CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906457	Legionella spiritensis strain NCTC11990 chromosome 1	0 crisprs	cas3,DEDDh,DinG,WYL	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

737674 : 792765

Alteromonas_phage(12.5%)

transposase,tRNA,protease,integrase

attL 767421:767436|attR 796814:796829

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058482295.1\|737674_738346_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_082642704.1\|738358_739507_+	M42 family metallopeptidase	NA	NA	NA	NA
WP_058482260.1\|739606_740983_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_058482259.1\|741152_742307_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_058482258.1\|742307_743222_+\|protease	protease modulator HflC	R4VJU7	Alteromonas_phage	9.0e-06	26.8
WP_058482257.1\|743467_744763_+	adenylosuccinate synthase	A0A2R8FF47	Brazilian_cedratvirus	1.1e-68	35.2
WP_058482256.1\|745103_746225_+	hypothetical protein	NA	NA	NA	NA
WP_058482255.1\|746741_748274_-	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_058482254.1\|748587_749154_-	hypothetical protein	NA	NA	NA	NA
WP_058482293.1\|749258_750737_-	adenosine deaminase	NA	NA	NA	NA
WP_058482252.1\|751068_752394_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	3.4e-22	25.5
WP_058482251.1\|752489_753626_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_058482250.1\|753609_755157_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_058482249.1\|755517_756252_+	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	1.8e-25	45.5
WP_058482248.1\|756244_757054_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_058482247.1\|757044_758397_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_058482246.1\|758647_760960_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_058482245.1\|761071_761572_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_058482244.1\|761575_762610_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_058482242.1\|762792_763251_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_058482241.1\|763240_764011_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_058482292.1\|764030_764411_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_058482240.1\|764407_764704_+	DUF190 domain-containing protein	NA	NA	NA	NA
WP_058482239.1\|764730_766014_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-96	45.5
WP_058482238.1\|766056_767415_+	fused MFS/spermidine synthase	NA	NA	NA	NA
767421:767436	attL	NA	NA	NA	NA
WP_058484822.1\|768073_769693_-	hypothetical protein	NA	NA	NA	NA
WP_058484825.1\|769930_770677_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_058484821.1\|770716_772021_+	M24 family peptidase	NA	NA	NA	NA
WP_133141193.1\|772032_772329_+	hypothetical protein	NA	NA	NA	NA
WP_058484819.1\|772339_773332_+	thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
WP_058484818.1\|773328_774324_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_058484817.1\|774313_775333_+	hypothetical protein	NA	NA	NA	NA
WP_082642854.1\|775417_776824_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_058484816.1\|776830_777847_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	8.4e-21	26.3
WP_058484823.1\|777848_778727_-	phytanoyl-CoA dioxygenase family protein	NA	NA	NA	NA
WP_058484815.1\|778886_780074_-	hypothetical protein	NA	NA	NA	NA
WP_058484814.1\|780204_781299_+	hypothetical protein	NA	NA	NA	NA
WP_065238448.1\|781732_782611_+	Abi family protein	NA	NA	NA	NA
WP_058484812.1\|782765_783989_+\|integrase	site-specific integrase	H2BDD9	Pseudomonas_virus	3.0e-25	29.2
WP_058484811.1\|784130_784805_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_095140564.1\|786223_786880_+	endonuclease	NA	NA	NA	NA
WP_095140566.1\|786964_788155_-	sel1 repeat family protein	NA	NA	NA	NA
WP_095140567.1\|788439_789888_-	SEL1-like repeat protein	NA	NA	NA	NA
WP_082642812.1\|790470_791325_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_095140569.1\|791559_792765_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	8.7e-49	46.0
796814:796829	attR	NA	NA	NA	NA

DBSCAN-SWA_2

858930 : 868994

Micromonas_pusilla_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058484083.1\|858930_860880_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	1.2e-148	50.6
WP_058484082.1\|861155_862292_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	3.6e-28	30.9
WP_058484081.1\|862410_863535_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.9e-54	37.0
WP_058484080.1\|863555_864704_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.4e-126	59.0
WP_162264433.1\|864745_866062_+	adenosylhomocysteinase	S4W1G4	Pandoravirus	1.8e-52	31.4
WP_058484078.1\|866170_867175_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_058484077.1\|867311_868994_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	4.6e-16	30.1

DBSCAN-SWA_3

1263274 : 1270182

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058482181.1\|1263274_1264045_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	4.2e-57	51.6
WP_058482182.1\|1264041_1265064_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	5.8e-78	44.5
WP_058482183.1\|1265050_1265623_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	8.0e-53	52.6
WP_058482184.1\|1265625_1266351_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.6e-21	27.0
WP_058482185.1\|1266347_1266863_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_058482186.1\|1266855_1267428_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_058482187.1\|1267424_1267952_-	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	2.9e-25	47.0
WP_058482188.1\|1267967_1268930_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.1e-38	32.5
WP_058482190.1\|1269384_1270182_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.2e-23	33.2

DBSCAN-SWA_4

1447956 : 1507234

Bacillus_virus(16.67%)

transposase,protease,bacteriocin,integrase

attL 1481021:1481075|attR 1491579:1491633

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058482596.1\|1447956_1448910_-\|protease	protease SohB	NA	NA	NA	NA
WP_058482519.1\|1449059_1449662_+	heme ABC exporter ATP-binding protein CcmA	G3M9Y6	Bacillus_virus	4.2e-12	26.6
WP_058482520.1\|1449658_1450339_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_162264419.1\|1450412_1451174_+	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_058482522.1\|1451170_1451338_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_058482523.1\|1451334_1451781_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_058482524.1\|1451781_1453737_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_058482525.1\|1453736_1454273_+	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_058482526.1\|1454269_1454671_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_058482527.1\|1454663_1455323_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_058482528.1\|1455360_1455567_+	dodecin domain-containing protein	NA	NA	NA	NA
WP_058482529.1\|1455847_1456795_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_095140548.1\|1457065_1458216_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_058482532.1\|1458311_1460153_-	DNA helicase RecQ	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	8.8e-85	38.3
WP_058482533.1\|1460496_1461651_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_058482534.1\|1461663_1462440_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_058482535.1\|1462443_1463505_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_058482536.1\|1463673_1465515_-	hypothetical protein	NA	NA	NA	NA
WP_058482537.1\|1465724_1467305_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	2.3e-09	31.4
WP_065238371.1\|1467368_1467749_-	hypothetical protein	NA	NA	NA	NA
WP_058482539.1\|1467931_1468639_-	hypothetical protein	NA	NA	NA	NA
WP_095140548.1\|1468927_1470078_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_095140593.1\|1470376_1471537_+	hypothetical protein	NA	NA	NA	NA
WP_058483588.1\|1471781_1473338_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_058483589.1\|1473484_1474882_-	NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta	NA	NA	NA	NA
WP_058483590.1\|1474905_1475202_-	NAD(P) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_058483591.1\|1475194_1476334_-	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_157737714.1\|1476555_1478739_+	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	1.4e-25	31.8
WP_082642782.1\|1478814_1479960_+	multidrug DMT transporter permease	NA	NA	NA	NA
WP_058483593.1\|1480402_1480825_+	hypothetical protein	NA	NA	NA	NA
1481021:1481075	attL	NA	NA	NA	NA
WP_133141205.1\|1481257_1481596_+	hypothetical protein	NA	NA	NA	NA
WP_058483852.1\|1481776_1482982_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	8.7e-49	46.0
WP_058483333.1\|1483137_1483401_-	hypothetical protein	NA	NA	NA	NA
WP_058483334.1\|1483658_1485413_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.3e-58	30.5
WP_058483335.1\|1485490_1485739_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058483563.1\|1486264_1486924_+	NERD domain-containing protein	A0A2R2ZH57	Clostridioides_phage	2.5e-13	28.3
WP_058483337.1\|1487378_1487660_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_058483338.1\|1487669_1487993_+	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	1.4e-06	36.8
WP_058483339.1\|1488669_1488918_-	hypothetical protein	NA	NA	NA	NA
WP_058483340.1\|1489131_1490127_-	virulence protein RhuM/Fic/DOC family protein	Q9JMN3	Wolbachia_phage	3.0e-23	41.5
WP_058483341.1\|1490167_1491412_-\|integrase	tyrosine-type recombinase/integrase	A0A0R6PHM8	Moraxella_phage	7.1e-54	33.5
WP_058483342.1\|1491670_1492858_-	HipA domain-containing protein	NA	NA	NA	NA
1491579:1491633	attR	NA	NA	NA	NA
WP_058483343.1\|1492850_1493099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_058483344.1\|1493634_1494330_+	thiopurine S-methyltransferase	NA	NA	NA	NA
WP_133141134.1\|1494502_1495051_-	hypothetical protein	NA	NA	NA	NA
WP_058483346.1\|1495389_1495686_-	hypothetical protein	NA	NA	NA	NA
WP_058483347.1\|1496137_1496614_+	hypothetical protein	NA	NA	NA	NA
WP_058483348.1\|1496836_1498219_+	hypothetical protein	NA	NA	NA	NA
WP_058483564.1\|1498334_1499390_-	saccharopine dehydrogenase NADP-binding domain-containing protein	NA	NA	NA	NA
WP_058483349.1\|1499595_1501281_-	hypothetical protein	NA	NA	NA	NA
WP_058483350.1\|1501644_1503783_-	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	7.2e-14	31.6
WP_058483351.1\|1503779_1505957_-	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	4.8e-21	24.0
WP_058483352.1\|1505953_1507234_-\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA

DBSCAN-SWA_5

2129796 : 2138948

Staphylococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058482931.1\|2129796_2130624_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	1.5e-52	43.9
WP_058482932.1\|2130620_2132261_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	2.8e-151	52.3
WP_058482933.1\|2132496_2132964_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-23	47.1
WP_058482934.1\|2132977_2134186_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.9e-98	47.6
WP_058482935.1\|2134182_2134797_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.0e-21	34.2
WP_058482936.1\|2134781_2135855_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.8e-38	31.6
WP_082642737.1\|2136007_2137450_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_058482938.1\|2137616_2138948_-	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	3.1e-07	32.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage