSLPISPVMSLNDAEVVAQAVIGFLKTG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1411761 : 1421367

Prochlorococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_087862189.1\|1411761_1413180_-	peptidoglycan DD-metalloendopeptidase family protein	Q8SBN9	Clostridium_phage	3.4e-12	41.1
WP_087862190.1\|1413438_1414203_+	exodeoxyribonuclease III	E3T4M6	Cafeteria_roenbergensis_virus	6.1e-48	41.7
WP_087862191.1\|1414258_1415722_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPB	E3ST28	Prochlorococcus_phage	5.0e-75	36.3
WP_087862192.1\|1415714_1417070_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3SN07	Prochlorococcus_phage	1.6e-51	37.1
WP_087862193.1\|1417069_1417462_-	glycine cleavage system protein GcvH	NA	NA	NA	NA
WP_087862194.1\|1417762_1419595_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	7.3e-07	28.2
WP_087862195.1\|1419597_1421367_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-42	29.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT859958

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection