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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT906461 Bordetella hinzii strain NCTC13200 chromosome 1 3 crisprs DEDDh,DinG,PrimPol,csa3,WYL 1 2 3 0

Results visualization

1. NZ_LT906461
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906461_1 1029796-1029897 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906461_2 1029976-1030116 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906461_3 1030201-1030430 Orphan NA
4 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_LT906461_2 2.1|1029999|16|NZ_LT906461|CRISPRCasFinder 1029999-1030014 16 NZ_LT906461.1 2087232-2087247 0 1.0

1. spacer 2.1|1029999|16|NZ_LT906461|CRISPRCasFinder matches to position: 2087232-2087247, mismatch: 0, identity: 1.0

ttggaggcgccgccgc	CRISPR spacer
ttggaggcgccgccgc	Protospacer
****************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT906461_3 3.2|1030266|25|NZ_LT906461|CRISPRCasFinder 1030266-1030290 25 NC_012987 Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence 116740-116764 2 0.92
NZ_LT906461_3 3.2|1030266|25|NZ_LT906461|CRISPRCasFinder 1030266-1030290 25 NZ_CP031163 Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence 151581-151605 4 0.84
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP010991 Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence 45761-45791 7 0.774
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 354803-354833 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP036488 Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence 4539-4569 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP032297 Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence 35678-35708 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NC_017060 Rahnella aquatilis HX2 plasmid PRA1, complete sequence 45450-45480 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NC_015062 Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence 45311-45341 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP034838 Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence 45408-45438 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP034839 Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence 45408-45438 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP034837 Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence 45313-45343 8 0.742
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP053443 Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence 129196-129226 9 0.71
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 550932-550962 9 0.71
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP050106 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence 299300-299330 10 0.677
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP049319 Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence 553242-553272 10 0.677
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 291814-291844 10 0.677
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP050111 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence 299484-299514 10 0.677
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 748834-748864 10 0.677
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 179921-179951 10 0.677
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP034542 Brevibacillus sp. SCSIO 07484 plasmid unnamed, complete sequence 37792-37822 10 0.677
NZ_LT906461_3 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder 1030377-1030407 31 NZ_CP050088 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence 437444-437474 10 0.677

1. spacer 3.2|1030266|25|NZ_LT906461|CRISPRCasFinder matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 2, identity: 0.92

ccggcgctgccgcctgtttggggcg	CRISPR spacer
ccggcgccgccgcctgtttgggggg	Protospacer
*******.*************** *

2. spacer 3.2|1030266|25|NZ_LT906461|CRISPRCasFinder matches to NZ_CP031163 (Deinococcus wulumuqiensis strain NEB 479 plasmid pDrdI, complete sequence) position: , mismatch: 4, identity: 0.84

ccggcgctgccgcctgtttggggcg	CRISPR spacer
gcggcgctgccgcctgttggggctg	Protospacer
 ***************** *** .*

3. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP010991 (Pseudonocardia sp. EC080625-04 plasmid pFRP1-2, complete sequence) position: , mismatch: 7, identity: 0.774

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
tcgccggtcgcgtcgccggcgttctacgggc	Protospacer
.******.***** ********** * * * 

4. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgctggccgcgtggccggcgttcgtttccg	Protospacer
****.********.**********.   . *

5. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgcccgccgcgtaaccggcgttgcgcatga	Protospacer
***** ********.********  . .**.

6. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgcccgccgcgtaaccggcgttgcgcatga	Protospacer
***** ********.********  . .**.

7. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NC_017060 (Rahnella aquatilis HX2 plasmid PRA1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgcccgccgcgtaaccggcgttgcgcatga	Protospacer
***** ********.********  . .**.

8. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NC_015062 (Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgcccgccgcgtaaccggcgttgcgcatga	Protospacer
***** ********.********  . .**.

9. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgcccgccgcgtaaccggcgttgcgcatga	Protospacer
***** ********.********  . .**.

10. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgcccgccgcgtaaccggcgttgcgcatga	Protospacer
***** ********.********  . .**.

11. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 8, identity: 0.742

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgcccgccgcgtaaccggcgttgcgcatga	Protospacer
***** ********.********  . .**.

12. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP053443 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eC, complete sequence) position: , mismatch: 9, identity: 0.71

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgccggccgcattgccggcgttgccaattc	Protospacer
***********.* *********   ..*  

13. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.71

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
acgccgtccgcgaagccggcgttcttgtaca	Protospacer
 ***** ***** ***********  *   .

14. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgccggccgcattgccggcgttgccaactc	Protospacer
***********.* *********   ...  

15. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ttgccggccaggtagccggcgttcaccaacc	Protospacer
..*******. **************  .   

16. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgccggccgcattgccggcgttgccaactc	Protospacer
***********.* *********   ...  

17. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgccggccgcattgccggcgttgccaactc	Protospacer
***********.* *********   ...  

18. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgccggccgcattgccggcgttgccaactc	Protospacer
***********.* *********   ...  

19. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgccggccgcattgccggcgttgccaactc	Protospacer
***********.* *********   ...  

20. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP034542 (Brevibacillus sp. SCSIO 07484 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
acgctggccgcgaagccggcgttccgcaacc	Protospacer
 ***.******* *********** . .   

21. spacer 3.4|1030377|31|NZ_LT906461|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 10, identity: 0.677

ccgccggccgcgtagccggcgttcaaggtgg	CRISPR spacer
ccgccggccgcattgccggcgttgccaactc	Protospacer
***********.* *********   ...  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1585990 : 1650055 67 Acidithiobacillus_phage(28.21%) terminase,capsid,portal,transposase,tail,protease,head NA
DBSCAN-SWA_2 2899067 : 2906817 7 uncultured_Caudovirales_phage(16.67%) protease NA
DBSCAN-SWA_3 2958019 : 3009465 69 Pseudomonas_phage(32.56%) integrase,terminase,capsid attL 2951648:2951665|attR 3012605:3012622
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage