CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906480	Stenotrophomonas maltophilia strain NCTC10257 chromosome 1	15 crisprs	csa3,DEDDh,WYL,cas3,Cas9_archaeal,DinG,PD-DExK	1	3	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906480_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_1

24848-24949

Orphan

Consensus_repeat	Method
GTTGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_1

>merge|NZ_LT906480|1|24848-24949|CRISPRCasFinder
GTTGCCGGCCAGCGGCCGGCACTACCCCGTAAATCGGGGGCCCTGGCCGGCATCGCGCCGTGCAGGGCGTCAGGGGGTTGCCGGCCAGCGGCCGGCACTACC

>NZ_LT906480|1|1|24848-24949|CRISPRCasFinder
GTTGCCGGCCAGCGGCCGGCACTACC	CCGTAAATCGGGGGCCCTGGCCGGCATCGCGCCGTGCAGGGCGTCAGGGG
GTTGCCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_012478664.1\|33477_33765_+\|ogr/Delta-like-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|368019
NZ_LT906480.1\|WP_024958797.1\|19968_20985_-\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458
NZ_LT906480.1\|WP_024958796.1\|19149_19860_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_LT906480.1\|WP_005411774.1\|26000_26921_+\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
NZ_LT906480.1\|WP_012478661.1\|31208_32399_+\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_LT906480.1\|WP_024958105.1\|22701_24795_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_LT906480.1\|WP_012478662.1\|32995_33268_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|283558
NZ_LT906480.1\|WP_024957481.1\|34061_34271_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005411772.1\|24951_25290_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024958104.1\|21327_22530_-\|aspartate/tyrosine/aromatic-aminotransferase	unknown	unknown	gnl\|CDD\|181731
NZ_LT906480.1\|WP_024958795.1\|18329_18620_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_012478657.1\|25437_25836_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957484.1\|26924_29411_+\|DNA-ligase-D	unknown	unknown	gnl\|CDD\|235658
NZ_LT906480.1\|WP_032964872.1\|18631_19087_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024958794.1\|17096_18188_+\|PA0069-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
NZ_LT906480.1\|WP_005411776.1\|29482_29875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_012478663.1\|33264_33468_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024958793.1\|16251_16995_+\|pyridoxine-5'-phosphate-synthase	unknown	unknown	gnl\|CDD\|235380
NZ_LT906480.1\|WP_005411742.1\|15972_16242_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024958792.1\|14471_15932_+\|cardiolipin-synthase	unknown	unknown	gnl\|CDD\|234967

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_012478664.1\|33477_33765_+\|ogr/Delta-like-zinc-finger-family-protein	gnl\|CDD\|368019	pfam04606, Ogr_Delta, Ogr/Delta-like zinc finger. This is a viral family of phage zinc-binding transcriptional activators, which also contains cryptic members in some bacterial genomes. The P4 phage delta protein contains two such domains attached covalently, while the P2 phage Ogr proteins possess one domain but function as dimers. All the members of this family have the following consensus sequence: C-X(2)-C-X(3)-A-(X)2-R-X(15)-C-X(4)-C-X(3)-F. This family also includes zinc fingers in recombinase proteins.	3.99647e-10
NZ_LT906480.1\|WP_024958797.1\|19968_20985_-\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	0
NZ_LT906480.1\|WP_024958796.1\|19149_19860_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	1.98924e-09
NZ_LT906480.1\|WP_005411774.1\|26000_26921_+\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	1.90568e-116
NZ_LT906480.1\|WP_012478661.1\|31208_32399_+\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	9.15321e-82
NZ_LT906480.1\|WP_024958105.1\|22701_24795_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.3817e-48
NZ_LT906480.1\|WP_024958793.1\|16251_16995_+\|pyridoxine-5'-phosphate-synthase	gnl\|CDD\|235380	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional.	1.2008e-113
NZ_LT906480.1\|WP_024958104.1\|21327_22530_-\|aspartate/tyrosine/aromatic-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
NZ_LT906480.1\|WP_024957484.1\|26924_29411_+\|DNA-ligase-D	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0
NZ_LT906480.1\|WP_024958792.1\|14471_15932_+\|cardiolipin-synthase	gnl\|CDD\|234967	PRK01642, cls, cardiolipin synthetase; Reviewed.	6.88144e-139
NZ_LT906480.1\|WP_024958794.1\|17096_18188_+\|PA0069-family-radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	6.63241e-26
NZ_LT906480.1\|WP_012478662.1\|32995_33268_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|283558	pfam05930, Phage_AlpA, Prophage CP4-57 regulatory protein (AlpA). This family consists of several short bacterial and phage proteins which are related to the E. coli protein AlpA. AlpA suppress two phenotypes of a delta lon protease mutant, overproduction of capsular polysaccharide and sensitivity to UV light. Several of the sequences in this family are thought to be DNA-binding proteins.	1.51634e-19

>NZ_LT906480.1|WP_024958105.1|22701_24795_+|TonB-dependent-receptor
MNPAARRRCLPLSALLLSPWAAVAEPEPTALPAVQVQAARVPGIDPFALPASQDTVWIDASRAGTGAQLSEALAGVPGLLARDRQNFAQDTQLSIRGFGARSTFGVRGVRVLIDGVPATMPDGQGQLSHASLLGAERIEVLRGPFSALYGNSSGGVLQVWSAQGQAGDPWRLRVNAGADNTLSVGAQLKGAGQVLDYSIAANHFRADGWRDHSRARRESLNARIGGELGGGRLELLLNALDAPDAQDPLGLTRAQVAADPRQATAVAHQYNTRKTVRQQQAGLRWTRETGAQRWQLMGYAGQRAVRQYLPIPPAPQTNSPLHAGGVIDLQGGYGGLDARWGWHGDLAGRPLDLVAGLSADRQRQHRTGFENFIGSALGVRGRLRRDQIDVVQNVDQFAQAWWQWSPRWSLLAGLRHSAVRFESNDRYIVGANPDDSGHRRYQAITPVAGVSFEASPQWRLHAAVGRGFETPTFNELGYRADGQAGLALDLAAARSRSIEVGSKWHAQDGNQLDISLFRADTDGELAVASNIGGRSTYRNIGRTRRQGLELQYRQPLAEHLELQLAWTWLQAQVRSPYLTSNTLVAAGSRLPGVPRQQAFARLQWSPADWQWALEAMASSDTVVNDVATERAPGYALLHLEAGRRWTLPGGELRAFARLENVLDQAYIGSVIVNDGNGRFYEPGPGRRANVGLQWSWR
>NZ_LT906480.1|WP_024958104.1|21327_22530_-|aspartate/tyrosine/aromatic-aminotransferase
MSFFANVELVPGDPILGLTEAYNADSRPTKVNLGVGIYYDESGRIPLLRAVKQIEQQLAAEAKPRGYLPIDGLPAYTQATRELVFGKDSPLLAAGRVTTAQTVGGSGALRVGADVLKKLLPHATVALSNPSWENHRAVFSAAGFDVLDYTYFDPATHGVDFNGMLADLGKLDAGTVVLLHACCHNPTGADLTVTQWKQVAQLLKDKQLFPFIDMAYQGFDKGIEQDGAAVRIIAEAGIDSFIVANSYSKSFSLYGERVGALSMVAPTAADAKAVQSQVKRVIRTIYSSPSTHGAALVAGVLTNPELRAMWEQELTEMRERIHALRQGLVEKLAAAGAPQFGFINEQAGMFSYSGLSREQVERLRNEFGIYAVGTGRICVAALNQNNLEYVAKAVATVAKG
>NZ_LT906480.1|WP_024958797.1|19968_20985_-|class-1-fructose-bisphosphatase
MSRTSLTRFLIQEQHAGRINADLRQLIAVVARACTSISIAVSKGALGGVLGDAGTGNVQGEAQKKLDVISNEILLEANAWGGHLAACASEEMDHSQPVPDIYPRGDFLLLFDPLDGSSNIDVNVSVGTIFSVLRCPTNVELPGDDAFLQPGSKQIAAGYCIYGPSTQLVLTVGHGTHAFTLDREKGEFVLTTENMQIPPATQEFAINMSNQRHWEAPMQAYVGDLLAGKEGTRGKNFNMRWIASMVADVHRILTRGGIFIYPWDKKDPSKAGKLRLMYEANPMGLLVEQAGGAAWTGRERILDIQPDQLHQRVPVFLGSREEVAEAVRYHHAHDNAQG
>NZ_LT906480.1|WP_024958796.1|19149_19860_-|2OG-Fe(II)-oxygenase
MHEQGPVDFIEVIHNAVPSEVCAAIVERMRAARGLQPGAVGSGVFPELKHSKDLRISGLDGWQDVDHQLQHAVFNGLLTYLRRYPQALIAPLMLQIQDSKGQPRRLSAEDFPDMPQQQLADLARTCLRPGAINLQWYAAGEGGYPYWHCELYPKDAQAETLHRHVLWTLYLNEEFEEGETEFLFQGRKIAPRTGSLLIAPTAFTHTHRGNRPQGGDKFIATSWILFQSAQKLFGGR
>NZ_LT906480.1|WP_032964872.1|18631_19087_+|hypothetical-protein
MRHLLLCTVIAALIGGTCLSMFGSIGGGDWTGEPTEAELRAATDTFELPSGGHPTNVKFLPKVTFLGAVFDAELESDPEQIAAFFIKQAAEKRWRLQKDKRQRHYRLMVFCEDRLARSVELTTRGSTVKLYGGTYWDSDRGGDYYCSPEAR
>NZ_LT906480.1|WP_024958795.1|18329_18620_+|hypothetical-protein
MKFIYWLGIAFLWMFPLNFLLLTAAKLLSADPLGSEELVGLGTAVFGGAAGGILYRRRPRKRPAPSSINDPVLGAKTTEALRDSSSDEQRQSGNGP
>NZ_LT906480.1|WP_024958794.1|17096_18188_+|PA0069-family-radical-SAM-protein
MGIAIKGRGSTSHLAGRFESTVSEAVDDGWAVDESEEFLAPRLRTEVRAETARSIISRNTSPDVGFSQSVNPYRGCEHGCSYCFARPSHAYLNLSPGLDFETKLFAKTNAPQLLRKELSKPGYVPQPIALGINTDAYQPIERKFKLTRQLIEVMLETKHPFSLITKNALVERDIDLLAPLAAENLVSVHFSVTSLDPHLSAKLEPRASAPHARLRAMKRLHEAGIPVGVMVAPVIPWINDSELEAVLEAAHDAGASTAGYVLLRLPLEVAPLFRDWLDTHHPDRAAHVMSTIQQLRGGKDYDSQFGTRMRGQGVYADLLNNRFKLARKRLGFNAQNSHWPKLDCSRFQKPLPPKKDSPQGSLF
>NZ_LT906480.1|WP_024958793.1|16251_16995_+|pyridoxine-5'-phosphate-synthase
MTQLSVNVNKIAVLRNSRGGAEPDVVRAAQACLDAGAHGITVHPRPDRRHITAEDVLALSTLTRARGVEFNIEGNPFAPPREGYPGLLPLCAQTRPAQATLVPDGDGQITSDHGFDFERDAERLRPLVAELKAMGCRVSLFVDAGNPLLEQAAEVGADRVELYTGPYAEAHAAGDAAAMLELFATAARRAQAVGLGVNAGHDLSQDNLRDFLAHVPDVLEVSIGHALISEALYDGLDATVRGYLALL
>NZ_LT906480.1|WP_005411742.1|15972_16242_+|hypothetical-protein
MYWLYLLLALGCFAFALKTPSAALMTLCLLAALAFLLAWVRGRYVARFGDLQRDPATLVDAEELRRLREQAQARRNVDANDHDPSPLSK
>NZ_LT906480.1|WP_024958792.1|14471_15932_+|cardiolipin-synthase
MLALFDSLRHWLDGIAHLGSILAVAYLLYLFALAGWIMLQKREPVATLSWILSLALLPYLGLFIYYLLGPQKVKRQRLRRGRARSGMEHYSDVCPPDADCTELAKIAQATTGLAPSSATEVTWLVDGAATYAALLEAVAQARDHVHLEYYIFNPDHAGTALRDALVERARAGVQVRLLLDAVGSSALPRRFLQPLIDAGGEAVWFHPRQLLKPFKRPWLNLRTHRKLVIVDGRLAFTGGINITDDEDESRKPNAYRDLHMRICGHVVRSLQLVFAEDWLYASGQDPSRMDIARLWPADMPLRGDGAINAQVLVSGPDSGWETIHRLHVAAIQEAHERVWLVTPYFVPGEAARMALTSAALGGLDVRLLVPKMSDSWFVTQAARSYFDELLHAGAKIYEYGPRMLHTKAFIADDDVCIVGSANFDHRSFRLNFELSMMISDRDRVAALAGLLKGEFDRATRVHDQAGRSLWLHRLPEAFARLASPLL
>NZ_LT906480.1|WP_005411772.1|24951_25290_-|hypothetical-protein
MSRETSRDPLRENHPPIPGEQRGKRDADNADYRGTGAPFFDAEHDHLPVKHEAEQAAQDRKDGGDRHRGGQESPLKRRERKQRASDNQDEALEETFPASDPTSPFVPAKAPD
>NZ_LT906480.1|WP_012478657.1|25437_25836_+|hypothetical-protein
MPRLERPAPSVFNALLDPLGQRSAQRRTRRHEDPQAVAQDYLQYMLSDYEERRGQSHRNWRDLCPVYAFALTTHAADWPRGDAADTCEELAEHWEQMRGQSRLGWSQARPVVEDAWRALDHIPAAAVRPLLQ
>NZ_LT906480.1|WP_005411774.1|26000_26921_+|Ku-protein
MARPIWTGTLSFGLLNVPVSLMSGERKVDLQFRMLDSRDRKPIRFERVNADTGEEVPWKDIVKAYEYDKGSYVVLEEGDIRSAAPESHEAVEVESFVDAAQIDPRYYEKPYLLVPGKKAEKGYVLLRETLRSTGKVGIARVVVRTREYLCAVMPHEDALVLMILRYPQELVDPEDYKLPTGKLSDYRITSKETAMAEQLIESMAGDWDPSQYHDEFRERLQQVLNKRIKSKGGTTRVDDEPAPREDASTNVVDFMALLQKSLDANKRTPAKKAATRKAAAKSPVKKAAKKTTKKAAKKTAPRRKAG
>NZ_LT906480.1|WP_024957484.1|26924_29411_+|DNA-ligase-D
MSLHQYRRKRRLGGGAGQTTEPDDTPAPGDPKRRPTFVIQLHHASSRHYDFRLEMDGVLKSWAVPKGPSLRVGEKRLAVEVEDHPLSYAGFEGDIPEGHYGAGHVGVFDHGTWACEGDPLQALAAGRIDFVLHGQRLAGGWKLVQTAMKGRQVQWLLIKRGDGEARDAEADDLLTAPMPKRTPAAKKRSADKTARAAPVARTATRKADVRWHARALQLHGARDAPYPHAFKPQLTDHRDSAPDGDRWLHEIKWDGYRLLADLHNGEVKLRSRNGLDWTDDFPEVVQAVQALPVRDARLDGELVVLDKEGRSDFAALQRVIDGSSKQPLRYIVFDLPGLAGADISRAPLLERKALLKELIGPAPGTLAFSEHVIDHGPQVFVASGKAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFLIVGYTAPKGSRVGFGSLLLATPDKGGLRYVGRVGTGFDDQSLRALLKALQPLAVKTPVLQLPAHVPFRAASVRWVKPVAVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTADAETGGEVEITHPERVVFPRQKLRKGDVADYYQRMARWILPEIAGRPLSLLRCPDGVGKACFFQKHHGPGLGDAVHAVPLQQKSGREDYFYVDDARGLLQLVQMNTLELHPWGATVADPEHPDRLVFDLDPGEGVSWAQVKAAARDVRDRLQEVGLQSFVRLSGGKGVHVVVPLQPKAGWDEAKAFCEAFAQAMALEQPDRYVATMSKAKRGGVIFIDWLRNTRGATSVCSWSLRARDAAGVAVPLRWEELARVSAADAFPMAKALARAKRLKGDPWQGIARLKQRLPSPKR
>NZ_LT906480.1|WP_005411776.1|29482_29875_-|hypothetical-protein
MPGLLKTLFLSIVALIGGVLSLALVSSVAGWLPPLLGLSPDSNSVQLGWDLAFSVLGGVAGISFATYYAPCWPRSHGFSIWSLIALGCGYAMWTAGADFPFWFVISLLASLPLQLLVGWWFGRRPSRDLR
>NZ_LT906480.1|WP_012478661.1|31208_32399_+|integrase-arm-type-DNA-binding-domain-containing-protein
MPLTDTAIRKTKPSASVQKLRDGGGLYLLLRPDGAKWWRWDYRRPVTGKRNTLSLGTYPDVSLAVARERHVAARKLLAGGIDPGEHRKAQKKAVVESSASTFEAVAAEYFSMRAGKLSAESISHERRIVERDLNPYLGRSPVGAIPARELLDALRRIESRGAVKTAHRARGIAGRVFRYAIATGRADRNPADDLRGALASSEVQHFPSITDPSLITGLLRATHGYQGSPVVQAALRLAPLVFVRPGELRHALWDDIDLDAGQWRFTATKTGQPHIVPLAVQAVAILRELHPLTCRAKYVFPCMIGKGRPMSENAVNGALRRLGYESGSMTGHGFRAMARTVLDEVLGFRPDYIEHQLAHAVRDPNGRAYNRTAHLVERAKMMQAWADYLDGLRTSP
>NZ_LT906480.1|WP_012478662.1|32995_33268_+|AlpA-family-phage-regulatory-protein
MLGSPTPPATAPGQPADHSRHDAGRGERFLRKPEVLSRTGISRSHLYGLMKRGRFPASIPLSPRVTVWLESDVDAWIATHIPDTHLRVQP
>NZ_LT906480.1|WP_012478663.1|33264_33468_+|hypothetical-protein
MKDTIVLTISNQKFNLSPEEAKFLAEHLRTAVAQPNLALNFSQSRTAQGGRIALSRGVAGSRSVTDC
>NZ_LT906480.1|WP_012478664.1|33477_33765_+|ogr/Delta-like-zinc-finger-family-protein
MTSSRAFLRCPHCDTAAIVRTSVLHSKLLRESLLQCRNALCGHTFSAYTEIVRTHTQSACPRNDICLPISSPAERAALSAQAKQEPVTTPGKARR
>NZ_LT906480.1|WP_024957481.1|34061_34271_+|hypothetical-protein
MSHDTLAAPSRFATRIAHHLGEIADTLDWDHSRWLALTARLEATGKAPEALTLGEVQHAIAATVQEAAR

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Crispr_ID: NZ_LT906480_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_2

546992-547127

Orphan

Consensus_repeat	Method
AATGCGTGTCGACCAAGGTCGACACCTACCGGGGGGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_2

>merge|NZ_LT906480|2|546992-547127|CRISPRCasFinder
AATGCGTGTCGACCAAGGTCGACACCTACCGGGGGGCCTGGCGCGCAGCGGTTGCCATGCGCGGCTTCGGTGGCGGCCGACCTTGGTCGGCGCCATGAATGCGTGTCGACCAAGGTCGACACCTGCCGGGGGGCCT

>NZ_LT906480|2|2|546992-547127|CRISPRCasFinder
AATGCGTGTCGACCAAGGTCGACACCTACCGGGGGGCCT	GGCGCGCAGCGGTTGCCATGCGCGGCTTCGGTGGCGGCCGACCTTGGTCGGCGCCATG
AATGCGTGTCGACCAAGGTCGACACCTGCCGGGGGGCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_012479030.1\|552517_553201_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_LT906480.1\|WP_024957099.1\|550758_551823_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225370
NZ_LT906480.1\|WP_005407923.1\|547933_549922_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236842
NZ_LT906480.1\|WP_005407919.1\|543959_544439_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183009
NZ_LT906480.1\|WP_005412128.1\|545871_546939_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143500
NZ_LT906480.1\|WP_024957096.1\|556584_557496_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293825
NZ_LT906480.1\|WP_024957104.1\|540643_541594_-\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236365
NZ_LT906480.1\|WP_024957103.1\|543150_543528_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_LT906480.1\|WP_005412122.1\|539767_540043_-\|DUF4031-domain-containing-protein	unknown	unknown	gnl\|CDD\|379076
NZ_LT906480.1\|WP_005407930.1\|554485_555001_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	unknown	unknown	gnl\|CDD\|179953
NZ_LT906480.1\|WP_005412127.1\|544588_545893_+\|D-amino-acid-dehydrogenase	unknown	unknown	gnl\|CDD\|234819
NZ_LT906480.1\|WP_005407925.1\|550338_550602_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005407927.1\|551819_552521_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_LT906480.1\|WP_024957100.1\|549965_550256_+\|DUF3247-family-protein	unknown	unknown	gnl\|CDD\|371627
NZ_LT906480.1\|WP_024957098.1\|553277_554486_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_LT906480.1\|WP_024957102.1\|543672_543849_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005407915.1\|541597_542452_-\|flagellar-motor-stator-protein-MotA	unknown	unknown	gnl\|CDD\|181655
NZ_LT906480.1\|WP_005407913.1\|540056_540545_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957097.1\|555191_556286_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_LT906480.1\|WP_005407916.1\|542542_543010_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|234692

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_012479030.1\|552517_553201_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	1.64639e-59
NZ_LT906480.1\|WP_005407923.1\|547933_549922_+\|PAS-domain-S-box-protein	gnl\|CDD\|236842	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional.	3.87629e-63
NZ_LT906480.1\|WP_005407919.1\|543959_544439_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	2.38136e-70
NZ_LT906480.1\|WP_024957103.1\|543150_543528_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	3.6098e-05
NZ_LT906480.1\|WP_024957096.1\|556584_557496_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293825	cd07739, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	4.20953e-98
NZ_LT906480.1\|WP_024957104.1\|540643_541594_-\|flagellar-motor-protein-MotB	gnl\|CDD\|236365	PRK09041, motB, motility protein MotB.	1.47147e-163
NZ_LT906480.1\|WP_005412128.1\|545871_546939_+\|alanine-racemase	gnl\|CDD\|143500	cd06827, PLPDE_III_AR_proteobact, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases. This subfamily is composed mainly of proteobacterial alanine racemases (EC 5.1.1.1), fold type III PLP-dependent enzymes that catalyze the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. hese proteins are similar to other bacterial ARs and are fold type III PLP-dependent enzymes containing contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	0
NZ_LT906480.1\|WP_005412122.1\|539767_540043_-\|DUF4031-domain-containing-protein	gnl\|CDD\|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	2.42364e-32
NZ_LT906480.1\|WP_005407930.1\|554485_555001_-\|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA	gnl\|CDD\|179953	PRK05174, PRK05174, bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase.	3.90362e-120
NZ_LT906480.1\|WP_024957100.1\|549965_550256_+\|DUF3247-family-protein	gnl\|CDD\|371627	pfam11607, DUF3247, Protein of unknown function (DUF3247). This family of proteins is the protein product of the gene XC5848 from Xanthomonas campestris. The protein has no known function however its structure has been determined. The protein adopts a Lsm fold however differences with the fold were observed at the N-terminal and internal regions.	9.01894e-24
NZ_LT906480.1\|WP_024957099.1\|550758_551823_+\|methyltransferase	gnl\|CDD\|225370	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis].	1.16743e-67
NZ_LT906480.1\|WP_005407927.1\|551819_552521_+\|pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.64966e-75
NZ_LT906480.1\|WP_024957098.1\|553277_554486_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_LT906480.1\|WP_005407915.1\|541597_542452_-\|flagellar-motor-stator-protein-MotA	gnl\|CDD\|181655	PRK09110, PRK09110, flagellar motor stator protein MotA.	2.19995e-164
NZ_LT906480.1\|WP_005407916.1\|542542_543010_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|234692	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB.	2.05325e-77
NZ_LT906480.1\|WP_024957097.1\|555191_556286_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_LT906480.1\|WP_005412127.1\|544588_545893_+\|D-amino-acid-dehydrogenase	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0

>NZ_LT906480.1|WP_005412128.1|545871_546939_+|alanine-racemase
MRPARALIDLGALRSNYRLARELGGGKALAIIKADAYGHGAVRCAQALEGEADGFGVATIEEALELRQAGIRAPILLLEGIFEPSDMALVAEHDFWFAVGSPWQLEAVAAFDSPRPLTVWLKLDSGMHRLGLDVDSFRAAHARLSALPQVERIVLMTHLARADELDSERTHEQAATFARAIDGLHGETSVCNSPALLGWPDVRSDWVRPGLMLYGANPLPDDTTLTERLRPVMTMQSKVIAERWIEAGEPVGYGARFVAKARTRVGVVALGYADGYPQFAPNGTPVLIDGQPGALIGRVSMDMLTVDLTAHPQAAVGSVVELWGSAPTLAELAPRCGVSAYQLPCAVKRVAKVYV
>NZ_LT906480.1|WP_005412127.1|544588_545893_+|D-amino-acid-dehydrogenase
MRVLVLGSGVIGTTSAWYLRQAGFEVTVIDRQPGPALETSFANAGQLSFGYTSPWAAPGVPKKAIGWLFEKHAPLAIKPGMDLAQYRWLWQMLRNCTHERYAINKARMVRMSEYSRDCLNELRAQIGIEFEGRDLGTTQLFRTQQQLDASAQDIEILAQYGVPYEVLDRAGIIQAEPALAHVDGLVGALRLPRDQTGDCQLFTRRLAQMCVDAGVEFRFDQDITGLEFDGDRITGVRIDGKLETADRFVVALGSYSPALVAPLGMRLPVYPLKGYSLTLPITDPAMAPTSTILDESYKVAVTRFDDRIRVGGMAEVAGFDLSLSQRRRETLELVVSDLYPKGGDLSRAQFWTGLRPATPDGTPVIGATPFRNLYLNTGHGTLGWTMACGSGRYLADLMSARQPQISTEGLDIFRYGQYGHAPQQENRTCVLPAR
>NZ_LT906480.1|WP_005407919.1|543959_544439_-|Lrp/AsnC-ligand-binding-domain-containing-protein
MATRTRELDKIDRKILRILQAEGRISFTELGERVGLSTTPCTERVRRLEREGVITGYHAHLDPAAVKASLLVFVEISLAYKSGDIFEEFRRAALKLPNVLECHLVSGDFDYLLKARISEMASYRKLLGSTLLTLPHVRESKSYIVMEEVKETLSLPIPD
>NZ_LT906480.1|WP_024957102.1|543672_543849_+|hypothetical-protein
MSFVHWIAIMKNQQNRHPGKEPQGRNPQQQQQQQMDSQQPHKGGKQQEQRSQKHPQQR
>NZ_LT906480.1|WP_024957103.1|543150_543528_+|hypothetical-protein
MKSTLSLLLMALLPLVAQAQVPTSSSPTATRSATTVAPQPAVPPPQAARPQPQVLPSPQPTQPIKSTGPAQVAPAPVPKPADKVYDRNGRIVPGVRPAGPNRVFDSRTGRYYDSVPAGDGQQIKR
>NZ_LT906480.1|WP_005407916.1|542542_543010_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MTAFDLTPPTATQTEALVAGLSSEERRVLLQHGTEAPFCGVFLDNKREGVYCCRLCALPLFRSSTKFDSGTGWPSFFAPFDPAHVREIRDTSHGMVRTEITCARCGSHLGHVFPDGPPPTYERHCLNSVSLSFTGNGEPWPDPLQRGGAEAGMAG
>NZ_LT906480.1|WP_005407915.1|541597_542452_-|flagellar-motor-stator-protein-MotA
MLIIVGFLVVIISVIGGYLGAHGRLGALWQPYELVIIGGAALGAFLVGTPAKTVKQTLQAMVGVFKGPRYKQQDYIDVLSLLYELLNKARREGFMALEDHVERPAESALFGNYPKVQADHHLIDFITDCLRLMIGSNIEPHELEPLLELELEKHHAEAMAPSQVLTKVADGLPGFGIVAAVLGIVITMGSIGGDIVEVGGHVAGALVGTFLGILLGYGFVGPMAAAMEARAEQDSRIYESVKTALLACLRGYNPKIALEFARKTLPSNVRPAFSDFEQHLKTVK
>NZ_LT906480.1|WP_024957104.1|540643_541594_-|flagellar-motor-protein-MotB
MAENKPTVIVRRVKKAGHAAHHGGSWKVAYADFVTAMMAFFLVLWLMATTNKNDRAAISEYFRNPSPLSGQNATPAPGMAGPGGASTSMIKLGGATDISRGNSNDPFQNQKEAVPQPVDQQQRDKQQLEALMKELQEAISRSQALEPFKDQLLLDLTPEGLRIQIVDKQNRPMFDLGSATLKPYTQQILHELAEYLNHVPNRISLTGHTDITAYSAARGYGNWELSADRANAARRALVDGGLEDSKITRVVGLSSSVLFDKTDPQNPINRRISIVVMTKAAEEAALAGAGPQVGLSAPTADPDVQAAQGEAAPVAR
>NZ_LT906480.1|WP_005407913.1|540056_540545_-|hypothetical-protein
MSQNSKAKRDKRKKQQAKRPFLRLNAQQQVQNHAVLTNEDGQVVAAIGLQGREWLLAIGGQTMGNAENPVPMLAMLKHLANVQEKEGRKVNLEYSELLQKLLDTLAAESEQTADEYLDKLVAEFEGVDAAEGEEGEAAEGDVAEEAAAEAAPAADSDSKPQA
>NZ_LT906480.1|WP_005412122.1|539767_540043_-|DUF4031-domain-containing-protein
MTVYVDDAVHPWRGQRWAHLMADTLAELHAMAAQLGIPPRAFQNKASGAHYDVTSELRAQAIALGARAISRHTDRELVKTVIANARAQYRP
>NZ_LT906480.1|WP_005407923.1|547933_549922_+|PAS-domain-S-box-protein
MMVPAPEPDLHHGVLERINAGFCVIQVLFEGDRAVDYRFIEVNDAFERHTGLKDARGQRMSALEPNHEEDWFRIYGEVARSGRPAQFEMEARALGRSFAVDAVRVGRPGEDKVGILFFDITARKQMEVELGESEARFSALADGLPMPVWVLDERGHARFVNSAFSEFFGGDETRVPEDVWRGLVHPDDASVFEYELQEALKAQRSMHALVRARRADGQWRWLEMNARPRFSRMGRFIGLAGSSPDVTERREIELAREELLQSERAARSAAENMARLKDEFLATLSHELRTPLTTILGWSELLLQRVDNTSPLYKGLNVIANSAGAQKRLISDMLDLSSMLLGKVQLEVEVLDLRTLLGEAIGAQELVAEGKALDVHLQLPEQPSLVLGDATRLQQVFWNLLSNAIKFTPAEGRIDVQLQADGTHWVITVRDTGDGIAPEFLNHLFSRFRQADGTTTRRHGGLGLGLAIVQQLVELHGGTVAAASEGHGHGATFTVRLPQHLPDAERRPLREVISGPILEPVIVEPYPLRGMHVLAVEDQPEVLEYLRRMLEEQGASVSAASSAGEALALLADTGHLQYHVMLTDIGMPGMDGYGLVRTLREDMGVDAATLPAVAVTALARADDRRRALASGFQEHVAKPYSVAQLVAAVRKVQVPRADSALH
>NZ_LT906480.1|WP_024957100.1|549965_550256_+|DUF3247-family-protein
MSRIAPRIHTDPAQIARLEALLPQLDGETQVELILHDGRRLLGTVAVRPTVQQYRNVAGDEGSNGQLRLDDYDTPVQQHHVWLDEIASIRRLPPRV
>NZ_LT906480.1|WP_005407925.1|550338_550602_-|hypothetical-protein
MRALFVGGVVDNSEMDLEGSHPPVHYPEDTGGGHSRYRLHQVGHGADGSVAYAVYGAPDLADDEVARVAEERAYARRFEATPTLFEH
>NZ_LT906480.1|WP_024957099.1|550758_551823_+|methyltransferase
MASSDDAPLQTLFLPFSQGALRWPEGPVAFLRARDGWPLREVAGNREVHCEQSFAPFAQPLQQAAGWTVSGQLDDVAGKGRYPLVLVLPPRQREEARALFARALALVADGGRIVACQSNNEGARSGEGDLKQLTGLGGSLTKNHCRVYWTAPMQGQHDADLAKRWLALDAVRPIVGGRFLSRPGVFAWDRIDPASALLAEHLPADLAGRAADLGAGYGYLSRELLERCPKITALDLYEAEQRALALAELNLAPPPRPLPLRFRWQDVTAGIEPGYDVIISNPPFHTPSRADRPDIGQRFIAVAAQALRPGGRLYVVANRHLPYEYTLNESFGAVRVIAERDGFKLVEAVKGKGK
>NZ_LT906480.1|WP_005407927.1|551819_552521_+|pseudouridine-synthase
MKLVKLIANLGYGSRKQVQWMFREGRVTDADGEVLYADDQVPHEAIRVDGEPLDPPVGLSIALHKPAGYTCSTKDTGRLIYDLLPPRFRDRDPVLSTVGRLDRETSGLLLLTDDGGLLHRIISPKSKLPKVYEVELSDDLRGDEVALFASGTLMLESEKTPLLPAELEVLDARRARLVLHEGRYHQVRRMFAATGNHVQALHRSRVGGLDLQGLDEGQWRQLTSTDLDTLFAP
>NZ_LT906480.1|WP_012479030.1|552517_553201_+|HAD-family-phosphatase
MTTIAALPFLPDAVIFDMDGLMIDSERVSLACWSQAADEFGLGLDEAVFLRMVGLGDRDTHALLRAQGIEDSVIEAVAARCHDLYEARTQTGLPLRPGILELLELLKAHAVPRAVATTTRQPRANRKLAAAGLLPYFDAVITSGDVARPKPAPDIYLLAAQRLGQAPERCLALEDSPAGTRAALAAGMTVIQVPDLVHPDEELRALGHRIVGSLVDAHALLLPLLPR
>NZ_LT906480.1|WP_024957098.1|553277_554486_-|beta-ketoacyl-ACP-synthase-I
MRRVVITGMGITSCLGNDLDTVSAALREGRSGITALADHAEAGLRSQVGGRVHLDLEALIDRKQKRFMSDAAAFAYLAMRDAIADAGLSAEQVSSLRTGLIAGSGGGSSEWQIGAVDLLRERGVRKVGPYMVPRTMCSTVSACLATAYQIKGVSYSLSAACATSAHCIGAAADMIRHGAQDIMFAGGGEDLHWSMSVMFDAMGALSTSFNETPASASRPYDKDRDGFVIAGGGGMLVLEDYDHAVARGAHIHAELIGYGVTSDGADMVAPSGEGAVRCMKMALQGVDRPLDYLNTHGTSTPLGDVTELNAIREVFGDAVPPLSSTKALSGHSLGAASVHEAIYCLLMMRDGFVAGSANIGELDPKVESFPILRESREQKLDTVMSNSFGFGGTNAALVFGRV
>NZ_LT906480.1|WP_005407930.1|554485_555001_-|3-hydroxyacyl-[acyl-carrier-protein]-dehydratase-FabA
MTRLHAFNREQLLASARGELFGTAAGRLPNDPMLMFDRITDIREDGGPHGKGMVRAELDIRPDLWFFGCHFIGDPVMPGCLGLDAMWQLTGFFLTWLGAPGKGRALGCGEVKFTGQVLPEAKLVRYEIDISRVINRKLVMAQSDARMYVDDREIYSARDLRVGLFTETGSF
>NZ_LT906480.1|WP_024957097.1|555191_556286_+|DNA-polymerase-IV
MTRLRKIIHVDMDAFYASVEQRDDPSLRGKPVVVAWRGARSVACAASYEARVFGVRSAMPAVRAERLCPDAIFVPPDFARYKAVSQQVRAIFLRHTDLVEPLSLDEAYLDVTEPKSGIELATDIARTIRAQIREETNLTASAGIAPNKFLAKIASDWRKPDGQFVIPPQRVDAFLAPLPVNRVPGVGKVMEGKLAARGIVTCGDLRQWALIDLEEAFGSFGRSLYNRARGIDERPVEPDQQVQSISSEDTFAEDLLLEDLTEAIVQLAGKTWNATRKTERIGHTVVLKLKTAQFRILTRSFTPERPPESMEELRDIALSLRARVDLPAETRYRLVGVGLGGFREKEPVVQGELFEHDMINPTET
>NZ_LT906480.1|WP_024957096.1|556584_557496_-|MBL-fold-metallo-hydrolase
MRTAALLLPLALAASFTSAPLLAAPATAAPAAATKSQLHLQTFHPGPQAMFSVSSVLIEGRRDAILVNAQFGASDARKLVELIRASGKQLTTIYISHGDPDYYFGLATLQDAFPQARIVATAQTVAHIQQTQAGKLAYWGPKMGADVPSRIVVPQVLDGDALQLEGQRLPLIGLDGPTPDRTVLWVPSLRAIVGGIPVVAGEHVWMADTQTPKSHADWLQTLQRLQALKPKVVVPGHYAPGAALDASALVFTADYIRAFDAETAKAKDSAALVKAMQARYPKLAGVASLELSAKVAKVEMQWP

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Crispr_ID: NZ_LT906480_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_3

856401-856505

Orphan

Consensus_repeat	Method
TTTGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_3

>merge|NZ_LT906480|3|856401-856505|CRISPRCasFinder
TTTGCCGGCCAGCGGCCGGCACTACCCCATCCACGCGTGGCCGCTGCATCGGGTAGGTGCGGGCCCTGGTCCGCGCGCGTTTGCCGGCCAGCGGCCGGCACTACC

>NZ_LT906480|3|3|856401-856505|CRISPRCasFinder
TTTGCCGGCCAGCGGCCGGCACTACC	CCATCCACGCGTGGCCGCTGCATCGGGTAGGTGCGGGCCCTGGTCCGCGCGCG
TTTGCCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_024957741.1\|854895_856356_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl\|CDD\|376743
NZ_LT906480.1\|WP_005408173.1\|854578_854899_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|378941
NZ_LT906480.1\|WP_012479217.1\|853107_853569_-\|DUF3106-domain-containing-protein	unknown	unknown	gnl\|CDD\|378633
NZ_LT906480.1\|WP_024957740.1\|853895_854450_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236367
NZ_LT906480.1\|WP_024957742.1\|856568_856988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_010481766.1\|863245_863731_-\|asparaginase	unknown	unknown	gnl\|CDD\|223330
NZ_LT906480.1\|WP_024957746.1\|859644_859980_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|316153
NZ_LT906480.1\|WP_005408180.1\|863810_864146_-\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
NZ_LT906480.1\|WP_024957737.1\|848641_849223_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_LT906480.1\|WP_024957745.1\|858991_859648_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957738.1\|849554_851876_+\|DUF1631-domain-containing-protein	unknown	unknown	gnl\|CDD\|377917
NZ_LT906480.1\|WP_024957739.1\|851927_853007_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
NZ_LT906480.1\|WP_024957736.1\|847158_847713_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_LT906480.1\|WP_024957743.1\|857110_857662_+\|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl\|CDD\|213809
NZ_LT906480.1\|WP_024957747.1\|859981_861004_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_LT906480.1\|WP_024957748.1\|861382_863125_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NZ_LT906480.1\|WP_012479214.1\|847709_848645_-\|exodeoxyribonuclease-IX	unknown	unknown	gnl\|CDD\|235591
NZ_LT906480.1\|WP_024957744.1\|857721_858816_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NZ_LT906480.1\|WP_005408181.1\|864142_864736_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_LT906480.1\|WP_005408171.1\|853572_853899_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024957741.1\|854895_856356_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl\|CDD\|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0
NZ_LT906480.1\|WP_005408173.1\|854578_854899_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	4.53939e-33
NZ_LT906480.1\|WP_012479217.1\|853107_853569_-\|DUF3106-domain-containing-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	6.2439e-21
NZ_LT906480.1\|WP_024957740.1\|853895_854450_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	5.5191e-63
NZ_LT906480.1\|WP_024957746.1\|859644_859980_+\|transcriptional-regulator	gnl\|CDD\|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	1.04901e-22
NZ_LT906480.1\|WP_005408180.1\|863810_864146_-\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	0.000174062
NZ_LT906480.1\|WP_024957737.1\|848641_849223_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.01468e-51
NZ_LT906480.1\|WP_024957738.1\|849554_851876_+\|DUF1631-domain-containing-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_LT906480.1\|WP_024957739.1\|851927_853007_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
NZ_LT906480.1\|WP_024957736.1\|847158_847713_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.81267e-38
NZ_LT906480.1\|WP_024957743.1\|857110_857662_+\|putative-Fe-S-cluster-assembly-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.15754e-102
NZ_LT906480.1\|WP_024957747.1\|859981_861004_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.07079e-18
NZ_LT906480.1\|WP_024957748.1\|861382_863125_+\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.18691e-125
NZ_LT906480.1\|WP_012479214.1\|847709_848645_-\|exodeoxyribonuclease-IX	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	1.15312e-84
NZ_LT906480.1\|WP_024957744.1\|857721_858816_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NZ_LT906480.1\|WP_005408181.1\|864142_864736_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	4.9247e-59
NZ_LT906480.1\|WP_010481766.1\|863245_863731_-\|asparaginase	gnl\|CDD\|223330	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis].	6.49e-30

>NZ_LT906480.1|WP_024957741.1|854895_856356_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MNISTVELLDWLVKASYLVAATLFLLGLQRMASPLTARSGIRWAGLGMLLATAATFFLPELHNVPLILVALLLGAGLAWWSAGKVAITDMPQMVALYNGMGGGSAAAIGAVELLRYAFLANRDTSHWSAQALADLAARQPSGTVLLLAMVGAAIGAVSLSGSVIAWAKLDGRLDKRVTWPGQQVMNLLVALAVVVLAIIAASTLSTWAIVAFFVLALALGVLMTLPIGGADMPVVISLYNAFTGLAVSFEGYVLGNEALIIAGMMVGAAGILLTRLMAKAMNRPIRNVLFSNFGGGAGGEAQAISGSQKPIEAADVAAMMAFAERVVIVPGYGMAVAQAQHKIWELAQRLGQRGVKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFANTDVVLVIGANDVVNPVARTDPASPIYGMPVLDVVNARNVVVIKRGKGTGFAGIENALFYADNTRMLYGDGAEAAASLVSELKALDGGH
>NZ_LT906480.1|WP_005408173.1|854578_854899_+|NAD(P)-transhydrogenase-subunit-alpha
MSDGFVALYIFMLAAIAGHVIISRVPVILHTPLMSGSNFIHGIVLIGAMVVLGHAQTPLEKALGFLAVVLGAGNAAGGYVVTARMLEMFKPSAPKGGKDEPKEPQA
>NZ_LT906480.1|WP_024957740.1|853895_854450_-|RNA-polymerase-sigma-factor
MLVSSPVPPSAETDALPASLEAFLASVGPRAFRFAEAGLRQREDAMDAVQDALLRMLDYADKPAAEWAPLFWSILRRRVIDVQRRRRFRLPFWRDNQDAQGGEIDWADPGPDPAQAHEQRQQYQQLVDALRRLPARQREAFTLRVLQDLDGATTARAMGCSEGAVKTHLARARQALQDYLEIHP
>NZ_LT906480.1|WP_005408171.1|853572_853899_-|hypothetical-protein
MNRSLPSDDTLRSLHAQSLHALSPATLARLRQARHGASATRHGRLRWWLASACSLVVALGLGLQFTGHGTLTGPAPAPVLASVEDNSALYDENPDLYLWLGDTDLAME
>NZ_LT906480.1|WP_012479217.1|853107_853569_-|DUF3106-domain-containing-protein
MSRLHTLPLLMTLLLLPALPALAQSAAPAPAARPAPATPLPAWEQLSEAQRESLLAPLRDRWNSADAGQRQRMLSHGQRWQTMSPEERDKARRGLRRFEHMSPEQREQARALFGQMRELPPAQRDALRERWSQMTPEQRKDWVRDNPPPAKPR
>NZ_LT906480.1|WP_024957739.1|851927_853007_+|NAD(P)-transhydrogenase-subunit-alpha
MAVALLGIKETAPGERRVALTPETARKLGALGITVWYEAGAGVAAGFTDAAYDDAGARVFDADRWGEIDILLCVQAPPASVLEQLKPAASVVGLLAPASDPALAALAAGDRLQLFPLQQLPRTTRAQAMDVLSSQAGMAGYKAALIAADRAPRFFPMLTTAAGTVRPAKVLVIGAGVAGLQAIATARRLGAQVEGFDVRPETREQIQSLGARFLDLGVSAAGEGGYARALTDEERAEQQRRLADHLRSVDVVICTAAVPGRPAPTIVTAAMVEGMATGSVIVDLAAESGGNCALTQPGQCIEHQGVTIDGPLGLASRGATQASEMYARNLLNFVALFVREGQLGFDWEDELLAKTRWRA
>NZ_LT906480.1|WP_024957738.1|849554_851876_+|DUF1631-domain-containing-protein
MMSAPTPMGSPGRDPAQLQRARDMVLPALCQAFGAALARFDDALFDRAGNAGSSQLLFLDAMRELRRRREDIAAAFAGHLQRAWDALASGEPLSAEATLSGPAEDGLSLLAEHVLESRLAVRNFATVLLRDFKPVLARLDRRLGRLIGGAELDADHNPVSPEHLGVAIHEAFAGCELAPEVHLVLIKLCERDLRAPVGRIYEKLDEQLAAAGVMSQMGAPRRPLSSAPDPRMAPGADDLVEPRHAAGFESDFSDDEQAAPAWAQRFAARWSERRGHMQQHLGGEEAGSGEAYAGQQGMLLEALHELLQQTRHVREDATSAAQVAVGQHRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSSATRLGVDPGQTRLDPQDEDAIDLVGMLFDVMLDERELEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERMLMAKVEEIIERLVAEFNENLAIFLTLEEEFREFLVQHRRRVEIAERRAAETQRGQEKLEMARSRAGAELDRRIGDATLPPAIAEFLRQPWQHHLTLALLREGEEGASVAEALSLADGLLEEVAEARRQIVGKPWLQAWQPVLAKVFASVGVHGDAATGAIDALHDTLQGIAESRPELQRALPELPQVALPAPPVAESPAVELGGQIDADDFDNADADRFRRMEIGNWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHVDDGAFDSAMQGVIDRLDPGSATLH
>NZ_LT906480.1|WP_024957737.1|848641_849223_-|nitroreductase
MPDPAALLALDARRSVPSRQLGEPGPDPATLQRMLASAVRVPDHGKRVPFRFLKIAGDARHTLGDFLAERSRQRDPHAGEAVFEKDRQRFSHAPLVIVVVASPRPDPKVPEQEQLMTAGCVCFALLQAAQALGFGAQWLTAWMAFDPAVHAYLGLAEGEGIAGFIHIGTPKAAVPERERPDPATLLRDWTPPA
>NZ_LT906480.1|WP_012479214.1|847709_848645_-|exodeoxyribonuclease-IX
MTLPVPPPSLYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHEYEADDLIGSALHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWNVAGVKARHGVHAHQIADYLALCGDAVDNIPGISGVGSKSAAVLLAHFGSMDALYERLDEVPFLRLRGAAQMAVRLREQREHAQLWRQLTTIALDAPLEGSQPGLLRQTADPELLGGLCQTLRFGPMTRRRLFDAAGVPDILPTHSEPA
>NZ_LT906480.1|WP_024957736.1|847158_847713_-|NUDIX-hydrolase
MSQRNTEAPRVVYEGKYQRMLVRGTWEYSERTHAGGLAAIIIAVTPEDKVLFVEQFRVPLQAPTIEMPAGLVGDIHAGESIEVSAVRELEEETGWTADHAEVLMIGPTSSGASSEKIAFVRATGLRRIGEGGGDDSEDITVHEIPRAQAAAWLVQKMGEGYELDAKLWAGLWMIEHHLDGRPRG
>NZ_LT906480.1|WP_024957742.1|856568_856988_-|hypothetical-protein
MSSNAARARTVTWLWPIMLLLGLVVAPLAWMVLALMTGRQVGWMAVLTALELVFMLRMGTLGPGRLRIVLVVVGTLLVAAVANWTIASAWMGGSIGLDLWDATMRMGPHLAWTLITLANGAVEWLWLALGLAVGAWLAR
>NZ_LT906480.1|WP_024957743.1|857110_857662_+|putative-Fe-S-cluster-assembly-protein-SufT
MYSRSSEPVHFERDCEAVMVPQGDTVTLPAGSYGYITQALGGSYSVFVEGNLFRIAGKDGDAIGKEAPAPLELPADATDEQVEQLVWQQLRTCFDPEIPVNIVELGLVYEVEIKHLDEGKREIDVKMTLTAPGCGMGDILVDDVRSKLEMIPTVAEADVDLVFDPPWNQHMMSEAARLETGML
>NZ_LT906480.1|WP_024957744.1|857721_858816_+|branched-chain-amino-acid-aminotransferase
MSQSIPSFAVTRSDHPRSAEERAQILEKPGFGLHFTDHMVEVRWDKDTGWHNANVRAYGPLQLDPAAAVLHYGQEIFEGIKAYRHADGSIWTFRPDANGRRLQRSAQRLALPELPVEIFVESLKQLIAVDSDWVPSADESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKGVAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPVEGKYLEELGGMNVFLVYKDGTLVTPELSGSILEGITRESILQLARDRGMKVEERKVSIDEWKQGVASGAISEVFACGTAAVVTPIGQLKGEGFSVGDINAPAGEVTMSLRKELTDIQYGRLPDRHNWLVKLG
>NZ_LT906480.1|WP_024957745.1|858991_859648_+|hypothetical-protein
MQQSSVIDPSSRLQALTREYSRYSRSAGGLSAMAGGIACLASFLAGALLPTTLALRIVLIAVPVLWIVGKQWLARRYYQRLGQVEEQVTPVERNFQRFFITFTALVSVLVIGSVLARLAPIGQLPWDLRAIGYLAVVALLPWVVWRWLRTPLEFIVGVFLLCQAALAFTGQAYGFGLSTAVFPLASVVLIVVGWRDHQRFQRLQVEMRAFMAARTNLE
>NZ_LT906480.1|WP_024957746.1|859644_859980_+|transcriptional-regulator
MTQLPDSRALLQLDRLIHEPARLLILSILAGAESAEFGFVEHLSGLSKGNLSSHLSKLEAAGLVAINKSFRGKRPLTTLQLTPMGRTALAEYRTQLAAIVAGIPDPDRKDA
>NZ_LT906480.1|WP_024957747.1|859981_861004_+|M23-family-metallopeptidase
MTLLPRLFAVLVVSFSALTGVAAAADPRQQGATLTTQFYEGHVDALWERMTPQMQAGLKSPQNLVALREQVLAGWGAETELVSEKVEKVDGFDTYLRQARFARSPAIIQVLWAIDADGRIGGFYIRPLQTTPPQAAASGFLDYQTRTRLQLPFDDEYFVFWGGRTVEQNYHAAHAGQRFALDLLVVRDGRSHRGDGLRNDDYYCFGRPILAPADGTVVDVVEGIADNVPGQMNAAQLTGNRVILDHGNEEYSVLAHLRQGSVRVAQGQVVRSGAHLGDCGNSGNSSEPHLHYQLQAGPVFGVGEALPAQFSGYVADGQPVARGEPVKGQRIRPASVPQAK
>NZ_LT906480.1|WP_024957748.1|861382_863125_+|S8-family-serine-peptidase
MSQVTQPRVRRVWVVLGASVLSSLLLATPALAGDVQLSGLQSAPTHQRFIVKYRDGSAAVANTTALASSLKTAAAGLASSQGRALGLQEVRKLAVGPTLVKTDRPLDQAESELLMRKLAADPNVEYVEVDQIMRATLTPNDTRFSEQWGFGTSNAGINIRPAWDKATGTGVVVAVIDTGITNHADLNANILPGYDFISDAAMARDGGGRDNNPNDEGDWYGANECGSGIPASNSSWHGTHVAGTVAAVTNNSTGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANANPAEVINLSLGGGGSCSTTYQNAINGAVGRGTTVVVAAGNSNTNVSSSVPANCPNVIAVAATTSAGARASFSNYGTGIDISAPGQSILSTLNTGTTTPGSATYASYNGTSMAAPHVAGVVALMQSVAPSPLSPAQVESIIKSTARPLPGACSGGCGAGIIDANAAVAAAINGGGNPNPGGNVLQNNVPVTGLGAATGAELNYTVAVPAGSTQLRVAISGGSGDADLYVRQGSAPTDTTYTCRPYLSGNSETCTINSPAAGTWYVRVKAYSTFSGLTLNAQY
>NZ_LT906480.1|WP_010481766.1|863245_863731_-|asparaginase
MEELLVVTTGGTIDKIYFDDKSDYQIGDPQIGMILRELGVTFRFNVIPILRKDSLHINDEDRELIRATIAAQPTRHVLVTHGTDSMVQTGKVLATIPDKTIVMTGALSPARFRGSDAEFNIGCAIGAVQSLPSGVYIAMNGRIFDPQHVRKNVAANRFESV
>NZ_LT906480.1|WP_005408180.1|863810_864146_-|DUF2069-domain-containing-protein
MSRPPRTVLLLALMGLAALFAGWFINDKHWLATQLVFTAPPLALAFALRLGWRKAGFWASVLALGWFSHGVMSAWSHPETRWLALIEIALALLVIFSASLPGLRARFGKRR
>NZ_LT906480.1|WP_005408181.1|864142_864736_-|NAD(P)H:quinone-oxidoreductase
MGEILVLYYSRGGSVARLARQIARGIGEVPGMSARLRTVPPVAAVTQTAQPPVPDDGAPYVSVQDLVECQGLLLGSPTRFGNMAAPVKHFLDGLGAEWVNGTLSGKPAGVFTSTASMHGGQESTLLSMQVPLLHHGCVIVGIPFTEPALSHTTSGGTPYGASHVAGAADDPQPTDDEAVLARALGRRVADIAQRLAR

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Crispr_ID: NZ_LT906480_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_4

1035825-1035929

Orphan

Consensus_repeat	Method
TGGTTCATGCCGCCAGTTTTCCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_4

>merge|NZ_LT906480|4|1035825-1035929|CRISPRCasFinder
TGGTTCATGCCGCCAGTTTTCCCGCGTCAGAACACGCTGTCTTTGAAACTGGTTTCCAACTTTCCCGGGCAGCGACAGATTGGTTCATGTCGCCAGTTTTCCCGC

>NZ_LT906480|4|4|1035825-1035929|CRISPRCasFinder
TGGTTCATGCCGCCAGTTTTCCCGC	GTCAGAACACGCTGTCTTTGAAACTGGTTTCCAACTTTCCCGGGCAGCGACAGAT
TGGTTCATGTCGCCAGTTTTCCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_049397751.1\|1041800_1042061_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957613.1\|1039501_1041238_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226810
NZ_LT906480.1\|WP_050426959.1\|1041238_1041787_-\|DUF3486-family-protein	unknown	unknown	gnl\|CDD\|371834
NZ_LT906480.1\|WP_024957614.1\|1037978_1039505_-\|DUF935-family-protein	unknown	unknown	gnl\|CDD\|368731
NZ_LT906480.1\|WP_024957622.1\|1031620_1032097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957624.1\|1030643_1031399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957623.1\|1031402_1031624_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957609.1\|1042434_1042941_-\|lysis-protein	unknown	unknown	gnl\|CDD\|222781
NZ_LT906480.1\|WP_024957620.1\|1032636_1033131_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957608.1\|1042940_1043459_-\|lysozyme	unknown	unknown	gnl\|CDD\|381619
NZ_LT906480.1\|WP_024957607.1\|1043677_1044097_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957610.1\|1042120_1042438_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226578
NZ_LT906480.1\|WP_024957618.1\|1034262_1034604_-\|DUF2190-family-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_153857040.1\|1029952_1030093_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957619.1\|1033292_1034237_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957616.1\|1036128_1036698_-\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
NZ_LT906480.1\|WP_024957615.1\|1036697_1037975_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309383
NZ_LT906480.1\|WP_024957621.1\|1032093_1032627_-\|DUF1320-domain-containing-protein	unknown	unknown	gnl\|CDD\|369176
NZ_LT906480.1\|WP_024957625.1\|1030134_1030644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_143566002.1\|1034626_1035742_-\|peptidase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024957610.1\|1042120_1042438_-\|hypothetical-protein	gnl\|CDD\|226578	COG4093, COG4093, Uncharacterized protein conserved in bacteria [Function unknown].	0.00361979
NZ_LT906480.1\|WP_024957621.1\|1032093_1032627_-\|DUF1320-domain-containing-protein	gnl\|CDD\|369176	pfam07030, DUF1320, Protein of unknown function (DUF1320). This family consists of both hypothetical bacterial and phage proteins of around 145 residues in length. The function of this family is unknown.	4.48991e-23
NZ_LT906480.1\|WP_024957616.1\|1036128_1036698_-\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	7.19254e-24
NZ_LT906480.1\|WP_024957614.1\|1037978_1039505_-\|DUF935-family-protein	gnl\|CDD\|368731	pfam06074, DUF935, Protein of unknown function (DUF935). This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.	5.97021e-89
NZ_LT906480.1\|WP_024957613.1\|1039501_1041238_-\|hypothetical-protein	gnl\|CDD\|226810	COG4373, COG4373, Mu-like prophage FluMu protein gp28 [General function prediction only].	2.41541e-107
NZ_LT906480.1\|WP_050426959.1\|1041238_1041787_-\|DUF3486-family-protein	gnl\|CDD\|371834	pfam11985, DUF3486, Protein of unknown function (DUF3486). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are about 190 amino acids in length.	4.16675e-33
NZ_LT906480.1\|WP_024957615.1\|1036697_1037975_-\|hypothetical-protein	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	2.35601e-11
NZ_LT906480.1\|WP_024957609.1\|1042434_1042941_-\|lysis-protein	gnl\|CDD\|222781	PHA00276, PHA00276, phage lambda Rz-like lysis protein.	1.62593e-05
NZ_LT906480.1\|WP_024957608.1\|1042940_1043459_-\|lysozyme	gnl\|CDD\|381619	cd16900, endolysin_R21-like, endolysin R21-like proteins. Unlike T4 E phage lysozyme, the endolysin R21 from Enterobacteria phage P21 has an N-terminal SAR (signal-arrest-release) domain that anchors the endolysin to the membrane in an inactive form, which act to prevent premature lysis of the infected bacterium. The dsDNA phages of eubacteria use endolysins or muralytic enzymes in conjunction with hollin, a small membrane protein, to degrade the peptidoglycan found in bacterial cell walls. Similarly, bacteria produce autolysins to facilitate the biosynthesis of its cell wall heteropolymer peptidoglycan and cell division. Endolysins and autolysins are found in viruses and bacteria, respectively. Both endolysin and autolysin enzymes cleave the glycosidic beta 1,4-bonds between the N-acetylmuramic acid and the N-acetylglucosamine of the peptidoglycan.	4.2333e-55

>NZ_LT906480.1|WP_143566002.1|1034626_1035742_-|peptidase
MQQIADSYDPALHEAPIVVGHPKTDDPAYGWGKTLQAKDGLLVAEPHNVDPAFAELVNNGRFKKISASIFMPDSPGNPTPGKYYLRHIGFLGAQPPAVKGLKSASFAEGDDAACFAMSLAPLGWTLTDLFRRFRDWLIDTQGLETADQVIPDWQIRGIESSTRDDDEARNSALFASPLLTQFPRSAIGAPAPIPATPPTREQVKSEIDPMSQQNTPEHAQRQQQLDQQASTLDAREKALAAREQSARREDAVAFAEGLVKEGKLLPRQQPAVVELLLAQPNGKEPLNFAEGETTVSKPAESVLRELLTSLPKAVDFGEKSGGDAPNAAANFAAPPGTHVDAGRADLFNQAKAYQQQHPGTSWAAAVAAVGG
>NZ_LT906480.1|WP_024957618.1|1034262_1034604_-|DUF2190-family-protein
MSQNIALLTLSVLAAAALTHNRFVSPTGEVAAAGGNACGVARSDAAVGQLAPVDVLGTTQVTAGGAIAAGAALQVGADGKAITADAGKVVARAAPGATATADGDVLEVILIPN
>NZ_LT906480.1|WP_024957619.1|1033292_1034237_-|hypothetical-protein
MSGQMTPGQVRVVDPILSEHARGYRQAQLVATALFPFADVAAYGGQVIEFGKESFKIYNAKRAPGANTKRIRFGYEGKPYAIVPSALEAPVPREHMRDASQVPGINLSTRAVNIVLRSLLLEYEVDSAKIATNAANYDNDHKVALAGNNVWSNAASNPAQDVETGKEAVRDSIGLYPNTMLLSAKAFKQLKQHPKLIDRSASTGIRKVTLDLLKQVFEIDNIVVGGGVVADDNGAFGDVWGTSAVLAYVSPGADVNANVEEPSYGYGYRIEGMPLVEVPYWDNSAKSWIYGVSNDATPVLAGMAAGYLISGAGN
>NZ_LT906480.1|WP_024957620.1|1032636_1033131_-|hypothetical-protein
MAKPRTAPPSAPKTVQDDQPADVPVVTEDKTADAPPATDGLVPEQGHSELETATSAASAGDGAAVDPLQSDHPAADQDAAIDAGAPSPEADITIEVAAGGADSPNALVSDGLWLPMCFEVLSPFKHNDVVVKPPAWIEMTWEEAQAYQDAGVLGDDPVAPEELE
>NZ_LT906480.1|WP_024957621.1|1032093_1032627_-|DUF1320-domain-containing-protein
MSYCTLALLSAAKLAQELAQVATPERYPIVDDALMDATLLGSDRSAFDPADVAIADEAAAHVQRALDDADGVINGYLVMRKPKPYPVPLPAPVPGIVSTWARWIARYLLHKDRVNTEERTDPVVRDYKEALAFLEKVRKGEFSLGEDDPLPAPSSGAPEVCAPPREFSHRTLQDYGR
>NZ_LT906480.1|WP_024957622.1|1031620_1032097_-|hypothetical-protein
MSTQPFDIGLVRDRIRQGVSEKELRQVQGSADYAAVTALRDFPAPCCYVLLAREMPLETKTGVSIPGQQSRLAQLVEVNFAVVTVCRNYREQRGAQVIDELRLLLGKVRQPLLGWTPPIPGGRACQLIEGNLEDYDAATALWVDVWKTQAVLQPEIPR
>NZ_LT906480.1|WP_024957623.1|1031402_1031624_-|hypothetical-protein
MTTQTTQKHTIKKAGLTLASKPIAEGETVELPADLVPWAVERGFIDAPDADSSPNPSRKANGQATAAIAQEAK
>NZ_LT906480.1|WP_024957624.1|1030643_1031399_-|hypothetical-protein
MSDTEYFSLQGRVYLGLRNADGSRAPARWAYDASVLELTMSSTRETKKESWSGVRGVGATMTTERNLGVNLTLGQLNTDHLALATDGTRMELAAGSAANEAIGTVKPGDVVALEYAAISALVLEGGTPAAPLVLDTDYTVNLTTGIVTFLTAKTAVVAKTYQYAAHSLVKVFESTKSEYYVLFDGVNSVDGTTMRFRGEVHRVTFPASETLSLINDSFGEIALTGEAKIDPVRQADPRFGLYARALLVDAA
>NZ_LT906480.1|WP_024957625.1|1030134_1030644_-|hypothetical-protein
MAKVIGNVGQRSPGSGTTDPGAIAGELDVLAGQQQGQLGGKTITVREYGFFEAARILQTAAPLVTDLQPLFEGADPPSMLQVMDALMSHPDLIRHLLACSIAAPPADAKDHAAEVREQEAWLETLNETDGEHMLLLWWQANSSFFLRRLLRNAVSQKALPSVTDASSPT
>NZ_LT906480.1|WP_153857040.1|1029952_1030093_-|hypothetical-protein
MTKRQISLAWEHVQAQQRRARRERITDANAAYAGGNSMTTLLKDLK
>NZ_LT906480.1|WP_024957616.1|1036128_1036698_-|phage-virion-morphogenesis-protein
MAQLEVTLDSATPGLAEALRQLEGEARQLILKDWGEYLLRSTRERAAKERDPTGHRWRALEPSYKRWKQKKRPGVPILKFDFHMLGDMASWQTDGNDAVLVGTNAPYGAIHQFGGTIQRAARPANIHLKTGKGGSRFVKASRRNARYKRSVTMPAYTNTIAARPWLGVSREDEKELLDIAQDHVSGAFE
>NZ_LT906480.1|WP_024957615.1|1036697_1037975_-|hypothetical-protein
MAAVAYAQLPFKEQIEFFRRKKNVLTESYLDVWESEHDTSFMVAGANRDALLADFRQSIDRVIAEGRTLEQFREDFDRIVATHGWDYNGGRNWRSRVIYETNLRQSYNAGRWAQLQQLIKVRPFWRYNHNDAVEHPRPLHVSWNGMVLRHDDPWWRYHYPANGWGCQCYVDALNERDLRRLGKDGPDKAPEIVMQPVIVGQRSPGGARTVLTPAGVDPGFGYAPGATADHWPSGRGGPVTPPSLTGQLTSALQNALEAGARLPAAPAAASAAQALARPRARDALQAGYASWLASIDADAAHAARYLAGALSPGLVSQLQRATVRPATAAFAVLAEQLPITRPGAVAIAAAELPIRLLDAVAILLDAAAGRLRYVLAVGRPAFIVVDVAISETGVSTVQSQLQMLMPAELQRGVADGTLQLLQGDI
>NZ_LT906480.1|WP_024957614.1|1037978_1039505_-|DUF935-family-protein
MTTARPEIGREIATTADGIDITRGYTGPLLLPFDSVLRNRGGYDLQIYEQVLSDPEVKTTFGSRQDSVVACEWQVEPGGEKRIDRQAAEYLQEQLHGIGWDNVTRKMLFGVFYGYGVAEILYKVDGTRIGLKDIKVRNRRRFRYGKEGDLRLLTQTQMTEGVPAHAPYFWNFCSGADHDDEPYGLGLAHWLYWPVLFKRNGLKFWLIFLEKFGMPTAVGKYDTNATDPEKAKLLQATRAIQTDSGIIMPKGMELALLEAGRSGTADYKALQDYMDATIQKVVLGQTASTQGTPGKLGNDQLQREVRRDIITSDADLVCESFNKGPARWLTEWNFPGAAIPRVYRVTEEPEDLDATASRDKKILDLGYKPKQVYMDQTYGDNYEPVQAPQDPPAVPTAIDGAQFADASGAVVSLLRRHYPAAFADATPKTPDPAVELGQQLDRRLSPIGAGWVEQIRQLVDEVDSLEQLRDRLFELHPNMTLDDYASVMADAMTAATLAGRTDIQGAGD
>NZ_LT906480.1|WP_024957613.1|1039501_1041238_-|hypothetical-protein
MSALGSLPDTERILDWDELPESVRAISANFDISKAGVLMAHQSEWIRMQEGLDIAVCEKGRRTGITFAQALADTITAASAKDAGGDNVWYMADTKEKGLEFIGYVAKFAPIIARGQASRIEQHIFQDQQPDGTSRQIQAFRVRFASGFRITALSSRPENIHGLQGVVDLDEAALHKDVAKVLESATALLIWGGRIRVWSTHRGKKNPFNQLVQDVQAGRYGKKAGVIRISFDDAVSNGLYERVCAMRGKDATAEGKKEWYTAIRSAYGPRKAAMREELDVIPRDGDGSAIPSVWIDRAMPEVRPVLRLVFDDDFPKRSEKEREIWCSVWIATTLLPVLRAAVAGFTGRWAIGMDFARHRHFSVIKPAKVGQDLRRDVPFLIEMANAPTRQQEQILWALLDALKEGFPGRWSFAGDATGPGQTLMEYTGDRYGRAELDTETGRYIGGPIHEVTLSRPWYGEWMPKYIALFEDGFLSLPRDASLEDDHRAVEYVDGIPMVPRLERKDLQDPELVRHGDGAIAGVLMQFAALNHVTSVPIEFQAAGARAYIGDGRADGVATVVTDDAFGTVSGGNDFGGFA
>NZ_LT906480.1|WP_050426959.1|1041238_1041787_-|DUF3486-family-protein
MSKIDLLPAEVRDELDRRLVANAFGGSISLSEWLGEQGYEISKTTVNERAKRLKRRLASISASTEAMKLVAEQAPDNAAERGSALLGLLQTDLFEALLQFQEAADQDDENISPADRIALYSKAAKAIAELTRSSIVREKWAGEIRQKALIDAASRVEEAARAQGLDAAGVDFWKNQVLHGVG
>NZ_LT906480.1|WP_049397751.1|1041800_1042061_-|hypothetical-protein
MLLVLDRSRPYPIGEAVLAGAAQDMYPDATALEVRRELDYLDTRRLIDITKSPSGPWSAELTRHGVDIVEYSIDCGPGIARPPKYW
>NZ_LT906480.1|WP_024957610.1|1042120_1042438_-|hypothetical-protein
MIVEVQPLYLVWFAGIGITLLGGLIAGGRWLVNQLQQRTDQQLAILINDSKRWREVEGELTNFRLEVAKDYVRREDYARGQSVIEAKLDAVASEIKNMQNKGSKS
>NZ_LT906480.1|WP_024957609.1|1042434_1042941_-|lysis-protein
MIRALIVTIALLLVLLLVAIAAALLYRGNALDAQARDATSQQRLTTLQSQLEDERSARDTEHTQATVMAQIGDEHEHDREASASIPAAVVADVHSGNLRLRNDLATCHTARLSEAVSGAVERDASAQLRAEVAGDFVRVGRDADKHVRACQRSISALTGQRLSVETSP
>NZ_LT906480.1|WP_024957608.1|1042940_1043459_-|lysozyme
MAAEQPGSKAVPIAGGMLATMLALLLGLVQPFEGYSAQPYRDVVGKLTVCYGHTANVEQRTYTRAECERLLQSDLGVAWNTVQSCIKVPMTDYQAAALTSFAFNVGPGGAGVKDGLCTLRNGQQPRIRVYANQGRWDLACAQLSNWANAGGRPYKGLERRRTAERAMCEGRY
>NZ_LT906480.1|WP_024957607.1|1043677_1044097_-|hypothetical-protein
MKKLVFSLAVLLVLLGAKAVIGQDFKDQNLKHLVIGKTTLSEAAALLEAPPLRSSVGASGATGYTWQYIQSKVSLWTGNVRSSSKQVILVFNTDGTFQRIFQMDGIQLPPEDLERLFSQPAAEHAHRQQNQVNSRAVPD

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Crispr_ID: NZ_LT906480_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_5

1606310-1606399

Orphan

Consensus_repeat	Method
CGGTCGACTCTACAGGTGCATCGGCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_5

>merge|NZ_LT906480|5|1606310-1606399|CRISPRCasFinder
CGGTCGACTCTACAGGTGCATCGGCGGGATTTTGGCGATCTGGACGAAGAGCAGTCGACCAACGGTCGACTCTACAGGTGCGTCGGCGGG

>NZ_LT906480|5|5|1606310-1606399|CRISPRCasFinder
CGGTCGACTCTACAGGTGCATCGGCGGG	ATTTTGGCGATCTGGACGAAGAGCAGTCGACCAA
CGGTCGACTCTACAGGTGCGTCGGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_005408679.1\|1603147_1603897_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184516
NZ_LT906480.1\|WP_024958448.1\|1602378_1603053_-\|deoxyribonuclease-V	unknown	unknown	gnl\|CDD\|236937
NZ_LT906480.1\|WP_005408684.1\|1612238_1612964_+\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_LT906480.1\|WP_038646471.1\|1595655_1597071_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_LT906480.1\|WP_005412695.1\|1607090_1610555_-\|transcription-repair-coupling-factor	unknown	unknown	gnl\|CDD\|224118
NZ_LT906480.1\|WP_004150340.1\|1610704_1611250_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT906480.1\|WP_005408676.1\|1599652_1600579_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_012479575.1\|1615839_1616250_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_038645752.1\|1597357_1599607_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|237410
NZ_LT906480.1\|WP_038645763.1\|1606428_1607046_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_LT906480.1\|WP_038645746.1\|1592613_1593741_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277368
NZ_LT906480.1\|WP_038646467.1\|1594342_1595560_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
NZ_LT906480.1\|WP_038645760.1\|1604058_1606152_+\|M13-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341056
NZ_LT906480.1\|WP_032964382.1\|1616419_1617997_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349937
NZ_LT906480.1\|WP_024958160.1\|1618150_1619554_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_LT906480.1\|WP_038645755.1\|1600800_1601781_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
NZ_LT906480.1\|WP_024958158.1\|1612967_1614428_+\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_LT906480.1\|WP_038645749.1\|1593814_1594264_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_LT906480.1\|WP_005408686.1\|1614509_1615829_+\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_LT906480.1\|WP_024958156.1\|1611345_1612203_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	unknown	unknown	gnl\|CDD\|225509

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_005408679.1\|1603147_1603897_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184516	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase.	5.32395e-177
NZ_LT906480.1\|WP_024958448.1\|1602378_1603053_-\|deoxyribonuclease-V	gnl\|CDD\|236937	PRK11617, PRK11617, deoxyribonuclease V.	3.62529e-126
NZ_LT906480.1\|WP_038646471.1\|1595655_1597071_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.5043e-60
NZ_LT906480.1\|WP_005412695.1\|1607090_1610555_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_LT906480.1\|WP_004150340.1\|1610704_1611250_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.47008e-07
NZ_LT906480.1\|WP_038645763.1\|1606428_1607046_-\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	2.52588e-55
NZ_LT906480.1\|WP_038645752.1\|1597357_1599607_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|237410	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor.	0
NZ_LT906480.1\|WP_005408684.1\|1612238_1612964_+\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	2.56759e-128
NZ_LT906480.1\|WP_038645746.1\|1592613_1593741_-\|metallophosphoesterase	gnl\|CDD\|277368	cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.89428e-55
NZ_LT906480.1\|WP_038646467.1\|1594342_1595560_+\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.9134e-53
NZ_LT906480.1\|WP_038645760.1\|1604058_1606152_+\|M13-family-metallopeptidase	gnl\|CDD\|341056	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I. The M13 family of metallopeptidases includes neprilysin (neutral endopeptidase, NEP, enkephalinase, CD10, CALLA, EC 3.4.24.11), endothelin-converting enzyme I (ECE-1, EC 3.4.24.71), erythrocyte surface antigen KELL (ECE-3), phosphate-regulating gene on the X chromosome (PHEX), soluble secreted endopeptidase (SEP), and damage-induced neuronal endopeptidase (DINE)/X-converting enzyme (XCE). Proteins in this family fulfill a broad range of physiological roles due to the greater variation in the active site's S2' subsite allowing substrate specificity. NEP is expressed in a variety of tissues including kidney and brain, and is involved in many physiological and pathological processes, including blood pressure and inflammatory response. It degrades a wide array of substrates such as substance P, enkephalins, cholecystokinin, neurotensin and somatostatin. It is an important enzyme in the regulation of amyloid-beta (Abeta) protein that forms amyloid plaques that are associated with Alzeimers disease (AD). ECE-1 catalyzes the final rate-limiting step in the biosynthesis of endothelins via post-translational conversion of the biologically inactive big endothelins. Like NEP, it also hydrolyzes bradykinin, substance P, neurotensin, and Abeta. Endothelin-1 overproduction has been implicated in various diseases including stroke, asthma, hypertension, and cardiac and renal failure. Kell is a homolog of NEP and constitutes a major antigen on human erythrocytes; it preferentially cleaves big endothelin-3 to produce bioactive endothelin-3, but is also known to cleave substance P and neurokinin A. PHEX forms a complex interaction with fibroblast growth factor 23 (FGF23) and matrix extracellular phosphoglycoprotein, causing bone mineralization. A loss-of-function mutation in PHEX disrupts this interaction leading to hypophosphatemic rickets; X-linked hypophosphatemic (XLH) rickets is the most common form of metabolic rickets. ECEL1 is a brain metalloprotease which plays a critical role in the nervous regulation of the respiratory system, while DINE is abundantly expressed in the hypothalamus and its expression responds to nerve injury. A majority of these M13 proteases are prime therapeutic targets for selective inhibition.	0
NZ_LT906480.1\|WP_032964382.1\|1616419_1617997_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349937	cd08015, M28_like, M28 Zn-peptidase-like; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	2.39213e-117
NZ_LT906480.1\|WP_024958160.1\|1618150_1619554_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_LT906480.1\|WP_038645755.1\|1600800_1601781_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	2.16853e-114
NZ_LT906480.1\|WP_024958158.1\|1612967_1614428_+\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_LT906480.1\|WP_038645749.1\|1593814_1594264_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	2.46291e-29
NZ_LT906480.1\|WP_005408686.1\|1614509_1615829_+\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
NZ_LT906480.1\|WP_024958156.1\|1611345_1612203_-\|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ	gnl\|CDD\|225509	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only].	5.0078e-128

>NZ_LT906480.1|WP_038645760.1|1604058_1606152_+|M13-family-metallopeptidase
MNVRNLVPLGLTIAIAASLAACGKNETAPAAGADAKPAFDLSQIKTPLISLNSADLDPAISACTDLNGFVNSKWLKANPVPGDQTTWGSFEILRERSLEVQHALVQQAAASQAKAGSVEAKIGDIWKTGNDEAKIEAAGLAPLQPQLDKITALNDTAAITQYLRDSQAEGKGVLFSLFANADYKDSANVIAYVGQGGLGLPEKGYYFDDAQAKIRDAYVAYIAQVLTLSGVDAAQAAEQAKAVMAFETRLAKASMSRIEMRDPAKRYNPLSAADADKLTPNFSWTALFDTLKVPAAQKFSLAQPGFFGEMDKMLADVPASTWQAYLRFHTIDDASPYLSSQFEKANFEFYGKTLRGQQEMQPRWKRVLESVNGGMGEALGQLYVDAVFPAESKVAMQHLVENLSQALKARLEQLPWMGEETKKKALEKWASFTPKIGYPDKWREWTGLQTNGDSYLGNMQAARAFNYRYMLDKIGKPVDKTEWGMTPQTVNAYYNATKNEIVFPAAILQAPFFDAKADPALNYGGIGAVIGHEMMHGYDDSGSQFAANGNFDNWWTDADRKAFTERTDQLVAQFDGYESVPGVFVKGKLTLGENIGDLGGLTVAYDALQMALKEDPKANVEVDGHSQDQRFFMNWATVWRRNFTDGELRVRLNTDPHAPANFRANGAPSNMPSYAAAFQCKTGDAMVRADDKRVVIW
>NZ_LT906480.1|WP_005408679.1|1603147_1603897_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MTRKLVLLRHGQSQWNLDNRFTGWVDVDLTEQGRREAAAAGRLMREEGLQFDVAHTSVLKRAIHTLQGALAELEQDWLPVNKSWRLNERHYGGLQGLDKAETAAKHGEEQVKVWRRSYDIPPPPMELEDPGHPIHDRRYAGLDRNALPGTESLATTLDRVLPYWHDAIAPQLKDGKTVLVTAHGNSLRALYKYLNNVSREEILELNIPTGIPLLFELNDDLTVQSFRYLGDPEAARKAAEAVANQGKAK
>NZ_LT906480.1|WP_024958448.1|1602378_1603053_-|deoxyribonuclease-V
MNTVIDPGRWEGSVTAARAQQTQLASRVERQDRLPNDVRWLAGLDVGFEDNGATTRAAAVLLDAKTLQPVAQEIARIPTVMPYIPGLLSFRELPALLAALALLPRTPELVFVDGHGISHPRRLGVAAHLGVVTDLPSIGVAKSKLVGRFVEPGAEAGAHTPLMDGDEQLGWVLRSKVRCKPLFVAGGHRVSADTALAWVQRTLHGYRLPEPTRLADRLASRRDE
>NZ_LT906480.1|WP_038645755.1|1600800_1601781_+|cation-transporter
MGHDHDHLPSEIRHEKPLWWALGLTSTFLVVEVVGAFWTNSLALLSDAAHMATDALALMIALVAVRLSRRPPDARRTYGYARLEALGAMINGAMLFVVAGYILWEAVGRFSKPQEIASTGMLVIASAGLVINLISMRLLQAGSGESLNVKGAYLEVWADMLGSVAVIAGAVLIQFTGWKPIDAILAVLIGLWVLPRTWVLMREAINVLLEGVPKGMDVAKVRDSLSSHAAVMDVHDLHVWALASSTPALTAHVVTRDGTDADALRRELSGRLHDDFGIEHVTLQLEADHCGEACGEPAPVKGGEHEGHEGHDHDEDAQGHRGHVHR
>NZ_LT906480.1|WP_005408676.1|1599652_1600579_-|hypothetical-protein
MWTTKTPWVAVAVACALGTAASASAKTCQQNFQAVGDPRNGQFFTSEVTLPGLKPRSALGQLRKAALDEGNNFVSGDVITETEGQMYVLQTDTKMPLVSIITASNGGNVVVGTKLSRGQTAKEEDARSALCGWLDKLKTGPEGEAIAEAVRVSSGFDKPIQATAVGMSTEMGKDAKRLQREINTAPLRALFSGTSTPPDTDAMYQPLLVKYFGRRFIIDGQVYTAQPNRFAKTFEVGYLVTKMKGIGGIGGRQSNDDNNANFTVHCALAPDQMALGATLRENDWVKLEGVVDKMDTGGVHLRDCRQVK
>NZ_LT906480.1|WP_038645752.1|1597357_1599607_+|TonB-dependent-siderophore-receptor
MSPAVVLSPRPLALAVAVLLAGSALTAQAETDATDIDTVHVTASQIARQALGTSTITAEDIARRPPANDIAELLRTMPGVNLTGNSASGQYGNNRQIDLRGMGPENTLILVDGKRIGARDAVRMGRSGERNTRGDTNWVPAEMIERIEVLRGPAAARYGSGASGGVVNIITKRPTGDLTGAVDLYGLVPEHSAEGGSERVGLQLSGPMTDTLSFRLYGNLNKTDADSLELNRQYATNPNAVPPAGREGVKNRDINALLRWDVTANQVVEFEAGTSRQGNIYAGDRAVSTTGTSTGVDLAALAEGEAETNRMYRNTGAITHRGRWGDVTSRVTAAVEAVNNSRINEGLAGGPEGSFNGTDWSTSRLRNYQLDGEVSFPTTLGGAENIWTLGFEYLDSRLTDPYSMSQSSSSGGGIPGLSADRARGKADAQTTAVFVEDNIYLGERWIVTPGLRFDHHSQFGNNTSPSLNAQFRINGDWVVKGGIARAFKAPNLYQSNPDYLYYTRGNGCPNALPSLGAGCYMRGNADLKAETSLNKELGIEWAPQSGWQASLTYFHNDYKDKIQAGYTQIGLTADTRGRIFRWENAPKAIVQGLEGNLVIPLLGEQGNRLKWSNNFTYMVENENKRTGQPLSVIPKYTVNTMLDWQATDKLSLLLTGTFYGKQKPATTNINNDPRCTGTCDPSIALQDRGAYNIWGVSARYRVTETVSFGFGVNNLADKRLFREANSSDAGAATYNEPGRAYWASLRFGF
>NZ_LT906480.1|WP_038646471.1|1595655_1597071_-|GGDEF-domain-containing-protein
MEPPQLDDASQPLAEAWQHCLLQAGPAATALLKAAATDAPPALAQRFYEVLLQDGRARRFLSHDQVKQRLQPAMQRWLVQLLTTDASGIATTVASQRVIGDVHARVGIPVDLVTRGARVLKHELFVRLRDDAPDSATAFAAIDCLSAIMDIAMEGMTLAYTHARDRSTRADAAYRLFSLVQNVGTERERQRALLLDWENALLYALAGHVQASDNASLATSEFGLWFTHKGIPSFGESSETQQVGQLMARIDGHLQRASGDAPAQRLAVLPAIREDLAAIRTLMTLLFERIGELDAGSDALTNLLNRRFLPTVLRREIELATRNRTPFSLLLLDLDHFKAINDGHGHDAGDRALQHVAGLLGQLTRGSDYLFRYGGEEFVVVLVAASESQATVIAESLRRQIAQSPVALANGQVLELTASIGVAGHDGHPDYERLMARADAAMYEAKRSGRNRVVVASEALQEAPGRRALQR
>NZ_LT906480.1|WP_038646467.1|1594342_1595560_+|MFS-transporter
MSAISLPRPLLVLLAAAAGASVANVYYAQPLLDQLARAFAMDRAVAGAVLAATQAGSVLALLGLLPLADRGDRRRLLRLQLIALVLALLWLAASRTASWLLSGMLLAGLLGTALTQGLIAYTAMLAPPEQRGRVVGVVQGGVFIGLLLARVVSGTVAAAFGWQRVYLLSAVVMAALAALLWRRLPAVPVPSVPPRWRELLGSMQGMLRRDRTLRERGPLALLLFAGLNVFWAAAPLPLSAPPLHWSTAAIGALGLAGVVGALMAARVGHWMDRGFAHRVSLGALLLLLVAWWPLLGLPQSLSLLLLGVVVLDLGGQALHVSNQALLLRAPAEQHGRLVALYMLFYALGSGAGAAAGPWMQVRHGWPAVCLLGAGIALLALLWWAAWRVGAVKAAAGRRIDRAGCR
>NZ_LT906480.1|WP_038645749.1|1593814_1594264_-|helix-turn-helix-transcriptional-regulator
MHADSPCPVARSADLLGDRWALLVIRDAFDGITRFGDFQRSLGAARNILSDRLRRLVEAGILQLQPASDGSAYQEYVLTAAGLELFPLLVALRQWGERHRFGAGEAHSQLIELATRRPLPYMQPRGRDSQPLQPTATRVRKLRDDERDT
>NZ_LT906480.1|WP_038645746.1|1592613_1593741_-|metallophosphoesterase
MSRYRPSLLTALLLPLLACATATTQAREVAAPADHVQADGPYVFRQGNQLQAKWICDNKVESHTLATQAAGTDIAPRCGYEHSMHVAAPNAPSVSVLPAVPRIVALSDIHGQYGLLVRLLRAHQVIDAQDRWALGKDTLVIAGDVFDRGPQVTEAFWLLYGLQQQAAAAGGAVHFVLGNHETMVLYDDLRYVNPKYLRSAQLLGRSYPQLYGADSVIGQWLRTRPVLLKIGDTLFLHGGISPEAVQLALDPARTNAAYQASLGLPKAEVKADPATAPLYDGKTSPIWYRGYFDGRLDTAGVQAVLDRLQLKRIVVGHTSMPHVSSFHGDRVIAIDSSIKNGENGELLFIEGGKLSRGLLDGSRVPLALGEPGLQD
>NZ_LT906480.1|WP_038645763.1|1606428_1607046_-|HD-domain-containing-protein
MTMFPDAVPAPDLLHAQACLIDALSMSLQMRDAYTRHHCDRVGLLAQRLATHCDLDDEASAQIGLAARFHDIGKIGIPDEVLLAPRRHTDEERAIMREHPVRGEHIFLATGRSDAAPVARLIRAHHEAFDGSGYPDGLRGESIPLGSRIVTVADAYDAMTSVRPYRAAMERETALRIIEEQSGGLIDPYVLQRFHRMLAREPELA
>NZ_LT906480.1|WP_005412695.1|1607090_1610555_-|transcription-repair-coupling-factor
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEADLQTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPALKRGLVIVPVQTLLQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFPMGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLATLRERFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPDGSLPVVCTGAYEASVAFWAQTADRYEQRRHDVERPLLPPSALYLSPELLRERLNDAPRIEVWSADHARIADAHALGDQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVADLPSFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIRDLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRYSGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEPFAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHRLLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSELVPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHRAYAYLITPDRRAITPDAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPALIPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKANALGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDRFNAARALLTTLAPG
>NZ_LT906480.1|WP_004150340.1|1610704_1611250_-|N-acetyltransferase
MATRNRMPPWHEIFKAPSGHELLIRPIRPEDGAPLQAAFSLFGPEEIRDRFLQAVTELSPETTQRLTHPNPKTEITLVAAESLPAGEAVVGAVARASIIPGTREAEYAILISRFLIGQGLGRQLMRKLVKWGRGKYLDRLYGDVAAENEPMKQLAASLGFKPVPHPTGAEGLVRMVLELDN
>NZ_LT906480.1|WP_024958156.1|1611345_1612203_-|23S-rRNA-(adenine(2030)-N(6))-methyltransferase-RlmJ
MNYRHAFHAGNHADVLKHIVQLALIDSFKRKDSPFFVLDTHGGAGRYLLASEESRKTLEAESGIMRLMAQPKLPEVVERYLKAVQADNPVGALTNYPGSPLLSAQAMRAQDRMAVCELQEAETATLKALFAHDSRVDVRAGDGYALLRSLLPPKFNGSKIGRGLVLIDPPYEAQDAEYQAVLAALAETLARWPQATCAVWFPIKQRRTILHFLRKATALPVKSAMTIEFLVRPDDSPLRLNGSGMLLLNPPWQFDRVVGPALPALRQHLGEPGASTRLDWLKAPE
>NZ_LT906480.1|WP_005408684.1|1612238_1612964_+|two-component-system-response-regulator-CreB
MLRAMTAPVAHVLVVEDEAAIAETVLYALRSEGYAASHCLLGGEALQRLQAGDIDVVVLDVGLPDLGGFEVCRRLRAQPGPAAQLPVIFLTARNDEVDRVLGLELGADDYMTKPFSPRELVARVRARLRRAAPVIAAPSADAGWQEHGAFAIDREGRRIRFRGQALDLTRYEYALLEALLQRPGAILSRAQLMDRGWDSSADSADRTVDTHVKTLRAKLRAAGASDDPIRTHRGLGYALEV
>NZ_LT906480.1|WP_024958158.1|1612967_1614428_+|two-component-system-sensor-histidine-kinase-CreC
MRLVLKLFLGFFLITGIAAFFVMRVFVNEVKPGVRQAMESTLVDAANVLAEMAAADVKDGTIGSGSFTRNLAKARQRDLKAMVWRFPKRSLDYRVTITDAKGIVIYDSLGRDLGRDNSRWNDVYRTLRGEYGARSSPEIPGEEGDTVMHVAAPVYDPADGRTLIGVLSLAQPNRSIDPFIAASQRAIIERGAWLIGLSALVGVLVTMWLTTGLGQLSRYARAVSAGEPVPPPRRRRDEIGDLGQALETMRRKLEGKAYVEQYVQSLTHEMKSPLAAIRGAAELLQEPLPEADRVHFARSIVDQQERLTETIDKLLALAEVEQHGWLQTRDPIALPALLADAAAAAQVRAQAAGVRVHIGNVPDLRVQGDGYLLRQALHNLIDNAIAFSPSGAEIALQAEVDGKGVRLQVADRGAGIPDYARERVFERFYSLARPGSGRRSSGLGLPFVQEVARLHDGRASVDVREGGGTVASLWLPLGAPGQRPRR
>NZ_LT906480.1|WP_005408686.1|1614509_1615829_+|cell-envelope-integrity-protein-CreD
MKSLKMLLRFAIVGGLILLLLVPLTMIRGVINERSAYRDEAFSRVADSRAGAQQLVGPVRVVPWVERKQVELVDPLGVKKTEIQVTEGHWLQMPASLEVGGEMLPSQREVGLFKVPVYSWNGQMKATFAADDYPVKAGRSYGQPYVAVGVSDVRGLVGTPNLRVDGKQLRLLPGVGAASEVGRGLHAPVAGFAADQGGTLAASTVELELRLDGSRMLSVVPLGDDTHIALRSSWPHPSFSGAFLPNERRVDAQGFDARWAVSSLASDAQRQLRNDGAVESQAVTVSLVDPVDTYTQADRASKYGVLFVLLTFVGFILFELIKSLRIHPLQYLMVGLALAIFFLLLISLSEHIAFWKAYLVSAVACIGLQAVYLANVLGHWKRGLGFAALLTVLYGALYGLLVSENNALLMGSLLLFVILALAMWVTRRVDWYALGAELK
>NZ_LT906480.1|WP_012479575.1|1615839_1616250_+|hypothetical-protein
MGWRQGLRQRARQGIPALLEVDALLQAHGVLAALPGARIAPGLVRFQLAAVTCEGLQGQGLRWLQGARQGRGAVAGRVPRYRPWKAGAEALAEIGIGGLPDDWPAHAAVYGCSSIDRRHWLLLLPERAQLWLGWSG
>NZ_LT906480.1|WP_032964382.1|1616419_1617997_+|M20/M25/M40-family-metallo-hydrolase
MLAAALAMGGNAGAQQRETVDLDMVSRIRQEAFHRSQVMDTFSYLTERIGPRLTNSPAMGRANAWTRGKFNEWKLDNVHDEAFDDFGRGWEFTSASVEMLGDRVQPLHALPKAWTPGTKGPVEGELVQVEIKKPEDIEKYRGKLRGKILLLDEAREYKRGTEADSHRHDATSLEGLQEFTLPKDKDATAERAKRVKEYQERQQLATKVNAFFVEEGALASISISSWDNGIIRVAGGGSRKAGESVGIPELAMISEHFNPLVRALEAKQTVRLRVDVAARFTDEADQPGYNTLAEIRGSSKPDEVVMIGAHLDSWHSGTGAADNAAGVAVMMEAMRILKATGAKPRRTIRVALWSGEEQGLIGSQAYVAKHFGRFPEPTDPAQKALPASLREPTGALQKTRDYGKFQVYFNMDNGSGRFRGIYAQENLAAMPIFEAWLAPFHDVGATTVATRNTGSTDHISFDRIGLPGFQFIQDRLDYFTNVHHSHLDTWDHAEPEDLKQAAAIVASFAYNAAMREQPFPRKVEP
>NZ_LT906480.1|WP_024958160.1|1618150_1619554_+|glutamate--tRNA-ligase
MTCRTRFAPSPTGYLHIGGARTALYCWLEARHRGGEFVLRIEDTDRERSTQGAIDAILEAMEWLGLDYDEGPIYQTDRVARYLEVAEQLVADGKAYYAYETREELDAMREAAMARQEKPRYNGAARDLGLPRRDDPNRVIRFKNPLEGTVVFDDLIKGRIEIANSELDDMVIFRPDGYPTYNFAVVVDDWDMGITEVIRGDDHINNTPRQINLYEGIGAPVPKFGHMPMILDEQGAKLSKRTGAADVMQYKDAGYLPDALLSYLARLGWSHGDQELFSRQELIDLFDVKDCNSKASRLDMAKLGWVNQHFLKTEDVSAIVPHLVYQLQKLGLDVAAGPAPEDVVIALRERVQTLKEMAEKAVVWYQPLTEYDEAAVAKHFKAGAEVALGKARELLAALPEWTAESVGVALHEAAAALEIGMGKVAQPLRVAITGTQVSPDISHTVYLAGREQALKRIDVAITKVATA

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Crispr_ID: NZ_LT906480_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_6

1996307-1996453

Orphan

Consensus_repeat	Method
TGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LT906480_6

>merge|NZ_LT906480|6|1996307-1996453|CRISPRCasFinder
TGCCGGCCGCTGGCCGGCAACCTCATGAACGATTGAAGCATCACCTGGATGCCGGCCAGCGGCCGGCACTACCGGAGCGGATGGGTTGCCGGCCAGCGGCCGGCACTACCAGAGCGGACGGGTTGGCGGCCAGCGGCCGGCACTACC

>NZ_LT906480|6|6|1996307-1996453|CRISPRCasFinder
TGCCGGCCGCTGGCCGGCAACCTC	ATGAACGATTGAAGCATCACCTGGA
TGCCGGCCAGCGGCCGGCACTACC	GGAGCGGATGGGTTGCCGGCCAGCGGCCGGCACTACCAGAGCGGACGGGT
TGGCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_024958625.1\|2002368_2004285_-\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_LT906480.1\|WP_005409058.1\|1992100_1992916_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_LT906480.1\|WP_024958623.1\|2005062_2006070_-\|glucokinase	unknown	unknown	gnl\|CDD\|234716
NZ_LT906480.1\|WP_005409057.1\|1991580_1992066_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_LT906480.1\|WP_005409059.1\|1992912_1993752_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_LT906480.1\|WP_024958627.1\|1993818_1994316_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024958629.1\|1988396_1989821_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_LT906480.1\|WP_024958628.1\|1990197_1991577_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939
NZ_LT906480.1\|WP_005409068.1\|2001502_2002162_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_LT906480.1\|WP_024958626.1\|1994780_1996295_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_LT906480.1\|WP_005412965.1\|1997030_1998257_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LT906480.1\|WP_005409066.1\|1999617_2000367_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239486
NZ_LT906480.1\|WP_005409063.1\|1996470_1997034_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226933
NZ_LT906480.1\|WP_005409061.1\|1994403_1994784_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_LT906480.1\|WP_005409065.1\|1998371_1999637_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_LT906480.1\|WP_005409053.1\|1987159_1987675_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225854
NZ_LT906480.1\|WP_024958624.1\|2004343_2005066_-\|6-phosphogluconolactonase	unknown	unknown	gnl\|CDD\|238694
NZ_LT906480.1\|WP_010484333.1\|2006066_2007503_-\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_LT906480.1\|WP_005409054.1\|1987880_1988204_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_LT906480.1\|WP_005409067.1\|2000567_2001215_+\|response-regulator	unknown	unknown	gnl\|CDD\|236538

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024958625.1\|2002368_2004285_-\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_LT906480.1\|WP_005409058.1\|1992100_1992916_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	1.9505e-146
NZ_LT906480.1\|WP_024958623.1\|2005062_2006070_-\|glucokinase	gnl\|CDD\|234716	PRK00292, glk, glucokinase; Provisional.	1.22686e-164
NZ_LT906480.1\|WP_005409057.1\|1991580_1992066_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	1.12892e-66
NZ_LT906480.1\|WP_005409059.1\|1992912_1993752_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	1.34339e-150
NZ_LT906480.1\|WP_024958629.1\|1988396_1989821_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.49812e-156
NZ_LT906480.1\|WP_024958628.1\|1990197_1991577_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	1.91677e-170
NZ_LT906480.1\|WP_005409068.1\|2001502_2002162_-\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	3.36614e-99
NZ_LT906480.1\|WP_024958626.1\|1994780_1996295_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_LT906480.1\|WP_005412965.1\|1997030_1998257_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.58462e-18
NZ_LT906480.1\|WP_005409066.1\|1999617_2000367_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.24648e-51
NZ_LT906480.1\|WP_005409063.1\|1996470_1997034_-\|response-regulator-transcription-factor	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	4.22903e-77
NZ_LT906480.1\|WP_005409061.1\|1994403_1994784_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	9.63919e-73
NZ_LT906480.1\|WP_005409065.1\|1998371_1999637_+\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_LT906480.1\|WP_005409053.1\|1987159_1987675_+\|hypothetical-protein	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	0.00178994
NZ_LT906480.1\|WP_024958624.1\|2004343_2005066_-\|6-phosphogluconolactonase	gnl\|CDD\|238694	cd01400, 6PGL, 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.	1.13382e-54
NZ_LT906480.1\|WP_010484333.1\|2006066_2007503_-\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_LT906480.1\|WP_005409054.1\|1987880_1988204_-\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	7.04517e-20
NZ_LT906480.1\|WP_005409067.1\|2000567_2001215_+\|response-regulator	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	5.75562e-72

>NZ_LT906480.1|WP_024958626.1|1994780_1996295_+|glucose-6-phosphate-isomerase
MTTNNGFDSLHSHAQRLKGASIPGLLAAEPGRVQDLALRVGPLYVNFARQKYDAAALQALLALAADRDVGGAITRLFRGEQVNLTEGRAALHTALRGDVVDAPVAAEAYATAREIRQRMGVLVRALEDSGVTDVVSVGIGGSDLGPRLVADALRPVSGARLRVHFVSNVDGAAMQRTLATLDPAKTAGILISKTFGTQETLLNGQILHDWLGGSDRLYAVSANPERAAKAFAIAADRVLPMWDWVGGRYSLWSAVGFPIALAIGFERFEQLLEGAAQMDAHALDAPLERNLPVLHGLTDIWNRNLLGHATHAVMTYDQRLALLPAYLQQLVMESLGKRVQRDGQPVTTDTVPVWWGGAGTDVQHSFFQALHQGTSIVPADFIGCVHNDDPYTINHQALLANLLAQTEALANGQGSDDPHRDYPGGRPSTLILLDALTPQALGALIAMYEHAVYVQSVIWNINAFDQFGVELGKQLASGLLPALQGEDVAVADPMTREILAQLKR
>NZ_LT906480.1|WP_005409061.1|1994403_1994784_+|aspartate-1-decarboxylase
MHLSLLKTKIHRATVTHSELNYEGSIAIDDNLLAATGIREFEQVHIWDVTNGARFSTYAIRAEAGSGVVSLNGGAARHVQVGDIIIIAAFASMTEQEADSFKPKLVYVDGKNQITHTNDTIPTQAA
>NZ_LT906480.1|WP_024958627.1|1993818_1994316_+|hypothetical-protein
MKTPSTDAGRLAQALILAVLAAGMLPAQLFGGLLFALEFRRTPMPALTGGGLMFGLGVCVAIAMFLPMALLPRSRRLLRRTRFVLAGAALGALAVAIHEWPGAIHGPLLQRLRYVDTFDVISYGLTVLAAGGLGLASGLAFHTVFRLSLQGGALHATAPPPGEGA
>NZ_LT906480.1|WP_005409059.1|1992912_1993752_+|pantoate--beta-alanine-ligase
MIQTFNELGALRGQIAQWKREGLRVALVPTMGNLHGGHHSLVTLARQYADKVVASIFVNPTQFGPNEDFSRYPRTPEADVAGLEQVGCDAVWLPSVEAMYPLGVDKTTQMHAPGVSEVLEGASRPGHFDGVCTVVARLFLQVQPDVAVFGRKDYQQLAVIRQMVAELSFPIQIVGADIVRDEDGLAKSSRNQYLSAEQRPVATTIHRTLLGMREGYVAGQARDRIEADATAALQAAGFQVDYAVLRTPELAEPTFDGGGRVALIAARLGSTRLIDNLEF
>NZ_LT906480.1|WP_005409058.1|1992100_1992916_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSTHADSKPWTVPALAEAKRNGQKLVMLTAYDAGFARTFDANGVDLILIGDSLGMVVQGHDSTLPVTVADMVYHTRAVARVLQRALLVADLPFGADATPERALDASLQLLQAGAEMVKIEGAGFKVDIIRYLVEREIPVCAHLGLTPQSVLRLGGFKIQGRGDAARQLVEDARAVAAAGASIMVLECVPTPVAAEVTAAVEVPTIGIGAGPQCDGQVLVLHDFLGLDSGHRRPKFVKDFLAEGGSVAGATRAYADAVRDGSFPDEQHAYAS
>NZ_LT906480.1|WP_005409057.1|1991580_1992066_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MMPAWIGLGANLGDAATTVGAAITALDGLPGTRVLQASRLYATPAWGNEDQPPFVNAVAAVETSLAADELLQAMLALEQRFGRVRDPAVHWGPRALDLDLLLYGAQVLDQPGLQVPHPYMHERAFVLVPLAEIAPDLAIPGHGRVRDAVMRVDACGIAPIG
>NZ_LT906480.1|WP_024958628.1|1990197_1991577_+|polynucleotide-adenylyltransferase-PcnB
MGNPETSTGSANIISSATSPFSLRVIPRDQHTISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAVRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPQLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPESARALKSNRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAFCRAQATLLKQGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFSSRQRKRVFRTLTHPRFRAAFDFLSLRQVASAEHAADVEFWREAQAQSGRELESSLDAMHSEEGDDENGAPLKRRRRRRRPGASAGAAGE
>NZ_LT906480.1|WP_024958629.1|1988396_1989821_+|sugar-porter-family-MFS-transporter
MSPAQPSIALHGGENTAFIVLISCVATLGGFLFGFDSGVINGTVDGLRQAFNSSEAALGFEVASMLLGCAIGAFLAGWLGDRLGRRGVLIVSALMFLVSALGAGAAHASWLFIAARVLGGFAVGAASVMSPAYIAEVASARYRGRLATVQQMAIICGLFAAFLSNYLLARAAGASTEPLWLGHEAWRWMFWMQALPSGLFLLLLLVIPESPRFLVLKGRQQQARAVLARLYGEAAAAAKQAEIETSLAQDQHKPRFSDLRDTVSRKLRPILWVGIGLAMFQQLVGINVVFYYGAVLWQAVGFSESDALLINVLSGGLSIGACLLTVLLIDRIGRKPLLWIGSVGMSVALVLMVVAFASGSLPDGRLQLSDGMGRLALVAANVYVVFFNMSWGPVMWVMLGEMFPNQIRGPALAVAGAAQWTSNFAITVTFPMLLAGIGLAGAYGIYTVAAILSIVFVVRYVRETKGKELEQMEG
>NZ_LT906480.1|WP_005409054.1|1987880_1988204_-|ferredoxin-family-protein
MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDDVPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLLER
>NZ_LT906480.1|WP_005409053.1|1987159_1987675_+|hypothetical-protein
MRQSVSTVRVLSYALLAVAVAAGTTGCFKRGVKGDYALAPEMRPLEVPPDLNLPATTGDNKVPALVSATKPAAPAAAAPAVGNTGFTIAGGKDEAFAKVGTALEGVEGVTIASRAQLLGSYDVAYEGSNFLVRVVAVDAGAYISAVDPRGLPATAEAPVKLIAALKAKLAQ
>NZ_LT906480.1|WP_005409063.1|1996470_1997034_-|response-regulator-transcription-factor
MSASTLGLLVDDDELYLRTLQRSLARKGLETQTAQDAASALALARQHPPAFALIDLKLGSDSGLALIQPLRALRADMRILLVTGYASIATAVEAIKLGADDYLPKPATVPMILRALGEEDDGPADDGEMEVPDAMTPISRLQWEHIQQAMHETGGNVSAAARLLGMHRRSLQRKLAKRPSPERDPSR
>NZ_LT906480.1|WP_005412965.1|1997030_1998257_-|HAMP-domain-containing-histidine-kinase
MTGPDAPFLRTLCSLRWLAVGGQAATILVATWVLGLPLPQLPLWAGVAVLALFNIYTQLRPEAADTAPLTAFGHILVDVIILTWMVGWSGGMANPFSSLFLILIALAAFALPLRWALAVALACLLGYAASGIFGQPLPDGYFRAQDLNRWGVVANFLISAAVVLAFSTRLALALRQRELELSALRERFARNEGIVALATHAASVAHELNTPLATMTLLADDVAERSEEPEVREDMETLRELLVQCRERVLALAAPASADAPGRSHSSAQQVLEQWRLVRPTIDLHRNDDAPLRLPLDPGVGHLLMVLLNNAADAGEQAGRPRVDLDLRIEGDDLIGEVRDYGHGFNARAAVLPGKLFGSSKSEGMGVGLALSHATIERLDGEMWMRPAQGAGSRVGFRLPLAPREETP
>NZ_LT906480.1|WP_005409065.1|1998371_1999637_+|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MHDAVTRPTPPSDATAWPRRQTHAVQIGGVTVGGGKPVVVQSMTNTDTSDVASSVKQVAELWRAGSEMVRLTVNTVEAAAAIPRIVDKLAMMGIDVPLIGDFHYNGHQLLTAEPACAEALAKYRINPGNVGFGKKKDLQFAQLIEFAIRYNKPVRIGANWGSLDQALAAKLMDENNLREQPWDAGRVLREALIRSALDSAEQAVELGLPRDRIVLSAKVSGVQELIAVYRDLAQRSDFALHLGLTEAGIGSKGIVASSAALGVLLQEGIGDTIRISLTPEPGQSRTQEVIVAQELLQTTGQRAFTPLVTACPGCGRTTSEFFQELAKVVQNHVREKMPLWKIHHPGAENMTLAVMGCIVNGPGESRHANIGISLPGTGETPAAPVFVDGEKKVTLRGDNIAQEFVALIDDYVEHTYVRSAG
>NZ_LT906480.1|WP_005409066.1|1999617_2000367_+|phosphatase-PAP2-family-protein
MSEAPDKPAILAAPESASGFRHWMARNAWRLVLLFGGVLLPLAGFVALADEVHEFESFHFDAPLLWQMHGLHSPWLDRFFVLISKLGYEWFLIPADVLIIGVLLGYRRWREATFVAVSFVGSALLNMGSKQFFQRQRPSLWESIAPESTFSFPSGHAMGSMTLAVTLVLLAWNTRWRWPVLMLAPAFSLLVSVSRVYLGVHYPSDILAGWCAALVWVVGCYLVMFSRRHPWRRHGPPPAKASEAPTQGV
>NZ_LT906480.1|WP_005409067.1|2000567_2001215_+|response-regulator
MTIRVYLVDDHALVRTGMKMILSGETDIEVVGEAETGEDALREVRQLLPDVVLCDLHLPGVSGMEVTERIVRSHRNTRVVIVSVLEDGPLPKRLLEAGAAGYIGKGCDAQELLRAVRDVAAGRRYLGTSIAQNLALSTVEGNGSPFDNLSPRELEVALLLTQGLRQEDIARRLSLSAKTVNTHKARLFEKMGIHDNIALARMASQYGLVDPARPL
>NZ_LT906480.1|WP_005409068.1|2001502_2002162_-|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MGIEQHQVKAAELLRAAGILPVVTIHTLDQARAVSAALLEGGLPAIELTLRTPVAMEALAMLKRELPDVVVGAGTVLTVEQMQQSIDAGADFLVTPGTPPALADALAAAPLPVVPGAATPTELLSLYARGFRVCKLFPATAVGGLAMIKGLAGPVADLKLCPTGGITENTAAEYLEQKNVVCIGGSWMVPGNWIANGEWDKVRASAADAAKIIQRVRGH
>NZ_LT906480.1|WP_024958625.1|2002368_2004285_-|phosphogluconate-dehydratase
MSLHPQLQAITERVIRRSAASRAAYLAAIDASLREGPFRSRLSCGNLAHGFAACGGTDKSRLRGGVTPNLGIITAYNDMLSAHQPFETYPEQIRDIARELGATAQVAGGVPAMCDGVTQGRGGMELSLFSRDVIAQATAIGLSHDMFDSTVYLGVCDKIVPGLLIGALAFGHLPAVFVPAGPMTPGIPNKQKAEVRERYAAGEATREELLEAESASYHGAGTCTFYGTANSNQVLLEAMGVQLPGASFVNPGTPLRDALTREATERALDITALGDDFRPLGRIIDERAIINAVIALMATGGSTNHTIHWIAVARAAGIVLTWDDFDELSQLIPLLARVYPNGEADVNRFAAAGGPAFVFGELIKAGLMHGDLVSVARGGMADYAREPQLRDGQLVYLPGLERSADDEVVRGVDNPFEHQGGLRLLRGNLGKSLIKLSAVKPQYRTIEAPAVVVDAPQVLNKLHAGGLLPQDFVAVVRYQGPRANGMPELHSLAPLLGLLQNQGRRVALVTDGRLSGASGKIPAAIHVTPEAARGGPLAKVREGDMIRLDGEAGTLEVLVDAAEWAARPLAPNTAPAAHDLGRNLFAINRRVVGPADQGAISISCGPAAADGGPWEYDAEYELGHDAAAAAAPHEAKDA
>NZ_LT906480.1|WP_024958624.1|2004343_2005066_-|6-phosphogluconolactonase
MSPTFHDDRIEFINHGDADGWIEAVAAEMAQTLNHDINEVGRARILLSGGTTPAPVYQALAELDVHWDRVEVSLADERWLSPQDRDSNAWLVRENLLKRAEGAHFDPLVRIGKPLPECVYTANLQAQHSQPPSLVALGMGNDGHTASLFPGSRDLARALESTLPYAALDATGCPGANQWPLRITLTPHGLRQCRQRLLLLRGKQKLQVLRQALDSNDAQQYPILNAINLEGARLRVHWAD
>NZ_LT906480.1|WP_024958623.1|2005062_2006070_-|glucokinase
MSASSQPVLVADIGGTNARFALADTSQDAPLQKDSIREYAVAEFPSLGDAARHHLEQIGATASRGVFAVAGRVDGDEARITNHPWVISRSRTAAMLGFNELHLINDFAAQAMAISLLQPDDVVQVGGAAWVPGKPGQPRNYAVIGPGTGLGVGGLILRHGRCYPLETEGGHVSFPPGTPEEIRILEILSEQFGRVSNERLICGPGLVNIHRAVCEMAGIDPGQLQPVDVTARALHGDPQAMRTVDVFCAVFGAIAGDLVLTQGAWDGVFLTGGLTPKMLDSLQHSGFRQRFEHKGRFSSIMARVPSLAVMHPHAGLLGAAAYAADAERDVPGVAA
>NZ_LT906480.1|WP_010484333.1|2006066_2007503_-|glucose-6-phosphate-dehydrogenase
MHDTLFLFGATGDLAQRYLFPSLLRLLGDGLLPEDFRIRALALSGHDTEAFHDILRPRLQQAMPMATQDDISALLRRIDYRSVDLRDVDSVAAAVSDLVHRKCVSYLAIPPGLYISTCEGLAKGGALAAPARLMLEKPIGSDSESAEEIISTIGQWIDEDRVFRLDHYLGKAAVQNLIALRFGNTLLEAVWNRNYIESVHILVAESEGVDGRDAYYARSGALRDMVQSHILQLLCMVAMEPPASLEADRIRDEKVKVLRALRPLDAKHAARDSIRGRYTAGTINGQPAQAYQPPEGSDVETFAGVTAHIDNWRWSGVPFHLVTGKRLPERTTRVVVTLKPVTHWLFERPQRAQAAPNRLVFQLQPQENIELGLMSSLAGPEWGALELHPLELELSVPTGLHRRIAYERLFLDAFNGNHTLFVRDDEVRAAWAWIDSVADAWKDAKLPLEPYPAGQWGPSNAGEFLPQGVDAPDSGASA

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Crispr_ID: NZ_LT906480_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_7

2476710-2476816

Orphan

Consensus_repeat	Method
ATCCACGCATGCCGTGGATCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_7

>merge|NZ_LT906480|7|2476710-2476816|CRISPRCasFinder
ATCCACGCATGCCGTGGATCTACCGCAACCCGCTTTGGTGGGGGCCGACCGTTGGCCGGCACGGATGCCTGTGCCTGTCGATCATCCACGCATGGCGTGGATCTACC

>NZ_LT906480|7|7|2476710-2476816|CRISPRCasFinder
ATCCACGCATGCCGTGGATCTACC	GCAACCCGCTTTGGTGGGGGCCGACCGTTGGCCGGCACGGATGCCTGTGCCTGTCGATC
ATCCACGCATGGCGTGGATCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_010485882.1\|2467100_2467439_+\|flagella-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024958574.1\|2467530_2468751_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|340419
NZ_LT906480.1\|WP_024958757.1\|2471675_2473778_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_LT906480.1\|WP_024958756.1\|2473909_2476669_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_LT906480.1\|WP_005413279.1\|2479123_2479738_-\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690
NZ_LT906480.1\|WP_024958572.1\|2464840_2465785_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|381151
NZ_LT906480.1\|WP_024958754.1\|2477455_2477671_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024958571.1\|2464306_2464702_-\|flagellar-basal-body-rod-protein-FlgB	unknown	unknown	gnl\|CDD\|183628
NZ_LT906480.1\|WP_024958753.1\|2477769_2478960_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_LT906480.1\|WP_019337421.1\|2466798_2467104_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	unknown	unknown	gnl\|CDD\|274802
NZ_LT906480.1\|WP_024958573.1\|2466066_2466723_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|183625
NZ_LT906480.1\|WP_038645966.1\|2481919_2482246_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_LT906480.1\|WP_010485892.1\|2463895_2464303_-\|flagellar-basal-body-rod-protein-FlgC	unknown	unknown	gnl\|CDD\|183634
NZ_LT906480.1\|WP_024958750.1\|2485696_2486080_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005409594.1\|2483332_2485618_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_LT906480.1\|WP_005409590.1\|2480873_2481335_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239647
NZ_LT906480.1\|WP_024958751.1\|2482381_2483194_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	unknown	unknown	gnl\|CDD\|226100
NZ_LT906480.1\|WP_005413280.1\|2479734_2480877_-\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_LT906480.1\|WP_024958758.1\|2469898_2471671_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_LT906480.1\|WP_005409591.1\|2481336_2481807_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024958574.1\|2467530_2468751_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|340419	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS. This family includes the histidine kinase-like ATPase (HATPase) domains of various histidine kinases (HKs) of two-component signal transduction systems (TCSs) such as Escherichia coli AtoS, an HK of the AtoS-AtoC TCS. Proteins having this HATPase domain also contain a histidine kinase dimerization and phosphoacceptor domain (HisKA); some have accessory domains such as HAMP or PAS sensor domains or CBS-pair domains.	2.09803e-52
NZ_LT906480.1\|WP_024958757.1\|2471675_2473778_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.41319e-43
NZ_LT906480.1\|WP_024958756.1\|2473909_2476669_+\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.92957e-105
NZ_LT906480.1\|WP_024958572.1\|2464840_2465785_-\|chemotaxis-protein-CheV	gnl\|CDD\|381151	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins. This subfamily includes the REC domains of Bacillus subtilis chemotaxis protein CheV, Myxococcus xanthus gliding motility regulatory protein FrzE, and similar proteins. CheV is a hybrid protein with an N-terminal CheW-like domain and a C-terminal CheY-like REC domain. The CheV pathway is one of three systems employed by B. subtilis for sensory adaptation that contribute to chemotaxis. It is involved in the transmission of sensory signals from chemoreceptors to flagellar motors. Together with CheW, it is involved in the coupling of methyl-accepting chemoreceptors to the central two-component histidine kinase CheA. FrzE is a hybrid sensor histidine kinase/response regulator that is part of the Frz pathway that controls cell reversal frequency to support directional motility during swarming and fruiting body formation. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.24793e-37
NZ_LT906480.1\|WP_005413280.1\|2479734_2480877_-\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_LT906480.1\|WP_024958571.1\|2464306_2464702_-\|flagellar-basal-body-rod-protein-FlgB	gnl\|CDD\|183628	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional.	1.36899e-78
NZ_LT906480.1\|WP_024958753.1\|2477769_2478960_-\|chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	6.23044e-31
NZ_LT906480.1\|WP_019337421.1\|2466798_2467104_+\|flagellar-biosynthesis-anti-sigma-factor-FlgM	gnl\|CDD\|274802	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.	3.49375e-14
NZ_LT906480.1\|WP_005413279.1\|2479123_2479738_-\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	2.48163e-86
NZ_LT906480.1\|WP_038645966.1\|2481919_2482246_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	6.34033e-44
NZ_LT906480.1\|WP_010485892.1\|2463895_2464303_-\|flagellar-basal-body-rod-protein-FlgC	gnl\|CDD\|183634	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional.	6.04545e-81
NZ_LT906480.1\|WP_024958758.1\|2469898_2471671_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	1.69055e-96
NZ_LT906480.1\|WP_005409594.1\|2483332_2485618_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_LT906480.1\|WP_024958751.1\|2482381_2483194_-\|APH(6)-family-putative-aminoglycoside-O-phosphotransferase	gnl\|CDD\|226100	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms].	2.02493e-74
NZ_LT906480.1\|WP_005409590.1\|2480873_2481335_-\|NUDIX-hydrolase	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.7154e-70
NZ_LT906480.1\|WP_024958573.1\|2466066_2466723_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|183625	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA.	7.4224e-107

>NZ_LT906480.1|WP_024958756.1|2473909_2476669_+|EAL-domain-containing-protein
MDQGIIASLLQHPLASALVIVDRTGRPLAANPAAREHGLPATVAAYAPMLEDLRLMAADGGIVACTLPGGPHGHYDGHLRAVHDGAGNLLAFTLSIPEPVPLGGGGRWELALDSAGHSLWDWDIPSDRVVRTPAVGDETATEMLARVHGEDIAQVRAALEEHLRGLSEQYSAQFRFRQADGQWRWVLDRGRVVARTADGQPLRMVGTHTDIEQQKQLEGLLQEQQLHLSEAQRIASMGSWSFDPNSGHFWWSPELRSMLALEQGAVPGQRRWLKQLHPRSRGALRAAWRRLWRDGRAANLELELTRGNEPSQHLRLWMQPLLDMDGQPKRLLGQVQNITEQHQTDALIRWRTELLNRVSALGRIGGCEIEVKTRHMQWTEECYRIHGLRKEPITLDQALALYTEDSRNAFEAALARIANGGLPEQLDLCFYRQSGLRVWVQVLIELDRRDRLPPRFVVLFRDITREREANERIELLAHYDLLTGLPNRVLLGEQTAEAIEEARDRGTSLAMLFIDLDGFKTINDSFGHATGDALLKAAATRLHQNLRNNDLFGRFSGDEFIVVLRDLAEPEDAGHVARKLIASLAEPLRRGETTLKVGASVGIAMLGDAQTDFDSLLRAADAAMYAAKEAGRNTYQYYSQDALARIQRKLELEHALHGAIEREEFSLAYQPLLHAHHGERPAIEALLRWHRPGIGYCSPAEFIPIAEKCGEIVRIGDWVLNEACRQATAWDRAGLRFDRIAVNVSAVQLRDRGFAERVIEICHAHGWPPQRLELELTESALIRDTDILRHCFDVLERHGVPLAVDDFGTGFSNLNYLNRFPVGRLKIDRSFVQGMLHDSGTAEVTQAIVHLGHALGMKVVAEGVETHQEEDMLRRQGCDEIQGYLYSRPLSPRDLAQWLRQPQPVSLRTDASGEVMLMR
>NZ_LT906480.1|WP_024958757.1|2471675_2473778_-|PAS-domain-containing-sensor-histidine-kinase
MPAEPTGTALVPDPRMAQALSRDRRRVVLSYLVMALAWMIASDSAVQALVPDPQQAAMWQSVKGSFFALASAGLLYLLLRPLAEHVLHTHARQQASELRLRQMFEGNPGPILVYDLDTLAILDANPAACTTFGWERDELLEQTIDALWPPGQDQALQTKLEAIREAPEELCILRAQLQLRDGSLRQMELRSNAISYDGHNARLLIAIDRTAEDLAQLRRDQALARVEEAHELARIGAWELDPSTGMGRYSNQVYRLLGRRPPEARRWHRFDELLVPADPATATQTEQLLADLCSGDPVQVDVLLPLLSMDGRALMVHLRAASGVDESGRSRVLGTLQDVTEREQSRRLLREREEQFRELVRVLPDGVVILSDEHVLYTNAWAASLFGYGSHTLLGEPLSALVAAGDLARVRGQLRAGQPHLGPGHSSVVAMQRADGRSFHAGLAVGEVRYGGRDCKLLIVRDLSDSERTRSALETSNRELQAMAGRLFSLQEDERRAISRDLHDDIGQAITAIKLSAHAAQDEHDPQRRAEDLAQIVSLADTTVAKLRDISTLLRPPQLDALGLEAALSWQARVLFRSSQVELLAEIEPLPHRPDNSIEQACFRIAQESLTNVLRHARASQVHLQLRDIGKRSLHLQIRDDGEGFDPDGPRGLGLIVMRERAQSVGGHVRIESAHGEGTLIDVHLPYQAASMAAVESPEY
>NZ_LT906480.1|WP_024958758.1|2469898_2471671_-|EAL-domain-containing-protein
MWNPNQPPVSIDDAPDRLGAGNPELQAMVAEAASGGTALMLMHVDIDHFASVNENMSAEVGDQALVLVAQRLQSYLRGRGKLWRHGSDEFLIAVPRNTDVPLPEDFAEEIRQQMELPLSVLPYTLFMTGKLGVSLCPEHASNASRLLDHAEDALYQAAREGGNAVRIHAVDTPPSAHSESIIARQIVDAIPNGELKLRYQPLVSARDGHVVGMEALLRWQSPTLGMLVPERFMRTAERLGIIVQIGTWVLEGALMQARLWRDQGFDDFTIAVNVSTLQLLRPNFFAEVMGLIQAAGVPAQMLTLEINESALTNNVNFVHETLANLRNEGISLSLDNFGTGDSSLSALVRYPVDKLKIDRSFIKSAPAGNREAAIARAIIAMGHQLGMTVIANGVESQAQLGFLRRNDCDVFQGYLFGEPMSADAAGMTLRRRYLRPEAFAETRPDRTLLLLDDEENVLRSLVRLFRRDGYRILAAGNVRDAFDLLAINDVQVILSDQRMSDMSGTEFLGRVKMLYPDTIRLVLSGYTDLNTVTDAINRGAIYRFLTKPWNDDELRKHIHQAFRTYEEQRRSNAGPAPAESGDGGEDRPLR
>NZ_LT906480.1|WP_024958574.1|2467530_2468751_+|two-component-sensor-histidine-kinase
MSAANALVTAPLPPQPVLQALLERLREGLLLFTDDGQVALANPAAQNLLASGEGGGLPPPQRLRELLPPDALEQARQHGHWNGSLPLGEGVVIAHLYHHGPVGQGHFLALFRHIEGQEDYERELQQRHAELRQAYLRLNGTQEKLLQSEKMASIGQLAAGVAHEINNPIGYVHSNLGSLQEYLRSLFTVIEAYERALRAPDPKALIPEIDDIRDRLDIDFISRDLPQLMAESREGIERVTRIVRDLKDFSYSGRDESWKLVDLHAGLESTINIIWNELKYKVTLVREFGQLPLVECLPSELNQVYMNLLLNAGHAIAERGTITVRTGVDGDQVWVEFEDTGGGISPELRQRIFDPFFTTKPVGSGTGLGLSISYSIINKHHGRIDLDSTPGVGSRFRVVLPVKQPR
>NZ_LT906480.1|WP_010485882.1|2467100_2467439_+|flagella-protein
MTAAMSEPLQRLAQALDVERQALVEHDVHALIRATGAKLEALRALEGAPPVGEGEQLQELAERNRANGVLLSRRRREVNWALRQLGRTEDASAYDAKGQAHTVTARRPLAVA
>NZ_LT906480.1|WP_019337421.1|2466798_2467104_+|flagellar-biosynthesis-anti-sigma-factor-FlgM
MSQKIDGNLQVPQALRSVTTPANKPGVSTDAAARPVEAADSLRLTGEATNLQAIERELTTAPAIDAQRVAAVRESLQNGTYKINPDAIASRMLELDQQLHG
>NZ_LT906480.1|WP_024958573.1|2466066_2466723_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MRRVTSLLAIALALASPWATAADWQPVASIRTAALSTLPAGSEGEAQVADALRLPKCGGALQVQPTANTTVEVSCPDAGGWRLFVPVKVRRNQTVLVLNRGIGTGETLTAADITTAQRDAARIAGAVLADPNAAIGRIARRPLQAGALLSSNDLVVQRLIKRGDNVALVSRRGSVEVRIAGRAMGDAGENERVSVENLSSRRIVQGTVDAAGDVIVAR
>NZ_LT906480.1|WP_024958572.1|2464840_2465785_-|chemotaxis-protein-CheV
MSHDLLNRIDQRTRLAGHNRLALLLFRLGGRQLFGVNVFKVQEVLRRPELFQVPGLPSQFSGVADVRGRSVPVLDLGLAIGHPEREPEADTSPGYLVVTEFNRSIQGFLVSGVERIVNIAVEDIHPPPELGAESSYLTAVTRFQGELIQVIDVESVLADIAQVRGEAVLDPAMAMPADGPQLQVLVVDDSRVARQQIRSVLDQLGVGATLLSDGKQALDHLLQIHASGENPAERYAMVISDIEMPAMDGYTLTTEIRRHPGLAGLYVLLHTSLSGVFNNAMVERVGANAFVAKYSPHELADFVLDRLRKVAMAA
>NZ_LT906480.1|WP_024958571.1|2464306_2464702_-|flagellar-basal-body-rod-protein-FlgB
MRNLITDYLGVHAQAMPLREQRMKLIASNLGNADTPGYKAQDLDFDAALRHAQGQDANGLMTTTNEQHYEISSGLNPFQIARDGVQPSLDGNTVDPDAERAAYGRAALEYRASLSFVESKVRPMLTAITGQ
>NZ_LT906480.1|WP_010485892.1|2463895_2464303_-|flagellar-basal-body-rod-protein-FlgC
MSNLPIFDIAGSALQAQSVRMSTIASNLSNADTVAGSADAVYKPLEPIFQAVTSKNDPNITSVKVKEITQSEAAPIKRYEPGHPLADGDGYIYQPDVDPVAQMVNLISTSRNYQAGVEMLTTAKELALATLTMGR
>NZ_LT906480.1|WP_024958754.1|2477455_2477671_-|hypothetical-protein
MTLIRALPSLTDSERPRNASVREQLQQLEEVAREEIRELQQLADARPAPPRADEALLGLAWDLGLDGEALK
>NZ_LT906480.1|WP_024958753.1|2477769_2478960_-|chemotaxis-protein
MYSRIFIRLAAPLALTLLLPFAIGFEWPAALRWAILTTMTLSWLGFAWWTTRTQAHRSPEHARVLREQDQLLTELRNFVGNEIEGSRGEVERARDLIRQAVSSLGGSFDAMNRKSRQQSQALSRIVDRAGDEGNAGLDVARFAQHASHRMEQLVEALEQVSGQSSTTVQHIDQMAQHLDGIFALLEDVKSIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLSERSTTFNEQIRKLAHSSKDAIAKVRETVSHMASRDMDRSREARQEAAAMLDNVAQINASLGDGMREVSECARSIDGSVAEAVRALQFEDIATQALGGVHTHLDRLTAINREAVALQELLHRNGGVFDEEIATALQRTGSRLRELRSEWERPPHKPVAQQSMGAGTVELF
>NZ_LT906480.1|WP_005413279.1|2479123_2479738_-|high-frequency-lysogenization-protein-HflD
MSFTVDDRVLALAGIAQALQQVRRIADTGHSDAAAVRTAVDSVFRVDASSPQEVFGDRHALKSGLRLLHNYFRSQGQDPILPKLALSVLQLERRFVQDGATVNKVASGIERAQRQATELGDSGHPDVLANLGGLYADTISHLKPRVMVQGNPHYLGQAGVVAEIRALLLAAVRAAVLWRQLGGSYWDFLFSRKAMIEAVDRQLA
>NZ_LT906480.1|WP_005413280.1|2479734_2480877_-|tRNA-2-thiouridine(34)-synthase-MnmA
MSTPRVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNWADDGSGDCRAEDDRRDAVAVCGLLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERIATGHYARVTQRGHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLRRIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLPARPGQILDPADGSVIAEHPGVFYFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIAGSPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGDVCLGGAVIAATDAPLEQRLRTTPSPFEVIAA
>NZ_LT906480.1|WP_005409590.1|2480873_2481335_-|NUDIX-hydrolase
MNATPDPRWAPHATVATVVVDGGRVLLVEETIDGRQVLNQPAGHLEPGESLAEAALRETREETGWTVQLTHFIGCYQWTAGDGTAFLRFCYAARPVSHDPAQPLDTGIDRALWLTPAELQAAGERQRSPLVWQVVADYLGGQRHPLSLVREVA
>NZ_LT906480.1|WP_005409591.1|2481336_2481807_-|hypothetical-protein
MKRTLLPALLIALAATGSAAAADADKAVARHLDKLGYTYEVDEDGDYRMVFDVEGDRTQMVYVRSSVEDFGTHNIREIWSPAYNAKTKQFPVAVANRLLEDSQDAKMGGWVKQDTTAMFVVKIDADATADQLSDAIDAAIRTADAMELELTKKDEF
>NZ_LT906480.1|WP_038645966.1|2481919_2482246_+|ATP-dependent-Clp-protease-adapter-ClpS
MPHESSPDSQHEHGVAVEAVRPEVAPPPFYQVMLLNDDYTPMDFVVDVLQQFFSMDLDKATQVMLHVHTRGRGVCGVFTREVAETKVAQVNEYSRMNQHPLLCTMEKA
>NZ_LT906480.1|WP_024958751.1|2482381_2483194_-|APH(6)-family-putative-aminoglycoside-O-phosphotransferase
MSEPYLSRWRLRRDGPAIRTPHARLWPVLTAAGEPAMLKISSETEEQNSHRLLRWWNGDGAARLLAHEGPAILIERARGDSLRQRSIEGDDDACTAILCQALQRLHRPRSAPPAELVCLRTWFADLLQPRAVLPPLLEQCRSLAEGLLHDEQEIRPLHGDLHHDNVLDFGPRGWLAIDPKRLLGDRAFDYTTMFSNPDLCGPGIHVATRPERFAIRLEQVCALAELERTRLLRWIAASTALSAVWFRDDGDPADIDETVARMALEALAEA
>NZ_LT906480.1|WP_005409594.1|2483332_2485618_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MFSKDLEHTIGQCYKRAREARHEFMTVEHLLLALLDNPSAQAVLKACGADADRLRQELEQAIEASVSRLAEDDGRDTQPTLGFQRVLQRAVYHVQSSGKKEVTGANVLVAIFGEKDSHAVYYLNQQDVTRLDVVNYLSHGIAKLGDEGEQSSSSPEGESRMEGGEGEPKGDALTEFASNLNDQARAGRIDPLVGRADEIERTIQVLCRRRKNNPLYVGEAGVGKTAIAEGLARRIIEGSVPDVLADAVIYSLDLGALVAGTKYRGDFEKRLKSVLTALKKVPNAVLFIDEIHTIIGAGSASGGTMDASNLIKPALASGELRCIGSTTFQEYRGIFEKDRALARRFQKIDIVEPTVGETYEILQGLKSKYELHHGVTYSDEALQAAVDLSVKHIGDRLLPDKAIDVIDEAGARQRLLPEEQRKELIDVEEVEAIVAKMARIPAKQVSATDKDVLQHLERNLKMVIFGQDPAIETLSSAIKLARSGLGNPEKPIGNFLFAGPTGVGKTEVTKQLALQLGIELVRFDMSEYMEPHSISRLIGAPPGYVGFDQGGLLTEKIVKTPHCVLLLDEIEKAHPDIFNILLQVMDRGVLTDTNGREANFKNVVLVMTTNAGAAQASRRSIGFTKQDHATDAMETIRRSFTPEFRNRLDAVVQFQALGFEHILRVVDKFLIELEMLLQDKHVSLSATPTARDWLAHHGFDPLMGARPMARVIQDKIKRPLADELLFGKLVNGGKVSIDVRDDELVVETQAEPERLLPVTVE
>NZ_LT906480.1|WP_024958750.1|2485696_2486080_-|hypothetical-protein
MNALLPHVLLPAVLLVSLPLAAFAAESSKPSNASECIALGANRDIRPSSTEREVLLRDGDNHYRVHLQKRCLGAAASASYVFFTPSTPERICGDARSTLKTDSNHCTVTRIEPIDAATFRRLAQQGR

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Crispr_ID: NZ_LT906480_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_8

2778991-2779091

Orphan

Consensus_repeat	Method
TGCCGGCCAGCGGCCGGCACTACCCTGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_8

>merge|NZ_LT906480|8|2778991-2779091|CRISPRCasFinder
TGCCGGCCAGCGGCCGGCACTACCCTGCACAGCCAGCCCATGGCAGCGTCTCAGGAACGTTGCTTCGGTGCTGCCGGCCAGCGGCCGGCACTACCCAGCAC

>NZ_LT906480|8|8|2778991-2779091|CRISPRCasFinder
TGCCGGCCAGCGGCCGGCACTACCCTGCAC	AGCCAGCCCATGGCAGCGTCTCAGGAACGTTGCTTCGGTGC
TGCCGGCCAGCGGCCGGCACTACCCAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_024956524.1\|2780128_2780872_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187620
NZ_LT906480.1\|WP_005409841.1\|2775567_2775945_+\|copper-homeostasis-periplasmic-binding-protein-CopC	unknown	unknown	gnl\|CDD\|377255
NZ_LT906480.1\|WP_024956519.1\|2788679_2791031_-\|glycoside-hydrolase-family-92-protein	unknown	unknown	gnl\|CDD\|377950
NZ_LT906480.1\|WP_032963259.1\|2774182_2775121_+\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|377240
NZ_LT906480.1\|WP_005409850.1\|2786557_2787232_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|182612
NZ_LT906480.1\|WP_024956527.1\|2775955_2776837_+\|CopD-family-protein	unknown	unknown	gnl\|CDD\|224195
NZ_LT906480.1\|WP_005413603.1\|2773215_2774163_+\|TIGR03571-family-LLM-class-oxidoreductase	unknown	unknown	gnl\|CDD\|274657
NZ_LT906480.1\|WP_024956520.1\|2787224_2788604_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LT906480.1\|WP_012480412.1\|2776882_2777581_+\|heavy-metal-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|130454
NZ_LT906480.1\|WP_005413602.1\|2771379_2772282_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176167
NZ_LT906480.1\|WP_005409854.1\|2791456_2791873_-\|host-attachment-protein	unknown	unknown	gnl\|CDD\|370820
NZ_LT906480.1\|WP_024956526.1\|2777577_2778945_+\|heavy-metal-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|273593
NZ_LT906480.1\|WP_024956518.1\|2791127_2791451_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_LT906480.1\|WP_024956522.1\|2784078_2785251_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_LT906480.1\|WP_024956517.1\|2792353_2793841_+\|glycine-betaine/L-proline-transporter-ProP	unknown	unknown	gnl\|CDD\|182611
NZ_LT906480.1\|WP_024956529.1\|2770626_2771100_+\|MerC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377004
NZ_LT906480.1\|WP_024956521.1\|2785247_2786495_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_LT906480.1\|WP_005409840.1\|2775117_2775441_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226010
NZ_LT906480.1\|WP_024956523.1\|2781004_2784082_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226220
NZ_LT906480.1\|WP_005409837.1\|2772400_2773204_+\|2,5-didehydrogluconate-reductase-DkgB	unknown	unknown	gnl\|CDD\|183012

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024956524.1\|2780128_2780872_+\|SDR-family-oxidoreductase	gnl\|CDD\|187620	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs. 1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	5.46981e-111
NZ_LT906480.1\|WP_005409841.1\|2775567_2775945_+\|copper-homeostasis-periplasmic-binding-protein-CopC	gnl\|CDD\|377255	pfam04234, CopC, CopC domain. CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm.	1.42284e-23
NZ_LT906480.1\|WP_024956519.1\|2788679_2791031_-\|glycoside-hydrolase-family-92-protein	gnl\|CDD\|377950	pfam07971, Glyco_hydro_92, Glycosyl hydrolase family 92. Members of this family are alpha-1,2-mannosidases, enzymes which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation.	0
NZ_LT906480.1\|WP_032963259.1\|2774182_2775121_+\|cyclase-family-protein	gnl\|CDD\|377240	pfam04199, Cyclase, Putative cyclase. Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form part of the active site.	3.33638e-26
NZ_LT906480.1\|WP_005409850.1\|2786557_2787232_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	2.491e-68
NZ_LT906480.1\|WP_024956527.1\|2775955_2776837_+\|CopD-family-protein	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	4.7063e-17
NZ_LT906480.1\|WP_005413603.1\|2773215_2774163_+\|TIGR03571-family-LLM-class-oxidoreductase	gnl\|CDD\|274657	TIGR03571, lucif_BA3436, luciferase-type oxidoreductase, BA3436 family. This family is a distinct subgroup among members of the luciferase monooxygenase domain family. The larger family contains both FMN-binding enzymes (luciferase, alkane monooxygenase) and F420-binding enzymes (methylenetetrahydromethanopterin reductase, secondary alcohol dehydrogenase, glucose-6-phosphate dehydrogenase). Although some members of the domain family bind coenzyme F420 rather than FMN, members of this family are from species that lack the genes for F420 biosynthesis. A crystal structure, but not function, is known (but unpublished) for the member from Bacillus cereus, PDB\|2B81. [Unknown function, Enzymes of unknown specificity].	2.14641e-119
NZ_LT906480.1\|WP_024956520.1\|2787224_2788604_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	9.26616e-52
NZ_LT906480.1\|WP_012480412.1\|2776882_2777581_+\|heavy-metal-response-regulator-transcription-factor	gnl\|CDD\|130454	TIGR01387, Transcriptional_regulatory_protein_PcoR, heavy metal response regulator. Members of this family contain a response regulator receiver domain (pfam00072) and an associated transcriptional regulatory region (pfam00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system. [Regulatory functions, DNA interactions].	7.42065e-117
NZ_LT906480.1\|WP_005413602.1\|2771379_2772282_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176167	cd08478, PBP2_CrgA, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.65667e-118
NZ_LT906480.1\|WP_005409854.1\|2791456_2791873_-\|host-attachment-protein	gnl\|CDD\|370820	pfam10116, Host_attach, Protein required for attachment to host cells. Members of this family of bacterial proteins are required for the attachment of the bacterium to host cells.	1.84971e-30
NZ_LT906480.1\|WP_024956526.1\|2777577_2778945_+\|heavy-metal-sensor-histidine-kinase	gnl\|CDD\|273593	TIGR01386, Probable_sensor_protein_PcoS, heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (pfam00512) and a domain found in bacterial signal proteins (pfam00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.	2.73362e-113
NZ_LT906480.1\|WP_024956518.1\|2791127_2791451_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.06272e-18
NZ_LT906480.1\|WP_024956522.1\|2784078_2785251_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.13349e-36
NZ_LT906480.1\|WP_024956517.1\|2792353_2793841_+\|glycine-betaine/L-proline-transporter-ProP	gnl\|CDD\|182611	PRK10642, PRK10642, proline/glycine betaine transporter ProP.	0
NZ_LT906480.1\|WP_024956529.1\|2770626_2771100_+\|MerC-domain-containing-protein	gnl\|CDD\|377004	pfam03203, MerC, MerC mercury resistance protein.	9.87872e-10
NZ_LT906480.1\|WP_024956521.1\|2785247_2786495_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	8.7713e-27
NZ_LT906480.1\|WP_005409840.1\|2775117_2775441_+\|hypothetical-protein	gnl\|CDD\|226010	COG3479, COG3479, Phenolic acid decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism].	0.00888902
NZ_LT906480.1\|WP_024956523.1\|2781004_2784082_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|226220	COG3696, COG3696, Putative silver efflux pump [Inorganic ion transport and metabolism].	0
NZ_LT906480.1\|WP_005409837.1\|2772400_2773204_+\|2,5-didehydrogluconate-reductase-DkgB	gnl\|CDD\|183012	PRK11172, dkgB, 2,5-didehydrogluconate reductase DkgB.	0

>NZ_LT906480.1|WP_024956526.1|2777577_2778945_+|heavy-metal-sensor-histidine-kinase
MSLRRSIAVRLTLLFAIVATLVLAALGVAIYVSARHDLVAQDFVELENKVALIRDLADNGPASARGKRLAEALGHHPDIAFHVVDGRGAVLFSTAPALLREHARGQPIDAAPRRHDWILADGRCMHALHLRQTLADGSPLVTLLAIDDDRHADFLQRFRHLLAIAIIGAAVASSLLGGYVVRRTLRPLRTLADEARQITAGRLQRRLSARSAPAELEQLAQTLNGMLARLQQDFARLTEFSGDLAHELRTPITNMLTQVQVVLAHPRSNEAYRETLASCAEELQQLAQTVGDLLYLAQAEAPGALPSRELVALDGVVDSLLEFYDLLAEDRQLTLRRDGVASVEGNRLMLHRAIANLLSNALKHAAVGSEVRVRLIEADGVCRVSVHNLGTPIAAEALPRLFDRFYRGERGRHEGAGLGLAITRAIAQAHGGSVSVVSDDTGTVFELVLPGAAAR
>NZ_LT906480.1|WP_012480412.1|2776882_2777581_+|heavy-metal-response-regulator-transcription-factor
MKLLIVEDEPKTGNYLRQGLIEAGYVVDLACNGVDGLHLAGSGEYQLVILDVMLPGLDGWNVLSRLREAGWQVPVLFLTARSSIADRVQGLELGADDYLAKPFAFAELLARVRTLLRRGQAQPQAERIVIADLVVDTLRRRVERGGQRITLSQKEYTLLELLARRRGEVLPRSLIASQVWDMNFDSDTNVIDVAIRRLRAKIDDDFDAKLIVTVRGMGYVLEAPDDGAVHSG
>NZ_LT906480.1|WP_024956527.1|2775955_2776837_+|CopD-family-protein
MAELSPYALRLALYLVLMLLFGRMLFVRPVPRGVPLALALIALAVVVTDAITRLSGVLGIAPVDIDPATAHWFLTSTPVGEAGLLRTVAVLAMLPLLASATPLGGPRRVALLALSGMALASLSWNGHAAAGDGFGGTLRLLAGNVHLLAVGAWVGAIAAILQLALRPQGLHLRERTHALWQAAHSFALPGTVIVAALAMTGTYTYVDLGGSVQTLIGTAHGRWLLLKLALAGGMLGLAALHRWRLVPALAVSIRGGWQPRPLRSLRQSLACESLLALLVLACVAVLGTLDPLA
>NZ_LT906480.1|WP_005409841.1|2775567_2775945_+|copper-homeostasis-periplasmic-binding-protein-CopC
MTRSLRRSASLALLLSGLAVAPLALAHPSLVRSTPAADATIAPATEITLQFSEKVMPRATRIELSMDHGRMKMAMPTTAQDISEDGHTLRARFAKPLPAGSYALQWRAVGQDSHPMTGNYRFTVK
>NZ_LT906480.1|WP_005409840.1|2775117_2775441_+|hypothetical-protein
MNTAPALPLFAGRRFRVSYDGLAADNVYSADGRHVQYAIVSGAYAGAQGEAACEWQQIGEGVYAISWQEADGATVVHVDDFVGGRSLAWFTATDGSFHRMQGPLAAL
>NZ_LT906480.1|WP_032963259.1|2774182_2775121_+|cyclase-family-protein
MKMKTLAALALATLPLSFQATAEEWYPSAYGAHDEIGAANLLTADVVKHAVSLVRTGKTYPLAVPVDKNLPAFRHRSFRLYNVQVGQQAGKSLGPNKFTFNDELVNAWTGVGTQLNGIGHIGIDNVYYNGNKAADFVTVDGVRKLGVEKVPPMVTRGVVLDMTAYYGKAIVPGGTEFTVADIQAVLKKQGLSLRKGDVVLFNTGWLELIGKDNTQFLEVEPGIGMEAAKWLADQGIVAFGGDTWASEVYPNPNGTEEFPINQYMLAKRGIYNLELIDSRALVRDKAWEFLFVLGQPLYVGSTQVNINPVAIR
>NZ_LT906480.1|WP_005413603.1|2773215_2774163_+|TIGR03571-family-LLM-class-oxidoreductase
MGSALARLQAGGFSIGIEAPLDNDWTPLGEQARRAARRLPGEPDLQRHAELARLADRLGFRALWVRDVPVYDPAFGDAAQVFEVFSYLGYLAGITNDILLGTGAVVLPIREPLLTLKSARSVQRLSGDRLLLGVASGDRPVEYPLFGRDFDSRGSRFREQIALLREGAAAHLPQGLDVLPADGPALPLFVAGLAQQQPAWIGQHMDGCLAYPGAPQDHAQRVAAWRAVAGNKPYASFIHLDLVDDADAPLQRWRFGLRGGRNALLAELHAMQAAGVDHIGLQFRRNERPLAETFHEIAEYVLPHFPAHAGATATA
>NZ_LT906480.1|WP_005409837.1|2772400_2773204_+|2,5-didehydrogluconate-reductase-DkgB
MSVPSFGVGTFRLTGQTVIDSVRNALDVGYRAVDTAQIYGNEAEVGQAIAESGVPRDQLFLTTKIWVDNYAADKLIPSLRDSLAKLRTDYVDLLLIHWPAPGNGVELREYMTALAEAKTLGLTRQIGVSNFNIELTRQAIEVVGAGEIATNQIELSPYLQNPALTAFLQDQGITVTSYMTLAYGKVLKDPVLAAIADKHQATVAQVALAWALQRGYSVIPSSTKRENLASNLLAQDLHLDADDMAAIAALDRNGREVDPPGLAPAWD
>NZ_LT906480.1|WP_005413602.1|2771379_2772282_-|LysR-family-transcriptional-regulator
MKTTLDELKAFVAVVDSGSITAAAEALELTISATSRTLARLEDKLQTTLLRRTTRRLELTEEGAAFLEYARTILATVDEAEEQMAARRLQPVGRLRVDAATPFMLHVIVPLLEGFRERYPQVELELNSNEGITDLIEKRTDVAFRIGVLRDSTLHARPIGHSRIRVVASPEYLRRQGTPTRVEQLREHDLLGFTQPSSLNEWPLQDADGGPFVIEPAIASSSGETLRQMAVAGLGIACLSDFLTRQDRRDGRLVQLFARQTQEVRQPINAVYYRNTALAARITCFVDHVTQTLGQRPFDE
>NZ_LT906480.1|WP_024956529.1|2770626_2771100_+|MerC-domain-containing-protein
MDHIPTTPARALAQPPTSARWHPRFDLAGAWLSLACAAHCIALPLLLAFVPAAMMALRSFQHPGHGAMTLLLMMSHWEWLFALLASSLALASTSAGVHRHGRWPPLRLACIGAILLLSASLYLPLKESLLWHGVATATGGVLLACAHIGNRRALRTR
>NZ_LT906480.1|WP_024956524.1|2780128_2780872_+|SDR-family-oxidoreductase
MTPSPARSVALVTGGSRGIGAAISRRLAAEGHAVAINYAGRRDDADALAAELSAAGAQAIALQADVADPQAVRQLFDAIEARFGGIDVVVNSAGVLQLAPLADTDDALFERVIGINLKGAFNVLRESARRVRDGGRLITLSTSVVGIKLENYSVYAASKAAVETMGAILSKELRGRNITVNAVAPGPTATDLFLDGKSPELIERLAKMNPLERLGTPEDIAGAVGFLAGADGGWINGQVLRANGGMV
>NZ_LT906480.1|WP_024956523.1|2781004_2784082_-|efflux-RND-transporter-permease-subunit
MIDRLIAYCLRQPLMVMLALLLFIGAGIAAFRVLPVEAFPDVSDTQVTVVSLHTGRAAEEVEREVTMPLEVALSGIPHSVRVFSHTQFGLSMIILTFDDKADDYFARQQVLERLQGVELPEGVTPELEAMSSAVGEIYRYVLKGPHMTPTQLRTVQEWTMERSLRTVPGVADVISFGGFARTFQVKPDLDKLRDRGISLREFAEALEKGSSNAGGGYVERGQQQFLIRGVGLMRSPADIGNVVVEQRGGTPILVRDLASIADTGLPRQGLVGQDDNDDAVFGMVLMRKGENPSDVLGALHARIAEIEANQLPHGVSIEPFYDRSWLVSTTLKTVFSNLLEGAVLVFLVLWLFLYNARAALIVAAMMPLALLSTFLGLHLWGVPANLLSLGAMDFGIIIDGAVIVTEHIVSRLSKLPPAADRKTRFSTILSAASEVGRPTFFSMLIIIAAHIPIFTLQRQEGRMFAPMAYSVTSALIGALILALTVVPLFCYWWLRRDRMRDGNPLMDRLTGWYRPILERALARPRAVVLTAVALLAGTLALGTRLGSEFLPELDEGSIWLTATLDPSTSLAEAQQQSRRIRELVGTFPQVSTVVAKLGRPEDGSDAKGANQIEALVALKPEKEWPKGVDKRQLVSDLQRTLEQRIPGPEFSISQPVRDNILESISQIKGQVVIKVSGSDLDVLNQQAQAILGQVRGVEGVESAFIDRDGSLPQLQIEIDRDRAARYGLNVRDIDEVIETALGGRQVGELWEGDRRFPITLRLDDADRDLQRLRTVPVGIGDGHTVTLSDVADFRMASGAINISRENAQRVKAVSIFIAGRDMGSVVADMRKRVDASVQLPEGYRLEWSGEFENQQRAMKRLGWVIPLSVLIIFVLLFDAFKDISSAALILANVPLAMIGGILALWLTGIPLSVSAAIGFIALFGQAVLNGVVMLSRFAQLREQGMDLLQSVVQGSLQRLRTVLMTALLAMFGLLPMATSHAIGAETQKPLAVVVIGGLLSAMLLTLLVLPTLYYWVHRRREARTG
>NZ_LT906480.1|WP_024956522.1|2784078_2785251_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKSPVAHRPRARHGVLPALLALALLVGCGREPASYTEDAPQISAGQIQFPAGSRQLDVLRSEAVTAGASASLQLPGRVVWDETRSSALRTPLPGQVARIEAQPGQKVKAGQLIAWITSPEFGQAQAEGVRGRAELQQARKELERTRELHAAGVASGRELDEAEANFAGSQADHARATAFAKAYGNGQRVDQRLPLRAPIDGVLVERRMSPGMAVSPDSEQPLAVIGDPDRLWLLLDVPESLAGRMKAGMQVSVPGADGQLLQATLQHVDDFVDSERRVVQARAELDNRARGFKAGQYVRAQVALPADGGVSLPDAAVLLIDGKQVVFVEEDKGRYVRHAVHAEELGDGRLWVRDDLAVGSRVVVEGGLLLQQLVDSAPAAASAGTGHAAP
>NZ_LT906480.1|WP_024956521.1|2785247_2786495_-|TolC-family-protein
MNFSSRLAAVLATLLCAPAASALSLQEAQRAMEAHNPDLRAAALELRGVQGDAQTAALRPATELSIGTSKISPKHGIGPGRWQDKRVDSTVGLGWTWERGGKRALRIRQADALLEVAGLEMLDARRRQQVALHETYFGLKGAQERARIADANRQSSAEQMAAADKQVATGAMAPVDRARLAVDDLAVADAAREAALDLRDARHALGLLLGRDDSHDLSADDPWPDPAGRVDTRAFDPQQRADLRAARSRLAAADTGVALARSERHRDIQLGVEAEREPTDISGVTWGVSLTIPLGGPSRARGAIQRAEADRDSAALELQVLQREARAELDQLQASAQSAAQRRRDYEGLQSDAARKAVQGIELAYRRGAASLTDLLDARRSWRDFEAALIDARADHAIALARWEAATSVAEGESR
>NZ_LT906480.1|WP_005409850.1|2786557_2787232_+|winged-helix-turn-helix-domain-containing-protein
MRILLIEDDAALADGLIRALQGAGHLCDHLSRGLHAPAALASAPYDVMVLDLSLPDVDGLDLLSRLRNDGATLPVLILTARDGVEDRILGLDRGGDDYLAKPFALGELEARLRALSRRRSDAPAQKRLGRLCFDSIRNEVQVEGQRIELTARELSLVEALMQHPGRTVTKQRLFDALYSWDHEANLSVIEVHVSRLRRKLEQARAGVGIRMLRGLGYRLEAAGD
>NZ_LT906480.1|WP_024956520.1|2787224_2788604_+|sensor-histidine-kinase
MTERVHSLRGLLLRRLWLPLLVLLLCSAVGSFALARFYAGQVYDRWLLDSAMSLSELVTVQDGRASIEITPAVSRMFSWDTADEVHGEVVDAEGGRLYGDLPEALPRPATSANSDDAVYYDARLRGQAVRMVEVVVSAGPGHDIRLRVAETLRKRHRLERKLLLTSVPFQAAILALAAWLAWSGTGAAARHANLVARKLASPRPDPLAPLDPAQEAPRELWPAVEAYNALLQRLDAMQDAQRRFVSNAAHQLRTPLAAMQVELESSLRQHDPQAQQLALSGTLAGLARLQHLVNQLLMLSRSEDPHGSALPLQPVDLAALARGVVERYADRALAAGVDLGYEGPDDGVQVQGDPQLLREALGNLLDNALRYGAVPGVITLGVRQEAEGVQAWVDDDGAGIAEAERTRVTERFYRASSEGDGCGLGLAIVAEIAQRHGAILMIDTAPIGGARVGVRFRFR
>NZ_LT906480.1|WP_024956519.1|2788679_2791031_-|glycoside-hydrolase-family-92-protein
MPMPTLDRRLLIAVAATAMLASGLASAAPARTAADKAYASVDPFIGTGGEGHTYPGATVPFGMVQLSPDTRIQPREKAYGWAAGYRYDDSSIVGFSHTHFSGTGHSDLGDILLMPFIGSPGLERGDPEKPRSGYASRFRHDDEKAEPGYYAVTLDDYKVRAELTTSTRVGVHRCAFPKGTDAKVLLDMRTSMYDYPGKVLWSRVRVRADGTVTGFRETRGWAPGRQLYFAMRFSRPLAGHELHNTEQDIVYKGFPPPGEKDPSQRAQIEGRQLVGTFAFGKLDAPLVVKVAISPVSEAGAIANLDAEVADFDFDRVRAQAKQEWTQALSVLDIDAPEHARRSAYTALYHTLLGPTLFMDADGQYRGSDNAVHKADGFTNYSTFSLWDTYRALHPLLTLVQPEKRNSDFVNSMLAHHEHSPYGMLPVWSFHGLEDWCMIGYHAVPVIADAYVKGIRGFDADKALKAMVETANYGPYDGIAQYRELGYVPIDEEGEAASKTLEYAFDDWTIARMAQAMGKGDIAATFDKRAANWRNAFDKDTGFMRARKRDGSFRTPFDPSASGYGTDYTEGNAWQYSWYVPQDVAGLAAAHGGSDKLLARLDEVFNAKVDPSIFEHMEDITGLIGWYAHGNEPSHHVAYLYSYAGQPWRTQARLKQIMDTQYADRPDGLAGNDDVGQMSAWYVFTALGFYPVAPGSGEYILGRPFLPKTAMRLPNGKTFTIVADGLDDRHTYVGSVSLNGKPLQRTFLRHDEILAGGELRFSMQAEPNKDWPGQGAQAPYSMSR
>NZ_LT906480.1|WP_024956518.1|2791127_2791451_-|thioredoxin-family-protein
MPFMRDHLSAEPDRLDVEAQVGWLLLEFGAPWCGHCQAAQPALQAFVEANDLPHWKIEDGKGRPLGRAFKVKLWPTVVLLHDGDEVARVARPLDSADLMSLQGALPD
>NZ_LT906480.1|WP_005409854.1|2791456_2791873_-|host-attachment-protein
MTRRIPEGTLVVVADGGSARVFTNVGSDHQLALKQEGELRLQDISEQGVSGQGPAGAVPKDMSVSQLNEATFAKQVAEQLNEDALKNRYAHLVLIADPTTLGRIRPLLHKETQARLLGDIAKDLTNAPLADIQKALAA
>NZ_LT906480.1|WP_024956517.1|2792353_2793841_+|glycine-betaine/L-proline-transporter-ProP
MQDTPDAHAHFGWFKRRRHLKVDEITVVDTPMLKRAVGAAALGNAMEWFDFGVYGYLAVTIGQVFFPSSNPTAQVIAAFATFTVAFLVRPLGGLVFGPLGDRYGRQKVLAFTMILMALGTFAIGLIPSYERIGIWAPVLLLLARVVQGFSTGGEYGGAATFIAEYSTDRNRGLMGSWLEFGTLGGYIAGAGTVTALHMLLSSEQMLDWGWRIPFLVAGPLGLLGLYMRMKLEETPAFRAFAEEAEKREHDRPGLGALFQVHGRQLLVCMGLVLVFNVTDYMLLTYMPSYLSVTMGYAESKGLLLIIIVMLVMMPLNIVGGLFSDRLGRRPMIIGACIALLVLAIPCLLLVGSGNDGLIFLGLMLLGLALVCFTSSMPSTLPALFYTPVRYSALSIAFNVSVSLFGGTTPLVTAWLVERTGDPLVPAYYLMGAAVIGLVTMLFVKETAGLPLRGSPPAVGSDREAAALLKSDVPVTVDSTLPPLPEAAEPEQVKPA

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Crispr_ID: NZ_LT906480_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_9

3749617-3749720

Orphan

Consensus_repeat	Method
CGGTCGTGCCGGCCGCTGGCCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_9

>merge|NZ_LT906480|9|3749617-3749720|CRISPRCasFinder
CGGTCGTGCCGGCCGCTGGCCGGCAACGCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGGCGGTAGTGCCGGCCGCTGGCCGGCAA

>NZ_LT906480|9|9|3749617-3749720|CRISPRCasFinder
CGGTCGTGCCGGCCGCTGGCCGGCAA	CGCCAACCAAGGTTGGCATCCACCAGAGCCGGGCCATGCATGTGAACGCAGG
CGGTAGTGCCGGCCGCTGGCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_005410644.1\|3753238_3753610_+\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_LT906480.1\|WP_005414170.1\|3749755_3749941_-\|DUF2065-family-protein	unknown	unknown	gnl\|CDD\|225782
NZ_LT906480.1\|WP_005410646.1\|3754852_3755335_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
NZ_LT906480.1\|WP_024956937.1\|3752154_3753150_+\|YhdH/YhfP-family-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176183
NZ_LT906480.1\|WP_005410636.1\|3745731_3746694_+\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|341130
NZ_LT906480.1\|WP_024956940.1\|3742438_3742978_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024956936.1\|3756012_3758394_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NZ_LT906480.1\|WP_005410639.1\|3748091_3749384_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_LT906480.1\|WP_005414169.1\|3750007_3750871_-\|protease-modulator-HflC	unknown	unknown	gnl\|CDD\|259803
NZ_LT906480.1\|WP_024956941.1\|3741557_3742298_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_LT906480.1\|WP_024956942.1\|3741059_3741548_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_LT906480.1\|WP_024956943.1\|3738946_3741037_+\|catalase	unknown	unknown	gnl\|CDD\|236886
NZ_LT906480.1\|WP_024956935.1\|3758458_3763366_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_LT906480.1\|WP_005414168.1\|3750867_3752001_-\|FtsH-protease-activity-modulator-HflK	unknown	unknown	gnl\|CDD\|130988
NZ_LT906480.1\|WP_005410647.1\|3755364_3755940_+\|ferritin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|225104
NZ_LT906480.1\|WP_024956938.1\|3743372_3745499_-\|MCP-four-helix-bundle-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_LT906480.1\|WP_005410637.1\|3746698_3747376_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_LT906480.1\|WP_005410645.1\|3753698_3754592_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|182347
NZ_LT906480.1\|WP_005410634.1\|3742992_3743283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005410638.1\|3747311_3747974_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_005410644.1\|3753238_3753610_+\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.3106e-35
NZ_LT906480.1\|WP_005414170.1\|3749755_3749941_-\|DUF2065-family-protein	gnl\|CDD\|225782	COG3242, COG3242, Uncharacterized protein conserved in bacteria [Function unknown].	6.77277e-12
NZ_LT906480.1\|WP_005410646.1\|3754852_3755335_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	3.28546e-78
NZ_LT906480.1\|WP_024956937.1\|3752154_3753150_+\|YhdH/YhfP-family-quinone-oxidoreductase	gnl\|CDD\|176183	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	1.84966e-162
NZ_LT906480.1\|WP_005410636.1\|3745731_3746694_+\|L,D-transpeptidase-family-protein	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.09716e-26
NZ_LT906480.1\|WP_024956936.1\|3756012_3758394_-\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NZ_LT906480.1\|WP_005410639.1\|3748091_3749384_-\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_LT906480.1\|WP_005414169.1\|3750007_3750871_-\|protease-modulator-HflC	gnl\|CDD\|259803	cd03405, SPFH_HflC, High frequency of lysogenization C (HflC) family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily. This model characterizes proteins similar to prokaryotic HflC (High frequency of lysogenization C). Although many members of the SPFH (or band 7) superfamily are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this SPFH domain superfamily may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another SPFH superfamily member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during lambda phage infection.	3.90151e-107
NZ_LT906480.1\|WP_024956941.1\|3741557_3742298_-\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	4.96619e-07
NZ_LT906480.1\|WP_024956942.1\|3741059_3741548_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	8.56419e-14
NZ_LT906480.1\|WP_024956943.1\|3738946_3741037_+\|catalase	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
NZ_LT906480.1\|WP_024956935.1\|3758458_3763366_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_LT906480.1\|WP_005414168.1\|3750867_3752001_-\|FtsH-protease-activity-modulator-HflK	gnl\|CDD\|130988	TIGR01933, Protein_HflK, HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (SS 8/27/03].	7.7381e-117
NZ_LT906480.1\|WP_005410647.1\|3755364_3755940_+\|ferritin-like-domain-containing-protein	gnl\|CDD\|225104	COG2193, Bfr, Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism].	2.09173e-34
NZ_LT906480.1\|WP_024956938.1\|3743372_3745499_-\|MCP-four-helix-bundle-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.80541e-79
NZ_LT906480.1\|WP_005410637.1\|3746698_3747376_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.11426e-25
NZ_LT906480.1\|WP_005410645.1\|3753698_3754592_-\|DnaJ-domain-containing-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	1.98574e-74

>NZ_LT906480.1|WP_005410639.1|3748091_3749384_-|adenylosuccinate-synthase
MGQSVVVLGAQWGDEGKGKIVDLLTEEIGAVVRFQGGHNAGHTLVINGKKTVLHLIPSGILRDDALCLIGNGVVISPAALQKEIAELEASGVEVRSRLKISPAAPLIMPYHIALDQARERAAGGKAIGTTGRGIGPAYEDKVARRGIRIADLHYPKQLEELLRTALDYHNFVLTKYLNTDAVDFQKTFDEALAFGEYVQPMKSDVAGILHDLRKQGKRVLFEGAQGALLDIDHGTYPYVTSSNTTVGGALAGSGVGADSIDYVLGIAKAYATRVGGGPFPTELDDEVGQGIRDRGAEYGASTGRPRRCGWMDIVALKRAVAINGISGLCITKLDVLDGMEKLKVCIAYEYNGKRTEYAPLDAQGWEECTPVYLEFPGWSENTHGITNWDDLPPAARAYLRSLEELAGCPISIVSTGPDRDHTMVLQDPFA
>NZ_LT906480.1|WP_005410638.1|3747311_3747974_-|hypothetical-protein
MKGETVVRITLWVLWSLWGIACLVLVLGAAANTLASRTQTVPLVLSPGATAQITVYRLIDDQLRLRLRYAADGTDADPEVLLRIETPTDHGDFRAGERSGVAGQGINRGLASVESSGLMASYFGYGRGDALPRGRSWVRVTVLEVDPALADRAATVELQPPLDLLKLTDLDYVWLWPFFFWKVAALLLLIPGAALAVFTFTLRRWQHRASKQADSAVGTD
>NZ_LT906480.1|WP_005410637.1|3746698_3747376_+|M23-family-metallopeptidase
MRLSQLIVLGVLLGLGAGWWLRRDAGEPVAASLPEAQPAAAVAPAKGSVAPLDTAPAPAATVPSAARTADAPSGLLLPVQGVLASQLRDTFTDARSEGRVHDAIDIMADAGTPVLAVADGTVEKLFDSERGGLTIYQFEPSGRWCYYYAHLQRYADGLTEKQVIRRGEVIGYVGSTGNASAEAPHLHFEVHVLGPEKQWWKGESINPYPLLNPPASKPGAASAAK
>NZ_LT906480.1|WP_005410636.1|3745731_3746694_+|L,D-transpeptidase-family-protein
MPLPVYRSTLLALSLLASPAFAQAPPPGLPAPIAEKAGPDTAARSALHAQVLLDRANFSPGQIDGEVGSNQRRAVSGFQAAHGLTVTGELDDATWQALQADTVTPLASYTLTSEDVAGPFQAVPKGPAAQAKLKSLGFNNVEESLGERFHASPELLKLLNPGVDLSKAGNRIQVPNIAPSPLPKAAKVVVDKSDSSLQLLDAQGKVIAQVPVSSGSQHDPLPIGEWKILGVYRDPPFHYNPKLFWDARKGEKKATLPPGPNNPVGRVWIDLSKPHYGLHGTPEPGHVGKTESHGCVRMTNWDALRVADAVDTSVPVVMQE
>NZ_LT906480.1|WP_024956938.1|3743372_3745499_-|MCP-four-helix-bundle-domain-containing-protein
MNYLRNVRVAWRLGLGFGLLLLLVAAVVATGATASVVQKRAMQQVVDVSVAKVRLLSQMLDANNQMMVVRREMLIRQGDDRGHDEQRIADLVKRYEASWTAYQALPSDAEGKAIAETIAAKRAIARPLNKQTSELMEQGDYPGAVALTLGPVQEAANGWNKALSDGVDFEEKESREAAAEAIRLGERSLLQLLVLGGVALLVGIGASVMIGRSLTGPLARAVNVAERLSRGQLDQEFRLGGRDELTQLGEAMASVRQSVQAAIGAQLQMAEQHEAGAIRYRMDASAFPGDFGRMVQATNSLVESHVQVELLMAEVMQRYAIGDLSRDLPDYPGEKGTLTRTLAAVKQSLMAINAQIDALARAARAGDFSMRGDAAAFQFQFKAMVEHLNGMMASSQASIADVSDVLRAISHGDLTARMDGEYDGVFARMRDDANTTTAQLTGIVRGIQVAADSINNAAQELAAGNNDLSRRTEQQAANLEEAAASMEELTSTVRQNAELARQADSEAHAAGAAVRETEQAMAQMASVMGEIDQSSARISEISTVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRAGVAAKEIKELIEDAAAKVKSGLAVTVESEAAIARVAQASSRTTQLMSDIAAASKEQAAGIEQVNQVVVQMDQVTQQNAALVEEATAASRALEEQAHALTTSVAVFKVEQGARMPIVPAQAA
>NZ_LT906480.1|WP_005410634.1|3742992_3743283_+|hypothetical-protein
MKMRRLLSWTGLALCVVYLLLTAWLVHGAQSDADPKGAYILMSLPITLQSAALDAIGAGSLLYGKPWSTAYAVLVPPTLLLLYAAGWLIERAARGR
>NZ_LT906480.1|WP_024956940.1|3742438_3742978_+|hypothetical-protein
MRWTYALAMMAMMLPLNSSASDGWISGDGKAMPETDAMKSSSGFAASLLVTSDADWQAKWETPPESTPGFTQADEVHPGGELFLLTFLSNPQLDENRVPKVHCDLRMLRPDGTTSIDERDVPCFTAALPGPPTLLYMTNLHLKFVAEASDPKGTWTAQVVVRDLLRNVSLPLQAHFDVR
>NZ_LT906480.1|WP_024956941.1|3741557_3742298_-|alpha/beta-hydrolase
MGIGSEEKPGCDSASPTPQHVLMLPGLDGSGRLSIPFLSALQAHGLTTQAITLPAQGGQDHATLAQRLWSQLPGHPFILLAESFSGPLAVELTTRQPAGLRGLVLAATFARRPVPLPAASAALLTPTWPLPPVALLAGLLLGRWRTREHLSMLRDALARIPAATLRRRAAATLRVDVRALLPAIDVPTLCLHACHDRLLWPPSVAELQALLPDARHVSLEGPHLLLQARADAAAAEVAAWMRTLSP
>NZ_LT906480.1|WP_024956942.1|3741059_3741548_+|hypothetical-protein
MPRGDKSAYSDKQKRQAEHIEESERERGASEGTAERIAWATVNKQDGGGKRSGSARKGTKKATSKKAAKKAPARKSGTKKATTKATAAKKAPAKKTTARKAAKKAPARKTATKKTAKKTAAKKAGTAASRSAAAKKAAKTRAAKKTVRKVAAKKAARTRARG
>NZ_LT906480.1|WP_024956943.1|3738946_3741037_+|catalase
MAASKPTGKRATTHAENHHRGSGDELHQQAGGSHPAMTTDQGIPVADNQNSLRQGPRGPTLLEDFILREKITHFDHERIPERIVHARGSAAHGYFELTRSLKAHTRARILTEVGVKTPVFTRFSTVAGGAGSVDTPRDVRGFAVKFYTREGNWDLVGNNIPVFFIQDAMKFPDLVHAVKMEPDRAFPQAASAHDTFWDFISLMPESMHMIMWAMSDRAIPRSLRMIEGFGVHSFRLLNEAGESTFVKFHWRPKLGIQSTVWDEALKLQSADNDFHRRDLFEAIQRGDFPEWELAVQLFTEEDADAFPFDHLDPTKIIPESLVPLQVIGRMVLDRWPDNFFAETEQVAFCPANVPPGIDFSNDPLLQGRLFSYLDTQLLRLGGPNFHQIPVNAPKCPFANHQRDGHMQMQVPKGRVAYDPSSLQEDTPRETPAGFRSHASADDGRKGRTRAESFADHYSQARMFFRSLEKPEQAHLASALVFELSKVETLKVRVRTVSHLRNIDDSLAQRVADGLALPALPDPAPTATPVRDMPPAPEVRVIGRNKPTLQGRCIGILFDEGSDARIIASLSKAARKAGADVKLVAPRVGGATLSDGALQAADGQLAGTPSAVFDAVALVLSPEAAKALSKESAAIEFVSQAWAHLKAIASDAGGQALLKAARVGNDAGIVEAEDAKAFLAAAATRQWAREPKLRLLA
>NZ_LT906480.1|WP_005414170.1|3749755_3749941_-|DUF2065-family-protein
MKDLFAAVCLVAVLEGLFLFVAPFAWKRMAERLLDLPSPALRSFGGLVLLAGLSLLWWVRH
>NZ_LT906480.1|WP_005414169.1|3750007_3750871_-|protease-modulator-HflC
MKSPIWIAVIVAVVLGLLGSVYVVREDQTAMVLNLGKVVRSDIKPGLHFKVPVVETVKVFDRRFQVLDTAPARYFTAEQKDVSVDFFAIGYISNVGDYFRATGGDPRIANARLAPIITDSLRNQINSRTLQQLVSGDRSELIAEQLKGINEAVAGLGMQMIDLRIKQVDLPTDSQVINDVYERMRAQRKQEAAKLRAEGEEQSLTIRAQADRDSTVLIAEAERDAQRLRGEGDAEAARIYGKAGSADPSFYAFYRSLEAYRGSMTDGNGVIVLDKNDPFLQYLKNDR
>NZ_LT906480.1|WP_005414168.1|3750867_3752001_-|FtsH-protease-activity-modulator-HflK
MAWNTPGGNKGGQGPEDNRRGPFGSRGGGNGGGWGGLPGPLKDLFDGGIVRWVVAAVVLLVLFSSFQLIGEQQRGVVLRFGQFSRILQPGPNFKLPWPIESVTKVNATEIKTFSIQVPVLTRDENIVNVSLNVQYRIDDPQQYLFGTVDANQVLEQSAQSAVREEVGRADLNAVLNNRGPLAVAAEERLQALLKAFKTGLTVTGLTLQDARPPEEVKPAFDEVNGAQQVKERLINEAQAYAAKVVPEARGQASRARTTAEGYKQAVVSKAEGDAQRFSLLQAQYKDAPEVTRKRLWLETVQQVLSENRKVIGGDGRQLIYVPMTGDTRPSTSAPAAVANPDVVMPSLPGAATEASRDPGRPVGRPTGRPSGREEGSR
>NZ_LT906480.1|WP_024956937.1|3752154_3753150_+|YhdH/YhfP-family-quinone-oxidoreductase
MAPTTPFTAFRIENDDAGYRSGLVRLGVDDLNPGQVLIRAHWSSVNYKDALAGTGKGKILRRFPLVGGIDVAGTVVASTDPDWREGDAVLATGCGLSETRDGGYSQYVRLESRAVIAQPAGLTPREAMVLGTAGFTAALALLRMQDNRQTPELGPLAVTGASGGVGALALSIFSRAGYSVHAVSGKPDQAGFLRSIGATEVLPRDALADTGALQSARFGGGLDNAGGAMLASLLAQTVPYGSVVSAGLAASPTLDMTVMPFILRGVSLLGVSSANAPRGLREEVWSRLGSDWKPHHLDRICTAEVGLDGLPAVFERMLAGGSLGRTVVRID
>NZ_LT906480.1|WP_005410644.1|3753238_3753610_+|response-regulator
MARILIVDDSPSQLLGIQRIVEKLGHQILTATDGAAGVETAKAELPDLVLMDVVMPNLNGFQATRTLARDEATRHIPVILVTTKDQDTDRMWGMRQGAKAYITKPFSEDELSEVLERVFAGQG
>NZ_LT906480.1|WP_005410645.1|3753698_3754592_-|DnaJ-domain-containing-protein
MEFKDYYATLGVEPSAGEAEIKTAYRRLARKYHPDVSKEAGAEDKFKAVNEAYEALRDPEKRAAYDQLRAQGYRPGEEFNVPPNYGGAGGFNFEEVFGGGGPNGGFSDFFESLFARQRGGAGAGAGPGFSSQGHAPNRDTRAKLSVPLEAAYSGDSLRITVNGKQLDVRVPKGIRPGQVIRLAGQGNHGGNLLLEVEYAAHPQFEVDGRNILYTLPLTPWQAALGTSISVPTLGGAVELKIPADSDAGRKLRLRGRGLPGNPDGDQIVEIEIVAPAATDEAQKKAYRNLAKAFGETI
>NZ_LT906480.1|WP_005410646.1|3754852_3755335_+|peroxiredoxin
MTIHVGDRIPEVTLKRIREGIETLDTHSLFDARKVVLFAVPGAFTPTCSARHLPGYVEKFEAFRQRGIDVYCMAVNDPFVMKAWAADQSVPDGLLMLSDGNAELTRALGLELDASASGMGIRSRRFALYVDDGVVREAWVEQPGQFEVSSAEYVLEHLPT
>NZ_LT906480.1|WP_005410647.1|3755364_3755940_+|ferritin-like-domain-containing-protein
MSSKPAKASKPAANVPGISDRATLRERARRNLEDGAITDSYSADREVVIKLLNDALATEYVCVLRYYRHYFMAKGMLADAVKAEFLEHAQQEQAHAGKLAERIVQLGGEPDLNPDTLTARSHAEYKEGSDLRDMVRENLVAERIAIDSYREMINFIGDRDTTTKRILEEILAQEEEHADEFADLLDGWIGE
>NZ_LT906480.1|WP_024956936.1|3756012_3758394_-|penicillin-binding-protein-1C
MKNTMTTRLAALRRRLQPLWPWLRWGMAATLALLLVLDFVFPPPLPKQRDTSTLVVAADGTPLRAFADAEGVWRYPASTDSVSPLYLQALLTYEDRWFWRHPGINPLAILRASGQLLRGGRIVSGGSTLTMQVARILDPHTRTPWGKLKQMLRAVQLEVHLSKQQILALYLERAPYGGTIEGVEAASWAYLGKPAAQLSHAEAALLAVLPQAPSRLRPDRHPEAAQKARDKVLSRMAELGAWTAEEVEDARIENVVARSLRPPLHAALLAQRLHSAHPGQARIQSSIDIGLQRTLEERVASYFSTLPERTSAALLVVDNQTLQARAYVGTLAFGDRQRLGHVDMVQAWRSPGSTLKPFLYAMALDDGLIHSESLLVDAPQSFGSYRPGNFDMAFNGPIGASSALRLSLNVPSVDLLQRVGPARFAARLSHSGIQLRFPPGSTPNLSLILGGTGARLEDLVGAFAALNRNGIAGRVRYTDDEPMIERRLASPGASWIVREMLESNPRPGYSVGTFDVGGRPRVAWKTGTSYGYRDAWAIGSTRHYTVGVWVGRPDGTPLPGQYGAVTALPLMFEVVDSLPRQRGDSAAAPMPASVSQEDICWPTGERAEGLPAALCQRLMPAYLLEGAAPPTFPEREARRWQPGRQRYLADARTGLRVSADCRLPHEEVAREIARWPALLSPWLSKATREASQLPALSPDCRDDGREASVALHIDGLNDGATLARAPNSEHGVRLQLRALGSEQAVDWLLDGRWIAQTRGAQLMQREFAEPGAHTLTALAADGAWTQVRFNVLR
>NZ_LT906480.1|WP_024956935.1|3758458_3763366_-|alpha-2-macroglobulin-family-protein
MSGPARRKRWGWAAAVLAGGLLLGLAGCRNDSGQLPKASGEAITTKAEQVKEFTLLRAYPDQKNDGLSLALEFSRPLVGTQDFDKLVRFEEKVGTDDSSWTLSDDGLTLRYPFVEAGKEFSLVVSPDLLAADGSRLGKELKQKVFSGELKPVVGFASQGSVLPAKDSRGLPVVSVNVPEVDVEFLRVREKDLPTFFSQYQRGGRRGSWELSSDYERSPINKLAEPVYVNRFILGGKKNERVLTYLPTQDIKELQEPGLYFALLKRTGDYEGEFDTAFFSVSDIGLHTRAYKDKLFVHTAGLKDGAPLKGIDLRVLDAKGEVVLKGSTDGNGNALLNYTLDATHVLVASTGKDTSFLPFNQPALDLSEFAVAGRDNAWFDVYAWSGRDLYRPGETVRLSALLRDNDGKPVKAQPVFLRLKQPDGKTFRETRLQPGDQGYINFEQVIPAEAPTGRWQVEFRADPASKEAIQGMTLRIEEFLPERMKLDLDSAQKTLKPGEDLRLQANGAYLYGAPADGNRFTARMAVAAEQTPVEGLPGYFFGDPTLQLPREAKDVIDTTLPGNGQLREDVALPEEAAKAKAPIAVVLSGSLYETGGRTVTRTLKRVMWPANALVGVRPLFNPEDGADSNGNARFELMRVDAAGTPQPAKGLKITLVRELRDYHWTFNDNRWDYDFTRRFENKETRTVDAGSSAVAFDFPVEWGEYRVDVFDPSTGLTSRYPFRAGWSWGDDNRGLDARPDKIKLGLDKTGYKAGDTLEVTVTPPHAGKGILMVETDRMLYVQDIDAKPGSTFKIPVTADWERHDVYITALVFRGGSAPSKITPARAVGVVHVPMDRKGRTVAVGLAAPKQMRPEQDLPVTVSAPQLAGKMAHVTVSAVDVGILNITRFPVPDAGAHFFAQRRLGIDAYDIYSRVIESFDGGAGKLKFGGDMALQALPQAKRPTARVQTVDLFSGPVQLDAKGIARIRLKVPDFNGTLRVSALVYSDDQYGKRDVETVVRAPILAEASMPRVLAPGDRSTVTLDVQNFTGKPGQFNVKVESEGPLNLGEGSRSVQLNADAKTTLSFPLSAREGHSVAKVRVRVDGNGFKADRRYDLPVRAAWPQVLRSQVRTLDPLAAVSLDNSLTDGLMAESVNARLLVSPLPPIPFASALQGALNYPYGCAEQTTSKGYAALILDQATSSMLGADGLDAKTRRERMEGAFGRLASMQVANGNFSMWGDDGYVNPWLTPYITEFLLDAKDAGFAVPDNVLQKALNRLSEDLLSGGNQFYGQDDREKLKFANQAYSGYVLARVNRAPLGTLRTLYDNERSKAVGGLSLVHLGVALSLQGDAKRGQAALAAAFAKSSSERPSYFGDYGSAIRDDALMIALTHENKLAKPAWDARAVDLGRGLDARRNAGWMWLSTQEQVAIARLGKALAANQKALVAGELVIGGNTEAIGERKLFGRNFSANELASGVRFTPQGQPPMFASIDVAGIPRSAPAPDNSVLGVERSYYGTDGKPWSPRPLKEGEALIVRVTVTADTTMPDALLTDLLPAGLEIENLNLGDAKQWADVVVDGITISDRGEAADTKHEEFRDDRYVAALKLSRGSKANVFYLVRAVTPGTYSVPPPLVEDMYRPQLRGVGRSNPTTITVVQP

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Crispr_ID: NZ_LT906480_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_10

4127528-4127636

Orphan

Consensus_repeat	Method
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_10

>merge|NZ_LT906480|10|4127528-4127636|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGCAAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGTCAGTGCCAACCAAGGTTGGCACCTACCAGGGC

>NZ_LT906480|10|10|4127528-4127636|CRISPRCasFinder
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC	AAAGACCAGCTGCTGTAGATCCACACCATGCGTGGATGCATGCGT
CAGTGCCAACCAAGGTTGGCACCTACCAGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_005410945.1\|4115948_4116923_+\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_LT906480.1\|WP_024958459.1\|4123973_4124552_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_LT906480.1\|WP_005410957.1\|4127658_4130820_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_LT906480.1\|WP_005414408.1\|4122555_4123974_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_LT906480.1\|WP_033835631.1\|4119030_4120122_+\|threonine-dehydratase	unknown	unknown	gnl\|CDD\|236339
NZ_LT906480.1\|WP_005410964.1\|4137672_4138590_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	unknown	unknown	gnl\|CDD\|181542
NZ_LT906480.1\|WP_005410961.1\|4133433_4134792_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_LT906480.1\|WP_024958462.1\|4130824_4131955_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_LT906480.1\|WP_024958458.1\|4121715_4122495_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369777
NZ_LT906480.1\|WP_024958467.1\|4140458_4141574_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340846
NZ_LT906480.1\|WP_024958816.1\|4116962_4118699_+\|acetolactate-synthase-2-catalytic-subunit	unknown	unknown	gnl\|CDD\|181601
NZ_LT906480.1\|WP_024958817.1\|4118682_4118934_+\|acetolactate-synthase	unknown	unknown	gnl\|CDD\|226486
NZ_LT906480.1\|WP_024958460.1\|4124541_4125603_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|234832
NZ_LT906480.1\|WP_024958457.1\|4120118_4121705_+\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_LT906480.1\|WP_024958461.1\|4126594_4127500_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176161
NZ_LT906480.1\|WP_024958465.1\|4136313_4137612_-\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NZ_LT906480.1\|WP_012481209.1\|4139146_4140478_-\|O-antigen-ligase-family-protein	unknown	unknown	gnl\|CDD\|225844
NZ_LT906480.1\|WP_005410967.1\|4141589_4141787_-\|zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|226826
NZ_LT906480.1\|WP_005410960.1\|4132769_4133417_+\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_LT906480.1\|WP_024958464.1\|4134879_4136097_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129987

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_005410945.1\|4115948_4116923_+\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_LT906480.1\|WP_024958459.1\|4123973_4124552_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	2.3831e-93
NZ_LT906480.1\|WP_005410957.1\|4127658_4130820_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_LT906480.1\|WP_005414408.1\|4122555_4123974_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_LT906480.1\|WP_033835631.1\|4119030_4120122_+\|threonine-dehydratase	gnl\|CDD\|236339	PRK08813, PRK08813, threonine dehydratase; Provisional.	0
NZ_LT906480.1\|WP_005410964.1\|4137672_4138590_+\|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase	gnl\|CDD\|181542	PRK08733, PRK08733, LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferase.	0
NZ_LT906480.1\|WP_005410961.1\|4133433_4134792_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.66583e-106
NZ_LT906480.1\|WP_024958462.1\|4130824_4131955_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.84244e-60
NZ_LT906480.1\|WP_024958458.1\|4121715_4122495_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	6.59206e-22
NZ_LT906480.1\|WP_024958467.1\|4140458_4141574_-\|glycosyltransferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	4.24872e-48
NZ_LT906480.1\|WP_024958816.1\|4116962_4118699_+\|acetolactate-synthase-2-catalytic-subunit	gnl\|CDD\|181601	PRK08978, PRK08978, acetolactate synthase 2 catalytic subunit; Reviewed.	0
NZ_LT906480.1\|WP_024958817.1\|4118682_4118934_+\|acetolactate-synthase	gnl\|CDD\|226486	COG3978, COG3978, Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown].	6.91919e-23
NZ_LT906480.1\|WP_024958460.1\|4124541_4125603_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|234832	PRK00772, PRK00772, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_LT906480.1\|WP_024958457.1\|4120118_4121705_+\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_LT906480.1\|WP_024958461.1\|4126594_4127500_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176161	cd08472, PBP2_CrgA_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 3. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.65202e-95
NZ_LT906480.1\|WP_024958465.1\|4136313_4137612_-\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	0
NZ_LT906480.1\|WP_012481209.1\|4139146_4140478_-\|O-antigen-ligase-family-protein	gnl\|CDD\|225844	COG3307, RfaL, Lipid A core - O-antigen ligase and related enzymes [Cell envelope biogenesis, outer membrane].	2.3293e-19
NZ_LT906480.1\|WP_005410967.1\|4141589_4141787_-\|zinc-finger-domain-containing-protein	gnl\|CDD\|226826	COG4391, COG4391, Uncharacterized protein conserved in bacteria [Function unknown].	3.15077e-15
NZ_LT906480.1\|WP_005410960.1\|4132769_4133417_+\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	1.35392e-64
NZ_LT906480.1\|WP_024958464.1\|4134879_4136097_-\|hypothetical-protein	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	9.92284e-08

>NZ_LT906480.1|WP_024958461.1|4126594_4127500_+|LysR-family-transcriptional-regulator
MDRIDRFRIFTRVVECASFTRAADQLGLPRSTVSAAIAELEQRLGTRLLQRSTRRVSTTHDGDVFHARCLRLIAEVEDAESLFRQDDAQPVGLLKIDVPSRIGRRIIAPALPDFFARHPQVEVDLGMTDRAVNLIEDGCDAVLRVGQLGDSSLVARTLGQLDFVNVAAPAYMREYGVPQQPADLQQHRAVNYASPTTARVEPWEWQEGTQLRTLPMPGWVRVNSAEASIACCVAGLGLLQIPRYDVQAELQSGALVEVMPQYVAQPLPVTLLQPHRQHRAQRVQVFIEWLLPVLRSGLQLQ
>NZ_LT906480.1|WP_024958460.1|4124541_4125603_+|3-isopropylmalate-dehydrogenase
MHAEIVVLPGDGIGPEVAAAAVAVLKAVAERFNHTFTFSEHDIGGIAIDRHGEPLSASTLTACQAANAVLLGAVGGPKWSDPNAKVRPEQGLLAIRKALGLYANLRPVRTHEAALHASPIKAELLQGVDFVVVRELTGGIYFGDKTRNADSASDLCRYTVAEIERVLRSAFRLARQRRGKVTSVDKANVLETSRLWRDVAARIGREEFPDVALEHQLVDSMAMHLLAKPREYDVIVTENMFGDILTDEASMLAGSLGLLPSASLGEPGAVGIYEPIHGSAPDIAGKGIANPYATIFSAAMLLRHSLGLETEAAAVEAAVHAVLDDGVFTADLAAKGQAVSTAAATDAVLAKLN
>NZ_LT906480.1|WP_024958459.1|4123973_4124552_+|3-isopropylmalate-dehydratase-small-subunit
MAGFRTLTSASVVLRQTNIDTDQIIPARFLSTTERAGLGRNAFNDWRWQADGSPVADFAFNQPHNAGRSVLLAGRNFGCGSSREHAPWALTDLGLRAIVSSEIADIFRGNSLKNGLLPIVLDEADVQALMQRPDDELTIDVAARELRTPDGRVYSFPLDGFSQTCLLEGVDQLGYLLGRVPEIERYESEHAR
>NZ_LT906480.1|WP_005414408.1|4122555_4123974_+|3-isopropylmalate-dehydratase-large-subunit
MTSAPRTLYDKLWDAHVVVPETDSAPAVLYIDLHLIHEVTSPQAFTELRERGLSPRRPDRTKATMDHSTPTLPPAADGTLPYASAASEAQVATLARNCAEHGIELFDMASDNRGIVHVIAPEQGFTQPGMTIVCGDSHTSTHGAFGSLAFGIGTSEVGHVLATQCLLQRKAKTFAITVDGPLAPGVGAKDVVLHIIGVIGVNGGTGHVIEFRGSTIEAMDMEQRMTLCNMSIEAGARAGMVAPDQVTFDFVAATPRGPKGADFDAAVARWQQLRSDDGARFDSEVHIDAADIRPTLTWGTHPGTAIAVDAPIPAANDAAAQKGLDYMHFQAGKALAGTPVDVVFVGSCTNGRLSDMREVAQVLRGRRVADRVRMLVVPGSEIVKREAEAEGIHEIVRAAGAEWREPGCSMCIAMNGDLVAPGQLAVSTSNRNFEGRQGPGSRTLLASPMSAAWAAVNGHVADTRELFAQEVA
>NZ_LT906480.1|WP_024958458.1|4121715_4122495_+|class-I-SAM-dependent-methyltransferase
MSAFDTFTPASAAGQQWNAQDYAIDAGFVPLLGGAVSRLLDPRAGERILDLGCGDGVLSTELALGGARIHGVDASPELVVAARARGVDAQVMDGHALSFDSEFDAVFSNAALHWMTTPDRVLEGVRRALRPGGRFVAEFGGHGNVATIIAAVQAARVAHGHGASTFQWYFPTADAYADRLRQHGFQVQLIECTPRPTALPTGVAGWLRVFAAPLLDDLPAEARATVREAATALLAELPRNAAGQPLADYVRLRVLARRR
>NZ_LT906480.1|WP_024958457.1|4120118_4121705_+|2-isopropylmalate-synthase
MTTIERITTPRIRIFDTTLRDGEQSPGCSMSPPQKLVMARALDELGVDIIETGFPASSQSDREAMALIGRELRRPSLTLAVLSRCLQADIETSARALEAAANPRLHVFLSTSPLHREHKLRMTREQVLESVRKHVSLARSYINDVEFSAEDATRTELDYLIEVARVAIAAGATTINLPDTVGFTTPEEIRAMFQQVIAGVADVPNAANVIFSAHCHNDLGLAVANSLAAIEGGARQVECTINGIGERAGNCSLEEIAMVLKVRQAFYEQDSSINTPRIVGTSQLLQRLVGMPVQRNKAIVGANAFAHESGIHQHGMLRHRGTYEIMRPEDVGWEDSQMVLGRHSGRAAVEARLRALGFWLDEDELKLVFEQFKGLCEQQRVVTDADLQTLMQGGSNAQGYRLASMTISDVGSRANALVELSDPDGNRVAETAQGDGPVDALFGALSAATGVQLMLDSYHVHSVGIGADARGEANLSVRHEGVEYDGTGTSKDIIEASALAWLDVANRLLRQRQATAHSNTDVPTPATA
>NZ_LT906480.1|WP_033835631.1|4119030_4120122_+|threonine-dehydratase
MPAADTSQESDVGDVSVADVLAAQARLRRFLPPTPLHHAERFGTWLKLENLQRTGSYKVRGALNALLAGRERGDTRPVICASAGNHAQGVAWAAYRLDVPAITVMPHGAPATKIAGVAHWGATVRQHGNSYDEAYAFAVELAQRHGYRFLSAFDDADVIAGQGTVGIELAAHAPDVVIVPIGGGGLASGVALALKSQGVRVVGAQVEGVDSMARAIRGDVREIAPVASLADGVRVKIPGFLTRRLCTSLLDDVVIVREAELRETLVRLALEEHIIAEGAGALALAAGRRVAGRRKCAVVSGGNIDAGVLAGLLTDIRPRPPRKPRRRRSETPRSPAKASAPPSPMPSPSHLQAATPAVEEISL
>NZ_LT906480.1|WP_024958817.1|4118682_4118934_+|acetolactate-synthase
MQYRLDLVLHPAEGALLRVIGMAERRGFAPRAISGAPVASDDGRWHLQLVVDGQRPAETLCRQIEKIYDCVSVQVTAVEGVSP
>NZ_LT906480.1|WP_024958816.1|4116962_4118699_+|acetolactate-synthase-2-catalytic-subunit
MNSSTHRSAPPNGARWLTQALEAEGVRTLFGYPGGTIMPFYDALVDSSLKHILVRHEQGAALAANGFARASNQVGVCVATSGPGASNLVTGIADAMLDSVPMVCITGQVGTPLLGTDAFQELDVFGLTMPIVKHSWLVRSVDDLPRVVADAFRIAREGRPGPVLIDLPKDVQLADASHLPAHVPSSVEPPPAPAEAAIAEAIAALAAAEKPVVYAGGGIALGDAVQDLRDFVEASAIPTVMTLRGLGALPAHHPQSLGMLGMHGTRAANMAVQESDLLLVLGARFDDRATGKLAEFAPFARVVHIDADAYEISKLRTADIAVPGNVGHAIRALRAAFPSPRAHQDVWRKRCAQHRDRFAARYDAPGQHIYAPALLKRLSELAPADAVIACDVGQHQMWVAQHCRFNHPRNHLTSGALGTMGFGLPAAMGAQFACPERTVVLVSGDGSFMMNVQELATIARCRLPVKIVLLDNSSLGMVRQWQELFFAERYSEIDLSDNPDFVALAQVFGIAGTRIDNRDDVEGGLAALLAEPGPALLHVAIDARANVWPLVPPNTANSTMLESNPAHARQETPNAIPA
>NZ_LT906480.1|WP_005410945.1|4115948_4116923_+|ketol-acid-reductoisomerase
MSTNDLPQTKIAVIGYGSQGRAHALNLRESGFDVVVGLRPGGPTEAKAQADGFTVIAPAEAVKDADLVAVLTPDMVQKKLYNDVLAPNMKQGACLLFAHGLNVHYGMIEPRADLDVVLVAPKGPGALVRREYEIGRGVPCIWAVYQDISGKAAQHAQAYAAGLGGARANLIQTTFKEETETDLFGEQAVLCGGASALVQAGFETLVEAGYQPEIAYYEVLHELKLIVDLFYEGGISRMLEFISETAQYGDYVSGPRVIDAGTKERMKEVLKDIQDGTFTKNWVAEYEAGLPNYNRFKQADLEHPIEKVGKELRAKMVWLQGQAA
>NZ_LT906480.1|WP_005410957.1|4127658_4130820_-|efflux-RND-transporter-permease-subunit
MRRFNLSEWALANRPLVLFAMLAFALIGAWSYKHLGQSEDPPFTFKAMVVRTLWPGATAEQVSRQVTEPIEKALMNTGEYEFIRSYSRPGESQVIFMARDSLRSRQIPDLWYQVRKRVGDIRATLPREIVGPFFNDEFGDTYGNIYALTGKGFDYAVMRDYADRIQLELQRVPDVGKIDLVGLQDEKVWIELSNTRLATLGVSMQQVQQALADQNAVTGTSFFETATDRVQLRVTGQFNDIEAIRQFPIRAGDRTVHLGDIAEVKRGFADPASPKMRFMGEEAIGLAVAMKDGGDILKLGANLDAEFERLQKTLPAGMQLRKVSDQPQSVEESVGEFVQVLTEAVVIVLLVSFFSLGLRTGLVVGVTIPLVLAMTFFVMHYFDIGLHKISLGALVLALGLLVDDAIIAVEMMATKMEQGYDRLRAASFAWESTAFPMLTGTLITAAGFLPIATAASSTGEYTRSLFQVVTIALVVSWIAAVLFIPYLGDKMLPDLFNPQPPKPGSVSARWHAKRQQWADRYPALANLIAPPQHGHDHDPYQRPFYRSFRRFLDGCLRHRWWVIAATIALFVFSLMMFRFVPQQFFPDSTRPELMVDIELAEGASLRSTQAQAEKLEKLLSSREGIANYVSYVGTGSPRFYLPLDQQLPATNFAQFVVLAKDIKARESTRDWLLHEVIPKFPDVQMRVTRLENGPPVGYPVQMRISGEHIEKVQAIARQVEAKVRENPHVMNVNLDWSEPSKVVRLVIDQERARALGVSSAQVSQFLSSSLAGQSVSVYREGNRQIEMLLRGPADERNQLELLSSLSMPTANGGSITLSQVATMEYGFEDGIIWHRNRLPTVTVRADISDGMQPLDVVHQILPTLDGIRAELPNGYLLETGGTVEDSARGQNSIKAGMPLFLVVVATLLMLQLRSFSRAAMVLVTAPLGIIGATLFLLLFRAPFGFVALLGTIALAGMIMRNSVILIDQIQQDIDAGHDRWHSIIDATVRRFRPIVLTALAAVLAMIPLSRSAFYGSMAISIMGGLIVGTVLTLVFLPALYAAWFRVKPDESGA
>NZ_LT906480.1|WP_024958462.1|4130824_4131955_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKIVRWMGGMVWVAALAACSGQEQAPQAAVPVLVVHPGEQAGQAPAAFPGTVRARQESPLSFRVGGNLVKRHVDAGQRVKKGDVLAELDVADFALQARASQAQLAAAEADLVRARDDLKRYQVLADQQLVSRSQLDQQSAAFKAAQGQANAARANLDVLRNQADYAQLRAPADGVIASREAEAGQVVSAGQTIFNLAADGGREVLIDLPEATIRDYAVGQPVEVELWNRPGQRLPGTIREIAAAADPQARTYATRVSLAADALADVELGQSARVYSSAGRHGTLQLPLGALQRGANGAASVWVVDPANSTLKAASVTTGAFGSETVPVLSGVNAGDWVVAAGGHLLRAGQPVIAVDRQNRPVLKPATPAAAAKAKE
>NZ_LT906480.1|WP_005410960.1|4132769_4133417_+|protein-L-isoaspartate-O-methyltransferase
MTIDYAHARELMVEQQIRPWDVLDIKVLDVLARLPREAFVADAHRALAYADVELPIGHGQKMMKPVIEGRTLQALDLQPGDEVLEIGTGSGFLSACIGALARDVLSLEIDPELATAARARLDASGLGTNVRVEVADALSWQTERRFDVICVTGAVDVVPSQFASWLRPGGRLFVIHGRSPAMEALLVKADGSTESLFETDIDYLRGAAPAPQFHL
>NZ_LT906480.1|WP_005410961.1|4133433_4134792_+|TolC-family-outer-membrane-protein
MIRRSLAVALATALLPLSAHAADLLQVYEMARNGDPQLSAAESTRLVDKEGAVQARAALLPQINGQATLNRTRSEPNADINSGSFTNKRRNYTIDGSQTLFNWTQINNLRSQRELSKAADFTLESANDSLIVRTSAAYFNVLVAIESLNAAQTNEAAAKKQFDFADKRLEVGLAPITDVHEARAQYDQARANTIVAQNTLADNYQALTELTGQPVVNLRGLPADFRPEVPANRGNIDELVHQATTQNPALKAQELKVSAAEAGVQAARGGHYPTLSLGGSWGKTATWGDSTGSGSLSPDARTNSIGLTLNVPIFAGGATQSGVRQALAQRDIAQDGYEQQKRALDRNTRNAYQTLVQGISEVEARRLAVVSAQSAYDASQVGLEVGTRTVLDVIQNQRILFSAQLDYAQARYTFLQNRLLLSQSLGALDVAELQDVNRLLTQDAGNPATTTH
>NZ_LT906480.1|WP_024958464.1|4134879_4136097_-|hypothetical-protein
MDSDSSPGIDEPGYGDRLVVVALTLLLGGGVVALVGQHTAAQAGPAIVLSLLLAALGTGPLLYCLHVLNQQRPAADGLHGVVRDCWGGVPAVLLGGALLLELVVTAAGVAQSVANHLHVLLAGCGIEASNGMPGQLMAAASLLLLAVVGLLRPHRVVLVACVLLTVKVGAGLLLLVLAARHVHYAYWIPWLPPATAPYRFGIGGVLAASVPLYGVFATVGLALGFPGIGRQARARPPLLPACVLLAMVLLIVLAALQAGLVEFPALASTRPLSVALQHHPQLYWVMPLLPLAGVAGLVALILVLLMLAAQVAMQLWPTAGDRSLEFRERLVPVAVVLPAALLALWAPMGSLPVLPGPATLLVMGAVCVAVLRGRAQRSRALPVLAPVAIALCLLAAVERMRVWPG
>NZ_LT906480.1|WP_024958465.1|4136313_4137612_-|3-deoxy-D-manno-octulosonic-acid-transferase
MRKDPVEWILRGLYSVVLYILLPITVYHLVWRGFRVREYFRRWDERYASYPQPTGQPRVWLHAVSVGEVNAAAPLVNALRKERPDIRWVITTITPTGSERVRALWGDALDHVYLPYDVPGSVNRFLGHFQPSLALILETELWPNMLFGCRDRGIPVYILNARLSARSLRGYRLLAALIRRALRTVTCVAAQSQDDAERFVQLGAAPEQVQALGNLKFDITTPDVQGFVEQFHARVPARRPVWIAASTHDGEEQAVIDLHRRLRRQHPDLLLLWAPRHPERFPKVEALAREQGWNVATRRAKQWPEAGTDVFVIDTLGELMPFYACAQVAFVGGSLQPIGGHNLLEPAAMGTAAVTGPHLHNFSEISRRMREAGALLIGEDVQAVGELLQHLLEDPQAREDMARAGCTLISNGRGALQRTLALVGPHLPPPCR
>NZ_LT906480.1|WP_005410964.1|4137672_4138590_+|LpxL/LpxP-family-Kdo(2)-lipid-IV(A)-lauroyl/palmitoleoyl-acyltransferase
MSDATTAVRPSLRDPRNWPMFAAMLGAFAIARLPWMLQRALGRGVGWITWRLLGSRRRAAEVNLQLCFPEKDEAWRQRLVRDSFDALGVGVFECIRAWWGSIDSIRPQVQIEGLEHLRQMQAEGRGVLLVSGHFMTLEMCGRLLCDYVDLSGMYRKHKNPVYEWAVKFGRLRYAKAMFANEDIRATVRHLKKGGFLWYAPDQDMRGKDTVFVPFFGHTASTITATHQLARMTGCAVIPYFHRREGGKYFLKIGAPLENFPSDDVEADTTRVNQAIEEMVREAPDQYLWIHRRFKRQPGGRSDFYK
>NZ_LT906480.1|WP_012481209.1|4139146_4140478_-|O-antigen-ligase-family-protein
MPTSPADPAVIVRDDRAGRWAPWWVLAYVAMWPLPGIAETVLGLGALYAAARMVTRRLQRRPHLLSTAAWALTSILFLGYWLPQAFSAFDAIDPAASWTKAAAGLRYLPFMWLVAIAVATPERRRLTFAGLALITGAWTLDALVQAVAGTSPWFWSLEHLKLAVSGHALCPADEAALADRLSGALGPCNLKFGQVLASLSPFLLLPAARRFGNTGWLLAAAALGSVLLLAGSRASWITFALVLAYSGVRQFGWKRLAALALVAVLGAGALTASVPQLRERFARTAMALDGGERGVDEALSGRARIWEAAACMIEEHPINGVGARGFRDAYPACVAEDGPAVWGNAPALHAHQIVLEILAETGVIGLLLWLAAVAQAWRAWRYAPAMARERARPAMLALAVTVFPLNTHLAFYSAFWGGLTVLLAALFAGSLLARDADDTPTAV
>NZ_LT906480.1|WP_024958467.1|4140458_4141574_-|glycosyltransferase
MRRLTVVQLLPALHSGGVERSTLEIAAALVAAGHRALVVSAGGRLVQPLLDSGAEHLTLDIGRKSLLTLRHLPTLRRLFAEVGADIVHARSRLPAWLGLYAIRALPAAQRPHWVTTVHGLNSPSRYSAVMTSGERVICVSNTVRDYVQRHYPTVPEQALQVIPRGVDVAQFPRVARADRRPRMALAAEYPWLAQVEGPLLLLPGRGTRLKGHAYALQLLADMRAAGVPAQLWMLGTDEPGREAYVADLRRQAAALGVAEAVHISTPTARIAQAYAASDLVLQVSDKPEAFGRTVVEALSVGRPVLGWDHGGVGELLRQLQPAGAVPLGDARALGERALALLAQPPSLPTRIPFTLQAMQRDTLRLYADLAG
>NZ_LT906480.1|WP_005410967.1|4141589_4141787_-|zinc-finger-domain-containing-protein
MSHTATAPANAEKRYTVHRSDLPLSCPTPEMALWNSHPRVYLPIEDEPNGEAQCPYCGSVFVLAD

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Crispr_ID: NZ_LT906480_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_11

4257630-4257734

Orphan

Consensus_repeat	Method
GCGTGCGGACCAACGGTCCGCACCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_11

>merge|NZ_LT906480|11|4257630-4257734|CRISPRCasFinder
GCGTGCGGACCAACGGTCCGCACCCACCCGGGAAGAGGTCAGCAGCTACCGGTAGCGCCGGGCCATGCCCGGCGGAAGCGTGCGGACCAACGGTCCGCACCCACC

>NZ_LT906480|11|11|4257630-4257734|CRISPRCasFinder
GCGTGCGGACCAACGGTCCGCACCCACC	CGGGAAGAGGTCAGCAGCTACCGGTAGCGCCGGGCCATGCCCGGCGGAA
GCGTGCGGACCAACGGTCCGCACCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_005411069.1\|4261472_4262690_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_LT906480.1\|WP_024957045.1\|4255299_4257477_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_LT906480.1\|WP_005411065.1\|4257756_4258767_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_LT906480.1\|WP_024957041.1\|4248355_4250173_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_LT906480.1\|WP_024957046.1\|4262790_4264059_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_LT906480.1\|WP_012481291.1\|4264055_4265201_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_LT906480.1\|WP_005411073.1\|4267423_4268536_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_LT906480.1\|WP_005411066.1\|4258784_4259495_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_LT906480.1\|WP_024957040.1\|4246402_4247914_-\|response-regulator	unknown	unknown	gnl\|CDD\|237526
NZ_LT906480.1\|WP_005411061.1\|4252294_4253200_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_LT906480.1\|WP_024957049.1\|4268532_4270608_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_LT906480.1\|WP_154699834.1\|4246171_4246327_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957044.1\|4254463_4255054_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_LT906480.1\|WP_005411067.1\|4259482_4259761_-\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_LT906480.1\|WP_024957043.1\|4253210_4254446_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005411057.1\|4247918_4248359_-\|response-regulator	unknown	unknown	gnl\|CDD\|381108
NZ_LT906480.1\|WP_024957048.1\|4266192_4267287_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_LT906480.1\|WP_024957042.1\|4250961_4252005_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_LT906480.1\|WP_005411068.1\|4260112_4261171_+\|lipid-A-deacylase-LpxR-family-protein	unknown	unknown	gnl\|CDD\|378338
NZ_LT906480.1\|WP_005411059.1\|4250406_4250790_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_005411069.1\|4261472_4262690_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.03159e-149
NZ_LT906480.1\|WP_024957045.1\|4255299_4257477_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_LT906480.1\|WP_005411065.1\|4257756_4258767_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_LT906480.1\|WP_024957041.1\|4248355_4250173_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	6.1189e-57
NZ_LT906480.1\|WP_024957046.1\|4262790_4264059_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	1.86127e-51
NZ_LT906480.1\|WP_012481291.1\|4264055_4265201_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.42047e-138
NZ_LT906480.1\|WP_024957049.1\|4268532_4270608_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LT906480.1\|WP_005411066.1\|4258784_4259495_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	8.74975e-140
NZ_LT906480.1\|WP_005411067.1\|4259482_4259761_-\|YbeD-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_LT906480.1\|WP_005411061.1\|4252294_4253200_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_LT906480.1\|WP_024957044.1\|4254463_4255054_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	6.2609e-62
NZ_LT906480.1\|WP_024957040.1\|4246402_4247914_-\|response-regulator	gnl\|CDD\|237526	PRK13837, PRK13837, two-component system VirA-like sensor kinase.	2.59549e-47
NZ_LT906480.1\|WP_005411073.1\|4267423_4268536_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
NZ_LT906480.1\|WP_005411057.1\|4247918_4248359_-\|response-regulator	gnl\|CDD\|381108	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains. This family is composed of response regulators (RRs) that are members of phytochrome-associated, light-sensing two-component signal transduction pathways such as Synechocystis sp. Rcp1, Tolypothrix sp. RcpA, and Agrobacterium tumefaciens bacteriophytochrome response regulator AtBRR. They are stand-alone RRs containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. Also included in this family us Methanosaeta harundinacea methanogenesis regulatory protein FilR2, also a stand-alone RR. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.4568e-62
NZ_LT906480.1\|WP_024957048.1\|4266192_4267287_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.43128e-141
NZ_LT906480.1\|WP_024957042.1\|4250961_4252005_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	7.47061e-133
NZ_LT906480.1\|WP_005411068.1\|4260112_4261171_+\|lipid-A-deacylase-LpxR-family-protein	gnl\|CDD\|378338	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219). This domain, found in various hypothetical bacterial proteins, has no known function.	1.33614e-109
NZ_LT906480.1\|WP_005411059.1\|4250406_4250790_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.08321e-17

>NZ_LT906480.1|WP_024957045.1|4255299_4257477_-|carboxy-terminal-processing-peptidase
MKFKAPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPPFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>NZ_LT906480.1|WP_024957044.1|4254463_4255054_-|DUF2242-domain-containing-protein
MRASRLSSVAVALASALILSACGGRAADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPAEAGKPVPPVVTTPEPAPASTDQD
>NZ_LT906480.1|WP_024957043.1|4253210_4254446_-|hypothetical-protein
MGVALLLPALGAAATPLDCTQGLLQRLGWHFETRAIGAPQVHGGPVCTRASLPEAQAAGDLRVQWPADMPAAARKALLQQVLDDPATVCAYAFQLGAATQRAAAALQGNAGFRFSGLQLGWIGFGLHGARAQGWQRKRSFGRGFVPIKGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVYDKGMLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYHIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQLRHCAATGRPGSLTLDPN
>NZ_LT906480.1|WP_005411061.1|4252294_4253200_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRVVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSIRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEAAVVEQIAPLLRTLAPAEDRGWGRVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>NZ_LT906480.1|WP_024957042.1|4250961_4252005_+|oxidoreductase
MRPDLQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDAVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEAVLAAARDAGRIATVFQNRRFDADFLTLQALLADGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRGTVDNLPGDYRRLYAQFAAAMHGDGEATVDPVQALQLMRLLQAGMDSAREGRRIALG
>NZ_LT906480.1|WP_005411059.1|4250406_4250790_-|BON-domain-containing-protein
MSNTTRTLIASALTLGLALSSSAAFAKDPAAKSPPTSAHPATHADRHDSNEPVTDTWITTKVKADLLASSNVPGTEIKVETVNGVVSLSGAVASQAEKDKAVTTAKGIKGVTRVDAAALKVSAAAKR
>NZ_LT906480.1|WP_024957041.1|4248355_4250173_-|PAS-domain-containing-protein
MALVFSDDIWDRWRLPALALAAAAIIVVPWLTLRKLQQDNEQAMAWVNHTQAVGVALQQLQADVRDVESAALTLSKGVDAPGLRERMAAANDIPGRLAELGRMTRDNPDQLIRIGRIESMLEGRMALARELARSEPNSDQRELVKDLSTRYPIRGLVEELQASEQRLLTLRAEQAARQRKQTELVSWSSLVIQLGLLGLVLWLLQRQIGRRLHAERQSLRSAARAASVLQTVREPIVLLDRDLRVQLHNPAFAELYGLQDERADGLLLESVGDGAWKDAVVRQRLSDVLLRGRELWDFEHEQRTADGMARYMLLNARRMPLPDTDDEVVLLTVSDVTMQRAVQLRVEELNRQLEGKVAQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLSRHLGDAADDKSRHYLDVISSSARRMAALIDDLLVYSRLGRAAMRQQAVDMQSLVADTRAMLDSNLQAEAENSGHVHQVEWSIAPLPIVVGDENMIRQVWLNLLGNAVKYSGNREPAKIRVDYQPQPDGGHQFTVSDNGAGFDMAYAGKLFGVFQRLHKASDYPGTGIGLASVRRVLTRHGGRIWAEAEPDVGATFHFYLPPAIDADKQGPSA
>NZ_LT906480.1|WP_005411057.1|4247918_4248359_-|response-regulator
MTTLRTILLAEDSPADAEMAIDALEEARLANPIVHVEDGVEVMDYLLRRGAFANREEGLPAVLLLDIKMPRMDGLEVLRQIREHEELKRLPVVILSSSREESDLARSWDMGVNAYVVKPVDVDQFFGAVQTLGKFWALINQAPELE
>NZ_LT906480.1|WP_024957040.1|4246402_4247914_-|response-regulator
MPLTGPALGALRILLVEDSPEDAELMSEQMLDAGLEARFERVESEAELRQALAAFQPDIVLSDLSMPGFSGDDALRIVRETSPEIPFIFVSGTMGEENAVAALQKGANDYIIKHQPARLPSAVARAIRDARNAIERARVETELMRAQRLESLSLLAAGLSHDLRNILQPLLIMPDLLKARTDDPQLHHLADVIAECGRRGHEMAESMLSFVRGSRKPSERIEIDGLFDAVALLLRSNVPDAVRLELQVQDEGLVVDANYTELQQVMLNLALNAIQAMPNGGRLSLTASHAGHRDGVDWMHIRVADEGIGMDADTLSHLFNPFFTTKADGTGLGLISCKRIVEGAGGSIHVSSQPGQGTCFELRLPMHDAIDGSEPIEQLVALGSGQSILVVDGEATRLSLLGNALSSQGYQLQLASDGPAALRWMQQEAMPALVIADAGSKLLPASQLLGEMATLGYRGPALVLEDPAVPVAADAFPDGVEVHVLHKPLQMQQVFRAVAEALG
>NZ_LT906480.1|WP_154699834.1|4246171_4246327_+|hypothetical-protein
MIPPHWDAGQRPALPGISLRFGRCAEDQLHLQRLEQAVDALPRFSWETAER
>NZ_LT906480.1|WP_005411065.1|4257756_4258767_-|lipoyl-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>NZ_LT906480.1|WP_005411066.1|4258784_4259495_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>NZ_LT906480.1|WP_005411067.1|4259482_4259761_-|YbeD-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_LT906480.1|WP_005411068.1|4260112_4261171_+|lipid-A-deacylase-LpxR-family-protein
MRSVAALGLAGLLASALPLAAQAAEQCGPDAMRDHPPQINFRVDNDLFGGRHQDQGYTNGALLTLVSPNLVDYTDDPCLPRMARWVNQYLEGLHPGRFEQQNMIFSIGQGIFTPTDFSRRDLIEDDRPYAGVLIANFGFNARSGDRLQTTQLTLGVVGPWAQGKQVQNAVHEVLGDEKFKGWDNQLHNEPLFMLTHERMRRWPGDASVNADGWGWDAISHYGGSIGNLETKANLGGEVRFGWKLPDDFGSTPLRPAGENTAPTRGGRPNGWSWHLFATSDAAWVIRDITLDGNTFRNSHSVDKRHVVAYGGYGVAVMYGRWKFAAARYHSTREFNGQREAPVFGSFTISRSL
>NZ_LT906480.1|WP_005411069.1|4261472_4262690_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_LT906480.1|WP_024957046.1|4262790_4264059_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPMPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRNSAPAPAVVASTAPRAVAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>NZ_LT906480.1|WP_012481291.1|4264055_4265201_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_LT906480.1|WP_024957048.1|4266192_4267287_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSLLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_LT906480.1|WP_005411073.1|4267423_4268536_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_LT906480.1|WP_024957049.1|4268532_4270608_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTAAPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPAQVGAPTPEPAPAPQPGTPAAAAVPATPRPTVAEPAR

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Crispr_ID: NZ_LT906480_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_12

4261161-4261261

Orphan

Consensus_repeat	Method
GCTCGCTGTAAGCGAGGGGCTGAGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_12

>merge|NZ_LT906480|12|4261161-4261261|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGTGAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATGGCTCGCTGTAAGCGAGGGGCTGAGGGT

>NZ_LT906480|12|12|4261161-4261261|CRISPRCasFinder
GCTCGCTGTAAGCGAGGGGCTGAGGGT	GAAGCGGGTAGGTGCCGACCGTTGGTCGGCACACCGGTTATTGCATG
GCTCGCTGTAAGCGAGGGGCTGAGGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_005411069.1\|4261472_4262690_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_LT906480.1\|WP_024957045.1\|4255299_4257477_-\|carboxy-terminal-processing-peptidase	unknown	unknown	gnl\|CDD\|236873
NZ_LT906480.1\|WP_005411066.1\|4258784_4259495_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_LT906480.1\|WP_024957041.1\|4248355_4250173_-\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226702
NZ_LT906480.1\|WP_012481291.1\|4264055_4265201_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_LT906480.1\|WP_024957050.1\|4271093_4272275_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_LT906480.1\|WP_005411073.1\|4267423_4268536_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_LT906480.1\|WP_005411065.1\|4257756_4258767_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
NZ_LT906480.1\|WP_005411067.1\|4259482_4259761_-\|YbeD-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_LT906480.1\|WP_005411078.1\|4273726_4274665_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_LT906480.1\|WP_005411061.1\|4252294_4253200_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_LT906480.1\|WP_005411077.1\|4272396_4273443_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_LT906480.1\|WP_024957044.1\|4254463_4255054_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_LT906480.1\|WP_024957049.1\|4268532_4270608_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_LT906480.1\|WP_024957043.1\|4253210_4254446_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957046.1\|4262790_4264059_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_LT906480.1\|WP_024957048.1\|4266192_4267287_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_LT906480.1\|WP_005411075.1\|4270611_4271097_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_LT906480.1\|WP_024957042.1\|4250961_4252005_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_LT906480.1\|WP_005411059.1\|4250406_4250790_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_005411069.1\|4261472_4262690_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	7.03159e-149
NZ_LT906480.1\|WP_024957045.1\|4255299_4257477_-\|carboxy-terminal-processing-peptidase	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_LT906480.1\|WP_005411066.1\|4258784_4259495_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	8.74975e-140
NZ_LT906480.1\|WP_024957041.1\|4248355_4250173_-\|PAS-domain-containing-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	6.1189e-57
NZ_LT906480.1\|WP_012481291.1\|4264055_4265201_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	5.42047e-138
NZ_LT906480.1\|WP_005411077.1\|4272396_4273443_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_LT906480.1\|WP_024957049.1\|4268532_4270608_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LT906480.1\|WP_005411065.1\|4257756_4258767_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
NZ_LT906480.1\|WP_005411067.1\|4259482_4259761_-\|YbeD-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	1.56476e-63
NZ_LT906480.1\|WP_005411078.1\|4273726_4274665_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116
NZ_LT906480.1\|WP_005411061.1\|4252294_4253200_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_LT906480.1\|WP_024957044.1\|4254463_4255054_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	6.2609e-62
NZ_LT906480.1\|WP_024957050.1\|4271093_4272275_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	5.53714e-87
NZ_LT906480.1\|WP_005411073.1\|4267423_4268536_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
NZ_LT906480.1\|WP_024957046.1\|4262790_4264059_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	1.86127e-51
NZ_LT906480.1\|WP_024957048.1\|4266192_4267287_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.43128e-141
NZ_LT906480.1\|WP_005411075.1\|4270611_4271097_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30
NZ_LT906480.1\|WP_024957042.1\|4250961_4252005_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	7.47061e-133
NZ_LT906480.1\|WP_005411059.1\|4250406_4250790_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.08321e-17

>NZ_LT906480.1|WP_005411067.1|4259482_4259761_-|YbeD-family-protein
MEIKSDNPDHGFQFPGQFELSAMGPANRGLEHELPRLLLAAGIDVVNERISWKHSSNGKYVSVRIVFKAESREQYDLAHQALRDHPEVKWTL
>NZ_LT906480.1|WP_005411066.1|4258784_4259495_-|lipoyl(octanoyl)-transferase-LipB
MDAVADSCPAEAAPEDRAPRPALVRDLGRQAYEPVWRAMQRFTDQRSDTDADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLRLPRLGIGVRDYVCRIEQAIIDTLGEWNIGAERREGAPGVYVGGAKIAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMEAVKPVLLDHLARQFGLLLQHTPELPDLSAAA
>NZ_LT906480.1|WP_005411065.1|4257756_4258767_-|lipoyl-synthase
MTETTARSIPLQIVQGDSPSAAPLQAGVKQLGGDKINRSPVQFADAPVLRKPSWIRVRIPSGNAVQNLKAKLRENRLVTVCEEASCPNIHECFGHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLGQTVADMGLKYVVVTSVDRDDLRDGGAQHFVDCITAIREKSPGTRIEVLTPDFRGKGRMERALEILAQNPPDVFNHNIETVPDLYRNVRPGADYQWSLNLLKNFKAQHPDVPTKSGIMLGLGEDFEQIKATLRDLRAHDVDMITIGQYLQPTAHHHPVLKYWTPEDYKALEDYGYELGFSHVASGPMVRSSYHADVQAKGAGVS
>NZ_LT906480.1|WP_024957045.1|4255299_4257477_-|carboxy-terminal-processing-peptidase
MKFKAPAFLMALALVAPLALAAKADSPALPAAATADQVTTSKLVYGLLSDSRYAYRPRALDEATSKDVFKRYLETLDGGKQYFTQADVARFAPFEANIASAIRGGELEPPFQVFAVYKQRVGERVAYARKLLKQEPDFTTDERFEYDRKKVPWAASSAELDELWRKSVKNDWLRLKLAGKKPDDIRKTLDKRYATLEKSVNELKGEDVFQFFMNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDVVVIREIIAGGPAAVDGTLKPGDRIVGVGQGKSGLVEDVIGWRIDDVVAKIRGAKDTQVKLEFIPAAEGADGKHHTLVLTRQKVRLAEQAAKGETMTIPAANGEPARRIGVIKLPTFYQDFEGRRRNAADYASATRDVAKLLAGFKNDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRNQGVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETSFGKGTVQNIVDLDRWPSGETQRFGQVKLTIAQFFRISGSSTQHKGVVPDLAFPASVDATEFGESTYDNALPWTRIAAVPHTQYGNFAPLLPKLETRHDARIATDKEFQWWNEDVQQFRTEAAKKYISLNEATRRAERERQDTQRKERQVQRKELGLALDPLADDSSDDGLTGNERDIVKDAAREKAAEKRPDPLLRESASILADAVNLLANDRPLSAQVLPQSTGAGRWAD
>NZ_LT906480.1|WP_024957044.1|4254463_4255054_-|DUF2242-domain-containing-protein
MRASRLSSVAVALASALILSACGGRAADSTLLRESFDSGDTFSRTVDGRPGDACEAARRTLLSQGYAIARSDAAQVEGNKNFQPREDDHEQLVLRISCAPRGSQTLVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVTDAEFYRRFFQRLQQYLPAEAGKPVPPVVTTPEPAPASTDQD
>NZ_LT906480.1|WP_024957043.1|4253210_4254446_-|hypothetical-protein
MGVALLLPALGAAATPLDCTQGLLQRLGWHFETRAIGAPQVHGGPVCTRASLPEAQAAGDLRVQWPADMPAAARKALLQQVLDDPATVCAYAFQLGAATQRAAAALQGNAGFRFSGLQLGWIGFGLHGARAQGWQRKRSFGRGFVPIKGNSQALQAFYSGNVRAECGVGRQVAQLATQRELYGDAAFDAGFSAEELSIGTFLALHDTDSILLGAHAGDYFADGKAVRTSAMGRQAFVGVPGFIEHVYDKGMLDDLSNQAENFVVVSVGEEAAQALAAHGGLAWYDQRNAELWALAQDIPRIGRRYFERLLFERDPDLRARLEPRYHATLARMDRLLDDPFYQQFVIYVHPRGIRPIGYHIARLLDRNPRTPFSIDLAVHNLHTTLYRRWREAQLRHCAATGRPGSLTLDPN
>NZ_LT906480.1|WP_005411061.1|4252294_4253200_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGRMGANMAQRLHRGGHRVVGYDPGEGARQRAAEAGLEVVDSLAAAVAALPVPRVVWLMVPAGETVDQTLGQLTPHLAEGDIVIDGGNSNYQDSIRRAKALAEDDLGYVDCGTSGGVWGLQEGYSLMVGGEAAVVEQIAPLLRTLAPAEDRGWGRVGPSGAGHFTKMVHNGIEYGMMQAYAEGFALMERKQEMELDLAQVAEVWRHGSVVRSWLLDLSTEALKRNPSLDGIAPYVEDSGEGRWTVAEAIALDVPAPVITLSLLERLRSRESNSFTDRLLSAMRNEFGGHAIKKS
>NZ_LT906480.1|WP_024957042.1|4250961_4252005_+|oxidoreductase
MRPDLQLALIGYGLAGRVFHAPLIQHTPGLVLHSIVSSQRDTLLRAFSDVHVRATPQEVFDDPAVDAVVIATPNEQHAPLAIAALAAGKHVLVDKPFALDVAEAEAVLAAARDAGRIATVFQNRRFDADFLTLQALLADGTLGDIAECHVHFDRYRPQVRDRWREQDGPGSGLWYDLGPHLLDQMLVLFGWPEAIDADLAVQRDGGSAIDYFHAVLHYPRHRAIVHSGSLVAAPTPHFSVHGSKASWIKHGLDVQEAQLRRGVAPGAPGWGIDPRHGELVRCDAEDNVQRGTVDNLPGDYRRLYAQFAAAMHGDGEATVDPVQALQLMRLLQAGMDSAREGRRIALG
>NZ_LT906480.1|WP_005411059.1|4250406_4250790_-|BON-domain-containing-protein
MSNTTRTLIASALTLGLALSSSAAFAKDPAAKSPPTSAHPATHADRHDSNEPVTDTWITTKVKADLLASSNVPGTEIKVETVNGVVSLSGAVASQAEKDKAVTTAKGIKGVTRVDAAALKVSAAAKR
>NZ_LT906480.1|WP_024957041.1|4248355_4250173_-|PAS-domain-containing-protein
MALVFSDDIWDRWRLPALALAAAAIIVVPWLTLRKLQQDNEQAMAWVNHTQAVGVALQQLQADVRDVESAALTLSKGVDAPGLRERMAAANDIPGRLAELGRMTRDNPDQLIRIGRIESMLEGRMALARELARSEPNSDQRELVKDLSTRYPIRGLVEELQASEQRLLTLRAEQAARQRKQTELVSWSSLVIQLGLLGLVLWLLQRQIGRRLHAERQSLRSAARAASVLQTVREPIVLLDRDLRVQLHNPAFAELYGLQDERADGLLLESVGDGAWKDAVVRQRLSDVLLRGRELWDFEHEQRTADGMARYMLLNARRMPLPDTDDEVVLLTVSDVTMQRAVQLRVEELNRQLEGKVAQVSEVNRELEAFSYSVSHDLRAPLRHVAGFSDKLSRHLGDAADDKSRHYLDVISSSARRMAALIDDLLVYSRLGRAAMRQQAVDMQSLVADTRAMLDSNLQAEAENSGHVHQVEWSIAPLPIVVGDENMIRQVWLNLLGNAVKYSGNREPAKIRVDYQPQPDGGHQFTVSDNGAGFDMAYAGKLFGVFQRLHKASDYPGTGIGLASVRRVLTRHGGRIWAEAEPDVGATFHFYLPPAIDADKQGPSA
>NZ_LT906480.1|WP_005411069.1|4261472_4262690_-|D-alanyl-D-alanine-carboxypeptidase
MNFRSAATALAATLVVGLASAQTPLPTPATPAPAAAAAPATVATPPAPAPSVSKAWVLMDYATGQVLAGENIHEQLAPASITKVMTSYVIAAEVKNGKVRADDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKDSHFVNAHGLTAQGHHSTAYDLALLGRAMVRDYPETYAYNKIKEFQVGNIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGASEKQRADDSLALLNWGFRFFETHRLYEPGKAVAEHKVWKGTTDKVQLGVAQPMLVSVPRGRYNDLKPSIDVPKTLEAPFTAGQQIGTVKVTLDGKVIAEAPLVAVAAVEQAGFFKRLWDSFWMWWESE
>NZ_LT906480.1|WP_024957046.1|4262790_4264059_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNIRWLVPSLIVFALAACSSAPKKPATAGHGGKSSGTLVQGRGSRPAHCPEGSPYAAAKEDLSTRGNYTAGGLYKPGVRDSTPDYIPNVACIPEPEVTAEERSAIGNKSPYVVLGKSYKVLDDTHDYVERGTASYYGAKFHGRLTSNREVYDMYQFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALQPGESNLMAQKPSRRERRAAEAAAATAVASARPMPAPRASTDSDIDRLVNRLPTDGAPARGQPATTRGVASTAPDVAVSSLPPSAPVVRNSAPAPAVVASTAPRAVAPAPVRAAAAAPSLSQQMVGAVMVQVASFSNRDNANRAMGQLSAAGIVGATISDIAAGGRTLFRLRVPASDHASAAELVGRIAGLGLGSPQIVKD
>NZ_LT906480.1|WP_012481291.1|4264055_4265201_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPKSPPSSPQASSTPRQPATKAHGPAEAAPEATAATAPPVDLTPVPFEVARARFIADTAKRYGLKPEQISSVLDQAQVRQPIIAAMSRPAERVKPWNEYRPMFISKARIDGGRAFLAEHRAELDRVQQRTGVPAEVIVAIIGVETSYGKNAGSHRVLDALYTLAFYYPRSGDPAKLEREVRRELFFRDELAKLFELGREEKLDITTLKGSYAGAMGMGQFMPSSYLDYAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGQVAVPATLAPGREEFNPTEWMPTWSLADLAQRGYQPSTPVQPGATATPITLEGSTGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_LT906480.1|WP_024957048.1|4266192_4267287_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSLLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_LT906480.1|WP_005411073.1|4267423_4268536_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_LT906480.1|WP_024957049.1|4268532_4270608_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTAAPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPAQVGAPTPEPAPAPQPGTPAAAAVPATPRPTVAEPAR
>NZ_LT906480.1|WP_005411075.1|4270611_4271097_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_LT906480.1|WP_024957050.1|4271093_4272275_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPAITTPAPVSSPVVPAAGRQQPSSQARTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQPTTPEAQR
>NZ_LT906480.1|WP_005411077.1|4272396_4273443_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_LT906480.1|WP_005411078.1|4273726_4274665_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA

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Crispr_ID: NZ_LT906480_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_13

4278588-4278660

Orphan

Consensus_repeat	Method
ACCAAGGTCGGCACCCACCAGAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_13

>merge|NZ_LT906480|13|4278588-4278660|CRISPRCasFinder
ACCAAGGTCGGCACCCACCAGAGCGCATCATCGCAGCGGGCGAGCACCAACCAAGGTTGGCACCCACCAGAGC

>NZ_LT906480|13|13|4278588-4278660|CRISPRCasFinder
ACCAAGGTCGGCACCCACCAGAGC	GCATCATCGCAGCGGGCGAGCACCA
ACCAAGGTTGGCACCCACCAGAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_024957050.1\|4271093_4272275_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_LT906480.1\|WP_005411086.1\|4280897_4281320_+\|low-affinity-iron-permease-family-protein	unknown	unknown	gnl\|CDD\|377225
NZ_LT906480.1\|WP_005414514.1\|4276466_4278395_-\|M1-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341062
NZ_LT906480.1\|WP_024957053.1\|4280158_4280419_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957049.1\|4268532_4270608_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_LT906480.1\|WP_005411077.1\|4272396_4273443_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_LT906480.1\|WP_005411082.1\|4278665_4279427_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_LT906480.1\|WP_012481298.1\|4281403_4282804_-\|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF	unknown	unknown	gnl\|CDD\|182103
NZ_LT906480.1\|WP_005414521.1\|4289231_4290605_-\|ATP-dependent-protease-ATPase-subunit-HslU	unknown	unknown	gnl\|CDD\|235364
NZ_LT906480.1\|WP_032963570.1\|4274984_4275620_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223620
NZ_LT906480.1\|WP_024957052.1\|4275607_4276339_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957055.1\|4288142_4289135_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_LT906480.1\|WP_005411089.1\|4286032_4287217_-\|multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit-SmeD	unknown	unknown	gnl\|CDD\|184990
NZ_LT906480.1\|WP_005411073.1\|4267423_4268536_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_LT906480.1\|WP_024957054.1\|4287437_4288097_+\|efflux-transporter-SmeDEF-transcriptional-repressor-SmeT	unknown	unknown	gnl\|CDD\|182632
NZ_LT906480.1\|WP_024957048.1\|4266192_4267287_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_LT906480.1\|WP_005411075.1\|4270611_4271097_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_LT906480.1\|WP_005411083.1\|4279507_4279960_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|238612
NZ_LT906480.1\|WP_005411085.1\|4280494_4280830_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212083
NZ_LT906480.1\|WP_005411078.1\|4273726_4274665_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024957050.1\|4271093_4272275_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	5.53714e-87
NZ_LT906480.1\|WP_005411086.1\|4280897_4281320_+\|low-affinity-iron-permease-family-protein	gnl\|CDD\|377225	pfam04120, Iron_permease, Low affinity iron permease.	2.01389e-63
NZ_LT906480.1\|WP_005414514.1\|4276466_4278395_-\|M1-family-metallopeptidase	gnl\|CDD\|341062	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain. This model represents the N-terminal catalytic domain of leukotriene A4 hydrolase (LTA4H; E.C. 3.3.2.6) and the close homolog cold-active aminopeptidase (Colwellia psychrerythraea-type peptidase; ColAP), both members of the aminopeptidase M1 family. LTA4H is a bifunctional enzyme, possessing an aminopeptidase as well as an epoxide hydrolase activity. The two activities occupy different, but overlapping sites. The activity and physiological relevance of the aminopeptidase is poorly understood while the epoxide hydrolase converts leukotriene A4 (LTA4) into leukotriene B4 (LTB4), a potent chemotaxin that is fundamental to the inflammatory response of mammals. It accepts a variety of substrates, including some opioid, di- and tripeptides, as well as chromogenic aminoacyl-p-nitroanilide derivatives. The aminopeptidase activity of LTA4H is possibly involved in the processing of peptides related to inflammation and host defense. Kinetic analysis shows that LTA4H hydrolyzes arginyl tripeptides with high efficiency and specificity, indicating its function as an arginyl aminopeptidase. Thermodynamic characterization using different biophysical methods shows that structurally distinct inhibitors of the LTA4H occupy different regions of the binding site; while some (RB202, ARM1 and SC57461A) bind to the hydrophobic hydrolase side, both bestatin and captopril are located at the hydrophilic peptidase side. LTB4H overexpression is associated with different pathological conditions and diseases such as cystic fibrosis, coronary heart disease, sepsis, shock, connective tissue disease, and chronic obstructive pulmonary disease. It is also overexpressed in certain human cancers, and has been identified as a functionally important target for mediating anticancer properties of resveratrol, a well-known red wine polyphenolic compound with cancer chemopreventive activity.	0
NZ_LT906480.1\|WP_024957049.1\|4268532_4270608_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LT906480.1\|WP_005411077.1\|4272396_4273443_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_LT906480.1\|WP_005411082.1\|4278665_4279427_-\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	5.68803e-138
NZ_LT906480.1\|WP_012481298.1\|4281403_4282804_-\|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF	gnl\|CDD\|182103	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein.	2.77998e-115
NZ_LT906480.1\|WP_005414521.1\|4289231_4290605_-\|ATP-dependent-protease-ATPase-subunit-HslU	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_LT906480.1\|WP_032963570.1\|4274984_4275620_-\|HAD-family-hydrolase	gnl\|CDD\|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	2.14463e-28
NZ_LT906480.1\|WP_024957055.1\|4288142_4289135_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.3723e-61
NZ_LT906480.1\|WP_005411089.1\|4286032_4287217_-\|multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit-SmeD	gnl\|CDD\|184990	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA.	1.69039e-117
NZ_LT906480.1\|WP_005411073.1\|4267423_4268536_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.19066e-144
NZ_LT906480.1\|WP_024957054.1\|4287437_4288097_+\|efflux-transporter-SmeDEF-transcriptional-repressor-SmeT	gnl\|CDD\|182632	PRK10668, PRK10668, DNA-binding transcriptional repressor AcrR; Provisional.	6.86323e-36
NZ_LT906480.1\|WP_024957048.1\|4266192_4267287_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.43128e-141
NZ_LT906480.1\|WP_005411075.1\|4270611_4271097_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	7.1233e-30
NZ_LT906480.1\|WP_005411083.1\|4279507_4279960_+\|nucleoside-deaminase	gnl\|CDD\|238612	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protein synthesis. Other members of the family are guanine deaminases which deaminate guanine to xanthine as part of the utilization of guanine as a nitrogen source.	3.60475e-42
NZ_LT906480.1\|WP_005411085.1\|4280494_4280830_+\|hypothetical-protein	gnl\|CDD\|212083	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain. DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family.	0.00280065
NZ_LT906480.1\|WP_005411078.1\|4273726_4274665_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	1.16177e-116

>NZ_LT906480.1|WP_005414514.1|4276466_4278395_-|M1-family-metallopeptidase
MRNPLMLLPLAVALAAGCSQEAAAPAAAPTAAKAPAAPVNAENRSHDESSYAEPDKVVIKDIALDLKLDFDQKQIGGTATYTLEWKQKDARQLVLDTRELTVSKVEAVAADGARSPLKFELAAADKVFGSKLTIEAPEQPAKVEVTYHTAPTASGLQWLAPSMTEGKKLPFMFSQSQAIHARSWVPLQDTPSVRFTYSAHVVSRPDVMVLMSADNDPKAARDGDYTFKMPQPIPSYLLAIAAGDLVFEPISGRSGVWAEPTMVNKAAKEFEDTEKMIGAAEKLYGEYRWGRYDMLVLPPSFPFGGMENPRLTFATPTVIVGDKSLVSLVAHELAHSWSGNLVTNASWKDIWLNEGFTTYVQGRITEALYGKEMAEMEKQIDQTDLLAEVKDMSPADQALALPPLNERDPDEALSQVAYVKGSWFLEFLEQRFGRETFDPFLRGWFDDHAFQSANTDQFVAYMKKNLLPKNPSAVTEAELKAWLDEPGIPAFAAKAQSRNFSSVDTARIAFASAGTVPSSQVIADWSTQEWVRFIDGLGATQPLDKLATLDKAFHFTGTPNGEIAMRWYPLAIRSGYEQANEGAAAFIERVGRRKLILPIYAELVKTPKGLELAKQAFEKAKPGYHPITTASVQDMLAKAEAK
>NZ_LT906480.1|WP_024957052.1|4275607_4276339_-|hypothetical-protein
MKRLILLTACTLALAACSNPEEERKAQEAAAAAAQAQKEAKAEDVAKQYDMAVAAQDWERARLHGASLLDQYKDTAAAERIAAGFDEVKAKGDAARDLRRMQGLWQYNQIPVGSKGNQVSAQIYSKERVDVDGSGAKPVQLVFRDHPEWKRHAYLVLQAGDFRCPQCTVKVTVDDGKPVPMAAWRPKTDEAIALFITDQKALWKLARKGKSISIEFPIKAGSTRTAVFETGGVDASRMPQWWQ
>NZ_LT906480.1|WP_032963570.1|4274984_4275620_-|HAD-family-hydrolase
MVAVRGATGSAVHALSAIRHWVFDMDGTLTVAVHDFAAIRRALEIAAEEDILDHIAALPDAPAQAKRAWLLDHERALAEDALPAPGAVKLLRALAAAGCRLGILTRNDHALAKLTLEAIGVGALFDDADIIGRDEAVPKPSPDGLQQHLRRWGIGAAHAVMVGDHAYDLECGRAAGAHTVLVNLPENPWPGRADWHFADCRALLAAWQQKG
>NZ_LT906480.1|WP_005411078.1|4273726_4274665_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGQPIPMGTVGSDFGPYREYFEGLGIDLSRVRVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVRGVPGVTLGLVGPDGREGMIQNAQEFHEDGIPFIFDPGQAMPLFNGPELRAFIDQADYVVVNDYESNLLQERTGWDEKEIVSRVKAYITTRGPKGAVIHTPEKSYDIPPAHERRVVDPTGCGDAFRAGLIYGIQKGYDWLTIGRMGNLMGALKVEHPGTQNQRFTFDEFNEQFKQQFGYALGA
>NZ_LT906480.1|WP_005411077.1|4272396_4273443_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRVLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVYLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVQELEISGRNLAEGVPKMIKISSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_LT906480.1|WP_024957050.1|4271093_4272275_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRSGDAASPLRLLAYLALAITLIVLDDQAGWLARLREQANSLVQPVWALAGLPGKLGNQVKDSAASHTQLVTENRELRNQLLLANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVKQRLVLDAGSREGVHVGQAVIDAGGLMGQVISVTGGTSTVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGTITGLRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRIPPELRLQLEETTPGGPATGATVPAGAAPAITTPAPVSSPVVPAAGRQQPSSQARTVAPASSLDPAAPVVPAAGRQQPSSQTRTVAPASSLDPAAPVVPAAGRQPTTPEAQR
>NZ_LT906480.1|WP_005411075.1|4270611_4271097_-|rod-shape-determining-protein-MreD
MSRLRDNPWVLPASLVVALLLGLLPLPALLQPLRPYWLALVLAYWVIETPERVGLGIAFASGVVADLLYGGVLGEQALRLVMLAFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSALVHILVGEPTLPWSYWWAPLLGMGLWPLVFVLLDAVRFGKRGR
>NZ_LT906480.1|WP_024957049.1|4268532_4270608_-|penicillin-binding-protein-2
MIPRRQVKNPHAEAEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDVYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDVTPDKVKDMDATLEGLAKIISISPEELEAFNKSRKARRKFLPVTLKLRMSDEEMARFAVDRWRFPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEILGEGNAALTHIGKSGLERYYEQQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGADLRLSIDADLQRAMVAAFGDQEGSAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFKALNENPSRPQFNRLVLGGVAPGSTLKPLIGLAGLDSGVRRPEDKVLSTGMFYLPGTSRGWGDAHRGGHGWTDLRKSIAESVNTYYYKLALDLGIERFDHYMEYYGFGQPTGIDLTGEIGGILPSPAYKRKTRKEAWYPGDTVNISIGQGDWKVTPLQLARGVSALADGQLRTPHLVIQQRDGFDSDWTAAPPGESKPVSPNPNNVQAVREGMMATMRPGGSGWRVAVGAPYVMAGKTGTAQVISRKGTAAVNPKSLPMHLRHRALFVGFAPVENPVIAIAVAVEGGGYGGSAAAPIARKVFDAYLLGKMPEGMQPLDSERGTTAIGATAFDNEDAGARQAGDLAAAQLGEHPAQVGAPTPEPAPAPQPGTPAAAAVPATPRPTVAEPAR
>NZ_LT906480.1|WP_005411073.1|4267423_4268536_-|rod-shape-determining-protein-RodA
MKVFLRWAGDMLRRFFSTLDWVLCLALGALMVIGLATLKSAGGDGLVMAQGARFAVGMAALWGISRVPILRIRSATPMIYAISMIPLLAVFVLGTGKYGRQWLDLKFFYLQPAELLKVSLPMMVAWYLHKMPLPPRFNTVLVALIIIGVPTGLVMLQPDFGTGVLIAASGVFVLLLAGLPWWWVGLGVGGVAAVAPVAWFWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGEGSQSHLNFIPEQTTDFAFSVLSEEFGWMGVALVLTLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVRSHNPVHGGYG
>NZ_LT906480.1|WP_024957048.1|4266192_4267287_-|rod-shape-determining-protein-RodA
MEWKRLLGGCREVARTIDLPLLIALLILMGAGLAVLHSVSGPVAGQAARFAGGLASMWLLSRVSLLRLRAWTPAIYALSLLPLMAVYVIGTGKYGQRWLNLGVFYLQPSELLKLSLPLMMAWYLHRQPLPPSPRTVLTTTVLIGVPAVLILMQPNLGTATLVTASGVFALLLAGLHWGWVATGATGLAVAAPLAWFGLLRQYQKDRVLTFLDPSADPLGTGWNILQSRIAIGSGGWDGRGWGQGTQATLDFLPEYTTDFAFSVLAEEFGWIGVATVFALYLFVVGRCLWIAVHARDTHARLLAGSLGLAFFVYVLVNGGMISGLLPVVGIPMPLISYGGTSAVSLLAGIGLVMAVRGHRPVHGG
>NZ_LT906480.1|WP_005411082.1|4278665_4279427_-|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MSESPYKAGTTHFGFRDVAAKDKQKLVGQVFTSVARNYDLMNDLMSLGVHRAWKRYYVATAQVKPGDRVLDLAGGTGDIAALLKERVGAEGSVVLGDINAGMLSVGRDRLTNRGLVLGLDYVQCNAEALPFPDNSFDLVTIAFGLRNVTDKDAGLREMYRVLKVGGQARVLEFSEVTADWFKPIYDFHSFKILPKLGKLFANDSDSYQYLAESIRKHPPQDELKAMMGQAGFERCHYKNLTGGIVSIHSGYKL
>NZ_LT906480.1|WP_005411083.1|4279507_4279960_+|nucleoside-deaminase
MITTPDYQALLQTAIAEARQGLAEGGVPIGAALYHNDGRLLGCGHNRRVQEGDPSVHGETDAFRKAGRQRRYQDTIMVTTLAPCWYCSGLVRQFNIGTVVVGESRTFQGGIDWLRENGVNVIDLDSQECVDLLGGFIAQHPEIWNEDIGE
>NZ_LT906480.1|WP_024957053.1|4280158_4280419_+|hypothetical-protein
MCAHAVRPAPDSILDPIRERLQRQYALHRRGALFWTAYQRMQLELVRRHPLDHERLCNAMATLAEDLGAVEHAQLIGHANASSTSC
>NZ_LT906480.1|WP_005411085.1|4280494_4280830_+|hypothetical-protein
MHAEVPTIPPVINVDAELDHWRRQHAEGALPHNSFGSYVPWIKFACDSLITQPRASEAERDEMFQTQYALQIMPRLSEAQAREFVDRCWQHVYQSSPVRSLQAPRLQRMRA
>NZ_LT906480.1|WP_005411086.1|4280897_4281320_+|low-affinity-iron-permease-family-protein
MKVRNLFNTIAKKAAAATGSPWTFLAAVAIVVIWGISGPVFGFNDTWQLVINTGTTIITFLMVFLIQHTQNADTAAMQIKLDELIRATAEANNELLDLEELDEARLEEIRAEYEQMAREAGDALARVRACHAARRDDEAV
>NZ_LT906480.1|WP_012481298.1|4281403_4282804_-|multidrug-efflux-RND-transporter-outer-membrane-subunit-SmeF
MEVIPMKSASLFLSIAAVLALAGCSTLVPKNTAVAPAIPAQWPAEAAQGEVADVAAVGWRDFFTDARLQQVIDQSLQNNRDLRVAVLNVERARGQYRVQRADRVPGVAVTGQMQRQGTDAGVNEQFTAGVGVAEFELDLFGRVRNLSEAALQQYFAVAANRRNAQLSLVAETATAWLTYGADAQRLKIADATLKTYEDSLRLAEARHERGGSSALELTQTRTLVETARTDAARLRGQLAQDRNALALLAGGQLDPALLPDSIEPQLLALAPPPAGLPSDVLLQRPDIMAAEHQLLAANANIGAARAAFFPSISLTGSIGSGSSELSNLFDSGTRVWSFLPKITLPIFQGGKLRANLAIANADRDIALAQYEKSIQVGFRETADALALNVSLDEQVSSQQRLVEAAEQANRLSQARYDAGLDSFVTLLDARRTAYNAQQTQLQAQLAQQANRITLYKVMGGGWHERS
>NZ_LT906480.1|WP_005411089.1|4286032_4287217_-|multidrug-efflux-RND-transporter-periplasmic-adaptor-subunit-SmeD
MLLSRIRPFALSLAIAAAVAACGGQPQAPEQGPGDVTVVTLKSETVGLTRELPGRTNAFLVAEVRPQVNGIVAKRLFTEGGMVKAGEPLYQIEDASYRAQANSARAQLARAEATANAARLSAKRITELAKVDAVSQQDLENAVAAQKQAEADVGAARASLDAANVTLGYARITAPISGRIGKSSVTQGALVSAGQANALATVQQLDPIYVDLTQSSAELLQLRRELAAGRLQDNQTLPVSILMEDGSTFEHKGTLEFSEVSVDPATGSFGLRVKVDNPDGLLMPGTYVRAVIGGGVRSDAVLVPMQGIARDPKGDTTAMVVGKDNKVEVRPVKVSRTVGDKWLVEDGLKAGDKVIVEGLQKIGPGMPVKATEKGAAPAKPAAAAQPAAPAGDAK
>NZ_LT906480.1|WP_024957054.1|4287437_4288097_+|efflux-transporter-SmeDEF-transcriptional-repressor-SmeT
MARKTKEETQATREGILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELERTSTDQRDTPVHDLRAVMIHSFIELSEDERLRKTMEIMLRSDASADTRVLTEMQQAGFRDALDRMERALRRARDLGQLREGADPKIAARMLHATVLGVLHGAMVEPDLMDLKRDGMLALDMTLAAYVKDGVFVPGTVPEPLPEA
>NZ_LT906480.1|WP_024957055.1|4288142_4289135_+|Gfo/Idh/MocA-family-oxidoreductase
MILDNVMWGFIGCGSVTEKKSGPALASTPGSRVAAVMRRNAALAEDYARRHAIPRWYADADALIADPEVNAVYVATPPSTHMQYALQAIAAGKPVYIEKPMAMDHDECQRIIAASARSGVPVFVAYYRRALPRFAQVKQLLDNGAIGTPRSVRAILHRPHSANAASPDFWRTNPSIAGGGLFVDLGSHTLDLLDHLLGPLSDVRGLASSLTGAYAAEDSVSMCFRTGSGAHGIAQWSFCAFRRQDEVEITGDRGQLRFATFEDVPVVLETEAGMQAFDIPNPPSVQQPLIASLVDELRGNGRSPSSGISAARTSAVIDQVLRDYRTRQSR
>NZ_LT906480.1|WP_005414521.1|4289231_4290605_-|ATP-dependent-protease-ATPase-subunit-HslU
MSKIEVSSATMTPREIVQELDRHIVGQHDAKRAVAIALRNRWRRMQLVPELRNEVMPKNILMIGPTGVGKTEIARRLATLANAPFVKVEATRFTEVGYVGKDVEQIIRDLADTAVKLYREQAKVRVRTQAEERAEDRILDALLPRRSGGIGFDPEVARNEPSAQDNETRIKFRKMLRNGELDEREIELDLAANVSMDIMTPPGMEEMGQQLKSMFANLGGGAKAHKRTLTIKAARPLLIEEEAGKLVNEDDIRTAAIEACEQHGIVFIDEIDKVAKRGDNVGGGDVSREGVQRDLLPLVEGSNVSTKYGTIKTDHILFIASGAFHLAKPSDLIPELQGRFPIRVELGALSKGDFVRILTEPKAALTKQYEALLATEGVKVSFTADAIERLAEIAFQVNERQENIGARRLHTVLERLLDSLSYEAPDRDGESLAIDSAYVDKHLGELVQDPDLSRYIL

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Crispr_ID: NZ_LT906480_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_14

4538776-4538872

Orphan

Consensus_repeat	Method
GGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_14

>merge|NZ_LT906480|14|4538776-4538872|CRISPRCasFinder
GGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAACACCTGCAGCCAGGCATGGCCTGGCTCTGGTAGTGCCGGCCGCTGGCCGGCAACCTCACGAAC

>NZ_LT906480|14|14|4538776-4538872|CRISPRCasFinder
GGTAGTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	ACCTGCAGCCAGGCATGGCCTGGCTCT
GGTAGTGCCGGCCGCTGGCCGGCAACCTCACGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_024957676.1\|4542972_4544508_+\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166
NZ_LT906480.1\|WP_005414703.1\|4537808_4538735_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_LT906480.1\|WP_024957675.1\|4545288_4545678_+\|Na+/H+-antiporter-subunit-G	unknown	unknown	gnl\|CDD\|237169
NZ_LT906480.1\|WP_005411320.1\|4530571_4531603_-\|anthranilate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234682
NZ_LT906480.1\|WP_024957674.1\|4545752_4546712_-\|sodium:calcium-antiporter	unknown	unknown	gnl\|CDD\|223604
NZ_LT906480.1\|WP_024957678.1\|4534832_4535762_-\|lipid-kinase-YegS	unknown	unknown	gnl\|CDD\|237281
NZ_LT906480.1\|WP_024957673.1\|4547567_4548104_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_012481443.1\|4536087_4536570_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT906480.1\|WP_005411337.1\|4546785_4547442_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005411326.1\|4536629_4537304_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|136958
NZ_LT906480.1\|WP_024957680.1\|4529701_4530496_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710
NZ_LT906480.1\|WP_005411327.1\|4537334_4537664_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|236512
NZ_LT906480.1\|WP_005411330.1\|4539755_4542584_+\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
NZ_LT906480.1\|WP_005411329.1\|4538936_4539422_+\|DUF962-domain-containing-protein	unknown	unknown	gnl\|CDD\|226914
NZ_LT906480.1\|WP_024957677.1\|4542583_4542976_+\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
NZ_LT906480.1\|WP_005411322.1\|4532209_4532989_-\|SIMPL-domain-containing-protein	unknown	unknown	gnl\|CDD\|377344
NZ_LT906480.1\|WP_012481439.1\|4531619_4532207_-\|aminodeoxychorismate/anthranilate-synthase-component-II	unknown	unknown	gnl\|CDD\|235552
NZ_LT906480.1\|WP_005411333.1\|4544504_4545011_+\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
NZ_LT906480.1\|WP_005411334.1\|4545007_4545292_+\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
NZ_LT906480.1\|WP_024957679.1\|4533056_4534532_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184146

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024957676.1\|4542972_4544508_+\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_LT906480.1\|WP_005414703.1\|4537808_4538735_+\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_LT906480.1\|WP_024957675.1\|4545288_4545678_+\|Na+/H+-antiporter-subunit-G	gnl\|CDD\|237169	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed.	2.35594e-32
NZ_LT906480.1\|WP_005411320.1\|4530571_4531603_-\|anthranilate-phosphoribosyltransferase	gnl\|CDD\|234682	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional.	0
NZ_LT906480.1\|WP_024957674.1\|4545752_4546712_-\|sodium:calcium-antiporter	gnl\|CDD\|223604	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism].	2.68114e-43
NZ_LT906480.1\|WP_024957678.1\|4534832_4535762_-\|lipid-kinase-YegS	gnl\|CDD\|237281	PRK13054, PRK13054, lipid kinase; Reviewed.	2.2795e-162
NZ_LT906480.1\|WP_012481443.1\|4536087_4536570_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.91253e-14
NZ_LT906480.1\|WP_005411326.1\|4536629_4537304_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|136958	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional.	1.85747e-151
NZ_LT906480.1\|WP_024957680.1\|4529701_4530496_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	1.29298e-152
NZ_LT906480.1\|WP_005411327.1\|4537334_4537664_-\|DnaJ-domain-containing-protein	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	7.85788e-19
NZ_LT906480.1\|WP_005411330.1\|4539755_4542584_+\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_LT906480.1\|WP_005411329.1\|4538936_4539422_+\|DUF962-domain-containing-protein	gnl\|CDD\|226914	COG4539, COG4539, Predicted membrane protein [Function unknown].	3.77801e-15
NZ_LT906480.1\|WP_024957677.1\|4542583_4542976_+\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	8.29999e-63
NZ_LT906480.1\|WP_005411322.1\|4532209_4532989_-\|SIMPL-domain-containing-protein	gnl\|CDD\|377344	pfam04402, SIMPL, Protein of unknown function (DUF541). Members of this family have so far been found in bacteria and mouse SwissProt or TrEMBL entries. However possible family members have also been identified in translated rat (Genbank:AW144450) and human (Genbank:AI478629) ESTs. A mouse family member has been named SIMPL (signalling molecule that associates with mouse pelle-like kinase). SIMPL appears to facilitate and/or regulate complex formation between IRAK/mPLK (IL-1 receptor-associated kinase) and IKK (inhibitor of kappa-B kinase) containing complexes, and thus regulate NF-kappa-B activity. Separate experiments demonstrate that a mouse family member (named LaXp180) binds the Listeria monocytogenes surface protein ActA, which is a virulence factor that induces actin polymerization. It may also bind stathmin, a protein involved in signal transduction and in the regulation of microtubule dynamics. In bacteria its function is unknown, but it is thought to be located in the periplasm or outer membrane.	6.70239e-20
NZ_LT906480.1\|WP_012481439.1\|4531619_4532207_-\|aminodeoxychorismate/anthranilate-synthase-component-II	gnl\|CDD\|235552	PRK05670, PRK05670, anthranilate synthase component II; Provisional.	3.40413e-133
NZ_LT906480.1\|WP_005411333.1\|4544504_4545011_+\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	3.97544e-62
NZ_LT906480.1\|WP_005411334.1\|4545007_4545292_+\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	1.64199e-36
NZ_LT906480.1\|WP_024957679.1\|4533056_4534532_-\|anthranilate-synthase-component-I	gnl\|CDD\|184146	PRK13565, PRK13565, anthranilate synthase component I; Provisional.	0

>NZ_LT906480.1|WP_005414703.1|4537808_4538735_+|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MPTTLLQSDLPGLPLRHRGKVRDVFDIPRERLPAGTPPGEYLLMVATDRLSAFDVVLPDPIPGKGEMLCQVSNFWFAKTAHLMPNHLTGIDVASVLPEGVDPALYAKRAVVTRKLKPVPVEAIARGYLIGSGWKDYQRTGKVSGIDLPDGLRQAEQLPEPIFTPSTKAAVGDHDENIDFDAMVKQVGAELAERVRDATLRIYKFAADYARERGIILADTKFEFGTDADGRLYIMDEMLTPDSSRYWPADEYEVGTSPPSYDKQFVRDYLETLDWGKTAPGPTIPAEIIERTRAKYAEALQRLAGISVD
>NZ_LT906480.1|WP_005411327.1|4537334_4537664_-|DnaJ-domain-containing-protein
MRWYGKLLGFIAGALLFRPNPLFGAVVGLLIGHAFDSDWFRLNKENPYRELGLTSEATDAEVERAYRKLISQYHPDKLGGAAPELQQQAEQKSRRINAAYDRIKTLRKR
>NZ_LT906480.1|WP_005411326.1|4536629_4537304_-|ribulose-phosphate-3-epimerase
MSHCLIAPSILSANFARLGEEVDNVLAAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGVTAPIDVHLMVEPVDRIIPDFAEAGATYISFHPEASRHVHRTIQLIRSLGCKPGIVLNPATPVDILDWVLEDLDLVLLMSVNPGFGGQAFIPSALDKLKVVRKMIDASGKDIRLEIDGGVKADNIGEIAAAGADTFVAGSAIFNAKTSYQDVIAQMRANVAAAR
>NZ_LT906480.1|WP_012481443.1|4536087_4536570_-|GNAT-family-N-acetyltransferase
MALLNIRPATVADAGLILHFIRELAIYEKAEHSVQTDEIGIAESLFGADATARALICEADGEAIGYAVYFYNYSTWLGRKGIYLEDLYVSQEKRGVGAGKALLKYIARQAVAEGCGRFEWSVLDWNTPAIEFYTAAGAKPQDEWTVYRLQGQALHDFANG
>NZ_LT906480.1|WP_024957678.1|4534832_4535762_-|lipid-kinase-YegS
MTTPRWRLILNGKSAGNDELRDAVGHWRGQGVQLEVRVTWEDGDAERYVAEAIDHGVDVIVAAGGDGTLSAVAETLAHREELEDALPSLALIPMGTANDFATAAGIPTEPKEAFALIGQATPHAIDLLRVNADGTQWWCANLASGGFGTQVTVETDAGLKKMLGGLAYVITGIAKLGRIEPITARLSGPDFAWEGDFIALGIGNGRQAGGGQQLCPQALIDDGLLDVTVLPELEGEVTATLGQMLKSGTQAALEQLATRARLPWLEVASERPLTLNLDGEPVQARQFRIECVPGRVRMHLPAGCPLLGG
>NZ_LT906480.1|WP_024957679.1|4533056_4534532_-|anthranilate-synthase-component-I
MNSHAQFQQQAAEGHTHIPVVREVLSDLDTPLSVYLKLADGPNTYLFESVEGGERFGRYSIIGLPARRVYAFHGHTLTVREDGQVVDTREVADPFAEVEALRSAHSVPKLEGLPGFTGGLVGWFGFECIGYIEPRLAPPAGRDELGTPDILLLDSNELAVFDNLKGRLYLIVHADPRVDGAFEQAQARLDALTAKLRAPGAGYPAPLNSDVLDESDFVSGFTREGFVDAVQRSKEYIRAGDIFQVVLSQRLSVPFKARPVDVYRALRALNPSPYMYFLDVGDLQVVGSSPEILVRLQDGEVTVRPIAGTRPRGATPEQDLALEAELLADPKERAEHLMLIDLGRNDAGRVSRAGTVEVGEQFVIERYSHVMHIVSEVTGQLQPGLSYADVLRATFPAGTVSGAPKIRALEVIRELEPIKRNVYAGSIGYIGWHGDADTAIAIRTAVIKDGRLYVQAGAGIVYDSDPDKEWDETMNKGRALFRAVAQAAKGL
>NZ_LT906480.1|WP_005411322.1|4532209_4532989_-|SIMPL-domain-containing-protein
MKLLSALLWSSLLATMAPSAWAQANTIPSQPHLLVKGEARRVVMPDRFGLQLNIEETDMDADAARRRVQDNVARVLALFKQHKAVEGSVRADNLRIGPATRYEQNRQVFIGTRVSRQLRASFASVQQMQDVLGALKANENLQVSSVAPMYSGEVALRRELKGEAAAQTRQSAQGLAKAYGTQLRGLYSISDVAPNFAYGVQAGNWPSSGDLVTPPSPPAPEAPMNSIETTGSRLRESVEAGPITYTENVYAIFLISDGT
>NZ_LT906480.1|WP_012481439.1|4531619_4532207_-|aminodeoxychorismate/anthranilate-synthase-component-II
MLWMIDNYDSFTYNLVQYLQTLGAEVKVVRNDAMSVDEIAAQKPERIVISPGPCTPNEAGVSLELIERLGPTTPILGVCLGHQGIGQVYGGTVIRAGNIMHGKTSPIRHEGKGVFAGLPDRYQATRYHSLVVDKNSLPDCLEVTAWTENDDGSIEEIMGLRHRQFPVEGVQFHPESILTEHGHALLRNFLQRPAA
>NZ_LT906480.1|WP_005411320.1|4530571_4531603_-|anthranilate-phosphoribosyltransferase
MSFSPQEALHRTIEHREIFFDEMVDLMRQIMRGDVSPMMTAAILTGLRVKKETVDEIAAAATVMREFARPVPVADTSNLVDIVGTGGDGSHTFNISTCAMFVAAAAGARVAKHGNRSVSSKSGSADALEALGAVIELQPDQVAAAIDRTGIGFMFAPIHHPSMKVVAPVRREMGVRTIFNILGPLTNPASAPSVLMGVFHPDLVGIQARVLRELGTERAMVVWGRDNMDEISLGAGTLVGELRDGKVREYEIHPEDFGIAMSASRNLRVDGPEQSIQMLRAVLDNEPGPALDIVALNAGAALYVAGVASDIGDGLARARAAIANGSARQRLQQYVETTRALVA
>NZ_LT906480.1|WP_024957680.1|4529701_4530496_-|indole-3-glycerol-phosphate-synthase-TrpC
MSDILQTILARKAEEVAQRRAQRPLEALQAAVASAPPVRGFVRALQAAVANGDPAVIAEVKKASPSKGVIRPDFRPADIAVSYEFGGASCLSVLTDVDFFQGADAYLQQAREACTLPVLRKDFVIDAYQVYEARVLGADCILLIVAALDDTQLATLSELSLSLGMDVLVEVHDIDELERALQVPAPMIGINNRNLRTFEVSLQTTLDMQQAVPRDRLLVTESGILGPQDVALMRDAGIHAFLVGEAFMRVEEPGEGLRQLFFAA
>NZ_LT906480.1|WP_005411329.1|4538936_4539422_+|DUF962-domain-containing-protein
MQTSTELARPIDRYFASYSDDHRNVINQRIHVVAVPAILWSVVALLWCLPPLITWFQYGIWSAFAMFSAWCFYNKLSRPLGIGMLIQFFVFGCLCRLLEAEIGLHNLFWLAVGVFVVAWIAQFIGHKFEGRKPSFLTDLTYLLIGPAWVMAKFYRKLDWRY
>NZ_LT906480.1|WP_005411330.1|4539755_4542584_+|monovalent-cation/H+-antiporter-subunit-A
MLPSLPLLLALPFLMAAAVAAFPRSSRSTAAWLAALAPLGGLAILGWLTPSVLDGQVVRTMVPWLPQIGLDFTLRLDGLAWMFAGLVLGIGALVVLYARYYLSQQDNAHRFYCYLLLFMGAMLGMVLSGNLLLLMIFWEMTSISSFLLIGFWSHRQDAREGARMALVITGGGGLALLGGVLLIGRIVGSFDLDVVLAAGEQIRASALYPYALFLVLAGIFTKSAQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLARLHPALAGSDLFFYTVSGIGAITLLIGAWNAIFQHDLKGLLAYSTISHLGLITLLFGLSTPMAVVAGVFHILNHATFKASLFMAAGIIDHETGTRDMRKLGGLRRLMPFTSALAIIASLAMAGIPLLNGFLSKEMLFAEAITAGGPGIMRTAVSIAALLAGVFGVAYSLRFVHDTFFGPGPHDLDRVPHEPPRWMKVPVELLVVICVAVGIAPALTVAPVLHAAAASILGSAMPEYSLAVWHGFNLPLAMSAIGVIGGVALYFGLRKLINLHAVTNVSTGRNVFHAQLDAVSALAMRLTNGIANGSLQRMLLGLVLVAIAVAAAPFVADPASPNWTAPQPMPLLGWALWLVMMACAVATLRIYKQRLLAVLLVGGVGLMVALTFVFLSAPDLALTQLLVEMVTLVLMLLGMNYLPAQSGPERPRWRKRRDAVIAIIAGAGLGALAYSAMTLPPNTMAGELLARALPEAYGQNVVNVILVDFRGFDTFGEITVFGIAALVVHALLRRTRMAPEQIMPGPPIKLPVPADLAQIMFPLTLTVSIFLFLRGHNAPGGGFIAGLVLAVPLLIQYVIQGTASVESRFGFDYIRCIGMGLLIALLSGSASMLFGVPFLTSGHLDLHLPLIGDVPLASAIGFDIGVYLVVFGGAMLMLSMMGTIKPSRTRAARKGEIDLQRRSARTGEMH
>NZ_LT906480.1|WP_024957677.1|4542583_4542976_+|Na+/H+-antiporter-subunit-C
MELALATAIGVLTAIGIYLLLRARSFDVILGMTFLSYATNLLIFAGGRVVLGKAPVLQEGVDSHLGNYTDPLPQALVLTAIVIAFAMTAVSIVLAMRSRSDNHSDHVDAHEPDDDLQDENASARQGEDRA
>NZ_LT906480.1|WP_024957676.1|4542972_4544508_+|monovalent-cation/H+-antiporter-subunit-D
MNHLVILPILIPLLGAALSLFVEHRRYGPRVQRAVAWTALSALALAVSLLFASTAGGDINVYLLGDWPSRLGIALVADRLSAWMLLTTLLLAIPCLLHACSGWDRRAPHFHALFQFQLVGLNGAFLTGDIFNLFVFFEVMLIASYGLLLSGGRGLRMRIGLHYVVFNVTASTLFLIALGLLYATLGSLNMAELSQRIAAVPPTQLTLVKATMGLLLLVFCAKAALMPLYLWLPEAYSRAPAAVAALFAIMTKVGLYSVLRIQMLWFGDDAGAMAGYGRDWLLWAGVATLVLGGLGALAATRLRVLISYLVIVSAATLFIAFSVGTPQVLSAGLYYLPHSSFVAAALFLVADLIRRRRGGASDRKEVVAPMPGKETPAVLFLIGAVSVAGLPPLSGFLAKAALLAGMPAQYIGPVWTAVLVSSLLVIMGLTRGGIRLFWRVPPGDPDAPKPRKAPLRRVELYAACLLLAYGIGMTLAAAPLMRYTDATAAQLLQPSEYVQQLRATTPEIRQP
>NZ_LT906480.1|WP_005411333.1|4544504_4545011_+|Na+/H+-antiporter-subunit-E
MTAQRSLFRRLIPSPMLSIMVVAFWLLMSDSFTLGQIVLGLLLGVVVPLFAARLDREFARIGTLRPLPRLVCVTLWDILMSNIRVALQVLGPEKNIHPGFIWLPLDIANIHGIAALTSMITLTPGTVSAALSDDRKFLLVHVLHLEDPQDLIDTIKRRYEAPLMEIFP
>NZ_LT906480.1|WP_005411334.1|4545007_4545292_+|K+/H+-antiporter-subunit-F
MTGFEVIQTTLVVCMHVVGLAMLLATWRLLRGPTVPDRILALDTLSVTAIAELMLFGMYLNSPIYFEAALIIAMLGFGSTVVLSKFVLRRDIVE
>NZ_LT906480.1|WP_024957675.1|4545288_4545678_+|Na+/H+-antiporter-subunit-G
MITAIQIGLSMLLLFGCFFILVGALGLVKLSTFFKRLHAPTKASTLGVGCVLVCSVCYHIFLGQDPQPRELLITVFLFITAPISAHMMAKAALSLLMETRPTLPGNERAAEEQLPPPEPVREEETTQNR
>NZ_LT906480.1|WP_024957674.1|4545752_4546712_-|sodium:calcium-antiporter
MIAIAIAWFLLGLLLLALGGDSIVKAVSGLAQRFGASPFTAGLLLLGVTTSLPELAVNARALAVGQPELALGNAVGSSIVNLGLTLALAAMAAPLLLRARLQTVLWWSLLAAGVLLILFGLDGGLARWEGGILLVGFIVVQVLLLRRGRGESAEVQVAIAESALSRTSLPLNVLRVLIAALTLYWGARLVVGAAADFGAALGWTPLLVGLLPVAIGTALPEVATAIAAARRGHGDMVLGHVLGSSVVNLLLVIGAMAVLQPLALPASFVRLELPALLAFALVLYPMLRGDLKISRGEGGILLVAFVGWFVLELLLVGAA
>NZ_LT906480.1|WP_005411337.1|4546785_4547442_-|hypothetical-protein
MKHLPLAGLLLLSLTACSAGPDKQGAAGSGSDTPAETASATGPAQSTDPDLAARPANDRREDSPARLDGFAGAKLGAGIAEVRAGFGTPLQGLGTDAAGKPLPADDSNDGCYFLRPQDAEDPRLMIEGRKLVRYDVRSAAITAPGGGKVGMTLGELQVLYPERADVGPDKYDEKAQHLRVRPAQEGGAVIDFALGADGRVGAWRVGQTPQVDYAEGCG
>NZ_LT906480.1|WP_024957673.1|4547567_4548104_+|hypothetical-protein
MQPRKTDLARTALQAHRAPLDMRQRRLLILCDGQRTVADLTGLLGQEAPAMVIQLVQAGYLSTGTGATTPAPSTAAAVAPVPTPPAATPAAPAVERRRSLVAARIYALGILEMQRHPQAAALFRDLQQARAEDEVLQRLQSAMQLLPTLTSDGYCQRVRQRLLEALPLEHCDAFAEVA

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Crispr_ID: NZ_LT906480_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906480_15

4675168-4675350

Orphan

Consensus_repeat	Method
GAAGATTCCCCGGCACGGTTGGAATGTGCCAACCAAGGTTGGCACCCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906480_15

>merge|NZ_LT906480|15|4675168-4675350|CRISPRCasFinder
GAAGATTCCCCGGCACGGTTGGAATGTGCCAACCAAGGTTGGCACCCACCAGATCGGAGGTAGATCGTGGAATGGGATGTGCCGACCAACAGTCGGCACCCACCCGACCGGTAGCGCCGGCCGCTGGCCGGCGGAAGATTCCCCGGCACGGTTGGAATGTGCCAACCAAGGTTGGCACCCACC

>NZ_LT906480|15|15|4675168-4675350|CRISPRCasFinder
GAAGATTCCCCGGCACGGTTGGAATGTGCCAACCAAGGTTGGCACCCACC	AGATCGGAGGTAGATCGTGGAATGGGATGTGCCGACCAACAGTCGGCACCCACCCGACCGGTAGCGCCGGCCGCTGGCCGGCG
GAAGATTCCCCGGCACGGTTGGAATGTGCCAACCAAGGTTGGCACCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906480.1\|WP_024957986.1\|4666496_4667177_-\|SCO-family-protein	unknown	unknown	gnl\|CDD\|239266
NZ_LT906480.1\|WP_024957992.1\|4676872_4679275_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_LT906480.1\|WP_024957993.1\|4680094_4680922_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_LT906480.1\|WP_005411483.1\|4679493_4679907_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005411475.1\|4668154_4670131_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|131890
NZ_LT906480.1\|WP_024957995.1\|4682068_4682740_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319898
NZ_LT906480.1\|WP_024957994.1\|4680935_4682015_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|226651
NZ_LT906480.1\|WP_024957985.1\|4665777_4666356_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_005411473.1\|4667188_4667521_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_LT906480.1\|WP_005411478.1\|4672714_4672975_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957990.1\|4673583_4675098_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_LT906480.1\|WP_024957998.1\|4685975_4686488_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957996.1\|4682741_4684061_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|377378
NZ_LT906480.1\|WP_005411479.1\|4672974_4673574_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906480.1\|WP_024957991.1\|4675571_4676873_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NZ_LT906480.1\|WP_024957997.1\|4684063_4685902_-\|peptidase	unknown	unknown	gnl\|CDD\|224086
NZ_LT906480.1\|WP_024957988.1\|4670136_4671042_-\|ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
NZ_LT906480.1\|WP_005414759.1\|4667522_4668158_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|131889
NZ_LT906480.1\|WP_024957999.1\|4686570_4687197_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368573
NZ_LT906480.1\|WP_024957989.1\|4671225_4672641_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089

Protein	Function_ID	Function_description	E-value
NZ_LT906480.1\|WP_024957986.1\|4666496_4667177_-\|SCO-family-protein	gnl\|CDD\|239266	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properties of Sco1 implies that it participates in signaling events rather than functioning as a chaperone that transfers copper to COX II.	6.1705e-51
NZ_LT906480.1\|WP_024957992.1\|4676872_4679275_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.3036e-68
NZ_LT906480.1\|WP_024957993.1\|4680094_4680922_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.11048e-28
NZ_LT906480.1\|WP_005411475.1\|4668154_4670131_-\|cytochrome-o-ubiquinol-oxidase-subunit-I	gnl\|CDD\|131890	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	0
NZ_LT906480.1\|WP_024957996.1\|4682741_4684061_-\|TPM-domain-containing-protein	gnl\|CDD\|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	8.90213e-48
NZ_LT906480.1\|WP_024957999.1\|4686570_4687197_+\|hypothetical-protein	gnl\|CDD\|368573	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family. Amidase_YiiX is a family of permuted papain-like amidases. It has amidase specificity for the amide bond between a lipid and an amino acid (or peptide). From the structure, a tetramer, each monomer is made up of a layered alpha-beta fold with a central, 6-stranded, antiparallel beta-sheet that is protected by helices on either side. The catalytic Cys154 in UniProtKB:Q74NK7, Structure 3kw0, is located on the N-terminus of helix alphaF. The two additional helices located above Cys154 contribute to the formation of the active site, where the lysine ligand is bound.	7.20563e-35
NZ_LT906480.1\|WP_024957988.1\|4670136_4671042_-\|ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	1.30608e-148
NZ_LT906480.1\|WP_005411473.1\|4667188_4667521_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.92143e-34
NZ_LT906480.1\|WP_024957990.1\|4673583_4675098_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.1188e-95
NZ_LT906480.1\|WP_024957995.1\|4682068_4682740_+\|VOC-family-protein	gnl\|CDD\|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	0.00028102
NZ_LT906480.1\|WP_024957991.1\|4675571_4676873_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	2.8382e-59
NZ_LT906480.1\|WP_024957997.1\|4684063_4685902_-\|peptidase	gnl\|CDD\|224086	COG1164, COG1164, Oligoendopeptidase F [Amino acid transport and metabolism].	1.27983e-28
NZ_LT906480.1\|WP_024957989.1\|4671225_4672641_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.18004e-107
NZ_LT906480.1\|WP_005414759.1\|4667522_4668158_-\|cytochrome-o-ubiquinol-oxidase-subunit-III	gnl\|CDD\|131889	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	8.23598e-101
NZ_LT906480.1\|WP_024957994.1\|4680935_4682015_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|226651	COG4188, COG4188, Predicted dienelactone hydrolase [General function prediction only].	1.88496e-26

>NZ_LT906480.1|WP_024957990.1|4673583_4675098_+|PLP-dependent-aminotransferase-family-protein
MTSLTLAGAAAANNNGGHLSEPTDGYGQAPAVGSNDTPRHAPYMPRPDVAAREWVQDVLAHNGPIYLRIVNSLERTVRRGGLAPGQRLPSQRALAQQLGIDLTTVTRAFDEARKRGLIEARGPQGSFIAPPKAGFDQVVDLSMNVPPVPDADALAETLRRGAAAVLARSNAPNLMTYHLGGGNPTDRHAAARWLQPMLGKVDDACLLLTEGAQVALAAILVSQGRDDDAILCDALVYPGLLQAAAALGRRLLPVDSDEHGMCPDALARLARESGARLVYLNPTCQNPTALTLPLQRREALARVLEREGLLAIEDDPYWHLAEDAPTPLAALAPRHVFYVATLSKVISPGLRTAFVQCPSAAHAEAMTAALRATRLMGHPLVSALASQLLLDGSAQSLLAQVRTEARERMRMARYLLAPSLLQRAEGLHAWCRVPAPWTDATLVRTAQLQGLAIAPSSAFCPPGVSHQSGVRLSLGLAADRRQLESALRRIDRLLLSDALPAIER
>NZ_LT906480.1|WP_005411479.1|4672974_4673574_+|hypothetical-protein
MGAAAPRRRRLLPTMIALACLFMAGVAAALWQYFGYSAQSTFTEQAIVFDDSQLRLPADLAGDTGRIRVVHFWDPACSVCNRETGAHLSYLISMYRRAGIDFYAIRRPGTQGELPEPLRNKVINLPTIDGIEHIPASPAVAIWDRQGHLAYAGPYSIGMVCNSANSFVEPLLDRLVRGETVRPKGLLAVGCYCPWQAKR
>NZ_LT906480.1|WP_005411478.1|4672714_4672975_+|hypothetical-protein
MRAEKLKFHLVMAGCGGFVVLMLAALAWVCLQPQTVDVQAAERHAIEQCVQRSEDPSRSEIQRRAQADSCREMRKQYVHKFGREDS
>NZ_LT906480.1|WP_024957989.1|4671225_4672641_+|PLP-dependent-aminotransferase-family-protein
MTPPAAGRRLKHPNRTWVRPFREGAGPLYLQIAQQVREAVDDGVLRPGDRLPPQRDLAQQVGVDLTTVTRAFAELRQAGLLDAQGAGGTFIALSAGNRSTSVDLSMNIPPLLGSAPFAQGMEAGFQHVGQQLGQGELMSYHVGAGTREDRAAAVQWLAPMLGTVGADQVVICPGAQTALCALILARTQPGELIAAEQLTYPGLLAAARVLQRGVVPVAMDAEGMLPDALEEACQLRRPRLLYLVPTIQNPTTATMSAQRRQALLAVAERHGLTVIEDDPYWLLAGDAAPPLAAHRDAGSPVYYISTLSKCLAPGLRTAYLVVPAGEPMEPVLDALRAIALMPTQSMVAVASQWIRSGQARDMVQRFQQELRERQAIAAQFLPPRARAHPAGLHVWLPLPPRLDQYRLIQAAQEQGLGIASSDAFSVEEPPPGNAIRLSLGGAVDQGALAGALAKLNEILSEAPEARHNAIV
>NZ_LT906480.1|WP_024957988.1|4670136_4671042_-|ubiquinol-oxidase-subunit-II
MNICWNRIRLALVALACVGLSGCDWVLLDSKGMVGLAQRDLILICIGLMLIVVIPAIVLTFVFAWRYRAGNTKAKYTPDWSHSTKVEIVVWGVPLIIIAVLAVIVWKSTHELDPYKPLDVAGEPLHVDVIATDWKWVFVYPDLGIATVNQLNFPANRPLAFNITSNSTMNTFFIPQLGGQIYAMAGMRTQLHLIANEPGQFRGMSGNYSGHGFSNMKFIATASSNEDFERWVAEVRNAPAALSFTQFKALAAPSKNAPVQHFSSVEPLLFKKVIDQFIGVGENTAAATPAGAAGGAQVSQE
>NZ_LT906480.1|WP_005411475.1|4668154_4670131_-|cytochrome-o-ubiquinol-oxidase-subunit-I
MLGKLTWEAVPLHEPIVVVTLAAMVLGGLALLGAVTYFKLWGPLWRDWFTTVDHKKIGIMYVVVALVMLVRGFADALMMRAQLAAAGPGSDGFLPPEHYDQIFTAHGVIMIFFVATPFVVGLMNIIVPLQIGARDMAFPFLNAFSFWIFVVGAALMMISLGIGEFAMTGWVAYPPLSGIEFSPGVGVDYYIWALQASGIGTLLTGVNLFITILRMRAPGMTLMKMPVFTWTVLVTSVIIIAAFPILTVALGALTLDRYLDFNFYTNTLGGNPMMYVNLVWAWGHPEVYILVLPAFGIFSEVTATFARKKLFGYKSMVGATLAIGILSFIVWLHHFFTMGSGASVNAFFGIMTMIIAIPTGVKIFTWLFTMYGGRVEFSVPMLWTIAFLVTFTIGGMTGVLLAIPGADFLLHNSLFLVAHFHNTIIGGALFGYLAGFAYWFPKVFGFTLNERLGKWSFACWVIGFYLAFMPLYMLGFMGMTRRMNQYDNPAWTPYLIAAFIGALFVFAGIILMLVQIYVSVRDRKRNLDLTGDPWNARTLEWATPSPPPFYNFAVVPKADELDAFHEAKKRGLPPPPKKYAPIHMPKNTGVPLILNIWILVLCFALVWHIWWMAAASFIAMIVTLIVRSYDEDVDYYVSSEEVARTEAANLAKLKEVRA
>NZ_LT906480.1|WP_005414759.1|4667522_4668158_-|cytochrome-o-ubiquinol-oxidase-subunit-III
MNLLTRPELASDTQAHEDHHEHDHGHEQGGMKVFGMWVYLMSDLVLFGSLFASYAVLSTAYAGGPTGKELFSLPFVMAETFLLLVSSITYGQAVLAMHRHDTSAVLRWLGVTFVLGASFIGMEIYEFSHLIHEGAGPSTSAYLSAFFALVATHGLHVASGLIWMAVVMHQVYRRGLTPTNITRVSCLSLFWHFLDLVWICVFTFVYLIGAF
>NZ_LT906480.1|WP_005411473.1|4667188_4667521_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MAHVETSRAGNAHGSTKSYLIGFVLCALLTVVPFALVMNPVLSRPLTLFLLVGFAVAQILVQLVYFLHMDRKSEGGWNLASFVFTLVILFIIVALSVWIIWSMHYHMMIN
>NZ_LT906480.1|WP_024957986.1|4666496_4667177_-|SCO-family-protein
MKGIAFPQCGLRLAAGLLLGLLAGCSAQSRMDFYSKDIACEELGQQWSMPDSHGTVRGPKDLQGQVTYLFFGFTSCPDVCPTTMVELSQVKHLMGKDADQLQVVFVSVDPARDTPEVARTYVEAFDPKAIALVGNEAQLAAMASDFKAFYEKEPGQVPDTYTMSHIAGGYVFDRQGRLRLFAPYGMPVEKLFSDVQRLLLEPAHPAAGNDALASCHLKHSDALAAR
>NZ_LT906480.1|WP_024957985.1|4665777_4666356_+|hypothetical-protein
MMKTTILLSTLAFAAMTSPAWAQSSGQTPPARTLSTVDAQELKAFATGRSFDVGGTRFQLSPSTTVKQASGGQFTITPPAAATTSSRTKRSLDGAAAAPADAGAGKFAAAVSRDGAPVVATSRVKVFFTDAASAQRAATATGGTVVKVSKASGQAIVEYPSVNAALDATTRLLSTAGIRATEPDVVQWEETK
>NZ_LT906480.1|WP_024957991.1|4675571_4676873_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MDARRRSLLRAGALLPAAAALSSLLASAAARYASPMEIPSTTVAPDVLARDEGYWAAVASHFDITDEVNHLENGYWGAMGRETLASYQRHTAEVNRGNAWYGRRAFPAQYMAVQREVAELLGVGADEIALTRGATEAMLALIGGYNRLQPGDQVLYADIDYDSMIGAMRWLQQRRGVQVERIALPAVPDHAQILQAYEAAFTRLPRLKLVLLTQVSHRHGLVLPVAEIAERARARGIDVIVDAAHGFGQIDYAVPDLKADFVGINLHKWIGAPVGVGAMYVRKGRVADLDPYMGETDDGRVGSRVHTGTVNFAAYLALPEAIALHQRVGVANKQARLRYLRERWTLPARQMAHIEVLSSPNPGLASALASFRLRGRTGVSDNMALQKRLLDEHRIFTTYRDGLESGACVRVTPSVFTRPEQMDALVKALSALA
>NZ_LT906480.1|WP_024957992.1|4676872_4679275_-|TonB-dependent-receptor
MHRSKLSRSILLALSMASAGGAIAAEADAVDAAGGSHAAPTQLDAMLVTGTRASNRTQFETLAPVDVFTKEDITSVESTDLKDVLAQLVPSFVVQRLPMADGQVFVRPATLRGLSPDQTLVLVNGRRFHRSALLGNRGAQAADLAQIPTSAIKRIEVLRDGASAQYGSDAIAGVINIILEDGPGTEITAGYSQYAQGDGASRDFSARTGWSLGDYGSLVLFAESSNSDATSRTRQRPDAIAFQAAHPELDVPNPVQRWGQPELESRRVGFNVKANASETLELYAFGLYSHSDGVSDFNWRNPDTTTGAYRTTAIFPGWNLRSLYPVGFSPQYGNVQNDLQLVGGLRGEITPKLRWDVSASYGRNAIDYSLKNSINASLGPASPTAFDLGRLTQTEKNANADFNYEWDVAALSKPINVAFGGEFRQETYQVRAGDPASYAVGPGAAAGLEANSNGAPGFSASQAGQWSQRSKAAYVDMEVPLGERWSIGAASRYEDFSSFGSTLDGKLSARFAITPDVALRGTVSSGFRAPTPAQLNTTSTTQGLDTRTLQIFTSGRLSPNDPLAQLLGAKPLKPEESRTASLGLTWRTDLGLSGSVDVYQIKLTDRFSQSASFAIPAGTPNPLGYTSVNYFTNDFDTTTTGVDVVGNYLRDLGAGRMTLTLAYNYNRTRVDNGSTSVATNETQRVLFEDRLPEHKGSLTGSWDIGAWSLMARMRYYGAWTDSSGNAVGNIYQRFGEMSFLDLAVGYRINEHHSLRVGADNVFDRYPDEATFQASRGLVYSRNAPYDTDGANLYAQYRLTF
>NZ_LT906480.1|WP_005411483.1|4679493_4679907_-|hypothetical-protein
MIEMIEMLLALWVLPSLLTLALMLLMLFGAPRWRGNPWVYRVGFALLGGFLTPTLLGAGHGGLPCATIGGLVMILTQLQWIGDLQVDFMGIGIRNRGIWIMSTPALVVFAAMMFVPLRTARPARFGFGDDGNGNGNG
>NZ_LT906480.1|WP_024957993.1|4680094_4680922_+|AraC-family-transcriptional-regulator
MSAAGKALWYIETHADRPLALADVAAAAGLSPFHLSRLFQARTGTSVVRYLRGRRLTAAAQRLAAGAGDILQVALGAGYTTHAAFTRAFSEQFGQTPERVREQGTDGLALVQAIRVDEAPVPCDEAPRLLDTPAFQLAGIGMRHTRDSGGAIPGQWAQLNREWPTPAPISFGVCCNSDDDGGFDYIAALPASAVPSVPAHWQRVDVPARRYLVAWHGGHISAIRSTWFWLLDHYLPGSGLSLAEAPDLERYDTRFDEHTGNGGVEIWLPVDERPN
>NZ_LT906480.1|WP_024957994.1|4680935_4682015_+|alpha/beta-fold-hydrolase
MRMMAAVLGMILMVSTAIAEGSETQAAGERHGATMVASAAVRDAQHHDALRYTVWYPALAGSRETALTIGPPDAPLFEVGRAAVDAPVAGARLPTLLLSHGNGGSARMMGWLGTALARNGYLVIAVDHPGNNGADEMTLPGSVLTWLRADDLRAALAAVQADPILGPHVDPERLGVVGFSAGGYTALLAAGARPSLQRLLAFCTAHPDDGVCQPQQEAATHTMQARRAAAASPALAPWIAEADAQRAIPGVRAVFLLAPAIVQAFAPAQLSALRQPVSIMLGTADTVAPPETNGEAAQAQIPRATLQRLPDVGHYDFLAACTVVGGQRLPELCSTAVPRTKTHRQAVDAATRFFADALR
>NZ_LT906480.1|WP_024957995.1|4682068_4682740_+|VOC-family-protein
MRLLHLTLPVSDVGAVAAYFHDVLQQRVIGPHVHIGWSTIELQPAEGRPLGGVHLAFNVPDNRFGEAMTWLRERTPLQRNPAGLDYFALESSWQSQSVYFTGPDGLILELIGRRRLPDSTHQGAFHGSELTCLSEVGLPSHDVDAVREQSSLRFGLQPISPPSAQFAPMGDDEGLLIVVAADRRWFPEQKDLPNAQGLLLQVGDVAGPGVVEDAALGWRVQAT
>NZ_LT906480.1|WP_024957996.1|4682741_4684061_-|TPM-domain-containing-protein
MLRRMTCTWATAWLLMLLCLLPRVVMAGAAVPALDDPVVDAANALSADTRDKLRTQAFQLQARTGAQLQVMVVNHVGDEGIEAYAQRVFDQWQLGREGVDDGVLLLVAVQDRRVRIQTGYGVEGAIPDAYAARIIDKAIVPRFRDGDLDQGVLDGTKIIVALIDGEDLPAWEEPSMCNVLPADWRSADSVVALTLLAGFLAGLWRSPPSAQAHPERLPAWARPLLVTAVVAAGVLAAAMWAPRHALAALCIVLALCVPVASLLGWCWCRSRGVRVVLLGMLGVSSGFFVVMVVRGQLPPSLALHTLLDLAVGIVAMLVFFLVQACRARWHKDRSSFGVRCAVLLLLTAGYVLFALLAIDRAGPVARLATTIGWSAGTLVLYFTWIFTMLPGEKAHGSRRASGGHRSASSSSSSSSSSSSSSSWSGGGGRSGGGGASGSW
>NZ_LT906480.1|WP_024957997.1|4684063_4685902_-|peptidase
MQAFRKHATTTAIAAVLAIASLSGAQAQSVHADDRAYFANATAEQAARDALGKRVDALRQASTLAPAERFRQAEVLEAQCLRHHSYLHLQAARNARDQRPAQALDQVMGLCSRIARSGRAALREAPADAPWAAPYGFLRARALKEAAAPANAALDEAVEALADPALDSFARLRGQILRSAEYPQIEHGGRHWDTGRDRQALARQPDRALREAGWKGYWQGLQSRREPMASVLLGLVQVNDAAARLQGDGSAPAHGYQRMGLDTAAVDATLVAIEQHAEDRRAYQEMLLHHAARSGIDAPQIWDTTVPDAGYTPPMLTLAQLRDNAADAMQHLGPAYVAELRALLDPASNRMDLATERGDRSQDAFSVSAPGVPAMLFVGVRSGDLESDVEIAHEAGHAVHGEWMQRGHASPLQRNGSQWLTEAFAIYNELRFRDQLYQQAQDPRAKAYYLKSLLDDMVLQLFTSSEEAQLERSIYQGVAAGTLGTADDLDALTGRVLARFGQQPERYPQLRNAWIGKRLMYEDPNYLVNYLYAGLLAVQLYVQDQRDPEEFRARYLAVLGEGFDRAPNEQVAQLLGHAPDWAALVDADLQVFNQTAAQLQALHARIEAGQGT
>NZ_LT906480.1|WP_024957998.1|4685975_4686488_-|hypothetical-protein
MCRYRSAALLMLACGVVLVACTPAPQPPQTAGEAGPAAAAPAITAAEPTPVAARSECPHPEFDTFLKHFGNEIGLQGKATADPLLDSYIDAEAEPEPRKVESRLALADVEWPVMPDPAALAGQGREIQISPLADGQRQVQIRMPDSSDQQTYTFAQTPCWTLVKREDESI
>NZ_LT906480.1|WP_024957999.1|4686570_4687197_+|hypothetical-protein
MHRLLLLIGLLLPALWPAVAMAVDVHEGDLLFVTAGRSGLSAAIDDATGKQGAPSFDHVALVASTPKGWEVLHADEKGSRRQSLVEFRQEARAKQRQIVVYRLHAPQQAAIKDAVATARTMLGKPYNTSYVLSEDSYYCSDFIERAFRAHHVFALQPMNFRNPQTGEIAQHWVDLYRGMGMDVPQDQPGTNPNDMSAAPVLQRVGVLE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT906480_15	15.1\|4675218\|83\|NZ_LT906480\|CRISPRCasFinder	4675218-4675300	83	NZ_LT906480.1	4675430-4675512	23	0.723

1. spacer 15.1|4675218|83|NZ_LT906480|CRISPRCasFinder matches to position: 4675430-4675512, mismatch: 23, identity: 0.723

agatcggaggtagatcgtggaatgggatgtgccgaccaacagtcggcacccacccgaccg	CRISPR spacer
agatcggaggtagatcgtggaatgggatgtgccgaccaacagtcggcacccacccgaccg	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906480_6	6.1\|1996331\|25\|NZ_LT906480\|CRISPRCasFinder	1996331-1996355	25	NZ_CP051294	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence	280981-281005	4	0.84
NZ_LT906480_6	6.1\|1996331\|25\|NZ_LT906480\|CRISPRCasFinder	1996331-1996355	25	NZ_CP033363	Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence	280968-280992	4	0.84
NZ_LT906480_14	14.1\|4538811\|27\|NZ_LT906480\|CRISPRCasFinder	4538811-4538837	27	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	432689-432715	5	0.815
NZ_LT906480_5	5.1\|1606338\|34\|NZ_LT906480\|CRISPRCasFinder	1606338-1606371	34	NC_011758	Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence	113343-113376	8	0.765
NZ_LT906480_5	5.1\|1606338\|34\|NZ_LT906480\|CRISPRCasFinder	1606338-1606371	34	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	78037-78070	9	0.735

1. spacer 6.1|1996331|25|NZ_LT906480|CRISPRCasFinder matches to NZ_CP051294 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077A, complete sequence) position: , mismatch: 4, identity: 0.84

atgaacgattgaagcatcacctgga	CRISPR spacer
ctgaacgattgaagcatcactggta	Protospacer
 *******************. * *

2. spacer 6.1|1996331|25|NZ_LT906480|CRISPRCasFinder matches to NZ_CP033363 (Mesorhizobium sp. NZP2077 plasmid pMSNZP2077NSa, complete sequence) position: , mismatch: 4, identity: 0.84

atgaacgattgaagcatcacctgga	CRISPR spacer
ctgaacgattgaagcatcactggta	Protospacer
 *******************. * *

3. spacer 14.1|4538811|27|NZ_LT906480|CRISPRCasFinder matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 5, identity: 0.815

acctgcagccaggcatggcctggctct	CRISPR spacer
tgatccagcaaggcatggcctggctct	Protospacer
   * **** *****************

4. spacer 5.1|1606338|34|NZ_LT906480|CRISPRCasFinder matches to NC_011758 (Methylorubrum extorquens CM4 plasmid pCMU01, complete sequence) position: , mismatch: 8, identity: 0.765

attttggcgatctggacgaagagcagtcgaccaa--	CRISPR spacer
acctgggcgatctggtcgaagagcaggcg--cagct	Protospacer
*..* ********** ********** **  **.

5. spacer 5.1|1606338|34|NZ_LT906480|CRISPRCasFinder matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 9, identity: 0.735

attttggcgatctggacgaagagcagtcgaccaa	CRISPR spacer
ttgtcggcgatctggtcgaagagcaggcggctgg	Protospacer
 * *.********** ********** **.*...

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

260892 : 317170

Stenotrophomonas_phage(80.49%)

tRNA,holin,capsid,transposase,portal,terminase,integrase,plate,head,tail

attL 253294:253325|attR 296987:297018

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
253294:253325	attL	NA	NA	NA	NA
WP_095052078.1\|260892_261309_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	5.3e-30	58.3
WP_024956203.1\|261669_264366_-	toprim domain-containing protein	V9IQW5	Stenotrophomonas_phage	0.0e+00	83.5
WP_024956202.1\|264469_265105_-	hypothetical protein	NA	NA	NA	NA
WP_095052080.1\|265254_265491_-	hypothetical protein	V9IQH4	Stenotrophomonas_phage	4.1e-11	52.0
WP_024956200.1\|265511_265820_-	hypothetical protein	V9IQM8	Stenotrophomonas_phage	2.4e-19	52.4
WP_024956199.1\|265819_266062_-	hypothetical protein	V9IQX5	Stenotrophomonas_phage	1.6e-23	67.5
WP_024956198.1\|266385_266592_-	hypothetical protein	V9IQL4	Stenotrophomonas_phage	5.5e-20	73.5
WP_032963111.1\|266658_267003_-	ogr/Delta-like zinc finger family protein	V9IQW3	Stenotrophomonas_phage	5.3e-36	62.8
WP_076738385.1\|266999_267332_-	hypothetical protein	A0A1B0VRL1	Pseudomonas_phage	1.7e-07	52.5
WP_050426929.1\|267476_267848_+	hypothetical protein	NA	NA	NA	NA
WP_024956196.1\|268232_269264_-	phage late control D family protein	V9IQM7	Stenotrophomonas_phage	4.6e-123	71.6
WP_024956195.1\|269260_269662_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	1.6e-52	79.4
WP_024956194.1\|269673_272538_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	0.0e+00	82.2
WP_169800875.1\|272560_272698_-	hypothetical protein	NA	NA	NA	NA
WP_032963109.1\|272710_272827_-\|tail	GpE family phage tail protein	V9IQH2	Stenotrophomonas_phage	8.9e-12	97.4
WP_024956193.1\|272835_273147_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	8.2e-36	83.2
WP_024956192.1\|273207_273717_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	2.7e-84	91.7
WP_024956191.1\|273737_274907_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	6.3e-145	65.2
WP_024956190.1\|274922_275273_-	GPW/gp25 family protein	V9IQW0	Stenotrophomonas_phage	2.6e-38	67.2
WP_024956189.1\|275269_275818_-\|plate	phage baseplate assembly protein V	V9IQH1	Stenotrophomonas_phage	7.0e-38	52.6
WP_024956188.1\|276105_277272_-\|tail	tail fiber protein	V9IQX0	Stenotrophomonas_phage	2.3e-54	48.3
WP_024956187.1\|277275_277827_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	3.6e-58	57.7
WP_024956186.1\|277819_278710_-\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	2.0e-106	66.2
WP_024956185.1\|278796_279258_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	2.1e-64	85.3
WP_024956184.1\|279254_279740_-\|tail	phage tail protein	V9IQM0	Stenotrophomonas_phage	2.0e-60	76.5
WP_024956183.1\|279736_280261_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	2.0e-50	70.2
WP_024956182.1\|280260_280896_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	1.4e-77	86.3
WP_024956181.1\|280897_281173_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	2.0e-33	76.7
WP_024956180.1\|281165_281525_-	membrane protein	V9IQG9	Stenotrophomonas_phage	2.1e-43	90.7
WP_024956179.1\|281527_281743_-\|tail	tail protein X	V9IQL8	Stenotrophomonas_phage	2.6e-17	62.0
WP_024956178.1\|281742_282210_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	1.7e-77	96.8
WP_024956177.1\|282314_283022_-\|terminase	terminase	V9IQK3	Stenotrophomonas_phage	2.9e-84	98.8
WP_024956176.1\|283024_284041_-\|capsid	phage major capsid protein, P2 family	V9IQV7	Stenotrophomonas_phage	2.0e-163	88.5
WP_024956175.1\|284074_284935_-\|capsid	GPO family capsid scaffolding protein	V9IQG8	Stenotrophomonas_phage	1.7e-118	96.1
WP_024956174.1\|285089_286847_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	0.0e+00	97.0
WP_024956173.1\|286846_287860_+\|portal	phage portal protein	V9IQW4	Stenotrophomonas_phage	2.5e-174	97.1
WP_076738492.1\|287856_288114_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	1.1e-41	97.6
WP_024956172.1\|288031_288742_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	2.6e-133	96.6
WP_024956171.1\|288807_289509_-	NYN domain-containing protein	NA	NA	NA	NA
WP_024956170.1\|290672_291017_+	hypothetical protein	NA	NA	NA	NA
WP_139338717.1\|291112_291643_-	hypothetical protein	NA	NA	NA	NA
WP_024956169.1\|291611_292712_-\|integrase	site-specific integrase	A0A2D1GMX8	Marinobacter_phage	8.2e-62	39.8
WP_032963106.1\|292837_293833_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_005407693.1\|294046_294421_+	hypothetical protein	NA	NA	NA	NA
WP_004136763.1\|294494_295178_+	response regulator transcription factor	NA	NA	NA	NA
WP_032963125.1\|295203_296628_+	sensor histidine kinase	NA	NA	NA	NA
WP_169922258.1\|297403_298195_-	zinc-dependent peptidase	NA	NA	NA	NA
296987:297018	attR	NA	NA	NA	NA
WP_005411956.1\|298161_298440_-	hypothetical protein	NA	NA	NA	NA
WP_024956165.1\|298584_299550_+	bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor	NA	NA	NA	NA
WP_005407698.1\|299546_300278_+	type III pantothenate kinase	NA	NA	NA	NA
WP_005411958.1\|300287_301142_+	SPOR domain-containing protein	NA	NA	NA	NA
WP_005407702.1\|301449_301755_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A141GEX6	Brucella_phage	1.1e-19	47.4
WP_005407703.1\|301795_302098_+	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	4.1e-08	39.3
WP_143568664.1\|302355_302655_-	hypothetical protein	NA	NA	NA	NA
WP_024956163.1\|302735_303143_-	hypothetical protein	NA	NA	NA	NA
WP_005411960.1\|303737_304508_+	DUF3011 domain-containing protein	NA	NA	NA	NA
WP_024956162.1\|304532_304880_-	hypothetical protein	NA	NA	NA	NA
WP_005407709.1\|305010_305931_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	6.4e-28	33.6
WP_005407710.1\|306091_306229_+	entericidin A/B family lipoprotein	NA	NA	NA	NA
WP_004153772.1\|306436_306658_+	CsbD family protein	NA	NA	NA	NA
WP_024956161.1\|306731_307541_-	hypothetical protein	NA	NA	NA	NA
WP_024956160.1\|307649_308942_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_024956159.1\|309109_309406_+	hypothetical protein	NA	NA	NA	NA
WP_024956158.1\|309649_310582_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_024956157.1\|310687_312340_+	M28 family peptidase	NA	NA	NA	NA
WP_024956156.1\|312523_312823_-	hypothetical protein	NA	NA	NA	NA
WP_005407717.1\|312890_314225_-	MFS transporter	Q6JIH2	Burkholderia_virus	6.5e-29	28.1
WP_024956155.1\|314446_315574_-	ABC transporter permease	NA	NA	NA	NA
WP_024956154.1\|315564_316302_-	ATP-binding cassette domain-containing protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-13	27.6
WP_099482019.1\|316288_317170_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

629923 : 641053

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012479083.1\|629923_630979_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.4e-79	46.2
WP_012479084.1\|630993_631881_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.7e-98	58.9
WP_024957341.1\|631877_632435_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.2e-46	51.1
WP_024957340.1\|632431_633337_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	4.1e-27	36.2
WP_044571172.1\|633457_634825_+	hypothetical protein	NA	NA	NA	NA
WP_024957338.1\|634877_636281_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.5e-39	27.9
WP_024957337.1\|636292_637639_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	2.9e-29	26.6
WP_024957336.1\|637735_641053_-	DEAD/DEAH box helicase	Q9YNZ9	Choristoneura_fumiferana_nuclear_polyhedrosis_virus	1.9e-45	30.0

DBSCAN-SWA_3

1017605 : 1153097

148

Pseudomonas_phage(35.29%)

transposase,lysis,integrase,plate,tail

attL 1007666:1007691|attR 1155920:1155945

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1007666:1007691	attL	NA	NA	NA	NA
WP_024957635.1\|1017605_1018367_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	1.4e-76	56.2
WP_024957634.1\|1018513_1019260_-	hypothetical protein	NA	NA	NA	NA
WP_024957633.1\|1019265_1021530_-	hypothetical protein	J9RWA5	Pseudomonas_phage	7.9e-136	39.5
WP_024957632.1\|1021522_1021750_-	hypothetical protein	NA	NA	NA	NA
WP_024957631.1\|1021749_1021980_-	hypothetical protein	A0A0S0MV97	Pseudomonas_phage	8.8e-19	62.7
WP_024957630.1\|1021990_1022773_-	DUF2163 domain-containing protein	D2K0A8	Staphylococcus_phage	2.9e-37	34.7
WP_024957629.1\|1022769_1024470_-	hypothetical protein	J9SU43	Pseudomonas_phage	5.1e-111	41.8
WP_024957628.1\|1024469_1025444_-	hypothetical protein	A0A0U2KZ01	Pseudomonas_phage	1.9e-09	25.6
WP_024957627.1\|1025451_1026426_-	hypothetical protein	A0A0S0N918	Pseudomonas_phage	3.4e-19	27.6
WP_024957626.1\|1026428_1029950_-	hypothetical protein	L7P7M2	Pseudomonas_phage	3.7e-39	26.7
WP_153857040.1\|1029952_1030093_-	hypothetical protein	NA	NA	NA	NA
WP_024957625.1\|1030134_1030644_-	hypothetical protein	NA	NA	NA	NA
WP_024957624.1\|1030643_1031399_-	hypothetical protein	J9SVZ4	Pseudomonas_phage	2.2e-18	28.9
WP_024957623.1\|1031402_1031624_-	hypothetical protein	NA	NA	NA	NA
WP_024957622.1\|1031620_1032097_-	hypothetical protein	A0A0S4L2X9	Pseudomonas_phage	3.6e-30	44.7
WP_024957621.1\|1032093_1032627_-	DUF1320 domain-containing protein	Q5ZQX5	Pseudomonas_phage	5.2e-30	42.2
WP_024957620.1\|1032636_1033131_-	hypothetical protein	NA	NA	NA	NA
WP_024957619.1\|1033292_1034237_-	hypothetical protein	R9U4B8	Rhizobium_phage	2.9e-68	43.5
WP_024957618.1\|1034262_1034604_-	DUF2190 family protein	NA	NA	NA	NA
WP_143566002.1\|1034626_1035742_-	peptidase	J9SGT4	Pseudomonas_phage	5.5e-66	48.8
WP_024957616.1\|1036128_1036698_-	phage virion morphogenesis protein	J9SU29	Pseudomonas_phage	2.3e-20	38.5
WP_024957615.1\|1036697_1037975_-	hypothetical protein	J9STS2	Pseudomonas_phage	5.2e-84	60.1
WP_024957614.1\|1037978_1039505_-	DUF935 family protein	Q5ZQY4	Pseudomonas_phage	4.2e-165	57.4
WP_024957613.1\|1039501_1041238_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	1.7e-101	44.0
WP_050426959.1\|1041238_1041787_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	2.6e-24	38.7
WP_049397751.1\|1041800_1042061_-	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	1.8e-23	60.5
WP_024957610.1\|1042120_1042438_-	hypothetical protein	Q5ZQY8	Pseudomonas_phage	6.0e-10	39.4
WP_024957609.1\|1042434_1042941_-\|lysis	lysis protein	NA	NA	NA	NA
WP_024957608.1\|1042940_1043459_-	lysozyme	U3TK98	Ralstonia_phage	7.1e-24	41.4
WP_024957607.1\|1043677_1044097_-	hypothetical protein	NA	NA	NA	NA
WP_024957606.1\|1044175_1044547_-	helix-turn-helix domain-containing protein	A0A2H4JFL3	uncultured_Caudovirales_phage	2.9e-11	39.8
WP_024957605.1\|1044660_1044870_+	hypothetical protein	NA	NA	NA	NA
WP_024957604.1\|1044866_1045100_+	hypothetical protein	NA	NA	NA	NA
WP_008267142.1\|1045096_1045390_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024957603.1\|1045389_1046322_+	hypothetical protein	A4JWN3	Burkholderia_virus	2.2e-20	34.4
WP_024957602.1\|1046323_1048126_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A4JWN2	Burkholderia_virus	8.5e-125	45.5
WP_024957601.1\|1048122_1049298_+	AAA family ATPase	Q6QIE1	Burkholderia_phage	6.2e-100	53.2
WP_024957600.1\|1049299_1049698_+	hypothetical protein	NA	NA	NA	NA
WP_024957599.1\|1049699_1049936_+	hypothetical protein	NA	NA	NA	NA
WP_024957598.1\|1049928_1050168_+	hypothetical protein	NA	NA	NA	NA
WP_024957597.1\|1050167_1050476_+	hypothetical protein	NA	NA	NA	NA
WP_024957596.1\|1050477_1050867_+	hypothetical protein	NA	NA	NA	NA
WP_024957595.1\|1050856_1051132_+	hypothetical protein	NA	NA	NA	NA
WP_024957594.1\|1051124_1051352_+	hypothetical protein	NA	NA	NA	NA
WP_024957593.1\|1051348_1051828_+	hypothetical protein	NA	NA	NA	NA
WP_024957592.1\|1051827_1052082_+	hypothetical protein	NA	NA	NA	NA
WP_024957591.1\|1052078_1052690_+	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	3.7e-64	62.1
WP_024957590.1\|1052691_1053384_+	hypothetical protein	NA	NA	NA	NA
WP_024957589.1\|1053370_1054276_+	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	5.5e-40	33.8
WP_024957588.1\|1054284_1054653_+	DUF2528 family protein	NA	NA	NA	NA
WP_024957587.1\|1054645_1054852_+	hypothetical protein	NA	NA	NA	NA
WP_154699832.1\|1054851_1055028_+	hypothetical protein	NA	NA	NA	NA
WP_024957586.1\|1055024_1055489_+	regulatory protein GemA	A0A0M5MRZ7	Ralstonia_phage	1.3e-16	40.2
WP_152907779.1\|1055485_1055842_+	hypothetical protein	J9SGX4	Pseudomonas_phage	2.4e-07	37.7
WP_005408281.1\|1056679_1057084_+	hypothetical protein	A0A1C9C5K8	Heterosigma_akashiwo_virus	1.3e-17	35.3
WP_012479274.1\|1057161_1058208_-	glycosyltransferase family 9 protein	NA	NA	NA	NA
WP_024958155.1\|1058228_1058978_+	3-deoxy-D-manno-octulosonic acid kinase	NA	NA	NA	NA
WP_005408284.1\|1058977_1059745_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005408285.1\|1059741_1060131_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_005408286.1\|1060606_1060924_+	quaternary ammonium compound efflux SMR transporter SugE	NA	NA	NA	NA
WP_038645586.1\|1061282_1072187_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA
WP_024956128.1\|1072243_1072687_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_032963083.1\|1073061_1073436_+	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_024956126.1\|1073815_1075879_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.1e-47	41.4
WP_005408298.1\|1075885_1076206_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_024956125.1\|1076317_1076917_+	recombination protein RecR	NA	NA	NA	NA
WP_005408300.1\|1076984_1077344_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_005408301.1\|1077421_1077949_-	membrane protein	NA	NA	NA	NA
WP_024956124.1\|1077945_1079895_-	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_005408303.1\|1079887_1080832_-	DUF58 domain-containing protein	NA	NA	NA	NA
WP_024956122.1\|1080834_1081788_-	AAA family ATPase	NA	NA	NA	NA
WP_024956121.1\|1081830_1083672_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_024956120.1\|1083919_1084489_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_012479287.1\|1084602_1085112_+	DUF177 domain-containing protein	NA	NA	NA	NA
WP_005408308.1\|1085219_1085414_+	50S ribosomal protein L32	NA	NA	NA	NA
WP_005408309.1\|1085505_1086483_+	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_005408310.1\|1086561_1087344_+	hypothetical protein	NA	NA	NA	NA
WP_024956119.1\|1087583_1088528_+	ACP S-malonyltransferase	NA	NA	NA	NA
WP_005408312.1\|1088610_1089354_+	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	4.7e-13	32.3
WP_005408313.1\|1089506_1089746_+	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-10	44.6
WP_005412446.1\|1089889_1091152_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_024956118.1\|1091342_1092707_+	aminodeoxychorismate synthase component I	NA	NA	NA	NA
WP_024956117.1\|1092905_1093967_+	endolytic transglycosylase MltG	NA	NA	NA	NA
WP_005408317.1\|1093963_1094629_+	dTMP kinase	W8D0J5	Erwinia_phage	5.5e-21	34.9
WP_024956116.1\|1094625_1095582_+	DNA polymerase III subunit delta'	NA	NA	NA	NA
WP_005412452.1\|1095578_1095932_+	PilZ domain-containing protein	NA	NA	NA	NA
WP_024956115.1\|1096351_1096732_+	tautomerase family protein	NA	NA	NA	NA
WP_024956114.1\|1096762_1097836_-\|tail	phage tail protein	D5LGY1	Escherichia_phage	8.4e-96	52.2
WP_005408322.1\|1097826_1098042_-\|tail	phage tail protein	A0A193GYC8	Enterobacter_phage	1.6e-14	54.3
WP_005408323.1\|1098025_1098493_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	1.1e-15	35.2
WP_024956113.1\|1098495_1100943_-\|tail	phage tail tape measure protein	A0A1W6JT50	Escherichia_phage	1.6e-25	23.0
WP_005412456.1\|1101063_1101354_-\|tail	phage tail assembly protein	A0A193GYZ8	Enterobacter_phage	1.5e-18	58.5
WP_005412457.1\|1101434_1101938_-\|tail	phage major tail tube protein	A0A193GYM4	Enterobacter_phage	1.4e-40	51.2
WP_024956112.1\|1101940_1103143_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A088FVH5	Escherichia_phage	3.6e-127	54.2
WP_012479299.1\|1103249_1103909_-	hypothetical protein	V9IQM3	Stenotrophomonas_phage	6.2e-17	32.9
WP_024956111.1\|1103910_1105878_-\|tail	tail fiber domain-containing protein	V9IQX0	Stenotrophomonas_phage	1.8e-104	38.9
WP_024956110.1\|1105885_1106665_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.2e-43	50.6
WP_024956109.1\|1106657_1107554_-\|plate	baseplate J/gp47 family protein	V5YTH6	Pseudomonas_phage	1.2e-79	56.1
WP_005408332.1\|1107556_1107895_-	GPW/gp25 family protein	A0A193GYY8	Enterobacter_phage	7.8e-32	62.2
WP_024956108.1\|1107947_1108538_-\|plate	phage baseplate assembly protein V	A0A193GYL5	Enterobacter_phage	3.6e-24	37.7
WP_024956107.1\|1108534_1109089_-	hypothetical protein	NA	NA	NA	NA
WP_158079763.1\|1109213_1109357_+	hypothetical protein	NA	NA	NA	NA
WP_024956106.1\|1109441_1109819_-	hypothetical protein	NA	NA	NA	NA
WP_024956105.1\|1109815_1110301_-	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	6.0e-41	55.0
WP_024956104.1\|1110297_1110648_-	hypothetical protein	NA	NA	NA	NA
WP_005408338.1\|1110644_1111094_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_005408339.1\|1111428_1111812_-	hypothetical protein	NA	NA	NA	NA
WP_024956103.1\|1111964_1112603_-	hypothetical protein	A0A2H4J8A1	uncultured_Caudovirales_phage	2.0e-20	37.6
WP_024956102.1\|1112644_1112872_-	hypothetical protein	NA	NA	NA	NA
WP_024956101.1\|1113223_1115560_-	toprim domain-containing protein	D5LH15	Escherichia_phage	6.2e-136	43.1
WP_024956100.1\|1116046_1116271_+	hypothetical protein	NA	NA	NA	NA
WP_005408345.1\|1116282_1116537_+	hypothetical protein	NA	NA	NA	NA
WP_024956099.1\|1116748_1117135_+	DUF2946 domain-containing protein	NA	NA	NA	NA
WP_024956098.1\|1117263_1119402_+	TonB-dependent receptor	NA	NA	NA	NA
WP_024956097.1\|1119413_1120919_+	PepSY domain-containing protein	NA	NA	NA	NA
WP_024956096.1\|1120928_1122062_-	MFS transporter	NA	NA	NA	NA
WP_024956095.1\|1122073_1122850_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_024956094.1\|1123007_1123655_+	Qnr family pentapeptide repeat protein	NA	NA	NA	NA
WP_024956093.1\|1123658_1124333_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_024956092.1\|1124420_1125119_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_024956091.1\|1125234_1126179_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024956090.1\|1126117_1127497_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_005412480.1\|1127630_1128494_+	DMT family transporter	NA	NA	NA	NA
WP_024956089.1\|1128652_1129534_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_024956088.1\|1129572_1130451_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024956087.1\|1130464_1131364_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	9.5e-08	21.2
WP_024956086.1\|1131471_1132989_+	MFS transporter	NA	NA	NA	NA
WP_005408360.1\|1133268_1133673_-	GFA family protein	NA	NA	NA	NA
WP_005408361.1\|1133844_1134819_+	DUF4105 domain-containing protein	NA	NA	NA	NA
WP_024956085.1\|1134818_1136840_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_024956084.1\|1136928_1138350_-	MFS transporter	NA	NA	NA	NA
WP_005412484.1\|1138379_1138814_+	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
WP_024956083.1\|1138886_1139489_-	short chain dehydrogenase	NA	NA	NA	NA
WP_024956082.1\|1139587_1140463_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024956081.1\|1140639_1141461_-	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_024956080.1\|1141479_1142157_-	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004147099.1\|1142244_1143282_+	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_005408369.1\|1143382_1144525_+	PilT/PilU family type 4a pilus ATPase	NA	NA	NA	NA
WP_024956079.1\|1144732_1145716_+	aldo/keto reductase	NA	NA	NA	NA
WP_024956078.1\|1145763_1146663_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_005412490.1\|1146756_1146966_+	DUF4287 domain-containing protein	NA	NA	NA	NA
WP_024956077.1\|1147076_1147784_+	YitT family protein	NA	NA	NA	NA
WP_024956076.1\|1147867_1148413_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_024956075.1\|1148409_1150197_-	DUF4153 domain-containing protein	NA	NA	NA	NA
WP_005408377.1\|1150288_1150855_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_005408378.1\|1150847_1151342_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_024956074.1\|1151357_1152308_+	aspartate carbamoyltransferase catalytic subunit	NA	NA	NA	NA
WP_005408380.1\|1152605_1153097_+\|transposase	transposase	NA	NA	NA	NA
1155920:1155945	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2063164 : 2076893

Pseudomonas_phage(50.0%)

capsid,portal,terminase,head,tail,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024956453.1\|2063164_2064058_+	helix-turn-helix domain-containing protein	A0A0U4IBP5	Pseudomonas_phage	6.7e-30	41.0
WP_024956454.1\|2064047_2064710_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	4.8e-25	38.8
WP_024956455.1\|2064706_2064904_+	hypothetical protein	NA	NA	NA	NA
WP_024956456.1\|2064903_2065272_+	hypothetical protein	NA	NA	NA	NA
WP_024956457.1\|2065268_2065478_+	hypothetical protein	NA	NA	NA	NA
WP_024956458.1\|2065467_2065896_+	hypothetical protein	NA	NA	NA	NA
WP_024956459.1\|2066077_2066365_+	hypothetical protein	NA	NA	NA	NA
WP_024956460.1\|2066430_2066919_+	glycoside hydrolase family 104 protein	D5LH07	Escherichia_phage	3.7e-67	78.8
WP_024956461.1\|2066915_2067230_+	hypothetical protein	NA	NA	NA	NA
WP_024956462.1\|2067368_2067740_+	hypothetical protein	NA	NA	NA	NA
WP_024956464.1\|2068540_2068885_+	hypothetical protein	Q3HQZ9	Burkholderia_phage	6.7e-39	66.7
WP_024956465.1\|2069047_2069311_+	hypothetical protein	NA	NA	NA	NA
WP_024956466.1\|2069310_2069709_+	HNH endonuclease	A0A2H4PHY5	Pseudomonas_phage	1.4e-11	45.1
WP_024956467.1\|2069787_2070168_+	hypothetical protein	Q9XJT7	Pseudomonas_phage	9.7e-31	53.2
WP_024956468.1\|2070171_2071842_+\|terminase	terminase large subunit	A0A0U4B0C7	Pseudomonas_phage	1.7e-223	69.0
WP_024956469.1\|2071841_2073146_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	5.9e-43	29.9
WP_024956470.1\|2073132_2073867_+\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	4.5e-48	50.0
WP_024956471.1\|2073935_2075180_+\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	6.3e-95	46.8
WP_024956472.1\|2075237_2075642_+	hypothetical protein	NA	NA	NA	NA
WP_024956473.1\|2075645_2076068_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_024956474.1\|2076064_2076397_+\|head	phage head closure protein	B5WZS5	Pseudomonas_phage	1.4e-12	36.4
WP_005408963.1\|2076389_2076893_+	HK97 gp10 family phage protein	Q8W6U1	Burkholderia_virus	4.3e-10	32.5

DBSCAN-SWA_5

2533269 : 2540357

Stenotrophomonas_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_024957387.1\|2533269_2534388_-	sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	5.0e-59	38.1
WP_024957388.1\|2534374_2534944_-	hypothetical protein	S0F2J2	Stenotrophomonas_phage	5.5e-38	70.1
WP_024957389.1\|2535076_2535310_+	hypothetical protein	S0F3S0	Stenotrophomonas_phage	2.6e-10	69.6
WP_024957390.1\|2535299_2536406_+	replication initiation factor domain-containing protein	S0F3I3	Stenotrophomonas_phage	1.3e-189	86.1
WP_005413368.1\|2536410_2536710_+	hypothetical protein	S0F3B2	Stenotrophomonas_phage	8.4e-46	94.9
WP_024957392.1\|2537409_2538135_+	hypothetical protein	Q4LAU2	Stenotrophomonas_phage	1.2e-21	63.2
WP_024957393.1\|2538134_2538419_+	DUF2523 domain-containing protein	NA	NA	NA	NA
WP_024957394.1\|2538415_2539633_+	hypothetical protein	A0A077JGB2	Xanthomonas_phage	4.8e-39	31.6
WP_143568600.1\|2539646_2539964_-	hypothetical protein	NA	NA	NA	NA
WP_024957395.1\|2540033_2540357_-	hypothetical protein	S0F2C0	Stenotrophomonas_phage	1.3e-52	95.3

DBSCAN-SWA_6

3429070 : 3468903

Acidithiobacillus_phage(45.71%)

tRNA,capsid,portal,terminase,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032964312.1\|3429070_3429919_+	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTT7	Clostridium_phage	4.1e-05	33.3
WP_024958079.1\|3430038_3430788_+	hypothetical protein	NA	NA	NA	NA
WP_076738371.1\|3430877_3431093_+	hypothetical protein	NA	NA	NA	NA
WP_024958077.1\|3431089_3431563_+	DUF2924 domain-containing protein	K4I3X1	Acidithiobacillus_phage	1.4e-34	51.4
WP_024958076.1\|3431559_3432972_+	recombinase family protein	K4ICM1	Acidithiobacillus_phage	6.2e-139	59.3
WP_024958075.1\|3432968_3433433_+	hypothetical protein	K4HZX2	Acidithiobacillus_phage	2.4e-15	37.3
WP_020200569.1\|3433607_3433871_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024958074.1\|3433882_3434359_+	hypothetical protein	K4HZ96	Acidithiobacillus_phage	4.3e-52	63.9
WP_024958073.1\|3434364_3434646_+	hypothetical protein	NA	NA	NA	NA
WP_024958072.1\|3434648_3435407_+	hypothetical protein	K4I1D2	Acidithiobacillus_phage	8.6e-87	68.1
WP_095052067.1\|3435403_3436267_+	ATP-binding protein	K4HZX9	Acidithiobacillus_phage	1.8e-109	70.9
WP_024958070.1\|3436272_3436902_+	hypothetical protein	K4ICM8	Acidithiobacillus_phage	1.9e-79	69.9
WP_024958069.1\|3436911_3437400_+	hypothetical protein	K4I3X7	Acidithiobacillus_phage	4.1e-74	81.8
WP_024958068.1\|3437396_3438134_+\|tRNA	isoleucyl-tRNA synthetase	K4HZA0	Acidithiobacillus_phage	2.8e-106	73.4
WP_024958067.1\|3438130_3438358_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_024958066.1\|3438350_3440642_+	hypothetical protein	K4HZY1	Acidithiobacillus_phage	3.0e-292	64.5
WP_024958065.1\|3440767_3441232_+	hypothetical protein	K4ICN3	Acidithiobacillus_phage	5.1e-58	71.8
WP_024958064.1\|3441233_3441437_+	hypothetical protein	NA	NA	NA	NA
WP_024958063.1\|3441429_3441816_+	hypothetical protein	NA	NA	NA	NA
WP_032964308.1\|3442144_3443578_+	site-specific DNA-methyltransferase	K4I3Y2	Acidithiobacillus_phage	3.5e-166	61.3
WP_024958062.1\|3443574_3444816_+	site-specific DNA-methyltransferase	A0A2H4JGF1	uncultured_Caudovirales_phage	1.2e-215	89.4
WP_024958061.1\|3444760_3445000_-	hypothetical protein	NA	NA	NA	NA
WP_024958060.1\|3444999_3445362_-	hypothetical protein	A0A2H4JI44	uncultured_Caudovirales_phage	2.8e-59	88.3
WP_024958059.1\|3445459_3445819_-	hypothetical protein	NA	NA	NA	NA
WP_024958058.1\|3445948_3446512_-	DUF3489 domain-containing protein	A0A2H4JE21	uncultured_Caudovirales_phage	6.9e-33	74.3
WP_024958057.1\|3446606_3446804_-	hypothetical protein	NA	NA	NA	NA
WP_024958056.1\|3446921_3447458_+	hypothetical protein	A0A2H4JCL4	uncultured_Caudovirales_phage	5.2e-78	86.5
WP_024958055.1\|3447457_3449419_+\|terminase	phage terminase large subunit family protein	A0A2H4JIC6	uncultured_Caudovirales_phage	0.0e+00	90.2
WP_024958054.1\|3449436_3449928_+	hypothetical protein	A0A0F6WCR7	Sinorhizobium_phage	5.9e-28	50.6
WP_024958053.1\|3449927_3450320_+	hypothetical protein	NA	NA	NA	NA
WP_024958052.1\|3450319_3450541_+	hypothetical protein	A0A2H4JCJ9	uncultured_Caudovirales_phage	6.9e-13	56.2
WP_024958051.1\|3450543_3452076_+\|portal	phage portal protein	A0A1B2LRR5	Wolbachia_phage	9.1e-152	57.5
WP_024958050.1\|3452077_3453385_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	1.3e-66	52.9
WP_024958049.1\|3453388_3453766_+\|head	head decoration protein	A0A1B2LRT0	Wolbachia_phage	2.5e-26	52.0
WP_024958048.1\|3453840_3454863_+\|capsid	major capsid protein	Q9JMM2	Wolbachia_phage	8.0e-120	62.7
WP_024958047.1\|3454862_3455141_+	hypothetical protein	NA	NA	NA	NA
WP_024958046.1\|3455151_3455577_+	hypothetical protein	F4YCS3	Synechococcus_phage	3.6e-10	31.7
WP_032964302.1\|3455584_3455797_+	hypothetical protein	NA	NA	NA	NA
WP_024958045.1\|3455799_3456552_+	hypothetical protein	A0A2D2W2E0	Stenotrophomonas_phage	2.1e-56	49.2
WP_024958044.1\|3456551_3456953_+	hypothetical protein	NA	NA	NA	NA
WP_169800872.1\|3456982_3457138_+	hypothetical protein	NA	NA	NA	NA
WP_024958043.1\|3457141_3457783_+	hypothetical protein	NA	NA	NA	NA
WP_024958042.1\|3457782_3460488_+\|tail	tail protein	A0A0U2BXT9	Paracoccus_phage	4.7e-26	33.3
WP_024958041.1\|3460493_3461552_+	hypothetical protein	NA	NA	NA	NA
WP_024958040.1\|3461548_3463132_+	hypothetical protein	NA	NA	NA	NA
WP_024958039.1\|3463137_3463926_+	DUF2163 domain-containing protein	A0A0S0MV27	Pseudomonas_phage	5.5e-28	33.5
WP_009521704.1\|3463944_3464172_+	hypothetical protein	A0A2D0W9G1	Bordetella_phage	1.5e-10	71.1
WP_032964326.1\|3464201_3464384_+	hypothetical protein	A0A2D0W982	Bordetella_phage	2.6e-10	60.4
WP_024958037.1\|3464383_3466654_+\|tail	tail assembly protein	A0A0S0MX47	Pseudomonas_phage	2.1e-128	38.2
WP_024958036.1\|3466653_3467250_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_024958035.1\|3467253_3467604_+	DUF2793 domain-containing protein	A0A1X9IAR6	Xanthomonas_phage	5.4e-36	58.6
WP_020200523.1\|3467669_3467975_+	hypothetical protein	K4I011	Acidithiobacillus_phage	4.1e-24	64.6
WP_024958034.1\|3467971_3468448_+	hypothetical protein	K4ICR8	Acidithiobacillus_phage	3.9e-77	89.2
WP_032964294.1\|3468444_3468903_+	lysozyme	K4I410	Acidithiobacillus_phage	2.3e-63	79.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906480

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection