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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT906471 Bordetella pertussis strain NCTC13666 chromosome 1 5 crisprs DEDDh,csa3,cas3,DinG 0 0 25 0

Results visualization

1. NZ_LT906471
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906471_1 583377-583461 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906471_2 956787-956896 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906471_3 2172742-2172869 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906471_4 3242496-3242612 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906471_5 3959365-3959458 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 254958 : 308390 46 Planktothrix_phage(40.0%) transposase NA
DBSCAN-SWA_2 360069 : 402823 41 Synechococcus_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_3 410421 : 468895 54 Planktothrix_phage(22.22%) transposase,tRNA NA
DBSCAN-SWA_4 497679 : 558190 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_5 566122 : 619712 46 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_6 888097 : 947397 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_7 953552 : 1007293 48 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_8 1056231 : 1096181 31 Pseudomonas_phage(33.33%) protease,transposase,integrase,tRNA attL 1053479:1053497|attR 1073367:1073385
DBSCAN-SWA_9 1106108 : 1154775 48 Bovine_alphaherpesvirus(10.0%) protease,transposase,holin,tRNA NA
DBSCAN-SWA_10 1338992 : 1433029 87 Bacillus_virus(30.0%) transposase NA
DBSCAN-SWA_11 1463415 : 1534385 53 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_12 1581779 : 1662654 59 Bacillus_virus(25.0%) transposase,tRNA NA
DBSCAN-SWA_13 2076000 : 2133279 49 Klosneuvirus(15.38%) transposase,tRNA NA
DBSCAN-SWA_14 2184528 : 2243798 51 Klosneuvirus(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_15 2254038 : 2311535 57 Staphylococcus_phage(16.67%) transposase NA
DBSCAN-SWA_16 2327091 : 2391460 51 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_17 2577928 : 2631507 45 Yellowstone_lake_phycodnavirus(14.29%) transposase,tRNA NA
DBSCAN-SWA_18 2661116 : 2732270 55 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_19 2829146 : 2887927 50 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_20 2941513 : 3008013 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_21 3191465 : 3343113 119 uncultured_Mediterranean_phage(15.79%) transposase,holin,tRNA NA
DBSCAN-SWA_22 3364064 : 3436558 58 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_23 3450065 : 3504632 45 Bacillus_phage(33.33%) transposase,holin NA
DBSCAN-SWA_24 3569090 : 3642252 57 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_25 3653539 : 3753652 108 uncultured_Caudovirales_phage(14.29%) protease,tRNA,transposase,tail,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage