CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906441	Cutibacterium granulosum strain NCTC11865 chromosome 1	10 crisprs	csa3,cas3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,DinG,DEDDh,WYL	0	20	1	0

1. NZ_LT906441

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906441_1

• CRISPR_ID: NZ_LT906441_1
• CRISPR_location: 227414-227503
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT906441_1

Consensus_repeat	Method
GGCCACGCTCGTCCACAGACGGTCAGGCG	CRISPRCasFinder

spacers of NZ_LT906441_1

>1.1|227443|32|NZ_LT906441|CRISPRCasFinder
GTTCTCTCATCCGCCGCTTCAACTCTTTGCGC

CRISPR arrays and Neighbor proteins around NZ_LT906441_1

CRISPR arrays

The CRISPR arrays of NZ_LT906441_1

>merge|NZ_LT906441|1|227414-227503|CRISPRCasFinder
GGCCACGCTCGTCCACAGACGGTCAGGCGGTTCTCTCATCCGCCGCTTCAACTCTTTGCGCGGCCACGCTCGTCCACAGACGGTCGGGCG

>NZ_LT906441|1|1|227414-227503|CRISPRCasFinder
GGCCACGCTCGTCCACAGACGGTCAGGCG	GTTCTCTCATCCGCCGCTTCAACTCTTTGCGC
GGCCACGCTCGTCCACAGACGGTCGGGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_081658992.1|213636_214938_-|chlorite-dismutase-family-protein	unknown	unknown	gnl|CDD|377705
NZ_LT906441.1|WP_095140905.1|223127_224144_+|porphobilinogen-synthase	unknown	unknown	gnl|CDD|236450
NZ_LT906441.1|WP_157738696.1|219000_220482_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|237009
NZ_LT906441.1|WP_095141045.1|232364_233189_+|DUF2891-family-protein	unknown	unknown	gnl|CDD|378592
NZ_LT906441.1|WP_036977726.1|216087_217380_-|glutamyl-tRNA-reductase	unknown	unknown	gnl|CDD|234592
NZ_LT906441.1|WP_065860386.1|230637_231540_-|TIGR01777-family-protein	unknown	unknown	gnl|CDD|187553
NZ_LT906441.1|WP_095141044.1|225770_226532_+|A/G-specific-adenine-glycosylase	unknown	unknown	gnl|CDD|224115
NZ_LT906441.1|WP_157738700.1|237507_238779_+|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl|CDD|223722
NZ_LT906441.1|WP_065860389.1|217963_219004_+|uroporphyrinogen-decarboxylase	unknown	unknown	gnl|CDD|238368
NZ_LT906441.1|WP_081658997.1|228721_230062_-|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl|CDD|129794
NZ_LT906441.1|WP_157738698.1|233174_234032_-|DUF3883-domain-containing-protein	unknown	unknown	gnl|CDD|379021
NZ_LT906441.1|WP_036956993.1|238843_239521_-|cell-division-topological-specificity-factor-MinE	unknown	unknown	unknown
NZ_LT906441.1|WP_065860387.1|224269_225580_+|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl|CDD|234607
NZ_LT906441.1|WP_065860556.1|226844_227402_+|hypothetical-protein	unknown	unknown	gnl|CDD|235825
NZ_LT906441.1|WP_021104060.1|236919_237243_-|Lsr2-family-protein	unknown	unknown	gnl|CDD|378714
NZ_LT906441.1|WP_095140904.1|221279_222401_+|hydroxymethylbilane-synthase	unknown	unknown	gnl|CDD|234612
NZ_LT906441.1|WP_065860384.1|234123_236652_-|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl|CDD|214361
NZ_LT906441.1|WP_021105127.1|239576_240095_-|DUF3180-domain-containing-protein	unknown	unknown	gnl|CDD|378650
NZ_LT906441.1|WP_065860388.1|222397_223135_+|uroporphyrinogen-III-synthase	unknown	unknown	gnl|CDD|119440
NZ_LT906441.1|WP_095140906.1|227707_228685_-|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl|CDD|223777

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_081658992.1|213636_214938_-|chlorite-dismutase-family-protein	gnl|CDD|377705	pfam06778, Chlor_dismutase, Chlorite dismutase. This family contains chlorite dismutase enzymes of bacterial and archaeal origin. This enzyme catalyzes the disproportionation of chlorite into chloride and oxygen. Note that many family members are hypothetical proteins.	1.91602e-77
NZ_LT906441.1|WP_095140905.1|223127_224144_+|porphobilinogen-synthase	gnl|CDD|236450	PRK09283, PRK09283, porphobilinogen synthase.	0
NZ_LT906441.1|WP_157738696.1|219000_220482_+|FAD-dependent-oxidoreductase	gnl|CDD|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	4.56585e-49
NZ_LT906441.1|WP_095141045.1|232364_233189_+|DUF2891-family-protein	gnl|CDD|378592	pfam11199, DUF2891, Protein of unknown function (DUF2891). This is a bacterial family of uncharacterized proteins.	7.91491e-84
NZ_LT906441.1|WP_036977726.1|216087_217380_-|glutamyl-tRNA-reductase	gnl|CDD|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	1.47073e-64
NZ_LT906441.1|WP_065860386.1|230637_231540_-|TIGR01777-family-protein	gnl|CDD|187553	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8. This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.52004e-114
NZ_LT906441.1|WP_095141044.1|225770_226532_+|A/G-specific-adenine-glycosylase	gnl|CDD|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	2.23941e-75
NZ_LT906441.1|WP_157738700.1|237507_238779_+|NADH-quinone-oxidoreductase-subunit-D	gnl|CDD|223722	COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion].	2.9607e-61
NZ_LT906441.1|WP_065860389.1|217963_219004_+|uroporphyrinogen-decarboxylase	gnl|CDD|238368	cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP).	1.43351e-156
NZ_LT906441.1|WP_081658997.1|228721_230062_-|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.17033e-69
NZ_LT906441.1|WP_157738698.1|233174_234032_-|DUF3883-domain-containing-protein	gnl|CDD|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	1.28371e-22
NZ_LT906441.1|WP_065860387.1|224269_225580_+|glutamate-1-semialdehyde-2,1-aminomutase	gnl|CDD|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_LT906441.1|WP_065860556.1|226844_227402_+|hypothetical-protein	gnl|CDD|235825	PRK06547, PRK06547, hypothetical protein; Provisional.	1.18488e-49
NZ_LT906441.1|WP_021104060.1|236919_237243_-|Lsr2-family-protein	gnl|CDD|378714	pfam11774, Lsr2, Lsr2. Lsr2 is a small, basic DNA-bridging protein present in Mycobacterium and related actinomycetes. It is a functional homolog of the H-NS-like proteins. H-NS proteins play a role in nucleoid organisation and also function as a pleiotropic regulator of gene expression.	2.14023e-45
NZ_LT906441.1|WP_095140904.1|221279_222401_+|hydroxymethylbilane-synthase	gnl|CDD|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	2.41642e-123
NZ_LT906441.1|WP_065860384.1|234123_236652_-|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl|CDD|214361	CHL00095, clpC, Clp protease ATP binding subunit.	0
NZ_LT906441.1|WP_021105127.1|239576_240095_-|DUF3180-domain-containing-protein	gnl|CDD|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	6.39456e-20
NZ_LT906441.1|WP_065860388.1|222397_223135_+|uroporphyrinogen-III-synthase	gnl|CDD|119440	cd06578, HemD, Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.	1.76058e-40
NZ_LT906441.1|WP_095140906.1|227707_228685_-|rhomboid-family-intramembrane-serine-protease	gnl|CDD|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	2.82361e-33

Protein sequences

>NZ_LT906441.1|WP_065860556.1|226844_227402_+|hypothetical-protein
MTPQGKDSTMCDVLDLIDARVTDHARPVVLVDGRSGAGKTTLAAQLAARHPNWQLVHADDIYPGWTGLSGVWDLTSLWNPEPSYLSWDWYQMCHGSRVPLDAHLPMIVEGAGVLTPANRAHATLGVWCELDAPTRRGRALRRDPEFQAYWAMWAIQEGLHIARNRPTELADLTVDCAAKDGAPAR
>NZ_LT906441.1|WP_095141044.1|225770_226532_+|A/G-specific-adenine-glycosylase
MLVSEVMSQQTPVARVIGPWTEWMQRWPTPDDLAEEEPGTAVAAWGRLGYPRRALRLHACAVAIATQHDGQVPSDRDELVSLPGIGDYTAAAVVSFAFGGRAVVLDTNVRRLIARAECGIGNCPSSLTRAERELASGLVPDDAPARWAVASMELGALVCTARSPHCTECPIAGSCRWLAAGRPDNAPTRRAQPWKGTDRQCRGVIMDVVRNCPDGVPVETTLSAWPHRDQAEHCLDWLVADGLLHRTDDTVRL
>NZ_LT906441.1|WP_065860387.1|224269_225580_+|glutamate-1-semialdehyde-2,1-aminomutase
MSTNAELFDQAKKVIPGGVDSPVRAYGSVGGVPRFIDHAQGPWIWDAEGHRYVDLVCTWGPALLGHAHPKVVQAVKDAAEKGLSFGAPTRTETMLADEIRSRVDPVQKVRFVSTGTEATMTAVRLARGATGRDVIVKFAGLYHGHSDALLAAAGSGVATAGLPGSAGVPAASTADTLVLPYNDVDALEQAFAERGDEIAGVIVESTPANMGVVPPLPGFCTAIRKLTAEHDAIMIVDEVLAGFRCSAAGYWGVLDRDGEHFVPDLFTFGKVVGGGMPLAALGGRAEVMDLLAPTGPVYQAGTLSGNPLATIAGLTTLQLADAGVYTRLDARSEQWRDALHGALGRAGVPHQINNAASLFSVFLGCEQPVHDYEGAKSQNAEAYSAFFHSMLDDGVNLPPSCFEAWFLSDAHDEETFEVFTAALPAACEAAAKVIGG
>NZ_LT906441.1|WP_095140905.1|223127_224144_+|porphobilinogen-synthase
MTDTTIKPLPEILRPLVRPRRLRTTPAMRRMVAETRVSPAQLMLPAFVAEGLTEPREISAMPWQYQHTLDSIKKLAEQAAEAGIAGIDLFGVPTEKDEIGSQAWNPEGILNKGIAAVRDAVGDDLVICTDTCLDEFTSHGHCGALTEDGRVDNDATLPLYAAMAVSQARAGAHVVSPSGMMDGQIAVIREALDDAGFTDVAILAYSAKYASAFFGPFREAVDCSLKGDRKAYQQDPANRIEGMRETLLDVAEGADMVMVKPASHYLDVLSDVAAEVTIPVAAYQVSGEYAMLESAAAKGWIDRRRCISESLTSIVRAGADIVLTYWAIEAAGWLREEF
>NZ_LT906441.1|WP_065860388.1|222397_223135_+|uroporphyrinogen-III-synthase
MSTQAVLPPVLVPRKSSHDRIGTALKQHGFGVIHAAVTRIVTLPDAEKLHEEATWQADWLVVTSANTVRMLPPDRLTRAREGGMRVAAVGRATARALAGLGVKADLVPQTQSGAGLVDAWSEEGARVLLPVSQLAAPTVPEGLAAKGCHVNRVDAYTSEALEELPEVVVQAWPALAAVVVTSSSVARALAHLTEQAGLAWTRQQPIAIGGPTAATLAELGYPAAAVAAAPTPEGILTATLGVIHD
>NZ_LT906441.1|WP_095140904.1|221279_222401_+|hydroxymethylbilane-synthase
MGDMTVIRLGTRASALATTQSQTVADLLTAQGLQVELFHVTTDGDTSTASLRQMGGTGVFATAIRYALIGSQCDVAVHSFKDLPTAQPIGLRVAAVPPREDPRDALVARDSLTLDELPKGAKVGTGSPRRFAQLLAQRPDLQIVDIRGNVDTRLGRVKGLGRYAKGGGREDLDAVILACAGLERLGHAGLITERLSTDVLMPAPAQGALAVECRNADSLHGPLAKALQAIDDRPSHLAALAERAVLNRLGAGCAAPVGAHATLTEGGPDKTAQPDVLHLQAVVCSLDGTKQVRKEASIELPPLTEHFAAAYGIGEKLAEDLLDAGAGEITDLSASRSTPANPDVHDSASAIRSSEAHSDTPGTQTAAGSKEGR
>NZ_LT906441.1|WP_157738696.1|219000_220482_+|FAD-dependent-oxidoreductase
MRNVDAVVIGGGMAGLVAAWQLTQAGLKPVLVESRGYTGGLVAGSQLAGIAYDIGAEGWATRRPDTSQLATELGLVVEPPVRQPSWVWFDDGAFAMPSDAVLGIPSDVTSTDVVTAIGGTAADLAAGLDSRPVPDEVPESLGELVRTRLGEEVLTRLVGPIAGGIHAAVPDLLSADVVAPGLRAALVRTGSLQQAVAAQVRARGDSQVVASVAGGMFRMPQTLHEQIEAAGGQILTRTGAKSISASPTGLEPGASPTTAGAANVPTPDGHDAQGGRWLVTTAATSRNPNPSLPPIPDGEPVTYCTDRVIVACSAAPALDLLSGVIDVTGPALTAGAPIAHVNLALQAPELDGAPRGGGMLVAPGSTTVKAKALTHLSRKWPSLGASCPSHVHLVRVSYGRKGEKAVPLSVEQALTDASVLFGVKLTSDQLLDSAIIHWDGALAPTTPRTRAWVQELHARLEKVPGLALTGAWASGSGIGALVPHARTAARKLA
>NZ_LT906441.1|WP_065860389.1|217963_219004_+|uroporphyrinogen-decarboxylase
MNTPALLAAMTGQRPDHHPVWFMRQAGRSLPEYRAAREGTTMLQSCLTPDLAAEITCQPVRRHKVDAAVLYSDIMVPLALAGVGVHIEPGVGPVVDEPIRTAADVAKLTSIPAGDAAVVEQAAKLVVDELGEATPLIGFAGAPFTIAAYLVAGRPSRDHLAARAMMHSDPQAWGELMDWVARLDAAFLAAQVAGGARAVQLFDSWAGSLSAGDYRSHVAPHSLRALAELDRKLPMVHFGVNATHLLDEMAQVVAQSSTHPVMGVDHRITLSDAAATLMVSGLDMPLQGNINPALLLAGWDALEAETRAVVAAGAQTEGHIVNLGHGVPAQTDPEVLTRLVELVHSL
>NZ_LT906441.1|WP_036977726.1|216087_217380_-|glutamyl-tRNA-reductase
MSVDHAQEGMAVVSAAAASVEGLAVRLTDAPQVRGAMVLSTCNRVAVVMETDLSDEQLRALVAELDAPTLAADGKLLRDDEAVWRLFRVASGLESMVTGEREIAGQLKRALSEARKESTVSYLIGHVVEEALKTSRKVATHTGLASQGRTVVAVGLDLVSRTTPLEGARVVVLGTGSYAGASCAQLVNRGVSQIAVASARGRAEDFAESHEVAAIAPDDLIDELATADLVVACRGRKTAALDRATATQVMAQRDGRPLPVLDLAVGGDVELPAPEGIEVINLVDISAAVPDSTEKDRRAAEKIVADGVHGLALDLERRRMAPAVVALRDVLTDLVEAEVAKLPAEGEVSVEDATRSLRRLAASIAHIPSARARIASEQGLGDRWLNSLTDVLGIDVDLPAPIIDLSDTGSQDDLKCPVTGLTVRDLAPKS
>NZ_LT906441.1|WP_081658992.1|213636_214938_-|chlorite-dismutase-family-protein
MAGCCLRGDGSPCRPAISGSDELPQESTSMDHDDAPARVRVDHRDDAPSQGGSHAIDGPRASADSGHSSEAAAEPAADPSARGAAGSQADPAPIPVVALAGEAAPAGRKLTDEPAPASGDDSASAASTPSTPARSADHVDEDENDVVVAPARAASEHDLPGRAERLSQEPAGQGAPHEVVTDQPTASDEVPEGSYTEPTDPRDHSVIPAEVNQASLWAMYSVFKVSKPLPASGDRRAAIVSESTAWVDESGVETRGWYDLGGLRADADVLVWWTADTPEALQDAYHRLRGSALGAYLEPVWSSLAVHRPAEFNKRHLPSCFAGVAPRRWAAFYPFVRTKDWYLLDPAERSTMLREHGIAGARSTDVKASTLASFALGDYEWILALEGDDLSRVVDVMKDLRYVEARRYVAIDIPFYTGERVEPQVWADRQQHR
>NZ_LT906441.1|WP_095140906.1|227707_228685_-|rhomboid-family-intramembrane-serine-protease
MSDHPSPHQPESGGSSSWQSDDTSPEQGPASPSPDWQTPPPSGAQPWGGGSDGQPQLSQPRADAPKPDRSQPDPAWAPPQAAQMSDSRSGRSRATSRGRRRRSRTTTSQTPVVTYTIIAICVIVWLAELVFPGFVDQIILVPALGATQPWRFVTSAFAHAPEIAHILFNMYALWALGRALEIFLGRARYIAAYALSALAGGVVYVAMASPGSDGAVLPSWGQGVLGASGAIFGLFGVLLVVQRKLGLSNRSLWVVLALNFGLAFFFPGIAWQAHVGGFLAGLASGWIFFDDANRVSRGSRPATWRRMGVLTLALLAIAVVKYLLV
>NZ_LT906441.1|WP_081658997.1|228721_230062_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MILVDATIVTTAMPAIIHNLHTDLDGGVWVTSAYLLTYAVPLLISGRLGDRFGTRNIYAIGMTIFTLASLACGLSGTIGMLITCRAVQGIGAALMAPQSMTLITQLFPPRIRGAAMGVWGGVAGVAGFVGPILGGVLVDSLGWEWIFLVNVPIGVIGLWRALVAVPVMPRTAAKLDWWGMILSGIAMSLIVFGIQEGQTYDWGVITGIISVPLLIALGVVFLGLFVWYERRMERRDAQPLVPLGLFRNRNFTLGNAAIFFVGANVSSFSLITALYLQTACGLTPTKAALLLATTAVATAICSPFAGRILQRRRSGRIGLVGTLTVTACSLLWFLLMTPTTPLWVFSLIGAVMGAGSSFVWSPVSLTTTHDLRLDVAGAGSGVNNAIRQVGSVLGSALIAAVMDWRLVATHGDLSRGFGQSMLVPAIEMGLAALVVAFFADFKASSD
>NZ_LT906441.1|WP_065860386.1|230637_231540_-|TIGR01777-family-protein
MRVAIGGSTGLIGAALATRLREEGHDVVTLTRHEPSQPSDRRWDPSSLSIDPPCLDDVDAVVNLAGAPIAGSRWTDDYKDTLVSSRVNSTRLVVQALESSSRCRIFLSGSAVGFYGAHCGDRWLYEDDRSGSGFLAQVCRSWEEAAASAPQRVRVATLRTGQVISPSGGFLGKERPLFQFGLGGKVGDGRQYLSWISLDDHVSAMVKILTDDTITGPVNLTGPAPATNAQFTKALAKALHRPAVVSFPTPIAKAVLGPELVDETICAGQRVKPAKLLDHGFEFRDTTIAESIASALAQRR
>NZ_LT906441.1|WP_095141045.1|232364_233189_+|DUF2891-family-protein
MLAAQCEVARPAETRHVVATGAPSTSDGSSQRSCASATTFLTALSGATETRQTNEQEADTVPEATDWAEATGIVTKQVFANLMAWLPNLTMPVRTGTHDNTAFGIGLCLDAARVLGRTDVVAAIVEHSHRFFDADRDYPVEWEPSGHDFLSAGLSEAHLMARVFQVEGRGEEFGGWLSAFLPRLGQAGDTLLTVPDVLDGTDGRLAHLYGLSLSRAWQLRALAPWLDEDVQRRIAQVTARQVSAVEPQISDGDFMATHWLVSFAVQAELASSKY
>NZ_LT906441.1|WP_157738698.1|233174_234032_-|DUF3883-domain-containing-protein
MARRDVWTAEENAATVAAYLDMLAQELAGQPYVKSHQRQKLMEMFGRSRGAYEMKFANISAILRDMHCLYIKGYKPRGNFQHSLADEIRKQLYADSNKVLLNLMQTSVSAQATERMDIAWTTSKMPDRVLVEYGGMAHRQGGVHTDYVALEAANTSLGMAGELAVLERERTRLREGGRADLADQVEHVSQTKGDGLGYDIKSYDLHERERHIEVKTTRRDINWPMIVSRNEVRVSREQPQNYVLARVYQFAAKKIGLYELPGDINVTCDLEPITFEALPKQSVLA
>NZ_LT906441.1|WP_065860384.1|234123_236652_-|ATP-dependent-Clp-protease-ATP-binding-subunit
MFERFSDRARRVVVLAQDEAKALNHNYIGTEHLLLGLVSEGEGVAAKALTSLGISLEAVRAQVEEIIGRGTTTPTGHIPFTPRAKKVLELSLREALQMNHSYIGTEHLLLGLIREGEGVAAQVLIRLGADLNTVRNTVLQLLQGDDGKQAATAGAPEAGPSQSPATVLDQFGRNLTQQAREGKLDPVIGREKEIERVMVVLSRRTKNNPVLIGEPGVGKSACVEGLAQAIVRGDVPETLRDKQIYSLDLGSMVAGSRYRGDFEERMKKVLKEINNRGDIILFIDEIHNLVGAGAAEGAIDAASILKPMLARGELQTVGATTLDEYRKYIEKDAALERRFQPIQVAEPSIPLAIEILKGLRDRYENHHKITITDEAITAAANLAARYVQDRYLPDKAIDLIDEAGARMRIRRMTAPPDLREFDDRLAEVRTEKEAAIDAQDFERAAALRDDEKKLSAEREAKEEEWKQGDSAVPAVVGEEEIAEVLSGATGIPVFKLTEEESQRLLHMEDEIGKRYVGQEDAVKALARSIRRTRAGLKDPKRPAGSFIFAGPSGVGKTELTKALTEFLFGDEDALITLDMSEYSEKHTASRMFGSPPGFVGYEEGGQLTEKVRRKPFSVILFDEIEKAHPDIFNSLLQILDEGRLTDAQGRVVDFKNTVIVMTTNLGSRDISKTVNLGFSRADDEVASYEKMKSKVSEELKSHFRPEFLNRLDEIIVFHQLGQDDILRIVDLMIGQLEGRLADRSIGIEVTSAAKKLLAKRGFDPLLGARPLRRAIQRDVEDPLAERILFGEVKSGQIVVVDAAPEGSEEPFTFAGTDRSVAPDQVPEELTAGSGDECGQQEG
>NZ_LT906441.1|WP_021104060.1|236919_237243_-|Lsr2-family-protein
MAQRVRVDLVDDIDGSAAEESVEFALDGVSYVIDLSTENAAELRETLAKWTKSARRTGGRHSRGRRAAAVGGPSANDIRRWARQQGMEVSDRGRVSNEVREAYAAAH
>NZ_LT906441.1|WP_157738700.1|237507_238779_+|NADH-quinone-oxidoreductase-subunit-D
MGAIHADVSSCKNSRGTADGGSADTPSTRAPHRRVHLDLGPDHPSQAGLVTISCCTCQDPGSQYDDRIAAGRMHIGHLHRGVEKLFEVRDYRQIPMLASRHDWHAPFIGEAGAAMAIEKALGIDAPPRAMHVRTILIEFSRMTSHLAFLSWLPWRVADFSCSGRVHHLLDTAHDLWEGFCGNRIHPMTCRIGGTAHDVTPVFTASLNTWCVHAAALSDELRSLLNGPAGACTRGVAVIPADAVTSFGLSGPVARASGVPMDLRCPNAARRRTSRSETTTSWRAEDSRDAPRHLAYDQVNFPVVDAPTEGDAHSRLSWLCAEVRQSADLVTTLLQSLPDGELATRLPTTLKVPAGRVWSRLEAPWGRAGYLLDSRGTTSPWRLALRTPTFANVQVLEHLLPTLSVEQLEPAVASLGWTLGDLDK
>NZ_LT906441.1|WP_036956993.1|238843_239521_-|cell-division-topological-specificity-factor-MinE
MVHVSGVQKKVESKRGKSATPERRNVLILLIVATVVAVACAVFPSVWMARVGTLIALAAAWVSTDLALREVNSLREAHFVELRDMRHQSAEMERRHHAESMEMIDTFAQRVGALSETLATTRSKLDRAENEMMTLRGDKAALQYKVAEGNKRVRELQERIVALETQLDTEMAKAFEGSHARTVTDAGVPTAGDIWTASNDSTIVDLSRVAFPNLDEDDVAERRQA
>NZ_LT906441.1|WP_021105127.1|239576_240095_-|DUF3180-domain-containing-protein
MTRELPQNWPDHHETPPPHGNLTPTTSRQVWVALLSGAVLGWFVLSIYTVTDSIVPVLPMSTPIILAVIAVAVWVDSRLLAAKVADEKREVSPTEGLVSLALGKALVLTGAALGGASIVYVLANIAHLDIPSPRQRVVMGSVTVVVCALLSVSGWQLEKACRVPKDPDGKDT

Crispr_ID: NZ_LT906441_2

• CRISPR_ID: NZ_LT906441_2
• CRISPR_location: 331462-331548
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT906441_2

Consensus_repeat	Method
GGCAGACCTGCTCGGCTGAACGTT	CRISPRCasFinder

spacers of NZ_LT906441_2

>2.1|331486|39|NZ_LT906441|CRISPRCasFinder
CGTCCTACGCGGCAGCCCCCTACCGGGTGGGAGGGGGCA

CRISPR arrays and Neighbor proteins around NZ_LT906441_2

CRISPR arrays

The CRISPR arrays of NZ_LT906441_2

>merge|NZ_LT906441|2|331462-331548|CRISPRCasFinder
GGCAGACCTGCTCGGCTGAACGTTCGTCCTACGCGGCAGCCCCCTACCGGGTGGGAGGGGGCAGGCAGACCTGCTCGACTGAACGTT

>NZ_LT906441|2|2|331462-331548|CRISPRCasFinder
GGCAGACCTGCTCGGCTGAACGTT	CGTCCTACGCGGCAGCCCCCTACCGGGTGGGAGGGGGCA
GGCAGACCTGCTCGACTGAACGTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_021105189.1|320148_321483_-|tryptophan-synthase-subunit-beta	unknown	unknown	gnl|CDD|183851
NZ_LT906441.1|WP_095141051.1|337167_339183_+|KUP/HAK/KT-family-potassium-transporter	unknown	unknown	gnl|CDD|376906
NZ_LT906441.1|WP_157738702.1|324092_324608_+|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379163
NZ_LT906441.1|WP_065860987.1|345115_346117_+|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl|CDD|176180
NZ_LT906441.1|WP_065860988.1|346316_347732_+|argininosuccinate-synthase	unknown	unknown	gnl|CDD|235434
NZ_LT906441.1|WP_065860989.1|347828_349151_+|MFS-transporter	unknown	unknown	gnl|CDD|340883
NZ_LT906441.1|WP_081659007.1|332439_333066_+|uracil-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234653
NZ_LT906441.1|WP_065860999.1|344422_344911_-|hypothetical-protein	unknown	unknown	gnl|CDD|285278
NZ_LT906441.1|WP_065860983.1|321981_322968_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_065860981.1|317469_318714_-|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|366166
NZ_LT906441.1|WP_065860982.1|319039_320107_-|hypothetical-protein	unknown	unknown	gnl|CDD|250634
NZ_LT906441.1|WP_021105191.1|323756_324050_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl|CDD|227737
NZ_LT906441.1|WP_021105194.1|327258_328593_-|oligosaccharide-flippase-family-protein	unknown	unknown	gnl|CDD|225153
NZ_LT906441.1|WP_095141052.1|340883_342683_+|LCP-family-protein	unknown	unknown	gnl|CDD|224235
NZ_LT906441.1|WP_065860985.1|334589_336959_-|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl|CDD|340853
NZ_LT906441.1|WP_021103968.1|330653_331328_-|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl|CDD|274869
NZ_LT906441.1|WP_065860997.1|325040_326594_-|potassium/proton-antiporter	unknown	unknown	gnl|CDD|235410
NZ_LT906441.1|WP_036957086.1|329919_330390_-|nucleoside-deaminase	unknown	unknown	gnl|CDD|223663
NZ_LT906441.1|WP_065860986.1|339230_339986_-|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl|CDD|176506
NZ_LT906441.1|WP_095141053.1|342786_344049_-|galactokinase	unknown	unknown	gnl|CDD|223231

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_021105189.1|320148_321483_-|tryptophan-synthase-subunit-beta	gnl|CDD|183851	PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.	0
NZ_LT906441.1|WP_095141051.1|337167_339183_+|KUP/HAK/KT-family-potassium-transporter	gnl|CDD|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
NZ_LT906441.1|WP_157738702.1|324092_324608_+|LytR-C-terminal-domain-containing-protein	gnl|CDD|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	5.28593e-16
NZ_LT906441.1|WP_065860987.1|345115_346117_+|NAD(P)H-quinone-oxidoreductase	gnl|CDD|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	5.07358e-161
NZ_LT906441.1|WP_065860988.1|346316_347732_+|argininosuccinate-synthase	gnl|CDD|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LT906441.1|WP_065860989.1|347828_349151_+|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.26225e-13
NZ_LT906441.1|WP_081659007.1|332439_333066_+|uracil-phosphoribosyltransferase	gnl|CDD|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	7.51746e-114
NZ_LT906441.1|WP_065860999.1|344422_344911_-|hypothetical-protein	gnl|CDD|285278	pfam08006, DUF1700, Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and putative membrane proteins.	0.00107885
NZ_LT906441.1|WP_065860981.1|317469_318714_-|alpha/beta-fold-hydrolase	gnl|CDD|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	3.01495e-10
NZ_LT906441.1|WP_065860982.1|319039_320107_-|hypothetical-protein	gnl|CDD|250634	pfam01456, Mucin, Mucin-like glycoprotein. This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide.	0.0043663
NZ_LT906441.1|WP_021105191.1|323756_324050_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl|CDD|227737	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription].	6.44421e-09
NZ_LT906441.1|WP_021105194.1|327258_328593_-|oligosaccharide-flippase-family-protein	gnl|CDD|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	3.53059e-13
NZ_LT906441.1|WP_095141052.1|340883_342683_+|LCP-family-protein	gnl|CDD|224235	COG1316, LytR, Transcriptional regulator [Transcription].	7.92875e-26
NZ_LT906441.1|WP_065860985.1|334589_336959_-|glycogen/starch/alpha-glucan-phosphorylase	gnl|CDD|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_LT906441.1|WP_021103968.1|330653_331328_-|tRNA-adenosine-deaminase-associated-protein	gnl|CDD|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	1.09939e-29
NZ_LT906441.1|WP_065860997.1|325040_326594_-|potassium/proton-antiporter	gnl|CDD|235410	PRK05326, PRK05326, potassium/proton antiporter.	1.08103e-176
NZ_LT906441.1|WP_036957086.1|329919_330390_-|nucleoside-deaminase	gnl|CDD|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.83807e-57
NZ_LT906441.1|WP_065860986.1|339230_339986_-|glycerophosphodiester-phosphodiesterase	gnl|CDD|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	2.03212e-98
NZ_LT906441.1|WP_095141053.1|342786_344049_-|galactokinase	gnl|CDD|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	2.78073e-113

Protein sequences

>NZ_LT906441.1|WP_021103968.1|330653_331328_-|tRNA-adenosine-deaminase-associated-protein
MGTDRDDEFTDDEDFAASDDVSVDDASDDDVDDLTDSEELDLADDDDFDDGDDDYYSDDDYDDLEDASDDEIDFVVALYADDGERTSAPLDLQLANDLDELIMQLRRLPGDAGAVAMVSIDHQFFVIVRVRGRNVQVFLSDGVEANDWPIARDVADFLGEDIPDVDDDADPMGDFDLLSDVGLSEFDLEAIADLDEDSDEQLSIVARRINFGPIFQRAVENSGR
>NZ_LT906441.1|WP_036957086.1|329919_330390_-|nucleoside-deaminase
MSLWQEAMSHAVDQARAAADWGDVPIGAVLLDPNGRVLAAGANERELTGDPTAHAEVVTIRRGVEALQARDEDDGWHLDDCTLVVTLEPCTMCAGAIVAARIGTLVFGAFDPKAGAVSSLWDVVRDPRLNHRVRVVSQVCDQECAGLLTEFFMTRR
>NZ_LT906441.1|WP_021105194.1|327258_328593_-|oligosaccharide-flippase-family-protein
MTAPSSEKKSGFKAFLGRHEFLSSVLKVISGTGVAQLVAIIAVLIVTHKVDPVDWGIYSAVYATAGFVIPVAALRYDMAIVLPRDDGEARAIFNLATRINVIVSLLATIIMIPLGGYLSGLLDAPAGTRWWMLAVGGFIFTYCQYNIANFWANRRKQFGVIGTNAVWKQTVAGAGRIGSAFAGLGAGGQIVAVILGQMAGLNNFRRRLGKDVVEVRAADIPTRTLMKRYRKMPLLTAPNAIVDAIRLQGIPWSMGIHYSGAAMGLFTMAWQLMQVPAAVINQAMSQVFYQKLSVTDAGHMFSMVRRSIVRSFLVGIIPFGLLYLLVPPILPLLMGASYRPVADLAVALVPWLFLNFVTSPVSNLFIVTRNNGIALIFAIIYAVIPLTYLSRAHGAIIHTVSMMSWMQTGLLVCYIVLALIVAWNFDRKHANDLQPTAESDDSAK
>NZ_LT906441.1|WP_065860997.1|325040_326594_-|potassium/proton-antiporter
MTVFDLALLLTAVIILFAALAVRIGSRLGLPALLLFLLIGMVLGPAGFGVQFNDPELARGLGLAALALILAEGGLSARWHEIRPALAPAGLLATVGSATSIEVMAVFCHCAFSIDWTVAALLGAVTAPTDSAAVFSILRGVSLPSRLKSILEAESGLNDAPTVLVVVALSAMATGDPLPGGVWGLIVSIAVQLAAGVLVGLLVGWLGSHVTRRVKLPSSSLYGVVAMCWASLAYGLAVLAHVSGFAAVYVAAVVIGNSDLPYQHATELFAEGVGWICQIGLFVMLGLLANPDRLTWVPVLQGVVIGLFLTLVARPLAVFVSTVWFRTPWRHQVFLSWAGLRGAVPIILATIPISDDLVGADRIFDAVLVLVVVCVLAQGPTLPTVGALLGLVDASAVKDVDIEVAPLGDVDAELIQVNVPIGSQLSGTTVGELQLPANTIVSLIIRGEQSFAPGADTCLLANDELLIVTPSAQRHAVAEQLTEIGHDGRSARCLRGSGDQGSQTPRDSGHRGQTDQS
>NZ_LT906441.1|WP_157738702.1|324092_324608_+|LytR-C-terminal-domain-containing-protein
MATPITLLILVAILLVAAKLGIRALTAPPPSAKIPPCVSTDVGGTLKSSDIVVSVFNGSHERGLAGKVSKQLTQKGFQEGEVSNTDERIKQTIIVGHSKDDPQVKLIAAFFPKAMFRADPDRPDHAVRVLVGSEFGGFNAKAATSIPVSGPVCLPPAEGLASPSATPSEEG
>NZ_LT906441.1|WP_021105191.1|323756_324050_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MIFKRVGDRRPYPDHGYTQKQWSEIPPVQVRLDQLTTTKSTLDLDNLLEEDSTFYGDLFAHVVSWRGELYLEDGLHRALRAALQQRQTLHARILDLD
>NZ_LT906441.1|WP_065860983.1|321981_322968_-|hypothetical-protein
MDISAMDPGNLRELFDADVVDSAGVKVGTVEQIFAGDSTGAATFITVINESGEQHFVPAHEGRYVEETVSMPYDRQLMMAAPVAHTDEDLSPSSEEEIRRHYGLLQGDSDEPHNGVDTSSEAHQTGHDEDGPDAEQPFNSVDEEPPAQSSKDEADEVPPRVFTPYDFVVPGTVPSATSGAADDDEPEDTDEDETESHDEQLASTEQQDGQADSSVEAAQRAVLGLPAEAQLRKYVVTEMVTVQVPVQLPVRREVVCWQDADGKVHELDTVDAPEPDADQGERSVGEQTEDDGDAPDDSRGEVDYEDRAYVRDASNWDITINSDGPAKG
>NZ_LT906441.1|WP_021105189.1|320148_321483_-|tryptophan-synthase-subunit-beta
MTTIDTANACDTAPVTDAVPRTIAEACDVVTTPHLTLPADGVFGGYGGSVLPAALERPMAEVAQAYDEARNDPEFYAEYLRLLREFVGRPSSLTFADRLSQELGGARIVLKREDLNHTGSHKINHCLGEALLAKRMGKSTVIAETGAGQHGVALATAAALLGLKCEIHMGAIDVAKQHPNVVRMKMLGAKVVAVETGGRSLKEAVDSAFEVYARNCDDHLYAIGSVVGPHPFPSMVRDFQTVIGREARAQLLAARGALPAAVVACVGGGSNAMGAFTAFLDDADVRLIGVEPAGRGQQRGEHAMSIAKGADAVLHGMRTKVLVDDQGEPDAVHSIASGLDYPGVGPQHAYFDQVGRVEYVGITDDQVLDAFLHLSRTEGIIPALESAHAVAHAMAMAPTMPRDSYLVVNLSGRGDKDVDHVAEQLGMGGEPDTVADAPAASLNV
>NZ_LT906441.1|WP_065860982.1|319039_320107_-|hypothetical-protein
MKQLKARRSVGVATALSLSLLGSLSCAAVASADEGPEPATTTSVSASPEAESTTPLLPLGESPSAERTTELFPYSESSTTIKPPSSNTSSDLPAGNDDVTGAGHGTDDSEDGEVADGDVNVSLSVGGGDFQAGRDVKVDRSNLTVQVNYDLLSPNKGDRSVKRVFSGSVAWQIVPAGTNPDKGHDPRAVAWGDARINETGKGSVDVSLARLTPGKHYDLVIDFTGDCAVDRGDGTLHTSVHYDKRVTVRGLHRTKDFRLRHLHLDGDSHVGRGDGLHLKGLPLFDGHPLKHLHFSGKSHLELDGNAHREKDFKLPELNLKTSFGGGAEVSHDDQAGAGEGAAPVAKGKGLPATGF
>NZ_LT906441.1|WP_065860981.1|317469_318714_-|alpha/beta-fold-hydrolase
MSDTSIPGLLTDDVRLTVPLDHFDDSDPRTIEIYARLVSTRCNQDKPWLVFLQGGPGCESPRPALVDPGFPGWLRRALDDYRLVLLDQRGTGLSSPVSEPVGSAADQAEYLTHLRADEIVEDCEDLRRHLGVEQWAALGQSFGGFTMLRYLSVHSSSLLAGYFTGGLSAVGCSADEVYTTCYHTMQAKSEQYYRRFPGDRGRMRAVLDLAASGELRAPNGDPVSPSRVRSLGHLLGGSGGAEKLHYLLEYEPTSRCFRYDLADLLPFGGRNVLYTVIHESSYADGVTTNWAAARCLPQAFHDDPTLLTGEHVMPEWFDEDSSLQPWKDVAQIIAEHPWPTLYDADALAASQVPCAAAIYHDDAYVPREYSLQTAALLPGMHPWVTSQYEHNGSNASGGGVLDRLIKLVHGDIVR
>NZ_LT906441.1|WP_081659007.1|332439_333066_+|uracil-phosphoribosyltransferase
MDHPLVSHKLTLLRSQDTTSPVFRQLVEELVTLLAYEATREVDVVPCTVTTPVTQARGVELASPKPLVVPILRAGLGMLEGMLRLIPSAEVGFVGMARDEETLQPMTYAERLPSDLSGRQCFVLDPMLATGGSLGGAVQFLAKRGAKHVVCLCILAAPEGIERFRGLVKDLGMQCTLVVAGVDEKLNEKGYIVPGLGDAGDRLYGLAE
>NZ_LT906441.1|WP_065860985.1|334589_336959_-|glycogen/starch/alpha-glucan-phosphorylase
MSQDFAAEVAAHVRAGSGRPVNASTPMEVWQGLSRSVIDRVADDWNRTTATYKAGRMEHYLSAEFLMGRALLNNLSNLGIEDDARAALAAHGLNLTDVLEQEPDAALGNGGLGRLAACFLDSCATLDLPVDGYGILYRYGLFRQVFSDGFQIEEPDSWMEDEYPFIIRREEARRVVHYADLDVFAVPYDMPVTGYGTSNVNTLRLWKAEPIHEFDYDAFNSQRFTDAIVDRERTMDISRVLYPNDTTYEGKVLRVRQQYFFCSATLQELIDNYVEHHGANLNGFADFNAIQLNDTHPVLAIPELMRLLMDEHGLGWDAAWAVVTRTFAYTNHTVLAEALETWEMSIFERLFPRIAEIVREIDRRFREDMASRGVDPETANYMAPVADERVRMAWIACYASYSINGVAALHTEIIKADTLKPWHELWPGKFNNKTNGVTPRRWLKQCNPRLADLLDDVTGSDEWVRDLTVLAQHTDSVPENVYERLTEIKRANKVDFATWVARREGVEVDPEAIFDVQIKRLHEYKRQLLNALYILDLYFRLKEDPDLETPKRVFIFGAKAAPGYVRAKAVIKLINAIADLVNNDEEVNSRVKVVFVHNYNVSPAEHIIPAADVSEQISMAGKEASGTSNMKFMMNGALTLGTLDGANVEILDAVGEDNAYIFGATKDELPSLRENYDPTWYYQNVPGLARVLDALVDGTLDDNGSGWFADLRRSLLDGGNQADTYYVLGDFESYRTTKDGMAADYEDEKSWARKAWVNITRSGRFSSDRTIQDYADNVWRVSATPIRVE
>NZ_LT906441.1|WP_095141051.1|337167_339183_+|KUP/HAK/KT-family-potassium-transporter
MAASKADPPTPQQSPGSVQHTPTQQGPAPRTHSPQGKGRLFGLALAALGIVFGDIGTSPLYSVQTVFALEHNTIPPDSRSILGVISMITWTLVLIVCIKYLTFVMRADNEGEGGILALMALIRHTLKDRKKIRRMALLLGLIGASLFYGDSMITPAISVMSAIEGLSVINPAADQIVLPAAILILTVLFAIQRKGTARIGRAFGPIMTIWFLTLACLGVPWIVRNPQILKALSPHYAALFWIDRPWMAFISMGAVVLTITGTEALYADMGHVGAKPIRLSWFCLVGPALLLDYYGQGAMLLMHPDWIDNPFFRLAPSWGRVPLVLLATMATIIAAQAVISGTFSLSYQASRMGLLPRLSVKHTSKEEGGQIYIPEINWILYCGVLVLIAIFKSSARLATAYGLAVTGTEMLTTTLFLTWARCAWRWPKWAVALLGVIIYSVEATIFSANLLKIASGGWIPLVISAITIVVMTTWRRGTRMVYGQRALAEGPLEDFLDWVRKENPPRVPGLAVYPHPDRVTTPLAMRNNMRFNHVLHEHNVILSIVNENVPHIRHKQRVAVTDLGDPADGISYVECHVGFADSQDVPKALALAYDRLPDLNGLDITKAVYFLSVADVKRGDPTDPDSVAATNKMVGWRKMLYVTMNRNQADRTKVFRTPRVRSVVLGEVVEI
>NZ_LT906441.1|WP_065860986.1|339230_339986_-|glycerophosphodiester-phosphodiesterase
MTAIWAHRGASGRLPENTMSAFLAALVSGADAIELDVHLTRDGHVVVCHDETIDRTSNGHGRIVDQSLQQLRAYSFASGKPGWGYEPIPELDDVLALSCRCDAIVNIELKNSLIRYPGLEQKVVDAVRRHHMADRVVISSFNHRSLVLLADLAPDIRRGMLYEDDLVDPWSYAATLKVQAVHPRHQLLSGRDDVPTFHEHGLGVRAWTVNTEQAREAAHLGVDAVITNYPAEVAVAVASGGRQNPIAFSGG
>NZ_LT906441.1|WP_095141052.1|340883_342683_+|LCP-family-protein
MPGSHGRFDGSHDARTPRDGRAQHHGSSSSGSRSRNRAGATGTSAGRCRRAAATSRSATPSSGHAPTHADASWQRAHKRDVQFRRSILWTLLAAIIPGLGLSRSSRPRRRAFGMTLTAVALVAAFAAGITLWVKPTNAAAIAVRPGMLLAIVWALPIMAVVLTVVLILTHLDLRPRGITRAQRWISSIVVAALTLMISGPMAVASRYAYDDYALLNRIFGDAPSATRPDIDTHRSVKDIWASKPRVNVLLVGADDTKQRHYRDRGEMNTDTIMVASIDTRTGNGTIIQIPRNTAAMPFPENSKLHTIYPEGFTTGHGDDSKSFANAIWSTVEAEHPDAIENTKYPGADALKMAVGEGLGLSIDYFLMIDIDGLQKLIDSLGGVTVNINQRLPIAGNSEGKPPTGYLEVGPEQHLNGYNAMWYARSRSESSDYDRMGRQSCLMKAVLDQTNPETVLTRFEAIADASGDMVVSDIPQGMLPAFVDLAMRMQDANLNRLLFVNGKNGFQPWDPNYPMMREQVAETIARASDSSNANKPVTGKSARPSATKSKKAAPKQGSHAAGGKAARGTSAPTSASPTPKDTESSLTDVCGFHPIDEQNR
>NZ_LT906441.1|WP_095141053.1|342786_344049_-|galactokinase
MESDDAETPTQQTAHAQQRSTGSPNTETAWSRGQGARKAADLFTEQYATAPHGVWASPGRVNLIGEHTDYNGGLCLPIALPHATYAAMSRRDDDVVRICSRVHGEVVTWQGTLGEILRRKVKGWTAYTAGVVWGFHDAGYQCTGFDVALESCVPLGAGLSSSAAVECAVALGLDELDGFGLAADDRGRAELVDIAVATENTVVGAPTGGLDQAASLRTQEGRALLLDCMDASTRQVPFDLAASGLQLLVIDTRAKHSLNDGQYASRRASCEQAAALLGVDTLRQIDDLGAAIAMMPDATTAARVRHVVTEIQRVQDFVALMDAGRVLDVGPLMNESHESLRDDYEVSCAELDVAVAAARSAGALGARMTGGGFGGSAIALVREVDGAAVQDAVRAQYREHGFTAPKIHGVTPGRSGARVS
>NZ_LT906441.1|WP_065860999.1|344422_344911_-|hypothetical-protein
MADAVTVQTLPDGTIRHVLRPEPPIGAFVISGVVTLIGVFLLVFSLVTHWSTGWIVFSAILLGLGLLMVAGSIWAAQRMRLLVDLNDEGYRIHGAGQDRSGTWTSVTKAAMTPNRSRLTLYHGQVGRTHIVRPGEGDPAEMDSLAADVARHIDRSHHLDQGR
>NZ_LT906441.1|WP_065860987.1|345115_346117_+|NAD(P)H-quinone-oxidoreductase
MYAITVRPTDKTDAKGRHRPGPENMEWTQVPTPAPASGEVRVAVKAVGMNRADLLQRQGLYPPPPGVSETMGLEVCGTIDALGDDVDGWQVGDEVVALLAGGGYAEQVIVPAGQLLHMPDGVEPAVASTLVEVAATVISNMDHVHLHEGETILVHGGAGGIGQFAIQYAKARGCRVVVTAGTQEKRDFCRELGADVAIDYHEDWVAAVKEATDGAGVDVILDIMGAKYLGANVDSLAMDGRLVIIGMQGGVKGELRIDKVLGKRATVTATSLRFRDLADKARICRLVEEQAWPMYASGQIKPAPVETFALPDAADAHRRLESGEVLGKIALTL
>NZ_LT906441.1|WP_065860988.1|346316_347732_+|argininosuccinate-synthase
MSKVLNELPSGEKIGLAFSGGLDTSVAVAWMRSKGAIPCTYTANIGQYDEDDIESVPGRALDYGAEISRLVDCRAALVEEGLSALACGAFNVRSAGRPYFNTTPIGRAVTGTLLVRAMAKDDVSIWGDGSTYKGNDIERFYRYGLLANPQLRIYKPWLDEGFVKEIGGRDEMSVWLTEHNLPYRDSKEKAYSTDANIWGATHEAKTLESLDVSIESVEPIMGVKFWDPDVTIDAEEVSVTFEQGVPVAINGVEYDDKVALVLKANEIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLYIAYERLINAVHNEETIETYHNEGRRLGRILYDGRWLDPQALMVRESLQHWVASAITGTVTLKLRRGWDYSILKTQGPRFSYHAEKLSMERVEGAAFSPTDRIGQLTMRNLDIADTREKLELYSSQGRLAGQADWVGSLAEGGAKAISSSSHEDDDAQRSLDHAAIDFGVD
>NZ_LT906441.1|WP_065860989.1|347828_349151_+|MFS-transporter
MRSYREVLAIREVWTTILLSALTRLPIFGLTMLITLHVVETLGMSYRLAGAVTTFVTISSMISAPWRGSMTDRRGLRRTMIPSIVVMTAVYAVAPWLGYYPLLVILALGYLWNYPIYTIPRQVLIATVPLRKRRAALSLDAVSIEICYMFGPMVSIIIASSVGTRATMIGCAVLAALGATGLTVLDPPIAETSGAASEGQTPSSSSPDGNPSPDPRSATEPVAPTQSSATETLAVEGTTHDSDSPTIDVPTAHPSTTPALAWVNRFTVAILIGCLAAGYTLGGIELTTVGAMREMGSTQAIGWVLAFSGLGSALGGTIYGALNRSVPMPALLTLMGLTAAATTLATSPLQAGLILLIGGLFVSPTLTASIDQLTNLTPPSRRGSVIGWQGSFLNAGVAISAPTIGAVIDGVGWHQAFILSGAIAAVIGLAVGAVMRTRGS

Crispr_ID: NZ_LT906441_3

• CRISPR_ID: NZ_LT906441_3
• CRISPR_location: 334471-334615
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_LT906441_3

Consensus_repeat	Method
ACCCCACCCGGATGGGGGTGGCAG	CRISPRCasFinder

spacers of NZ_LT906441_3

>3.1|334495|36|NZ_LT906441|CRISPRCasFinder
CGTTGAGCGGCGTTCTCGCTCGAAACACACGTGTTG
>3.2|334555|37|NZ_LT906441|CRISPRCasFinder
CCGTCTTGACGATGAAATCAGAAGAGGCCTGAGGCTC

CRISPR arrays and Neighbor proteins around NZ_LT906441_3

CRISPR arrays

The CRISPR arrays of NZ_LT906441_3

>merge|NZ_LT906441|3|334471-334615|CRISPRCasFinder
ACCTCACCTGTATGGGTGTGGGAGCGTTGAGCGGCGTTCTCGCTCGAAACACACGTGTTGACCCCACCCGGATGGGGGTGGCAGCCGTCTTGACGATGAAATCAGAAGAGGCCTGAGGCTCACTCCACCCGGATGGGGGTGGCAG

>NZ_LT906441|3|3|334471-334615|CRISPRCasFinder
ACCTCACCTGTATGGGTGTGGGAG	CGTTGAGCGGCGTTCTCGCTCGAAACACACGTGTTG
ACCCCACCCGGATGGGGGTGGCAG	CCGTCTTGACGATGAAATCAGAAGAGGCCTGAGGCTC
ACTCCACCCGGATGGGGGTGGCAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_021105189.1|320148_321483_-|tryptophan-synthase-subunit-beta	unknown	unknown	gnl|CDD|183851
NZ_LT906441.1|WP_095141051.1|337167_339183_+|KUP/HAK/KT-family-potassium-transporter	unknown	unknown	gnl|CDD|376906
NZ_LT906441.1|WP_157738702.1|324092_324608_+|LytR-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|379163
NZ_LT906441.1|WP_065860987.1|345115_346117_+|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl|CDD|176180
NZ_LT906441.1|WP_065860988.1|346316_347732_+|argininosuccinate-synthase	unknown	unknown	gnl|CDD|235434
NZ_LT906441.1|WP_065860989.1|347828_349151_+|MFS-transporter	unknown	unknown	gnl|CDD|340883
NZ_LT906441.1|WP_081659007.1|332439_333066_+|uracil-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234653
NZ_LT906441.1|WP_065860991.1|351635_352421_+|HAD-family-phosphatase	unknown	unknown	gnl|CDD|223635
NZ_LT906441.1|WP_065860983.1|321981_322968_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_095141054.1|349358_351482_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|223104
NZ_LT906441.1|WP_065860982.1|319039_320107_-|hypothetical-protein	unknown	unknown	gnl|CDD|250634
NZ_LT906441.1|WP_021105191.1|323756_324050_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin	unknown	unknown	gnl|CDD|227737
NZ_LT906441.1|WP_021105194.1|327258_328593_-|oligosaccharide-flippase-family-protein	unknown	unknown	gnl|CDD|225153
NZ_LT906441.1|WP_095141052.1|340883_342683_+|LCP-family-protein	unknown	unknown	gnl|CDD|224235
NZ_LT906441.1|WP_065860999.1|344422_344911_-|hypothetical-protein	unknown	unknown	gnl|CDD|285278
NZ_LT906441.1|WP_021103968.1|330653_331328_-|tRNA-adenosine-deaminase-associated-protein	unknown	unknown	gnl|CDD|274869
NZ_LT906441.1|WP_065860997.1|325040_326594_-|potassium/proton-antiporter	unknown	unknown	gnl|CDD|235410
NZ_LT906441.1|WP_036957086.1|329919_330390_-|nucleoside-deaminase	unknown	unknown	gnl|CDD|223663
NZ_LT906441.1|WP_065860986.1|339230_339986_-|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl|CDD|176506
NZ_LT906441.1|WP_095141053.1|342786_344049_-|galactokinase	unknown	unknown	gnl|CDD|223231

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_021105189.1|320148_321483_-|tryptophan-synthase-subunit-beta	gnl|CDD|183851	PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.	0
NZ_LT906441.1|WP_095141051.1|337167_339183_+|KUP/HAK/KT-family-potassium-transporter	gnl|CDD|376906	pfam02705, K_trans, K+ potassium transporter. This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP), yeast (HAK), and plant (AtKT) sequences as members.	0
NZ_LT906441.1|WP_157738702.1|324092_324608_+|LytR-C-terminal-domain-containing-protein	gnl|CDD|379163	pfam13399, LytR_C, LytR cell envelope-related transcriptional attenuator. This family appears at the C-terminus of members of the LytR_cpsA_psr, pfam03816, family.	5.28593e-16
NZ_LT906441.1|WP_065860987.1|345115_346117_+|NAD(P)H-quinone-oxidoreductase	gnl|CDD|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	5.07358e-161
NZ_LT906441.1|WP_065860988.1|346316_347732_+|argininosuccinate-synthase	gnl|CDD|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_LT906441.1|WP_065860989.1|347828_349151_+|MFS-transporter	gnl|CDD|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.26225e-13
NZ_LT906441.1|WP_081659007.1|332439_333066_+|uracil-phosphoribosyltransferase	gnl|CDD|234653	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.	7.51746e-114
NZ_LT906441.1|WP_065860991.1|351635_352421_+|HAD-family-phosphatase	gnl|CDD|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.21257e-52
NZ_LT906441.1|WP_095141054.1|349358_351482_-|cation:proton-antiporter	gnl|CDD|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	9.07767e-53
NZ_LT906441.1|WP_065860982.1|319039_320107_-|hypothetical-protein	gnl|CDD|250634	pfam01456, Mucin, Mucin-like glycoprotein. This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells. This family contains an N-terminal signal peptide.	0.0043663
NZ_LT906441.1|WP_021105191.1|323756_324050_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin	gnl|CDD|227737	COG5450, COG5450, Transcription regulator of the Arc/MetJ class [Transcription].	6.44421e-09
NZ_LT906441.1|WP_021105194.1|327258_328593_-|oligosaccharide-flippase-family-protein	gnl|CDD|225153	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only].	3.53059e-13
NZ_LT906441.1|WP_095141052.1|340883_342683_+|LCP-family-protein	gnl|CDD|224235	COG1316, LytR, Transcriptional regulator [Transcription].	7.92875e-26
NZ_LT906441.1|WP_065860999.1|344422_344911_-|hypothetical-protein	gnl|CDD|285278	pfam08006, DUF1700, Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and putative membrane proteins.	0.00107885
NZ_LT906441.1|WP_021103968.1|330653_331328_-|tRNA-adenosine-deaminase-associated-protein	gnl|CDD|274869	TIGR03941, conserved_hypothetical_protein, putative tRNA adenosine deaminase-associated protein. This model describes a protein family about 200 amino acids in length with only five invariant residues, including an Arg, a Ser-Asp pair, and two Gly residues. Members always are found exclusively in Actinobacteria, and always adjacent to homologs of TadA, a tRNA-specific adenosine deaminase from Escherichia coli. Homology, phyletic pattern, and gene neighborhood together suggest a housekeeping function in tRNA metabolism. [Unknown function, General].	1.09939e-29
NZ_LT906441.1|WP_065860997.1|325040_326594_-|potassium/proton-antiporter	gnl|CDD|235410	PRK05326, PRK05326, potassium/proton antiporter.	1.08103e-176
NZ_LT906441.1|WP_036957086.1|329919_330390_-|nucleoside-deaminase	gnl|CDD|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.83807e-57
NZ_LT906441.1|WP_065860986.1|339230_339986_-|glycerophosphodiester-phosphodiesterase	gnl|CDD|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	2.03212e-98
NZ_LT906441.1|WP_095141053.1|342786_344049_-|galactokinase	gnl|CDD|223231	COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism].	2.78073e-113

Protein sequences

>NZ_LT906441.1|WP_081659007.1|332439_333066_+|uracil-phosphoribosyltransferase
MDHPLVSHKLTLLRSQDTTSPVFRQLVEELVTLLAYEATREVDVVPCTVTTPVTQARGVELASPKPLVVPILRAGLGMLEGMLRLIPSAEVGFVGMARDEETLQPMTYAERLPSDLSGRQCFVLDPMLATGGSLGGAVQFLAKRGAKHVVCLCILAAPEGIERFRGLVKDLGMQCTLVVAGVDEKLNEKGYIVPGLGDAGDRLYGLAE
>NZ_LT906441.1|WP_021103968.1|330653_331328_-|tRNA-adenosine-deaminase-associated-protein
MGTDRDDEFTDDEDFAASDDVSVDDASDDDVDDLTDSEELDLADDDDFDDGDDDYYSDDDYDDLEDASDDEIDFVVALYADDGERTSAPLDLQLANDLDELIMQLRRLPGDAGAVAMVSIDHQFFVIVRVRGRNVQVFLSDGVEANDWPIARDVADFLGEDIPDVDDDADPMGDFDLLSDVGLSEFDLEAIADLDEDSDEQLSIVARRINFGPIFQRAVENSGR
>NZ_LT906441.1|WP_036957086.1|329919_330390_-|nucleoside-deaminase
MSLWQEAMSHAVDQARAAADWGDVPIGAVLLDPNGRVLAAGANERELTGDPTAHAEVVTIRRGVEALQARDEDDGWHLDDCTLVVTLEPCTMCAGAIVAARIGTLVFGAFDPKAGAVSSLWDVVRDPRLNHRVRVVSQVCDQECAGLLTEFFMTRR
>NZ_LT906441.1|WP_021105194.1|327258_328593_-|oligosaccharide-flippase-family-protein
MTAPSSEKKSGFKAFLGRHEFLSSVLKVISGTGVAQLVAIIAVLIVTHKVDPVDWGIYSAVYATAGFVIPVAALRYDMAIVLPRDDGEARAIFNLATRINVIVSLLATIIMIPLGGYLSGLLDAPAGTRWWMLAVGGFIFTYCQYNIANFWANRRKQFGVIGTNAVWKQTVAGAGRIGSAFAGLGAGGQIVAVILGQMAGLNNFRRRLGKDVVEVRAADIPTRTLMKRYRKMPLLTAPNAIVDAIRLQGIPWSMGIHYSGAAMGLFTMAWQLMQVPAAVINQAMSQVFYQKLSVTDAGHMFSMVRRSIVRSFLVGIIPFGLLYLLVPPILPLLMGASYRPVADLAVALVPWLFLNFVTSPVSNLFIVTRNNGIALIFAIIYAVIPLTYLSRAHGAIIHTVSMMSWMQTGLLVCYIVLALIVAWNFDRKHANDLQPTAESDDSAK
>NZ_LT906441.1|WP_065860997.1|325040_326594_-|potassium/proton-antiporter
MTVFDLALLLTAVIILFAALAVRIGSRLGLPALLLFLLIGMVLGPAGFGVQFNDPELARGLGLAALALILAEGGLSARWHEIRPALAPAGLLATVGSATSIEVMAVFCHCAFSIDWTVAALLGAVTAPTDSAAVFSILRGVSLPSRLKSILEAESGLNDAPTVLVVVALSAMATGDPLPGGVWGLIVSIAVQLAAGVLVGLLVGWLGSHVTRRVKLPSSSLYGVVAMCWASLAYGLAVLAHVSGFAAVYVAAVVIGNSDLPYQHATELFAEGVGWICQIGLFVMLGLLANPDRLTWVPVLQGVVIGLFLTLVARPLAVFVSTVWFRTPWRHQVFLSWAGLRGAVPIILATIPISDDLVGADRIFDAVLVLVVVCVLAQGPTLPTVGALLGLVDASAVKDVDIEVAPLGDVDAELIQVNVPIGSQLSGTTVGELQLPANTIVSLIIRGEQSFAPGADTCLLANDELLIVTPSAQRHAVAEQLTEIGHDGRSARCLRGSGDQGSQTPRDSGHRGQTDQS
>NZ_LT906441.1|WP_157738702.1|324092_324608_+|LytR-C-terminal-domain-containing-protein
MATPITLLILVAILLVAAKLGIRALTAPPPSAKIPPCVSTDVGGTLKSSDIVVSVFNGSHERGLAGKVSKQLTQKGFQEGEVSNTDERIKQTIIVGHSKDDPQVKLIAAFFPKAMFRADPDRPDHAVRVLVGSEFGGFNAKAATSIPVSGPVCLPPAEGLASPSATPSEEG
>NZ_LT906441.1|WP_021105191.1|323756_324050_+|type-II-toxin-antitoxin-system-VapB-family-antitoxin
MIFKRVGDRRPYPDHGYTQKQWSEIPPVQVRLDQLTTTKSTLDLDNLLEEDSTFYGDLFAHVVSWRGELYLEDGLHRALRAALQQRQTLHARILDLD
>NZ_LT906441.1|WP_065860983.1|321981_322968_-|hypothetical-protein
MDISAMDPGNLRELFDADVVDSAGVKVGTVEQIFAGDSTGAATFITVINESGEQHFVPAHEGRYVEETVSMPYDRQLMMAAPVAHTDEDLSPSSEEEIRRHYGLLQGDSDEPHNGVDTSSEAHQTGHDEDGPDAEQPFNSVDEEPPAQSSKDEADEVPPRVFTPYDFVVPGTVPSATSGAADDDEPEDTDEDETESHDEQLASTEQQDGQADSSVEAAQRAVLGLPAEAQLRKYVVTEMVTVQVPVQLPVRREVVCWQDADGKVHELDTVDAPEPDADQGERSVGEQTEDDGDAPDDSRGEVDYEDRAYVRDASNWDITINSDGPAKG
>NZ_LT906441.1|WP_021105189.1|320148_321483_-|tryptophan-synthase-subunit-beta
MTTIDTANACDTAPVTDAVPRTIAEACDVVTTPHLTLPADGVFGGYGGSVLPAALERPMAEVAQAYDEARNDPEFYAEYLRLLREFVGRPSSLTFADRLSQELGGARIVLKREDLNHTGSHKINHCLGEALLAKRMGKSTVIAETGAGQHGVALATAAALLGLKCEIHMGAIDVAKQHPNVVRMKMLGAKVVAVETGGRSLKEAVDSAFEVYARNCDDHLYAIGSVVGPHPFPSMVRDFQTVIGREARAQLLAARGALPAAVVACVGGGSNAMGAFTAFLDDADVRLIGVEPAGRGQQRGEHAMSIAKGADAVLHGMRTKVLVDDQGEPDAVHSIASGLDYPGVGPQHAYFDQVGRVEYVGITDDQVLDAFLHLSRTEGIIPALESAHAVAHAMAMAPTMPRDSYLVVNLSGRGDKDVDHVAEQLGMGGEPDTVADAPAASLNV
>NZ_LT906441.1|WP_065860982.1|319039_320107_-|hypothetical-protein
MKQLKARRSVGVATALSLSLLGSLSCAAVASADEGPEPATTTSVSASPEAESTTPLLPLGESPSAERTTELFPYSESSTTIKPPSSNTSSDLPAGNDDVTGAGHGTDDSEDGEVADGDVNVSLSVGGGDFQAGRDVKVDRSNLTVQVNYDLLSPNKGDRSVKRVFSGSVAWQIVPAGTNPDKGHDPRAVAWGDARINETGKGSVDVSLARLTPGKHYDLVIDFTGDCAVDRGDGTLHTSVHYDKRVTVRGLHRTKDFRLRHLHLDGDSHVGRGDGLHLKGLPLFDGHPLKHLHFSGKSHLELDGNAHREKDFKLPELNLKTSFGGGAEVSHDDQAGAGEGAAPVAKGKGLPATGF
>NZ_LT906441.1|WP_095141051.1|337167_339183_+|KUP/HAK/KT-family-potassium-transporter
MAASKADPPTPQQSPGSVQHTPTQQGPAPRTHSPQGKGRLFGLALAALGIVFGDIGTSPLYSVQTVFALEHNTIPPDSRSILGVISMITWTLVLIVCIKYLTFVMRADNEGEGGILALMALIRHTLKDRKKIRRMALLLGLIGASLFYGDSMITPAISVMSAIEGLSVINPAADQIVLPAAILILTVLFAIQRKGTARIGRAFGPIMTIWFLTLACLGVPWIVRNPQILKALSPHYAALFWIDRPWMAFISMGAVVLTITGTEALYADMGHVGAKPIRLSWFCLVGPALLLDYYGQGAMLLMHPDWIDNPFFRLAPSWGRVPLVLLATMATIIAAQAVISGTFSLSYQASRMGLLPRLSVKHTSKEEGGQIYIPEINWILYCGVLVLIAIFKSSARLATAYGLAVTGTEMLTTTLFLTWARCAWRWPKWAVALLGVIIYSVEATIFSANLLKIASGGWIPLVISAITIVVMTTWRRGTRMVYGQRALAEGPLEDFLDWVRKENPPRVPGLAVYPHPDRVTTPLAMRNNMRFNHVLHEHNVILSIVNENVPHIRHKQRVAVTDLGDPADGISYVECHVGFADSQDVPKALALAYDRLPDLNGLDITKAVYFLSVADVKRGDPTDPDSVAATNKMVGWRKMLYVTMNRNQADRTKVFRTPRVRSVVLGEVVEI
>NZ_LT906441.1|WP_065860986.1|339230_339986_-|glycerophosphodiester-phosphodiesterase
MTAIWAHRGASGRLPENTMSAFLAALVSGADAIELDVHLTRDGHVVVCHDETIDRTSNGHGRIVDQSLQQLRAYSFASGKPGWGYEPIPELDDVLALSCRCDAIVNIELKNSLIRYPGLEQKVVDAVRRHHMADRVVISSFNHRSLVLLADLAPDIRRGMLYEDDLVDPWSYAATLKVQAVHPRHQLLSGRDDVPTFHEHGLGVRAWTVNTEQAREAAHLGVDAVITNYPAEVAVAVASGGRQNPIAFSGG
>NZ_LT906441.1|WP_095141052.1|340883_342683_+|LCP-family-protein
MPGSHGRFDGSHDARTPRDGRAQHHGSSSSGSRSRNRAGATGTSAGRCRRAAATSRSATPSSGHAPTHADASWQRAHKRDVQFRRSILWTLLAAIIPGLGLSRSSRPRRRAFGMTLTAVALVAAFAAGITLWVKPTNAAAIAVRPGMLLAIVWALPIMAVVLTVVLILTHLDLRPRGITRAQRWISSIVVAALTLMISGPMAVASRYAYDDYALLNRIFGDAPSATRPDIDTHRSVKDIWASKPRVNVLLVGADDTKQRHYRDRGEMNTDTIMVASIDTRTGNGTIIQIPRNTAAMPFPENSKLHTIYPEGFTTGHGDDSKSFANAIWSTVEAEHPDAIENTKYPGADALKMAVGEGLGLSIDYFLMIDIDGLQKLIDSLGGVTVNINQRLPIAGNSEGKPPTGYLEVGPEQHLNGYNAMWYARSRSESSDYDRMGRQSCLMKAVLDQTNPETVLTRFEAIADASGDMVVSDIPQGMLPAFVDLAMRMQDANLNRLLFVNGKNGFQPWDPNYPMMREQVAETIARASDSSNANKPVTGKSARPSATKSKKAAPKQGSHAAGGKAARGTSAPTSASPTPKDTESSLTDVCGFHPIDEQNR
>NZ_LT906441.1|WP_095141053.1|342786_344049_-|galactokinase
MESDDAETPTQQTAHAQQRSTGSPNTETAWSRGQGARKAADLFTEQYATAPHGVWASPGRVNLIGEHTDYNGGLCLPIALPHATYAAMSRRDDDVVRICSRVHGEVVTWQGTLGEILRRKVKGWTAYTAGVVWGFHDAGYQCTGFDVALESCVPLGAGLSSSAAVECAVALGLDELDGFGLAADDRGRAELVDIAVATENTVVGAPTGGLDQAASLRTQEGRALLLDCMDASTRQVPFDLAASGLQLLVIDTRAKHSLNDGQYASRRASCEQAAALLGVDTLRQIDDLGAAIAMMPDATTAARVRHVVTEIQRVQDFVALMDAGRVLDVGPLMNESHESLRDDYEVSCAELDVAVAAARSAGALGARMTGGGFGGSAIALVREVDGAAVQDAVRAQYREHGFTAPKIHGVTPGRSGARVS
>NZ_LT906441.1|WP_065860999.1|344422_344911_-|hypothetical-protein
MADAVTVQTLPDGTIRHVLRPEPPIGAFVISGVVTLIGVFLLVFSLVTHWSTGWIVFSAILLGLGLLMVAGSIWAAQRMRLLVDLNDEGYRIHGAGQDRSGTWTSVTKAAMTPNRSRLTLYHGQVGRTHIVRPGEGDPAEMDSLAADVARHIDRSHHLDQGR
>NZ_LT906441.1|WP_065860987.1|345115_346117_+|NAD(P)H-quinone-oxidoreductase
MYAITVRPTDKTDAKGRHRPGPENMEWTQVPTPAPASGEVRVAVKAVGMNRADLLQRQGLYPPPPGVSETMGLEVCGTIDALGDDVDGWQVGDEVVALLAGGGYAEQVIVPAGQLLHMPDGVEPAVASTLVEVAATVISNMDHVHLHEGETILVHGGAGGIGQFAIQYAKARGCRVVVTAGTQEKRDFCRELGADVAIDYHEDWVAAVKEATDGAGVDVILDIMGAKYLGANVDSLAMDGRLVIIGMQGGVKGELRIDKVLGKRATVTATSLRFRDLADKARICRLVEEQAWPMYASGQIKPAPVETFALPDAADAHRRLESGEVLGKIALTL
>NZ_LT906441.1|WP_065860988.1|346316_347732_+|argininosuccinate-synthase
MSKVLNELPSGEKIGLAFSGGLDTSVAVAWMRSKGAIPCTYTANIGQYDEDDIESVPGRALDYGAEISRLVDCRAALVEEGLSALACGAFNVRSAGRPYFNTTPIGRAVTGTLLVRAMAKDDVSIWGDGSTYKGNDIERFYRYGLLANPQLRIYKPWLDEGFVKEIGGRDEMSVWLTEHNLPYRDSKEKAYSTDANIWGATHEAKTLESLDVSIESVEPIMGVKFWDPDVTIDAEEVSVTFEQGVPVAINGVEYDDKVALVLKANEIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLYIAYERLINAVHNEETIETYHNEGRRLGRILYDGRWLDPQALMVRESLQHWVASAITGTVTLKLRRGWDYSILKTQGPRFSYHAEKLSMERVEGAAFSPTDRIGQLTMRNLDIADTREKLELYSSQGRLAGQADWVGSLAEGGAKAISSSSHEDDDAQRSLDHAAIDFGVD
>NZ_LT906441.1|WP_065860989.1|347828_349151_+|MFS-transporter
MRSYREVLAIREVWTTILLSALTRLPIFGLTMLITLHVVETLGMSYRLAGAVTTFVTISSMISAPWRGSMTDRRGLRRTMIPSIVVMTAVYAVAPWLGYYPLLVILALGYLWNYPIYTIPRQVLIATVPLRKRRAALSLDAVSIEICYMFGPMVSIIIASSVGTRATMIGCAVLAALGATGLTVLDPPIAETSGAASEGQTPSSSSPDGNPSPDPRSATEPVAPTQSSATETLAVEGTTHDSDSPTIDVPTAHPSTTPALAWVNRFTVAILIGCLAAGYTLGGIELTTVGAMREMGSTQAIGWVLAFSGLGSALGGTIYGALNRSVPMPALLTLMGLTAAATTLATSPLQAGLILLIGGLFVSPTLTASIDQLTNLTPPSRRGSVIGWQGSFLNAGVAISAPTIGAVIDGVGWHQAFILSGAIAAVIGLAVGAVMRTRGS
>NZ_LT906441.1|WP_095141054.1|349358_351482_-|cation:proton-antiporter
MALVLVLAVAAQWLGWRLKLPALLFLLIIGFALGQWVTPDEMFGQSLLFGGVNLAVAIILFEGSLSLKLREVRDLGKPILRLCSVTVVIAWLLMALAAHLLGMDIRVALLLGALLVVTGPTVINPILRQVRPTRRVSALLRWEGIVVDPIGAILALLVYQAITSIGGNHIGHGLAVLGWTMVVSVLVAFPIGMILTFMLRRLLIPDFLQGVIFVAVACGTVVGANLIQEESGLMAVTLLGIFLANQDLELDVVVEFKEHLQILLVGALFIMLAGRVNPDEIVRVLPVGLAFVAISVLLIRPLSVFIGLHGTETTRQERVLMAFMAPRGIVAASVTSVFALGFSDTADSIAHQAEQLMATDPQRAADLSSFAQNLAGLSDQVDQLVPIVFLMIVCTVAIYGLGIGRLAERLGLASAKPRGVMFAGSPPWAVDAAKLLRSLDVPTLIVTRRSYDLYTARKAGLRTVAADFLSEYAVEEMDLSGINYMVACTPDDNTNSIAAVQYRRVLSRANVFQVRRADEGHPKDRTTGTVSTLKARTAFNPGLTHAEMERHWREGQRVRALPITEQFGWDQFTHYVSGAVILFIVRPGSTVVATEDMGNPKMGDIVVYLGRTPRIDELPRADQDAEDGKARRRAKVHTLRESMSTSSAEEQVRERANARADAEGRPQSGKDGQHVRDVSSQPGSGDVIPGTVVPGDPDQPDARSSDH
>NZ_LT906441.1|WP_065860991.1|351635_352421_+|HAD-family-phosphatase
MTFSPQLVALDIDGTIVDREGRLPDSVRAAVHRVCQAGVPVVLATGRGVTGAIGVHEELGLPAGLLVVSNGSVLAHSDPLRVVSRHTFDPSHVIDEVLRIHPQARIAVEEVGVGFRVSKHFPDGELAGEIHVEPVEELKATPATRIIVRDPDASPDVFVELANQLGMTGVTYFVGWSAWLDIAPRGVTKASGLQEACDMLGIPASSVLAIGDGNNDIEMLRWAGRGVAVGDALDQVRAAADAVTADFDDDGTAAELNRWFG

Crispr_ID: NZ_LT906441_4

• CRISPR_ID: NZ_LT906441_4
• CRISPR_location: 365933-366021
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT906441_4

Consensus_repeat	Method
CCGAAAGTCATCAGCGCAGGGGCGGCCC	CRISPRCasFinder

spacers of NZ_LT906441_4

>4.1|365961|33|NZ_LT906441|CRISPRCasFinder
GTAAACGGTTCTTTGATATGGACTCAACCATAA

CRISPR arrays and Neighbor proteins around NZ_LT906441_4

CRISPR arrays

The CRISPR arrays of NZ_LT906441_4

>merge|NZ_LT906441|4|365933-366021|CRISPRCasFinder
CCGAAAGTCATCAGCGCAGGGGCGGCCCGTAAACGGTTCTTTGATATGGACTCAACCATAACCGAAAGTCATCAGCGCAGGGGCGGCCC

>NZ_LT906441|4|4|365933-366021|CRISPRCasFinder
CCGAAAGTCATCAGCGCAGGGGCGGCCC	GTAAACGGTTCTTTGATATGGACTCAACCATAA
CCGAAAGTCATCAGCGCAGGGGCGGCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_065860992.1|352573_353905_-|DUF4921-family-protein	unknown	unknown	gnl|CDD|379815
NZ_LT906441.1|WP_065861041.1|364762_365896_+|alanine-racemase	unknown	unknown	gnl|CDD|143481
NZ_LT906441.1|WP_065860991.1|351635_352421_+|HAD-family-phosphatase	unknown	unknown	gnl|CDD|223635
NZ_LT906441.1|WP_065860867.1|377814_379137_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|168128
NZ_LT906441.1|WP_095140915.1|362912_363398_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_036957115.1|370053_371112_-|pyruvate-dehydrogenase	unknown	unknown	gnl|CDD|213783
NZ_LT906441.1|WP_169712408.1|357297_362934_+|sugar-binding-protein	unknown	unknown	gnl|CDD|225750
NZ_LT906441.1|WP_095141054.1|349358_351482_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|223104
NZ_LT906441.1|WP_095141057.1|380674_381133_+|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl|CDD|319971
NZ_LT906441.1|WP_065860994.1|356327_356993_+|EcsC-family-protein	unknown	unknown	gnl|CDD|378945
NZ_LT906441.1|WP_095140918.1|379257_380487_+|homoserine-O-acetyltransferase	unknown	unknown	gnl|CDD|234678
NZ_LT906441.1|WP_095141056.1|374679_377040_+|5'-nucleotidase-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|223808
NZ_LT906441.1|WP_095140917.1|364147_364633_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_065861044.1|371633_373196_+|FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|237009
NZ_LT906441.1|WP_065861045.1|373188_374475_+|radical-SAM/SPASM-domain-containing-protein	unknown	unknown	gnl|CDD|274945
NZ_LT906441.1|WP_157738704.1|363557_363995_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_065861043.1|369088_370054_-|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl|CDD|223101
NZ_LT906441.1|WP_065861042.1|366042_367344_-|hypothetical-protein	unknown	unknown	gnl|CDD|367601
NZ_LT906441.1|WP_065860993.1|353934_355209_-|serine--tRNA-ligase	unknown	unknown	gnl|CDD|235461
NZ_LT906441.1|WP_021103536.1|367460_369056_-|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl|CDD|237001

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_065860992.1|352573_353905_-|DUF4921-family-protein	gnl|CDD|379815	pfam16268, DUF4921, Domain of unknown function (DUF4921). This family consists of uncharacterized proteins around 450 residues in length and is mainly found in various Corynebacterium species. Several proteins are predicted as galactose-1-phosphate uridylytransferases. The function of this family is unknown.	0
NZ_LT906441.1|WP_065861041.1|364762_365896_+|alanine-racemase	gnl|CDD|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.47678e-155
NZ_LT906441.1|WP_036957115.1|370053_371112_-|pyruvate-dehydrogenase	gnl|CDD|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	1.12378e-146
NZ_LT906441.1|WP_065860867.1|377814_379137_+|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl|CDD|168128	PRK05613, PRK05613, O-acetylhomoserine/O-acetylserine sulfhydrylase.	0
NZ_LT906441.1|WP_065861045.1|373188_374475_+|radical-SAM/SPASM-domain-containing-protein	gnl|CDD|274945	TIGR04053, sam_11, radical SAM protein, BA_1875 family. Members of this subfamily of the radical SAM domain superfamily show closer sequence relationships to peptide-modifying proteins of bacteriocin and PQQ biosynthesis than to other characterized radical SAM proteins. Within this subfamily, targets are likely to be diverse. [Unknown function, Enzymes of unknown specificity].	0
NZ_LT906441.1|WP_095141057.1|380674_381133_+|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl|CDD|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.29691e-54
NZ_LT906441.1|WP_065860991.1|351635_352421_+|HAD-family-phosphatase	gnl|CDD|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	1.21257e-52
NZ_LT906441.1|WP_095141054.1|349358_351482_-|cation:proton-antiporter	gnl|CDD|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	9.07767e-53
NZ_LT906441.1|WP_169712408.1|357297_362934_+|sugar-binding-protein	gnl|CDD|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	1.3958e-26
NZ_LT906441.1|WP_065860994.1|356327_356993_+|EcsC-family-protein	gnl|CDD|378945	pfam12787, EcsC, EcsC protein family. Proteins in this family are related to EcsC from B. subtilis. This protein is found in an operon with EcsA and EcsB which are components of an ABC transport system. The function of this protein is unknown.	0.00352003
NZ_LT906441.1|WP_095140918.1|379257_380487_+|homoserine-O-acetyltransferase	gnl|CDD|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	1.53835e-166
NZ_LT906441.1|WP_095141056.1|374679_377040_+|5'-nucleotidase-C-terminal-domain-containing-protein	gnl|CDD|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	1.05082e-74
NZ_LT906441.1|WP_021103536.1|367460_369056_-|2-oxo-acid-dehydrogenase-subunit-E2	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	2.81169e-95
NZ_LT906441.1|WP_065861044.1|371633_373196_+|FAD-dependent-oxidoreductase	gnl|CDD|237009	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.	1.53544e-66
NZ_LT906441.1|WP_065861043.1|369088_370054_-|alpha-ketoacid-dehydrogenase-subunit-beta	gnl|CDD|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	8.93171e-144
NZ_LT906441.1|WP_065861042.1|366042_367344_-|hypothetical-protein	gnl|CDD|367601	pfam03663, Glyco_hydro_76, Glycosyl hydrolase family 76. Family of alpha-1,6-mannanases.	4.10247e-20
NZ_LT906441.1|WP_065860993.1|353934_355209_-|serine--tRNA-ligase	gnl|CDD|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0

Protein sequences

>NZ_LT906441.1|WP_065861041.1|364762_365896_+|alanine-racemase
MPYCPSPSQAVVDLAAIVHNLGQVREQAGGRQVMFAVKGDGYGHGASQCALEAQRTNAADWFAVANVAEGQELIAAGITRPILKLSPALPHDLDAAVTSGMRLTVTDDTNIAATGRSARRLARTVKVHIGVDTGMGRIGLPAGELLRLADLVDREPNLELEGVFTHLPLADTPDGEDFTTHQIEDFLAAVERTATSRGPIAQVHVANSGAVLGHDLGATTMVRTGIAAYGYDPNPSLQRANLRPALAWRSWVSFVKQVAPGTNIGYGRTWTAERSTTIATIPVGYADGFPRLLSNRGVVLLGGRRCPVVGRVCMDQIMVDAGPHAGTKVGDEAVLIGSQAGETITADDMATAAETISYEITSGLTARVDRYWINASQ
>NZ_LT906441.1|WP_095140917.1|364147_364633_+|hypothetical-protein
MPSKEAIIDFLLTRKVKLSNVGPLVTYKQTLINLDGNIWLGRPRDNVYVITSYDYQQGHHLTLEGYSHPSYFRVTVNSPTHAERDFDTLRIYGDGPITFHQYTSAQHPGTPATGHDYAELEDLSPHILLPSSAFSPKYLRRWTGKRDYNLPHSPFRPSQDR
>NZ_LT906441.1|WP_157738704.1|363557_363995_+|hypothetical-protein
MKLSTVGPLVTYKKATINLDGNIWLGRPGDTVHIVTSHDYQERRHLTLKGYGFYLTITSPTHAERTFDALRIYGEGPITLTDDFSGITAIATGGEIPTTVTGHEYAEFEDLSPLIIWPFSAFSPMHLRKWVGKHRYGPHYPFRNR
>NZ_LT906441.1|WP_095140915.1|362912_363398_+|hypothetical-protein
MPSKEAIIDFLLTRKVKLSNVGPLVTYKQTTINLDGNIWIGRPGDNVYVITSYDYQQGHHLTLEGYSHPSYFRVTVNSPTHAERDLDTLRIYGDGPITFHQYTSAQHPGTLVTGHDYAELEDLSPYLLWPPAAFSPKYLRRWTGKRDYNLPHSPFRPSQDR
>NZ_LT906441.1|WP_169712408.1|357297_362934_+|sugar-binding-protein
MADFSVFGDYQNPVQFDPGVAEDFSAQLRWTSQRINIFNANLSLVQSTASRQFRGFFAEVFSRNMKVCSQDATELSEALTAAADQVDYLAEQAKLENQRREQVRDYVSAHDDWWEKGWDWLAGTDAPPSLAPAEPPATPPLNLPFTQPRQQDRSIRGASGGVTSANPSDLTRAAGILGDAAADVPPGSTLRADHDSFCRACRYGQLVVGDLFEQLDRWRELNTGDVNWLNAVAKAFEAAGGSGTLSLPNSAIKQSLRANGASVNRPDLDITVPALAGIDPATGYMEDPINSATGNFVEPEIDLGFDGVGTALVVERVYNSIQAAQGVSGVLGPGWSCVADQCLTIETDHLEWVRPDGRHVVFTAPADSSTAESDPEPIRAAEENAWLSHVDSSELPGFADVGQDASRFWLVSDNRGGRWVFTETGIWVCSGSSTTDVVRAHREHGRLSGLDTAWGRRITFSYDDAGLLAGAATNDGRRVRYTHDDRGRLVQVDRPDGCRRYEWDGTLVTRVIDAAGVCECVNTYDERGRIATQQTADGRLVHVNYLPGGVTAASDADGTRANTWIGDAHGRTVAVIDSDGGRVSMIHDRFGNLLRAVDRAGAITTHRYDERGRCTHTGLPTGASIDYSWDALDRLAAVRLDNGATTTFTYADTSRAPASVTDPVGGVTRLEWTNGLLVGTTNPVGVTLELGYDAHGDLVSLTDSDGGVTRLVRDEAGRVVEATSPAGATTRLSYDDAGRLTCRVDPDGATWTHRRDQGGRLVELVAPDGGVIRWGYGTDGRLASVIDPAGHVIDHTFDDLGNLSGLHLPDDTVWSFDHDALSRLTGLVCPDGATWGYGYDVDGNLTRVTDPCGGGQIFSTTGTAQAISTPTGRILDRVDTDIHGLPATHTNVTGASECLTRDLAGRVIEYRDPAEQTTRYDRDLAGRITRVVSPTGLVTSYHYDACGRRDAVTDPAGGVTRYTYTADGQVATVTDPTGEIAHYSYDPCGRLTASRVPGAGMSQWRYDPCGRLVFADDLVEGPRHFRYDTCGQLVASTNPAGGVTRYSYDRCGRLVSSIDPAGGLTTYHYDSCGRLTELTDPLGRTTQYTWDAVGSLVSVGRPDGTVLTHRSGPDGIDDHIDDELVTRTLTDASTRTICIDDHAGPVTRRHVLTYDPRGLLLTHTSLPVAESDEPGTGQEASDRGGSGVVSEQWVYDDEARLRRHVTAADETIEYDYDAAGRLATIRHTRLGDVRLDWDGAGRLTDLASRSSRQHWSYTDGFVTSHTGPAGSTTIGRDETGRVTELSTPDGHWYYAYDGSGALAEVHTPEAALASWAYDTCGRLTTAVTGDATRRFTYDAAGQLATVTHTADGATRNIRYRYDSCGRRVEATDDVATTTYTWDRRGWLAGLTSASGTGTKHWSVRVDAFGCPIEVTSPGGHSRLDWDVNQHQPSLQQADDTPVMALPDGGLLTSDEPDGAWRHPDIDPADPYHLASRLLTTALGHTGAHPTLGGLVWMGERLYDPETASFLTPDPQPAPTGALWQTSSYAYAANSPLTLADPMGRNPVTDAQMRQFTDTLDLQGWWGRHGHDVLSWQTGVGVGLMVVGGILTLVPIPGLGEVLLGAGLDMTIQKVTTGHVDGVEVALSGALAPIGGFALGKTATPLAQSAVARGVTLNGMQGFTMGNYHWATSPSPHNARSYASQVGGETLSGVALGALTVPAGNRIGQPIYDAMPEAIPLGHFDGARSYDIGGPGKLRKFARGVTGQLTTDDANSFRSSSYDRKLSLKPFPVYRAWGGVGEHSGKEVGRFVSRTRPTGPMQARLDSALVPQWGNAADHVTKFPMPTGRIFYEGATGEQPTIYSDDPAYTLGQLPGGGNQIMFKKIPKEWKRQCHPKKR
>NZ_LT906441.1|WP_065860994.1|356327_356993_+|EcsC-family-protein
MSKSGEALSKALVVAPNAALSVFRTIMDVAIDGAGPLPGARKAAGATLNRKGEVEAAIDALVRSHIGMAGAQGFLANLGGWVTIPMALPANMSALATLQARMVAAISHLRGYDVDDPRVRTAIFTCLLTQDSVDELIRNEKIPSTPMAMATAPVSDPELEKTVATHVVETLGSLATGKRVAVMGMKKIPLLGGGIGAGTDGMATWQVAHYAKEQFPSRRMG
>NZ_LT906441.1|WP_065860993.1|353934_355209_-|serine--tRNA-ligase
MIDPKLLRTDPDVIRRSQIARGADPSVVDELIAADETRRHAIAAHESARAEQKGLGKKIAQSKGDEKAALLARTKELSAQVGQLKDEAAAAEERFTELAKTLGNIVIDGVPAGGEDEGVVIETIGTPRDFAAEGFEPKDHLEIGEALHAIDMERGTKISGSRFYVLTGVGAQLEFALLNLAMSKAATWGFTPMIPPALVKPSAMEGTGFLGQAADDVYYLPKDEQYLVGTSEVALAAFHSGEILDDAELPRQYVAFSPCYRREAGSYGKDTRGIFRVHWFDKVEMFVHCLPADAETWHEKLLGFEKEFIEALEIPFQVLDVASGDLGLSAARKYDCYGWLPTQNRYREITSTSNCTTFQARRLSIRHRGPDGVEPLATLNGTLCAMTRIIIMVLENHQQADGSVRVPQALRPFLGGAEVLRPQN
>NZ_LT906441.1|WP_065860992.1|352573_353905_-|DUF4921-family-protein
MGDEVDDYYRELPDGTIKQRNPFTGTQVWTVPGRGARPLATPVTDARPLSADDRLTSCAFCPSRLRQTPPEKARLVADAQGSFFGHRLVENVPSWQLDDTVAQFRRIPNLFEILPWSYWRVNHGMTMTPQQRERQEAYLAHPDGRAHVCEVLDAVLAANGAGLKAEELTEREFRERSAPFFAGGHDVIVARRHYTDSGQTTADLAGSGSLSVADHRAFIGLTVHAMGDLYAQNPQARYVVAFQNWLKPAGASFDHLHKQLVAIDELGINNQTLLPKVVLNPNIHNEYGPDFAADHGLVLARNEHAVATVGFGHRYPSVEIWSTSALDQPWRMIHEEIGAVADLLHAMHVAVGPHVPCNEEWHHRPVGVGVPVPWRVNLKLRVSTLAGFEGGTKIYVNTISPAALAARLLPELFSARSAGRIAPMDLGEECKIPRGVLACTRMR
>NZ_LT906441.1|WP_065860991.1|351635_352421_+|HAD-family-phosphatase
MTFSPQLVALDIDGTIVDREGRLPDSVRAAVHRVCQAGVPVVLATGRGVTGAIGVHEELGLPAGLLVVSNGSVLAHSDPLRVVSRHTFDPSHVIDEVLRIHPQARIAVEEVGVGFRVSKHFPDGELAGEIHVEPVEELKATPATRIIVRDPDASPDVFVELANQLGMTGVTYFVGWSAWLDIAPRGVTKASGLQEACDMLGIPASSVLAIGDGNNDIEMLRWAGRGVAVGDALDQVRAAADAVTADFDDDGTAAELNRWFG
>NZ_LT906441.1|WP_095141054.1|349358_351482_-|cation:proton-antiporter
MALVLVLAVAAQWLGWRLKLPALLFLLIIGFALGQWVTPDEMFGQSLLFGGVNLAVAIILFEGSLSLKLREVRDLGKPILRLCSVTVVIAWLLMALAAHLLGMDIRVALLLGALLVVTGPTVINPILRQVRPTRRVSALLRWEGIVVDPIGAILALLVYQAITSIGGNHIGHGLAVLGWTMVVSVLVAFPIGMILTFMLRRLLIPDFLQGVIFVAVACGTVVGANLIQEESGLMAVTLLGIFLANQDLELDVVVEFKEHLQILLVGALFIMLAGRVNPDEIVRVLPVGLAFVAISVLLIRPLSVFIGLHGTETTRQERVLMAFMAPRGIVAASVTSVFALGFSDTADSIAHQAEQLMATDPQRAADLSSFAQNLAGLSDQVDQLVPIVFLMIVCTVAIYGLGIGRLAERLGLASAKPRGVMFAGSPPWAVDAAKLLRSLDVPTLIVTRRSYDLYTARKAGLRTVAADFLSEYAVEEMDLSGINYMVACTPDDNTNSIAAVQYRRVLSRANVFQVRRADEGHPKDRTTGTVSTLKARTAFNPGLTHAEMERHWREGQRVRALPITEQFGWDQFTHYVSGAVILFIVRPGSTVVATEDMGNPKMGDIVVYLGRTPRIDELPRADQDAEDGKARRRAKVHTLRESMSTSSAEEQVRERANARADAEGRPQSGKDGQHVRDVSSQPGSGDVIPGTVVPGDPDQPDARSSDH
>NZ_LT906441.1|WP_065861042.1|366042_367344_-|hypothetical-protein
MNPTSNANHPRNHRPDAGRTPDPEAWARRARLAHRTLRQYFRAGRVLLHEAVPRRRQDRRHSYEWPHSQVTAAATDLACVGIGLATAHDAGQETYWSPLLGAYTSLPRPPHGVGGRIYIDDNAWMALIHVQRVLAGIGSDKDLRRAQAIHRFIQRSRDTDPSHPAPGGVFWMAQPIWATLLSHCRSGDGSGRGDSRLRAAPDGRCSGMRVGSALSGGLSRASHLLGASHLLGASASGNHSRNTVSTMPPTQLALRLHQVTGEDCFLRDARPIYEWAREHMLSPDGLFWDNIDLAGNIDPTFWSYNQGVPIGVEALAWQITGSVVHRRRFDEIIEASLAYFRPEEPDGPFDGQPIFFNAIFLKNLLLASAIIPDDRAVRITQCYAERMWRTRCDQDSGLYRRPSADHTELLEQAAMVQLCAVLAADPRCWAWLY
>NZ_LT906441.1|WP_021103536.1|367460_369056_-|2-oxo-acid-dehydrogenase-subunit-E2
MKTYTMPDPGEGLTEAEVVSWLVSPGDTVKINDVLCEVETAKSIVELPSPFAGTVHSLAADEGQTVPVGGALIVIDDGSGADDSHPGDGADQAGTDDAGKSGGSAATDGEEKLLVGHIPAAEGGRRRRRRGAGAGQQASAARGATQQTTPDEPPVAASAHQDGLTPPSAPAGQDRSAVSPLRDADPQAHGTAPQPDPSNPPRMDASTGPEHVLAKPPARRLAAELGVDLTTVTGTGRDGVITRTDVKQAAGNDPADRKTTDSTPQPVIPAQTSGDTQLFAQSWISRTMLGGEPTAPGERRVPIHGVRKVTAEAVKTSMDTKALVTAFLTCDVTPTMDLVARLRADRAFRGLRVSPLTVWCKAVTLAMRRTPVVNASWDDETGQIVHHEQVNLGIAAATPRGLMVPVVRDAQDMTMLDLAQELTRIIAVAKEGRLQPADYTGGTFSITNVGVFGLNAGTPVVNRDESAILVLGSIDRRPWVVGTGDDERIVPRWVTTMSLGFDHRLIDGEQGSTFLHDLAEILSDPTAALLY
>NZ_LT906441.1|WP_065861043.1|369088_370054_-|alpha-ketoacid-dehydrogenase-subunit-beta
MTMIAKALNAAMADALAVDPKVLVMGEDVGTLGGVFRITDGLKERFGGLRVIDTPLAESGIVGTAIGMAMRGYRPVAELQFDGFTAPAFDQIVSQLARYRARVGGRWPLPVTIRVPYGGGVGSPEHHSESPEGFYASVPGLKVVTCATPDDAYWMLRQSIDCDDPVIFFEPKRRYYVKGEISSAASTGLHQARVVRPGTDATLLCYGPMVDTCLAAAEAGEQEGMSLEVVDLRSVSPIDMATVEESVRSTTRAIVVQEAARTQGIGAELSARLTESLYYVMEAPVLRVTSPTTPYPPSRVESSHLPDVDRILDAVDRSLAY
>NZ_LT906441.1|WP_036957115.1|370053_371112_-|pyruvate-dehydrogenase
MIQILSPDGVRTDRDDLPVHVSDAQLVDAYEKLVMARRFDIEGTNLQRHGELGLWPPLIGQEATQVGAWLALGSADQVFPTYREQALATWMGVELSQVLATWRGTAHCPWDTVATHFSAYPVMIGSGTLHAVGYAMGIQRDKAADPSVDAAVLDFHGDGAMSEGDTNEAYVFAAAMKAPVVFCAVNNQWAISEPTSVQAPTSLYRRGLGFGIPSVQVDGNDVLAVAAVLSAALDHARSGRGPVMVETWTYRTGAHTTTDDPTRYRTAQTDEYWAGLDPIVRMQKYLRSRELIDDAWLAELDERAEQFGAQVRDAVHQPDPDPVALLDDVYAEPTPDVRADQRELAEWLQGGQ
>NZ_LT906441.1|WP_065861044.1|371633_373196_+|FAD-dependent-oxidoreductase
MNARRVIVVGGGVCGLVAAHSLQKSGCQVTLVEASDGLGGQVRSAQLDGQAVDLGAEAAPLRAPGVQKLITELGLDESMIHPTQGTSLLSSRHGVVPLPDGVTPVGPTKLFPTIASRVLSPADLLRAGLEPVLARPQPAGVTVGEFIGARFGKGVATAIVDPLVGAIHAADINAFALESVSPGLVRTATSGDSILQETVRRELGLGENGSRPGRHAKHPTTAPRTPTMGSWRQGMGELTTALSADVTVLTGTRAVALTRGEAPQDATAQSVTTRGTTARGATRSGMDTDDVTRTEDRTASANGREQQGTSGRWLLEVADESGQRTLAADSVVLATPTAVSAELLRSVAPDTASTLSRERAVTVAAVVLRIDRPTHPLAEAVDWFVGSAWSPLIRQVVNLTNKWPDRHPADTHLLRLNVGRDRGINIDQWSDEELGAASVEELGRIGLRVNPHNHLVHRFTAAMPQPGPLHHERIDAVRTGLSRLSGLFAAGAGVNGAGVPNAIIAGHQVATDVLEEKLHD
>NZ_LT906441.1|WP_065861045.1|373188_374475_+|radical-SAM/SPASM-domain-containing-protein
MTELATPRHGSTGHPGHSGGHPGAAGGHPGGHPGGHPGHGPLVREIKHDLNDKPFLVIWEVTRACALVCQHCRAEAQHRAAPGQLTNAEGHELIDQLTSYERPYPMLVLTGGDCFERPDLVDLIEYAVGKGLHVSISPSVTPLFTRERVKAVQDAGVSVMSMSLDGGSAETHDAFRGFPGTFDRTIEACHMLNELGMRFQLNTVFTAKNIHEAPQMLKNAIDLGAFMFYTFMLVPTGRGQHLDMLTPHEREDVLHWLHDNSTRIAIKTTEAPQYRRIAFQREAVRQGKAAPARHGELYHWLTKETHELLGENIEEPRPPRTPLAINSGSGFAFIDHTGDVYPSGFLPIHCGSIKDKPFPQIYRESEVFRALRNPSGFEGKCGACEFNHFCGGSRSTAYAMTGNYLASDPSCAHIPAGYTGELPEGIER
>NZ_LT906441.1|WP_095141056.1|374679_377040_+|5'-nucleotidase-C-terminal-domain-containing-protein
MIGSIAVTGPAAGATPSESPSPSESATPSGASTPTGSAAPTGSASAAPSASASASSSPSKDATPSTSAATGSAQASSSPATCTPDSDVTVFSFNDFHGRIGEAAKLFTPVQQARTDKGADHVLLTSAGDNIGGSTFESGSQDDNPTIDILKDAGLEASAVGNHEFDKGLTDLTEHVNKRIDGDFPYLGANVYKKGTTTVTDDLRASTVFTKGGVRIGVIGAVTKDLPSLVSPAGIADLTIGDPVEAVNAEARRLKSEHLADVVVASIHEGAASGGDFAPAKVNGNFAPIYNDLSTDVDVAFNGHTHQLYSWKGRNGAPLLQAASYGTHLAQVDLAYDTRSAQLCSTAAKTVAAPKQANLADPVIARINSDTEAARKQADVIGAKVIGTATAPITTASDAQDSSFGSSVRNRESAMSNMVAQMFKDTLGKDDPNFIGIQNPGGTRASLQSGEITYKDAALVLPFANSLMTTTVTGEQFKQVLEEQWQHDEKGQVPSRPFLSLGLSNNVSYTYDENLPEGQRITSVWVNGKPIDPKASYTVGSGSFLINGGDNFHTLAKGSKPVDTGKIDLDTWVGWIKDQGKLTPSFARRGVAVTATRVSDTAFSFTFGQTAEKGIAPDTLDLTSKGAPTNTKLVARTSQDANAKALATFDVKDGVATGTIDFSKTSLKSGTHVVYFTAEESGTVIPVEVTITRDDASTPEPSATAGTPSSNPSPSVDVTPGADETPSATGATATPSDPATPSATPSAAAGTSAAVGVESGAGANGTIPGSDVTSAGATPALPRTGN
>NZ_LT906441.1|WP_065860867.1|377814_379137_+|aminotransferase-class-V-fold-PLP-dependent-enzyme
MTYRYDNSEVGRWAFGTRSIHAGQPVDATGARNMPIYNTASYVFDSCENAAKRFSLEEDGPIYTRLNNPTITALEERMASLEGGSCAVAFASGMAAITATVLNLASAGDHIVSSPRLYGGTLTLFEFTLARLGIEVSFVDDPDDPQSWRDAVRPNTKLFFAESTANPLADILDVPAVAAVAHEAKVPFVVDNTVPTAALIRPLELGADVVVASLTKFYTGNSTGIGGIAIDGGTFDWTVTRDEQPIFPGFANPDPTYHGIVYAGLGEMAFGVKLRVGVLRDIGGCLSPFNAWVTLQGLDTLELRIQRHCSNALKVAQFLADQPQVTKVNYPGLPSSPWYPVKEKLGLDGVGAVLSFDIKGGRKEAWAFIDALKLHSNVANIGDSRSLVVHPATTTHAQCDERGQEVAGITEATIRLSIGLESPEDIIDDLKLGFAALSQA
>NZ_LT906441.1|WP_095140918.1|379257_380487_+|homoserine-O-acetyltransferase
MYTIRTPRRGGMVMKYVQLGDFTTQAGAVIPQVRIAYEMWGQQRGNNVILVEHALTGDADACSWWPGLIGPGLVIDTDRYCVICTNVLGGCSGSTGPGTPAPDGRAWGSRFPALCIRDMVAAERQLLALLGIDELLGVIGGSMGGARALEWAAMYPEMAGSACVIATSARSSAWQIGIQTTQICAVEADPDWQNGDYYDTGRCPDRGLGAARRIAHLTYRGERELDARFGSAPQKGEEPFSAYRSSQGRFAVESYLDHQASKLLQRFDAGTYVALTHAVNRHDVGRGRGGVKEALASITIPVHVAGVDTDLLYPLHQQEFLTEHLGNPIGLDTIVSHVGHDGFLTETEQLQNVFAHYLDAVDLDGRGGPHLLQERASGLYSVDVDSARPFADASSAEPYAHGQKVTAQK
>NZ_LT906441.1|WP_095141057.1|380674_381133_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MSKRVIFVCRGNICRSPMAERIAQRFFADAGLDVEVTSAGITDEEHANPMDPRARAVLNRRGYDVRPHTAHQISAEEIRRADLVVAAEPYQVQTMARMAPSTRNIVLLRDYDPSVAPGTPLDDPWFGDASGFETIADQIEAAMPGLVAAIRK

Crispr_ID: NZ_LT906441_5

• CRISPR_ID: NZ_LT906441_5
• CRISPR_location: 454173-454245
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT906441_5

Consensus_repeat	Method
GATCGCCTGCCATCTCCGAGCAT	CRISPRCasFinder

spacers of NZ_LT906441_5

>5.1|454196|27|NZ_LT906441|CRISPRCasFinder
CCTGACACCCCACCCTCTGCCGCATCC

CRISPR arrays and Neighbor proteins around NZ_LT906441_5

CRISPR arrays

The CRISPR arrays of NZ_LT906441_5

>merge|NZ_LT906441|5|454173-454245|CRISPRCasFinder
GATCGCCTGCCATCTCCGAGCATCCTGACACCCCACCCTCTGCCGCATCCGATCGCCTGCCATCTCCGAGCGT

>NZ_LT906441|5|5|454173-454245|CRISPRCasFinder
GATCGCCTGCCATCTCCGAGCAT	CCTGACACCCCACCCTCTGCCGCATCC
GATCGCCTGCCATCTCCGAGCGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_023034618.1|437130_437550_+|hypothetical-protein	unknown	unknown	gnl|CDD|374623
NZ_LT906441.1|WP_021103619.1|467078_468986_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_021105260.1|450650_451823_+|L,D-transpeptidase	unknown	unknown	gnl|CDD|380079
NZ_LT906441.1|WP_021103616.1|464116_464311_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_065860850.1|439758_441096_+|methylaspartate-mutase	unknown	unknown	gnl|CDD|379405
NZ_LT906441.1|WP_021105265.1|459604_461014_+|class-II-fumarate-hydratase	unknown	unknown	gnl|CDD|234779
NZ_LT906441.1|WP_021105262.1|454771_456055_+|citrate-synthase	unknown	unknown	gnl|CDD|99867
NZ_LT906441.1|WP_036957141.1|456523_457771_+|chloride-channel-protein	unknown	unknown	gnl|CDD|238505
NZ_LT906441.1|WP_021105264.1|458210_459092_-|DUF559-domain-containing-protein	unknown	unknown	gnl|CDD|367957
NZ_LT906441.1|WP_084204764.1|437476_439753_+|cobalamin-B12-binding-domain-containing-protein	unknown	unknown	gnl|CDD|379858
NZ_LT906441.1|WP_021105258.1|448054_449641_+|amino-acid-permease	unknown	unknown	gnl|CDD|236830
NZ_LT906441.1|WP_036957139.1|452051_453923_+|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl|CDD|223868
NZ_LT906441.1|WP_095140926.1|442243_443782_+|amino-acid-permease	unknown	unknown	gnl|CDD|236830
NZ_LT906441.1|WP_081659020.1|462950_464096_+|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl|CDD|366370
NZ_LT906441.1|WP_095141061.1|443833_445042_+|alanine-racemase	unknown	unknown	gnl|CDD|143481
NZ_LT906441.1|WP_021103612.1|461521_461713_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_036957143.1|464642_466154_+|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl|CDD|131739
NZ_LT906441.1|WP_036957164.1|461805_462498_-|suppressor-of-fused-domain-protein	unknown	unknown	gnl|CDD|377450
NZ_LT906441.1|WP_065860849.1|441092_442175_+|alanine/ornithine-racemase-family-PLP-dependent-enzyme	unknown	unknown	gnl|CDD|143490
NZ_LT906441.1|WP_021103602.1|446038_447154_-|alanine-dehydrogenase	unknown	unknown	gnl|CDD|240630

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_023034618.1|437130_437550_+|hypothetical-protein	gnl|CDD|374623	pfam16552, OAM_alpha, D-ornithine 4,5-aminomutase alpha-subunit. OAM_alpha is the 12.8kDa, alpha subunit of d-ornithine 4,5-aminomutase, or OAM, an enzyme that converts d-ornithine to 2,4-diaminopentanoic acid by way of radical propagation from an adenosylcobalamin to a pyridoxal 5'-phosphate cofactor. OAM is an alpha2-beta2 heterodimer comprising two strongly associating subunits. The packing of the alpha subunits against the beta helps to form the substrate and co-factor binding-regions.	5.90982e-53
NZ_LT906441.1|WP_021105260.1|450650_451823_+|L,D-transpeptidase	gnl|CDD|380079	pfam17964, Big_10, Bacterial Ig domain. This entry represents a bacterial Ig-like domain found associated with transpeptidase domains.	8.84758e-38
NZ_LT906441.1|WP_065860850.1|439758_441096_+|methylaspartate-mutase	gnl|CDD|379405	pfam13941, MutL, MutL protein. This small family includes, GlmL/MutL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family.	8.57819e-169
NZ_LT906441.1|WP_021105265.1|459604_461014_+|class-II-fumarate-hydratase	gnl|CDD|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_LT906441.1|WP_021105262.1|454771_456055_+|citrate-synthase	gnl|CDD|99867	cd06114, EcCS_like, Escherichia coli (Ec) citrate synthase (CS) GltA_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. There are two types of CSs: type I CS and type II CSs. Type I CSs are found in eukarya, gram-positive bacteria, archaea, and in some gram-negative bacteria and are homodimers with both subunits participating in the active site. Type II CSs are unique to gram-negative bacteria and are homohexamers of identical subunits (approximated as a trimer of dimers). Some type II CSs including EcCS are strongly and specifically inhibited by NADH through an allosteric mechanism. Included in this group is an NADH-insensitive type II Acetobacter acetii CS which has retained many of the residues used by EcCS for NADH binding.	0
NZ_LT906441.1|WP_036957141.1|456523_457771_+|chloride-channel-protein	gnl|CDD|238505	cd01033, ClC_like, Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.	5.34364e-78
NZ_LT906441.1|WP_021105264.1|458210_459092_-|DUF559-domain-containing-protein	gnl|CDD|367957	pfam04480, DUF559, Protein of unknown function (DUF559).	6.24837e-07
NZ_LT906441.1|WP_084204764.1|437476_439753_+|cobalamin-B12-binding-domain-containing-protein	gnl|CDD|379858	pfam16554, OAM_dimer, dimerization domain of d-ornithine 4,5-aminomutase. This family is the short dimerization domain of the enzyme D-ornithine 4,5-aminomutase. It sits between the TIM-barrel pfam09043 and pfam02310. The enzyme is an alpha2-beta2-heterodimer that converts D-ornithine to 2,4-diaminopentanoic acid by way of radical propagation from an adenosylcobalamin to a pyridoxal 5'-phosphate cofactor.	1.21946e-28
NZ_LT906441.1|WP_021105258.1|448054_449641_+|amino-acid-permease	gnl|CDD|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_LT906441.1|WP_036957139.1|452051_453923_+|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl|CDD|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	4.86446e-31
NZ_LT906441.1|WP_095140926.1|442243_443782_+|amino-acid-permease	gnl|CDD|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0
NZ_LT906441.1|WP_081659020.1|462950_464096_+|mechanosensitive-ion-channel-family-protein	gnl|CDD|366370	pfam00924, MS_channel, Mechanosensitive ion channel. Two members of this protein family of M. jannaschii have been functionally characterized. Both proteins form mechanosensitive (MS) ion channels upon reconstitution into liposomes and functional examination by the patch-clamp technique. Therefore this family are likely to also be MS channel proteins.	4.81096e-34
NZ_LT906441.1|WP_095141061.1|443833_445042_+|alanine-racemase	gnl|CDD|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	1.69988e-165
NZ_LT906441.1|WP_036957143.1|464642_466154_+|CCA-tRNA-nucleotidyltransferase	gnl|CDD|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_LT906441.1|WP_036957164.1|461805_462498_-|suppressor-of-fused-domain-protein	gnl|CDD|377450	pfam05076, SUFU, Suppressor of fused protein (SUFU). SUFU, encoding the human orthologue of Drosophila suppressor of fused, appears to have a conserved role in the repression of Hedgehog signaling. SUFU exerts its repressor role by physically interacting with GLI proteins in both the cytoplasm and the nucleus. SUFU has been found to be a tumor-suppressor gene that predisposes individuals to medulloblastoma by modulating the SHH signaling pathway. Genomic contextual analysis of bacterial SUFU versions revealed that they are immunity proteins against diverse nuclease toxins in polymorphic toxin systems.	3.4713e-21
NZ_LT906441.1|WP_065860849.1|441092_442175_+|alanine/ornithine-racemase-family-PLP-dependent-enzyme	gnl|CDD|143490	cd06815, PLPDE_III_AR_like_1, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1. This subfamily is composed of uncharacterized bacterial proteins with similarity to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.	1.67647e-167
NZ_LT906441.1|WP_021103602.1|446038_447154_-|alanine-dehydrogenase	gnl|CDD|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0

Protein sequences

>NZ_LT906441.1|WP_036957139.1|452051_453923_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MPTVQFVPYPYGVPGREESTVNRSMHALRGFAATAALTATCVGVMPAAMGASAQATTATKQATADVFVRDAPANSGKPIGVLPKGRRVHVTGADVMGWTPVRFNGHSGYIFRAYLDTPDSANPIVTKNGRQGSRTTTANLNFRVGPSMSTPIKQVLPRGTRVHLTGTTAGRWVKVRVGDATGWVFSDYLSTSGRTAEPPRARKHARTEASHHERKPHSSAVNDSKKQSVKPTTPKARPDEAATSRNNSALVTPAEHSKSTHQVNPSPSSSAKPTETGDPAHQSAPTEKPTKASGMTTPTPSASASSSATPAPAAKPTQSTSPGKAATPAPAKESTKSGPTGAAWTTDRLNLRTNPSTKDKVKGVLPRGTKVTRTGTMSGTWVQVTTSDGTGWVAEAYLSSSAPAKHAPEASAKHVKKATTKHTAKKPAKPKTPSITGTRFATTTLNVWDAATGSSHSGEISRGKAVKITGTVRNGRAEIVVSGQSRWVTSRYLATSKPAAHKQKHKPATKKAKPATSKKSTSSRSTSRGAITGQCSASYYDEDQMTANGERFNTNDLTAAHKTMAFNTRVRVTNPANGKSVVVRVNDRGPYVAGRCLDLSRAAFSQIASTGAGVVNVNYTVLG
>NZ_LT906441.1|WP_021105260.1|450650_451823_+|L,D-transpeptidase
MLTASALVSGAVIAGCAPSPDSPNGRSADKETQTPTPTPASLNLSAEHPLTEVEPGDSLTFTVINGSVDKITVTNADKEDVEGTFTDGVWKPKHPFRPSRSYEVHTTLANADPSLPAPKPLVTSISTVKGEGNAGNILYEDMDDAGIGMPVIILFNHDVVDKDKRAAIEKAMTIEVSPEQEGSWGWLDGTHLMWRPKQYWKPGTKVSVKGDFGGLKTASNRWLLNNLTGKFSIGKSRVVKISTSDHRLDVFIDGKKARSMPCTTGKSGFITRSGTKVIIEREADKVMDASTIGISPGSSEYYNLEVKWALRITYTGEFIHAAPWSSRSQGRANVSHGCVGLATDDAKWLFKTCRAGDIVETTGSNRHFKPEEGIGCWVYDWAGWQKLSAV
>NZ_LT906441.1|WP_021105258.1|448054_449641_+|amino-acid-permease
MTATARGKRTPTELDSGDAPELSRGLENRHLQLIAIGGAIGTGLFLGSGRTISLAGPSILLVYLIIGFFLFFVMRAMGELLLSNLAYKSFADFATDLIGPWAGFYIGWTYWMCWVVIGIADTTAITGYLAEWFPNQPKWIPALVVVVLLTGLNMVAVKIFGEMEFWFAMIKIVTIVALILVGGYLAITSFQPPVAGAPPASVAHLWDRGGFFPTGFMGFVAGFQIAIFSFQGIEMAGTAAAETANPEHNLPRAINSIPARVIIFYVLALGVIMSVQPWDLIDPDKSPFVEMFSFIGVLIAFHIVNFVVLTSAASSANSGVFSTSRVMYGLAREKNAHPVFAKLSDRHIPRNALILTAFCISPSIILVMLSDSVMDAFSLVAGVSSVLYLSVWGLILVSYLCYLRKYPERHEESNFKMPAGRFMSWAGLVFFALIVVMLAMNKESRMALLAAPVWVLFLALMYRALRETRSTAVPIDYDAERIREAEKVRQHVDEYHANKAAQKNRRGSDKAQNLDGEIHDEIREGHGK
>NZ_LT906441.1|WP_021103602.1|446038_447154_-|alanine-dehydrogenase
MKVGIPTEVKNNEFRVAATPAGVNALVGHGHEVLVQQGAGVGSAISDDEYAAVGAKIVPSADEVWDSSEMILKVKEPIAEEYGRMHDGLLLFTYLHLAADEKLTHELLDRGVTSIAYETVEMDDHSLPLLSPMSEIAGRLSTQVGANCLMQPAGGNGTLLGGASGVAPGKVVVLGGGTAGLCAARVAEGMGARVTIFDVNVARMRYIEETFGGRIGTEYSSSLSVGKAVKDADLVIGSVLVPGARTPHLVSDEMVASMKPGSVLVDIAIDQGGCFEGSHATTHADPTFRVHDSVYYCVANMPGAVPHTSTYSLTNSTMRYCTLLADKGWKDACGIRPELGRGLTTHAGQLFSAPVGEALGIESHCSCEVLD
>NZ_LT906441.1|WP_095141061.1|443833_445042_+|alanine-racemase
MKASAVEAKSDARTVPSAAATFSSAVHHRPRCSAPSTATIDLTAINHNLAQVRDLVGDRKVLMAVKGDAYGHGAVQVARHVQQTGAADWLGVATVAEAQELVEAGVRLPILKFSPADPGNLETAILYGVRLTVVDERTVRQANEVAQAMGRCANVHVAIDTGMGRIGLQPEHLADVVAAVDRADHLRLEGVFTHLPVSDAPDGREFTAAEIAHFVDTVQMVEARRGHIPVVHMANSGAIIGQSLGPTTMVRAGIMSYGYNPNPAMGSLGLRPALSWTSHISFLKQVEPGQTVGYGRTWTAQRSTTIATIPVGYADGYSRRLSNRGQVLIGGEFRPVVGRVCMDQLMVDLGPSSTARVGDDVVLLGEQAGHTITADDLAEQLDTISYEITCDIGKRVDRRWVS
>NZ_LT906441.1|WP_095140926.1|442243_443782_+|amino-acid-permease
MGTSTSASTPDHHRPSRLTRPTRVPRPSQRPEALPGEPELQRGLSNRHLQLIAIGGAIGTGMFMGSSSTIHLAGPSIILVYTVIGVFMYFMMRALGEMLLSNLKYKSFRDIAEDMLGPWAGFISGWTYWFSWIVAAMGDMAAITGYAQYWWPNIARWVPATVLVLVLLLLNIIAIAVKFFGEAEFWFALIKLVAIAILLLVAIWLVATKFVSSSGEMATVSNLWNDGGFFPNGINGFLAGFQIAFFAFVGIELVGTAAAETKDPTTTLPKAINAIPVRLALFYVLALAAIMCVVPWRSVVPGVSPFVTVFGMAGFTAAAGVMNFVLLTAAASSDNSGLYSTSRMLYGLAHDGQANQIFGKLSRRRVPQNALLLSCVILLCGVSFLYMSDSIMESFALVTTVAALMFLFTWSLIMVCYLVYRKRWPELHEKSIYKMPGGVPMAWAVLGFYLFSLVVLCLDPVTRKAVMATPVWFILIVVMYFAHKRRAAKQNGLVTKSSVEEAQPHHEDGLDS
>NZ_LT906441.1|WP_065860849.1|441092_442175_+|alanine/ornithine-racemase-family-PLP-dependent-enzyme
MIRPTPRLEIHTDRIAENLHAIVGQCTEHGVQVAAVTKVLGAHPALLAALPNTGVSMVADSRLTNLERVAAADLGLPTLLLRPPAPRTAARTVQVADASLNSSLVTMQALSEAAEMVGTRHGIIIMVDVGDLREGVWPDHVVDLVSQTSHLPGLDILGLGTNLACYGGVIPTADKMELLVNLRDEASRVTGLPLELISGGNSANLPLMVSGQMPAQINQLRIGEAAILGRNTLDRSAWPGTRQDTVELVTGVVELERKPSIPQGERGQDAFGQTVKFVDRGVRLRAICDLGRQDVAPEDLTPVDPGHIVLGASSDHLIIDVTDGDTTLRVGSEIRLRPTYGGLLAASTCADVWKTSADER
>NZ_LT906441.1|WP_065860850.1|439758_441096_+|methylaspartate-mutase
MTVLTTLEIGSTITKANAFRVENDHLDHVGQGFAATSVSAGDVRIGADAAISQMRDQYGLALDAGEIFVNSSAAGGLRMTVHGLTSSMTARAAREAALGAGAIVVHTTVGPMDEFDVEDLCEARPNIVLLAGGVDHGEKRIVVDNARLIASAHLGVPVIYAGNAQARHRVETVFAEAGEPLTCVSNVFPQVDVLRIDPVRAVIQDVFNNHITAAPGMGGLAQLSTHDILPTPGAVLRATELFTEAVGDAVVVDVGGATTDVHSVTDGTLEWTSRTVDPEPRAKRTVEGDLGVFVNARHVAAMTAEGEDEERLSNLRAIPATDDESEVTRWLTRRAVEVGMGRHAGAVVELFTPTGKTQIVRGKDLTAVHWVIGTGGALTRVPGGDAILARMCTGAGTQLMPDAHATILIDRDYRFSALGTIASSYPDLVRETFARWVHEETGDPR
>NZ_LT906441.1|WP_084204764.1|437476_439753_+|cobalamin-B12-binding-domain-containing-protein
MGSSTAARCRQLEPQHCREHIMSTEYDALDPNEKLDIERIFEDLEHYHPRRKGWTWRNTPAEGVDMGDFHYKDMSTPLRNSQPLPAAKYFGGVDPQPAPVVTSEIASGHFEDDLRRMRMSAWNGADHIMVIRTTGQSHIDGLLEGTPEGIGGVPITRKELRASRKVCDLIEDEVGRPINFHSYVSGVAGPEVAVLFAEEGVNGAHQDPQYNVLYRNINAYRSYVDAGEAKKVMAGARIFQIDGAHNANATARYGWKVMPELMVQHGLNCMFSALVGMPKDLVGLSTVPPSAPPAPKLWYDLPYAVALRDLFSDYRMRAQQNTRYIESDLAEAIRTHTVDTLISMLTSADIQSTITPDEGRNLPWHVNSVRGVQTVKQTWSALDGIKEMVTVKRDGPLGSMVRDLKERAIGFLAEILHVGGYFVAVEDGFFVDSAEFPERNHDGIARDGQGGVSAGTVIERDPDYLAPVCDHFGTNNLPEGLDKPCDLIDGCTLCVPEKIVYIDELDPSDSVGVRLERTRPYRDGTKLRPEAEWAGDGVVLVQFTIPAGEDIAHEAALEMARQMGLEDPQVCNLQVLQPAEGCFVEVKGKVGFDVDPSKLTIPEKIELLPEDEMREFVKEHNVTVVAGTVGEDEHSVGLREILDIKHGGIEKWGVKYHYLGTSVPIEKMVDAAIETGADAILISTIISHNDIHRTMMRKLNDLATEKGIRDKTVLIAGGTQVSREMAAETGLDATFGRGSHGIDVLDAIVRGMRVRRGM
>NZ_LT906441.1|WP_023034618.1|437130_437550_+|hypothetical-protein
MSTADEERVARFEDLRAELATLDDDALKARFWQLCEEVMTPVVDFSRTHTTPSIERSVLLRMGIDSVTTHAVVENVLNAGLLGKGAGHAVLRLSRRDGIDLRAAAQRIADDPTVLDGLFDGSPLPSARATALQGAHHEH
>NZ_LT906441.1|WP_021105262.1|454771_456055_+|citrate-synthase
MTETARFVDVDKDLNLPKVQATDGQTGYDVAGLLRSTGNVMLDPGFVNTASCESEITYIDGNNGVLRYRGYPIEQLAEHASFLETAFLVLYGELPTASELNSFEEAIRRKTLIDERMRDLFRCFPRRSHPMPVLSAGIMALSTFSGSTAEKDLDSLNKATLSLLAKVPTLAAFAYKNSMGQPTLYPDNSLGYVENFIRMSFGFPTEPYEFNEAITRGLEVLLILHADHEQNCSTSTVRMVASSGANLHAAVAAGVNALSGPKHGGANQAVIEMLQFIRDNDLTTKQFVEKVKNREDGVKLMGFGHRIYRNYDPRAAIIKKHADEILKLQTGRKDLLEIAKELEETALNDDYFKERKLYPNVDFYSGLIYEAMGFPLNMFTVLFAIGRLPGWIAQYREQVTGSEKIWRPRQIYTGCDVRDWIPFEQRS
>NZ_LT906441.1|WP_036957141.1|456523_457771_+|chloride-channel-protein
MVVMAILLTGASSGVIGGLLGRINIAIEVLAFGRHVSASTSGIGEVTFWRRLCAPVIGAAMAGLAWGFLRRREVVTVRTTLDAKQPRRLDPLVQLIDAFAQLIIVGSGSSLGREAAPRQLAAVSAQWVAEVCEADFPLRRTLIASATGAGLAAVYNVPFAGALYALELTLRPNPRTRQGWQQIAICTTVSLLATAMAWLTNHNAPTYTPDPVSTAGWGTWGRATLLGMAVLLVGPLADMVFSHAKRVNPKAHHLYWTVPLGGAIVAGIALLVPQVPGNGQIMMGTLLGTRLTWQLAATFLVAKLLATSVSLTSGAAGGLLTPSLAIGGSTGALLGVLTGATSGETVALVIAGAAGVLAMTQRAPLFAIAFALELTRPKSIVIPLVAVTVGIAWAGWALITSQDHRHGAVGRAPRR
>NZ_LT906441.1|WP_021105264.1|458210_459092_-|DUF559-domain-containing-protein
MELVDILEANGGVAKISSVGRVARQARQAVREGWAVRPLPRIIMTNVAARKPESWIRAVMLWRPDAVFTGRAALYLSGLRELELTVVDVVIPHVMPRLPRRRWLRFHRSGCEPVVGDRNMIRTTHAYTCLRLALMGDWEAATACLRAGLVAPDDLREARPRVARKAPAAVVRRVLRQLLDEPWSVAEHELHSLLRHHRISGWKANKRLWINGRVVFPDLWFKYEKAIVEVDGYAFHGRRRDYEATARRHALLGGAGWRVVRVTPAMIRDEPGLVLDAIRSVIWSRHRGIPVSV
>NZ_LT906441.1|WP_021105265.1|459604_461014_+|class-II-fumarate-hydratase
MAEMRTEKDSMGTIDVPADHYWGAQTERSLHNFEIGRDTFVWGRDMIRALGTLKKSAALANKELGELPGDVADLIVKAADEVIAGKLDAEFPLVVFQTGSGTQSNMNTNEVISNRAIELAGGELGSKAPVHPNDHVNRGQSSNDTFPTAMHIAVVTAINERLYPAVTQLRDTLDKKAKEYDDVVMVGRTHLQDATPIRLGQVISGWVAQIDFALDGIRYADSRARELAIGGTAVGTGLNAHPKFGVTVAKHVSDETSLDFKQADNLFANLSAHDALVQVSGSLRVLADALMKIANDVRWYACGPRNGIGELLIPENEPGSSIMPGKVNPTQCEAMTMVATRVFGNDATVGFAGSQGNFQLNVFKPVMAHACLESIRLIADACVSFDEHCAYGIEPNTAKIKENLDKNLMQVTALNRHIGYDLASKIAKNAHHEGISLRESALTVGGMSAEDFDKWVVPADMTHPSAAED
>NZ_LT906441.1|WP_021103612.1|461521_461713_+|hypothetical-protein
MGAIATDAIILITYILIILLAAFILWMIIDVRNNVKRIADSLDRLASSESRRNGEAHHQSPVN
>NZ_LT906441.1|WP_036957164.1|461805_462498_-|suppressor-of-fused-domain-protein
MNDLPDAAASPAGGPAGDASAPVNASDLPEHLAVPSQMPPTGPAVASAAIRAIGGQPETDAMVDAAGDLRIDMLSLHDAPAPEWCTWSTVGLHTMSNELPLESGESVSVPAELMTVGAPGSDVMGKVLGSCAFAVMRDNWLMAPGIVFGDVVALYDPQATTPHLMWVHPFTAGGLDRIDVGDGFFVHWLMGMPITDAERIWLEANGYDAFIAKLENGGVNYTDLRRDSLV
>NZ_LT906441.1|WP_081659020.1|462950_464096_+|mechanosensitive-ion-channel-family-protein
MSIPLAWGSSCDWTPGLLWEIVTGEESPLTTAFPIERRSPRKRQNHDLAHFAFRAHLLPESLSTLTAHGDHGWVQAVLALIRSCRLDVVAYPQVERAVNRRAAVKFHTEILTWSTLIQLLLIIAIAIVLRWLLRKGVNLVVSAMLRTAKKRDEAMGLGRMLPKTSERQTQRTKTVGGLLSNLGVAIILTVAILAGFSTIGVKIGPILASAGIVGVALAFGAQSLVKDFLSGLFIIIEDQYGVGDTVNIDELGGVVEEVGLRTTRIRDFNGVAWYLRNGEILKVGNISQGWATSFTDISVHADEDPDEVTRVLNMVLDELAAAYPDSILEQPKVLGVGDITGGTMTFQVWTKCVAGTQFEVIRAMRQMAKTAFAEARIRGAF
>NZ_LT906441.1|WP_021103616.1|464116_464311_+|hypothetical-protein
MGKIVLLAVLVSLPVLIAAAAMVVIVMTRFHRPADVPSASASRSESADDFESADHPDDFENDAQ
>NZ_LT906441.1|WP_036957143.1|464642_466154_+|CCA-tRNA-nucleotidyltransferase
MANVPPSPIASSLTALRPCAQEKGLTVAQLLEHRVDRLWQSAPLIADLGALFADSGHDLYLVGGSVRDALMGMLGHDLDFTTDAHPDEIEALLRQRTRTTWDIGRAFGTIGAMIDDWQVEITTYRTDVYRPDSRKPEIAFGDTLNDDLIRRDFTVNAMALHAANREFVDPHHGLTDLASGMLRTPFPPQRSFSDDPLRMMRAARFTSQLGFTVTDEVRAAMTGMADRMSIISAERVRDELSKLLLTDSPREGLMLLVDTGIASIVLPELPALRLEPDEHHRHKDVYEHSLTVVDQSIELEKRRGHDPDLVGRLAALLHDIGKPATRRFEPGGKVSFHHHDVVGAKMARKRLKALNYPSDIVKAVCLLVELHLRSYGYGDQGWTDSAVRRYVRDAGDQLERLHILTRADCTTRNRRKAERLEFAYDDLERRIAELAAQEELDATRPDLDGGQIMAILGIEPGPVVGRAYKFLLNLRIEEGPHTTDQAEKALKAWWAQQPESTQS
>NZ_LT906441.1|WP_021103619.1|467078_468986_+|hypothetical-protein
MAIDIMSVSPDSGSPKDPITIRGTVTNISGKNLRWVQVSFWRSLDPISGYDDMGSVLQSPPEIPTGARWFREPNEASINNITDPESTQTFANGQCATFTVTATPEKMGLTDTSKAYLIGVHAQATPEHGSRHTVGRARTFTVLTDSHTSAWSSSLVVLNSTPSTRIDGTFIDNHLADELDGRLLELVDQAIATRRTVLVDPELLDEVTAMTKGYQVAQGDKSAPGTGGKAAKAWLDRFTTMLKAVPAYRLPYGSADVTGVAATTSHRDVLTQIKESLPPDNPAAKLPLAILDETGELTKPALTMLTSTLHPALVVTSALPTATSPRTSNGTTVIPLATDALEGGPPPSPSMPAQVRGRALAQALLTGTQNSPLVTATHSPDQVKSVTPPAWMHQVDLRSIKPTRVQLPALNPRSSARLLGPDWARQLEQTTDEAQAWTKLLSDPGKVSQPLGRISVAGLSTRMSASERRLWWHAAMAPARRYLSGEHIELHSASSFVMSSSSNEFPLAVTNHLDQAIDVKAVIVSENPQRIDIPNTKVITVRPGETQALKFSPHASSNGQVRMTATLTSRDGRPIGQTETFVVKATQMDDIGWVIIVVSGGIVIAATVLRIRQVRNRGTGRNNSNPVASGAAHES

Crispr_ID: NZ_LT906441_6

• CRISPR_ID: NZ_LT906441_6
• CRISPR_location: 1343146-1345067
• CRISPR_type: TypeI-E
• Repeat_type: NA
• Spacer_info: 31 spacers
• Cas_protein_info: cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

Consensus repeat of NZ_LT906441_6

Consensus_repeat	Method
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CRISPRCasFinder
NNGGGCTCACCCCCGCGTAGGCGGGGAAGAC	CRT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	PILER-CR

spacers of NZ_LT906441_6

>6.1|1343175|32|NZ_LT906441|CRISPRCasFinder,CRT
TGCGAGGCGTTCCGGTGGCAGGCCGGACAGAA
>6.2|1343236|34|NZ_LT906441|CRISPRCasFinder
CTCACCAGGACGTCGTAGGCGATCGCCGGTCCGG
>6.3|1343299|32|NZ_LT906441|CRISPRCasFinder
CGTGGCTGGTGGACCAGCTGCGTTCGGCGAAG
>6.4|1343360|32|NZ_LT906441|CRISPRCasFinder,CRT
GAATGGCTCGCCGTGGTTGTATTTTGCTTCCA
>6.5|1343421|32|NZ_LT906441|CRISPRCasFinder,CRT
TTTGGTGACGATGACGCGATACGCCGACGGTG
>6.6|1343482|32|NZ_LT906441|CRISPRCasFinder,CRT
GCGATCGGAAAGGCTCCGGGATCGGTGTGGTC
>6.7|1343543|32|NZ_LT906441|CRISPRCasFinder,CRT
GTTGGCCACGATGACGAACTTAGCGGCGATGC
>6.8|1343604|32|NZ_LT906441|CRISPRCasFinder,CRT
AAACGCGAACGCCCCATGTCGGTGATGACACC
>6.9|1343665|32|NZ_LT906441|CRISPRCasFinder,CRT
TCACCGGCATGCATCATGTCGTCGGATCGGGC
>6.10|1343726|32|NZ_LT906441|CRISPRCasFinder,CRT
GTGGGTCTCAACAGGGTTTATCGCACGGGAAC
>6.11|1343787|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GACAGGCGCAGCAGCTTAGGAACCGACCCCGA
>6.12|1343848|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GGTGAATGTCGACGGCTGGCCCGGTGGCCCGG
>6.13|1343909|31|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GTTGACACACCCCCTCGGCAGGCGATCTGAT
>6.14|1343969|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GAGATTATGCCGCCGATTTCGACCTGGACGCG
>6.15|1344030|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
CCCGAGGATCTGGTGATTTTCACCACACCGGA
>6.16|1344091|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
TGGGACAATTGGTATGTGCCCAATGACGGCAC
>6.17|1344152|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
AGCCCTGCCAGTAGTTCGGCTGCCTCGGTGTC
>6.18|1344213|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GAATCTGGCTCATCTCGAGCGTGGTTGGAATG
>6.19|1344274|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
ATACAGGTCATTGTCAAGCTTGGTGGACACAA
>6.20|1344335|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GAACTCACTCGGAACCGCTGGAGTCTGGACGA
>6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
CTGGATGCCCAACAGGAACAGGAGGAGACGAC
>6.22|1344457|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
ATGTATTCGGCGGTCCAATGATCCTTGTATTC
>6.23|1344518|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
TCCGAGTTTCTGGTGCAGACGATGCGGTCTGG
>6.24|1344579|33|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GGCTGCGGACATGGAGGCGGGACGCCTGTACCG
>6.25|1344641|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
CGTCGGGTCGTGAACGTCGGGAAGCCGAAGGG
>6.26|1344702|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
GCACCGAACATGCGTCATCCACACGGCACCAT
>6.27|1344763|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
ATCCCGGCGTGGACCTGTCCAGCGGTCGAGGT
>6.28|1344824|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
TGAATCCGTATTCATCGAACGAGCGTGCACGA
>6.29|1344885|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
TTGCCCATGAGGCCAGCGACAACCTCACCACG
>6.30|1344946|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
TTGCTGCGTGCATGTTTTCGATATCCTTTTCT
>6.31|1345007|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR
TCCTGATTCCAGTAATGACGGATGATCTTACG
>6.32|1343236|32|NZ_LT906441|CRT
CTCACCAGGACGTCGTAGGCGATCGCCGGTCC
>6.33|1343297|34|NZ_LT906441|CRT
ACCGTGGCTGGTGGACCAGCTGCGTTCGGCGAAG

CRISPR arrays and Neighbor proteins around NZ_LT906441_6

CRISPR arrays

The CRISPR arrays of NZ_LT906441_6

>merge|NZ_LT906441|6|1343146-1345067|CRISPRCasFinder,CRT,PILER-CR
CGGCTCACCCCCGCGTAGGCGGGGAAGACTGCGAGGCGTTCCGGTGGCAGGCCGGACAGAAGGGCTCACCCCCGCGTAGGCGGGGAAGACCTCACCAGGACGTCGTAGGCGATCGCCGGTCCGGGCTCACCCCCCCGCGTAGGCGGGGAAGACCGTGGCTGGTGGACCAGCTGCGTTCGGCGAAGGGGCTCACCCCCGCGTAGGCGGGGAAGACGAATGGCTCGCCGTGGTTGTATTTTGCTTCCAGGGCTCACCCCCGCGTAGGCGGGGAAGACTTTGGTGACGATGACGCGATACGCCGACGGTGGGGCTCACCCCCGCGTAGGCGGGGAAGACGCGATCGGAAAGGCTCCGGGATCGGTGTGGTCGGGCTCACCCCCGCGTAGGCGGGGAAGACGTTGGCCACGATGACGAACTTAGCGGCGATGCGGGCTCACCCCCGCGTAGGCGGGGAAGACAAACGCGAACGCCCCATGTCGGTGATGACACCGGGCTCACCCCCGCGTAGGCGGGGAAGACTCACCGGCATGCATCATGTCGTCGGATCGGGCGGGCTCACCCCCGCGTAGGCGGGGAAGACGTGGGTCTCAACAGGGTTTATCGCACGGGAACGGGCTCACCCCCGCGTAGGCGGGGAAGACGACAGGCGCAGCAGCTTAGGAACCGACCCCGAGGGCTCACCCCCGCGTAGGCGGGGAAGACGGTGAATGTCGACGGCTGGCCCGGTGGCCCGGGGGCTCACCCCCGCGTAGGCGGGGAAGACGTTGACACACCCCCTCGGCAGGCGATCTGATGGGCTCACCCCCGCGTAGGCGGGGAAGACGAGATTATGCCGCCGATTTCGACCTGGACGCGGGGCTCACCCCCGCGTAGGCGAGGAAGACCCCGAGGATCTGGTGATTTTCACCACACCGGAGGGCTCACCCCCGCGTAGGCGGGGAAGACTGGGACAATTGGTATGTGCCCAATGACGGCACGGGCTCACCCCCGCGTAGGCGGGGAAGACAGCCCTGCCAGTAGTTCGGCTGCCTCGGTGTCGGGCTCACCCCCGCGTAGGCGGGGAAGACGAATCTGGCTCATCTCGAGCGTGGTTGGAATGGGGCTCACCCCCGCGTAGGCGGGGAAGACATACAGGTCATTGTCAAGCTTGGTGGACACAAGGGCTCACCCCCGCGTAGGCGGGGAAGACGAACTCACTCGGAACCGCTGGAGTCTGGACGAGGGCTCACCCCCGCGTAGGCGGGGAAGACCTGGATGCCCAACAGGAACAGGAGGAGACGACGGGCTCACCCCCGCGTAGGCGGGGAAGACATGTATTCGGCGGTCCAATGATCCTTGTATTCGGGCTCACCCCCGCGTAGGCGGGGAAGACTCCGAGTTTCTGGTGCAGACGATGCGGTCTGGGGGCTCACCCCCGCGTAGGCGGGGAAGACGGCTGCGGACATGGAGGCGGGACGCCTGTACCGGGGCTCACCCCCGCGTAGGCGGGGAAGACCGTCGGGTCGTGAACGTCGGGAAGCCGAAGGGGGGCTCACCCCCGCGTAGGCGGGGAAGACGCACCGAACATGCGTCATCCACACGGCACCATGGGCTCACCCCCGCGTAGGCGGGGAAGACATCCCGGCGTGGACCTGTCCAGCGGTCGAGGTGGGCTCACCCCCGCGTAGGCGGGGAAGACTGAATCCGTATTCATCGAACGAGCGTGCACGAGGGCTCACCCCCGCGTAGGCGGGGAAGACTTGCCCATGAGGCCAGCGACAACCTCACCACGGGGCTCACCCCCGCGTAGGCGGGGAAGACTTGCTGCGTGCATGTTTTCGATATCCTTTTCTGGGCTCACCCCCGCGTAGGCGGGGAAGACTCCTGATTCCAGTAATGACGGATGATCTTACGGGGCTCACCCCCGCGTAGGCGGGGAAGAC

>NZ_LT906441|6|6|1343146-1345067|CRISPRCasFinder
CGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGCGAGGCGTTCCGGTGGCAGGCCGGACAGAA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CTCACCAGGACGTCGTAGGCGATCGCCGGTCCGG
GCTCACCCCCCCGCGTAGGCGGGGAAGAC	CGTGGCTGGTGGACCAGCTGCGTTCGGCGAAG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAATGGCTCGCCGTGGTTGTATTTTGCTTCCA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTTGGTGACGATGACGCGATACGCCGACGGTG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GCGATCGGAAAGGCTCCGGGATCGGTGTGGTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GTTGGCCACGATGACGAACTTAGCGGCGATGC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	AAACGCGAACGCCCCATGTCGGTGATGACACC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCACCGGCATGCATCATGTCGTCGGATCGGGC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GTGGGTCTCAACAGGGTTTATCGCACGGGAAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GACAGGCGCAGCAGCTTAGGAACCGACCCCGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GGTGAATGTCGACGGCTGGCCCGGTGGCCCGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GTTGACACACCCCCTCGGCAGGCGATCTGAT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAGATTATGCCGCCGATTTCGACCTGGACGCG
GGGCTCACCCCCGCGTAGGCGAGGAAGAC	CCCGAGGATCTGGTGATTTTCACCACACCGGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGGGACAATTGGTATGTGCCCAATGACGGCAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	AGCCCTGCCAGTAGTTCGGCTGCCTCGGTGTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAATCTGGCTCATCTCGAGCGTGGTTGGAATG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATACAGGTCATTGTCAAGCTTGGTGGACACAA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAACTCACTCGGAACCGCTGGAGTCTGGACGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CTGGATGCCCAACAGGAACAGGAGGAGACGAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATGTATTCGGCGGTCCAATGATCCTTGTATTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCCGAGTTTCTGGTGCAGACGATGCGGTCTGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GGCTGCGGACATGGAGGCGGGACGCCTGTACCG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CGTCGGGTCGTGAACGTCGGGAAGCCGAAGGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GCACCGAACATGCGTCATCCACACGGCACCAT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATCCCGGCGTGGACCTGTCCAGCGGTCGAGGT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGAATCCGTATTCATCGAACGAGCGTGCACGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTGCCCATGAGGCCAGCGACAACCTCACCACG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTGCTGCGTGCATGTTTTCGATATCCTTTTCT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCCTGATTCCAGTAATGACGGATGATCTTACG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC

>NZ_LT906441|6|1|1343146-1345067|CRT
CGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGCGAGGCGTTCCGGTGGCAGGCCGGACAGAA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CTCACCAGGACGTCGTAGGCGATCGCCGGTCC
GGGCTCACCCCCCCGCGTAGGCGGGGAAG	ACCGTGGCTGGTGGACCAGCTGCGTTCGGCGAAG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAATGGCTCGCCGTGGTTGTATTTTGCTTCCA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTTGGTGACGATGACGCGATACGCCGACGGTG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GCGATCGGAAAGGCTCCGGGATCGGTGTGGTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GTTGGCCACGATGACGAACTTAGCGGCGATGC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	AAACGCGAACGCCCCATGTCGGTGATGACACC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCACCGGCATGCATCATGTCGTCGGATCGGGC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GTGGGTCTCAACAGGGTTTATCGCACGGGAAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GACAGGCGCAGCAGCTTAGGAACCGACCCCGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GGTGAATGTCGACGGCTGGCCCGGTGGCCCGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GTTGACACACCCCCTCGGCAGGCGATCTGAT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAGATTATGCCGCCGATTTCGACCTGGACGCG
GGGCTCACCCCCGCGTAGGCGAGGAAGAC	CCCGAGGATCTGGTGATTTTCACCACACCGGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGGGACAATTGGTATGTGCCCAATGACGGCAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	AGCCCTGCCAGTAGTTCGGCTGCCTCGGTGTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAATCTGGCTCATCTCGAGCGTGGTTGGAATG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATACAGGTCATTGTCAAGCTTGGTGGACACAA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAACTCACTCGGAACCGCTGGAGTCTGGACGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CTGGATGCCCAACAGGAACAGGAGGAGACGAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATGTATTCGGCGGTCCAATGATCCTTGTATTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCCGAGTTTCTGGTGCAGACGATGCGGTCTGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GGCTGCGGACATGGAGGCGGGACGCCTGTACCG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CGTCGGGTCGTGAACGTCGGGAAGCCGAAGGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GCACCGAACATGCGTCATCCACACGGCACCAT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATCCCGGCGTGGACCTGTCCAGCGGTCGAGGT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGAATCCGTATTCATCGAACGAGCGTGCACGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTGCCCATGAGGCCAGCGACAACCTCACCACG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTGCTGCGTGCATGTTTTCGATATCCTTTTCT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCCTGATTCCAGTAATGACGGATGATCTTACG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC

>NZ_LT906441|6|1|1343758-1345067|PILER-CR
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GACAGGCGCAGCAGCTTAGGAACCGACCCCGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GGTGAATGTCGACGGCTGGCCCGGTGGCCCGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GTTGACACACCCCCTCGGCAGGCGATCTGAT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAGATTATGCCGCCGATTTCGACCTGGACGCG
GGGCTCACCCCCGCGTAGGCGAGGAAGAC	CCCGAGGATCTGGTGATTTTCACCACACCGGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGGGACAATTGGTATGTGCCCAATGACGGCAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	AGCCCTGCCAGTAGTTCGGCTGCCTCGGTGTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAATCTGGCTCATCTCGAGCGTGGTTGGAATG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATACAGGTCATTGTCAAGCTTGGTGGACACAA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GAACTCACTCGGAACCGCTGGAGTCTGGACGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CTGGATGCCCAACAGGAACAGGAGGAGACGAC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATGTATTCGGCGGTCCAATGATCCTTGTATTC
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCCGAGTTTCTGGTGCAGACGATGCGGTCTGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GGCTGCGGACATGGAGGCGGGACGCCTGTACCG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	CGTCGGGTCGTGAACGTCGGGAAGCCGAAGGG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	GCACCGAACATGCGTCATCCACACGGCACCAT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	ATCCCGGCGTGGACCTGTCCAGCGGTCGAGGT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TGAATCCGTATTCATCGAACGAGCGTGCACGA
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTGCCCATGAGGCCAGCGACAACCTCACCACG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TTGCTGCGTGCATGTTTTCGATATCCTTTTCT
GGGCTCACCCCCGCGTAGGCGGGGAAGAC	TCCTGATTCCAGTAATGACGGATGATCTTACG
GGGCTCACCCCCGCGTAGGCGGGGAAGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_063284293.1|1333484_1334732_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|366166
NZ_LT906441.1|WP_036957341.1|1347063_1347771_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl|CDD|187776
NZ_LT906441.1|WP_065860740.1|1336447_1339048_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|226957
NZ_LT906441.1|WP_157738746.1|1340763_1340976_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_021105458.1|1345468_1346407_-|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl|CDD|274693
NZ_LT906441.1|WP_095140987.1|1341054_1341357_-|hypothetical-protein	unknown	unknown	gnl|CDD|350159
NZ_LT906441.1|WP_021105459.1|1346410_1347064_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl|CDD|378050
NZ_LT906441.1|WP_157738748.1|1341567_1341726_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_169712419.1|1358427_1359606_-|allantoate-amidohydrolase	unknown	unknown	gnl|CDD|236456
NZ_LT906441.1|WP_065860748.1|1351160_1353953_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl|CDD|182031
NZ_LT906441.1|WP_065860739.1|1335044_1335674_+|sugar-O-acetyltransferase	unknown	unknown	gnl|CDD|100047
NZ_LT906441.1|WP_065860746.1|1348888_1349506_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl|CDD|378191
NZ_LT906441.1|WP_036957345.1|1345121_1345466_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl|CDD|378244
NZ_LT906441.1|WP_065860741.1|1339054_1339891_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224059
NZ_LT906441.1|WP_036957343.1|1341789_1342029_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_065860745.1|1347767_1348892_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl|CDD|378153
NZ_LT906441.1|WP_065860749.1|1354236_1355772_-|histidine-ammonia-lyase	unknown	unknown	gnl|CDD|236484
NZ_LT906441.1|WP_065860747.1|1349505_1351164_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl|CDD|378189
NZ_LT906441.1|WP_021105452.1|1340334_1340505_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_063284291.1|1335670_1336396_+|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LT906441.1|WP_065860748.1|1351160_1353953_-|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	1.5e-62	206.5	0.0
NZ_LT906441.1|WP_036957345.1|1345121_1345466_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	2.4e-30	99.3	0.0
NZ_LT906441.1|WP_065860747.1|1349505_1351164_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	1e-104	345.9	0.4
NZ_LT906441.1|WP_021105458.1|1345468_1346407_-|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	5.2e-103	338.5	0.1
NZ_LT906441.1|WP_065860746.1|1348888_1349506_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	2.3e-27	90.7	0.0
NZ_LT906441.1|WP_065860745.1|1347767_1348892_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	1.9e-106	351.4	2.7
NZ_LT906441.1|WP_021105459.1|1346410_1347064_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	1e-54	180.6	0.0
NZ_LT906441.1|WP_036957341.1|1347063_1347771_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	2.2e-50	165.7	0.1

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_063284293.1|1333484_1334732_+|alpha/beta-fold-hydrolase	gnl|CDD|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.27772e-12
NZ_LT906441.1|WP_095140987.1|1341054_1341357_-|hypothetical-protein	gnl|CDD|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	1.24511e-23
NZ_LT906441.1|WP_065860740.1|1336447_1339048_-|ABC-transporter-permease	gnl|CDD|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	2.58902e-28
NZ_LT906441.1|WP_065860747.1|1349505_1351164_-|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl|CDD|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	2.33277e-112
NZ_LT906441.1|WP_021105458.1|1345468_1346407_-|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.70139e-119
NZ_LT906441.1|WP_065860746.1|1348888_1349506_-|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl|CDD|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	5.76453e-25
NZ_LT906441.1|WP_021105459.1|1346410_1347064_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl|CDD|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	2.97596e-61
NZ_LT906441.1|WP_065860748.1|1351160_1353953_-|CRISPR-associated-helicase/endonuclease-Cas3	gnl|CDD|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.45335e-80
NZ_LT906441.1|WP_169712419.1|1358427_1359606_-|allantoate-amidohydrolase	gnl|CDD|236456	PRK09290, PRK09290, allantoate amidohydrolase; Reviewed.	4.15699e-159
NZ_LT906441.1|WP_065860739.1|1335044_1335674_+|sugar-O-acetyltransferase	gnl|CDD|100047	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).	8.18924e-90
NZ_LT906441.1|WP_036957345.1|1345121_1345466_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl|CDD|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.38069e-39
NZ_LT906441.1|WP_065860741.1|1339054_1339891_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	9.41021e-110
NZ_LT906441.1|WP_065860745.1|1347767_1348892_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl|CDD|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	8.26481e-144
NZ_LT906441.1|WP_065860749.1|1354236_1355772_-|histidine-ammonia-lyase	gnl|CDD|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_LT906441.1|WP_036957341.1|1347063_1347771_-|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl|CDD|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.04441e-47

Protein sequences

>NZ_LT906441.1|WP_036957343.1|1341789_1342029_-|hypothetical-protein
MVRQWASEAESGFEGLQVEPFEGRAWEEVETEPLEPRTIRVSASVWRLIERDASRQGMTVSAWTRQALTREVTQTLKAS
>NZ_LT906441.1|WP_157738748.1|1341567_1341726_+|hypothetical-protein
MTSSRLATTAGRNHAQTHISADDRAALDALKVTYMPEALLTPSQRALRDQLT
>NZ_LT906441.1|WP_095140987.1|1341054_1341357_-|hypothetical-protein
MRARLPRLRGVVVGPLASGDVFVPGDRLDAMLTDCPDAVAVDMESTAIAQVCRSFDVGFVSTRGISDLCGPAANEEHPERVEGASERAASIVVELLETES
>NZ_LT906441.1|WP_157738746.1|1340763_1340976_+|hypothetical-protein
MPRPPSRANGHWISWFSAPQGMELQKSDAGAPLMRGDEVVGFLGIAGADGGDAEDIANVHQWVKQLTQQG
>NZ_LT906441.1|WP_021105452.1|1340334_1340505_+|hypothetical-protein
MRKFLPVVGALSLPLGGGVAQAATGGESTTNPGIVALSAPDGEHRCSAVLVAPNGR
>NZ_LT906441.1|WP_065860741.1|1339054_1339891_-|ABC-transporter-ATP-binding-protein
MAPTAAAADELVKTYGTGDAVVKALDGVSVTVEVGALTAVMGPSGSGKSTLMHCMAGLDRPTSGRAFIGQTDVATLTDRKLTLLRRERVGFIFQQFNLVPTLTARENILLPLAIAGRKPNPQWWDTVIDVVGLADRLDHKPSELSGGQQQRVACARALVGRPEIIFADEPTGNLDSMSATEVLGFLRRSVDEFGQTIVMVTHDPVSASYADRALFLADGRIVDDICHPTHDAVLTTMSRLDPRRHPSIDSGPDDGPSPHRAKTTGGEHVPAARRVERP
>NZ_LT906441.1|WP_065860740.1|1336447_1339048_-|ABC-transporter-permease
MWKATFTSLWSRKLRLFMSTLAIVFGVAFVSGSFVFGDMLRSTFNSIVSGSVSDVEVSKNTEDAVQGDATKPYPLTPAVVDRIRTIDGVKDAQGTVTETGTVLIDRDGKAITSFGPPQLGFSWQTTPALGGQQGVHVVSGHEPRADDEVVVDPQTLDKSGHHVGDRVKVITSRAGTVQAKLVGTATVGQSGSAGASYVFFTTHRAQQLFLKGHDAFTGVATVVEPGADRATVAKAVQKVLPKGYQAKDGKVVADEQMSVIGKALGFVDIFLLVFAGISLLVASFLIVNTFTILVAQRSSELALYRAMGASRGQIRATVLVEALVVGAVGSVLGLFGGLGLAVAIKAIMAATGWDIGQTTLTLGVKAIVASLVTGILVTLVAALLPAARATRISPVQAMTSARTESEVGLGKRAVIGSVMAAVGVVGIVLGVLDVVGKPVAWAGAGMALTMIGVALASPLLGRPVIWIVGKVYRATFGEVGKLAELNSIRQPRRTAATASALMIGLTLVSLMAVFGASSTRSVTSQVTDTLRGDFMVGRQGFEGFPNQVRTKVAAVPQVKDVHAMKMAQMLEIPAGHTTPPKEYFTDATGRHMRGIAGMEATSLDKMSPQKVTKGRMFRTDGEMIVDEKAAEKNHLKVGSSYRLWSVDAQRPMTLTVVGIYTTGKGQPIATMWVSTSTLTSAGLGDKDTFLSIYLKPGTDHEQAHRALDAALADMPLVSVMDVGQYTDQILVNVNRTMALLYALLGLSIVIAVLGIVNTLGLSIIERTRELGLLRAIALTRPQVRRMITLESVVIALLGAVVGVGLGTVFGMVLQRLLADQGIDKLSIPWLQLVAFLVAAALVGVLAALWPAHRAARTNILKAIATE
>NZ_LT906441.1|WP_063284291.1|1335670_1336396_+|hypothetical-protein
MTMNDIPDLPVNWCDPDSVGAELPETDDVEADPQSVQIPPAESFEVLRRASEEELRAQERGEQIDPLESGRAAIAIALTPLCQLEGAIMLGVSLLDAVVKRVEQVDDDTVEVYLPDWLFDHEGLTSDEVPGLLVERVRRDMADPVVVSTMGEEAVEQLRSGLSAILAAQQHDAAEFSRHVNPDVDPEWIIDGCQEICVALAAHAATIGWQRPEVDVSNVFATLDMADDPDRVRTLLRQARR
>NZ_LT906441.1|WP_065860739.1|1335044_1335674_+|sugar-O-acetyltransferase
MPSCPPDTVDPMTDHFAGDPRTNRERMLAGDLYIADDPESSRIAERGARLADAYYRAFLNDPDSAIPLLAELLGELGEDAVIKPPLYVDYGENIHFGARSFANYNLTALDVAEIRIGTDCQIGPNVQLLTPTHPIDPDLRRDRLEAAKPITIGNNVWLGGGAIVCPGVTIGEDSVIGAGAVVTKDIPAGSIAVGNPARVIGSVYDRKGE
>NZ_LT906441.1|WP_063284293.1|1333484_1334732_+|alpha/beta-fold-hydrolase
MTWNRNIPGLLTDDIRLRVPLDHNNPEDLRTVEIYARLVAAPDGTDKPYLVFLQGGPGCESPRPTLRDPGFPGWLARALQDYQLVLLDQRGTGLSSPVSEPVGDPASQAEYLTHLRADEIVEDCEDIRRHLGVQKWAVLGQSFGGFTLLRYLSTYPESLSAGYFTGGLSAVGRSADEVYTACYDQLRAKSLEYYKRFPEDRVRFAELMALAEKGEITIPNGDIVTPSRLRSLGHLLGASGGAEKLHYLLEYPHTSRSFRHDLAGLLPFGGRNPLYAVIHESSYADGVVTDWSAARMLPEDFQQDPTLLTGEHVMPEWFDTDQELRPWKEVANLIANHPWPKLYDADALRAAEVPCAAAVYHDDAYVPRQFSVETAALLPQMHAWVTTEYEHNGSNASGGAVLDRLIKLVKGELVR
>NZ_LT906441.1|WP_036957345.1|1345121_1345466_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MVVLVLTACPAGLRGHLTRWLLEISPGVFVGHVPARIRDALWSRVVEMCHDGRAILVYSVRGEQHFEFRVHRHDWDVVDFDGLKLMQRPNNRAHTSTLRPGWSSAARRRRTTKR
>NZ_LT906441.1|WP_021105458.1|1345468_1346407_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MGKSIPGARPAEVQELARAQDRLSFIYMEHCIVNRDSNAITASNQQGTVHVPASMIGALLLGPGTNVTHQAMVLLAESGATTLWVGEQGVRYYAHGRPLARTTRLLQLQAEAVTDRKKRLAVARRMYEMRFPDDVATGLTLQELRGHEGARVRQAYRDAAVKFGVDWDKRSYKVEDFESSDPANQALTAATTCLYGVVHSVIAALGLSPGLGFVHTGHDRSLVYDVADLYKTSLAVPVAFECAANGDVDDIPGATRRAMRDAIHESKLLSRCVEDIHTLLDAPGDPDDGYGWDVVDLWDDRVGTVASGRSWA
>NZ_LT906441.1|WP_021105459.1|1346410_1347064_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MFLTQFDINVARRDAMRLLASPERLHAAVLSAFPPGQSTSDDTRTLWRLDRGPAKHDARLMIVSPLQPDLTTLNEQAGWSTGVPGRSADYDPFLRGLQPGSTWQFRCTVNPTTAIRTASGSRGKRVAEVTAEQQLAWFIGRAERHGFAVPVKDQARVTRREVLRFRRRGSIVTLAVTQVDGVIHVADADAARVALTCGIGPAKGYGCGLMTLAPVVS
>NZ_LT906441.1|WP_036957341.1|1347063_1347771_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSVLLLRLAGPLQSWGDSSRFTTRATRREPTKSGVIGLLAAAQGRRRTDSIEDLLTLRFGVRTDQPGSVVRDFQTAMDWAHPKKDGSVNAMPLSNRYYLADAVFIAAVEGDPSLLEALDEAINDPQFPLYLGRRSCPTEGQVSLGIREGELMTVLEAEPWHGKPWHQRRLGRSVRLPIAYDAAPGQPGDTVRDIPLSFNPERREYGWRDVATTTIIVDNPNGNDEPDWFAGLEGA
>NZ_LT906441.1|WP_065860745.1|1347767_1348892_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSSYYVDIHVIQSVPPSNVNRDDTGSPKSALYGGVRRARVSSQAWKKAVRTSFKEFLPADQTGSRTLRVVELLMNRLTAAPYELSTENAQQRALAVVKALGLKTKKPRKKDESGAEGVERTQYLVFYSNQQLDRLAELAATTDGKISATDAKKVADSDHGIEVALFGRMVADSKDLNVDSAVQVAHALSTHAVEIESDYFTAVDDYKLDEDDAGAGMIGTVEFTSETLYRFATVAVSTLENNLGDVDLTAQAASAFVRGFLMSMPTGKQNTFANNTIPDAVVVQIRKGRSASFIGAFENAVKPADGGYVEPSCRALSDYAHECEQAFLGEPVASFVTRIGARTEAVASMGTEMRVDDLVSSVREQVASLLRDES
>NZ_LT906441.1|WP_065860746.1|1348888_1349506_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MPEPWNDVTKATLDVVNHLQRGYLEAPRDAWSVRTMAALRHADAATPGADPEVWEVTLRHLPDDLLGRGAAPATAAERAVHAAVVLYAIHQQSRSEPMHVPGIGLGQAVRTLSARRSGGPEWDPGTISRFQHLCRAQQWGIRIENLRGLIAFMRSEGVPLDHGRLAADLWRIQTSASDDVLLDWGRQLHRIPPTDPTTTDQGEAQ
>NZ_LT906441.1|WP_065860747.1|1349505_1351164_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MTSAFNLVDEPWISVRTPDNDVTEVSIRDAFHRGTEFRGLAGEIPTQEAAILRLLLAIAIRATARFRSDDEKVDDWGEWWQSGLPLDEIDTYLDRWHDKFNLVDNKTPFMQVADLRTAKGGYSGLTKIISEVPANDRFFTTRDGAGTSSLDFAEAARWLIHAHAFDVSGIKSGAIGDPRVKGGRGYPIGTGISGPMGIVIVEGASLAETLLLNLFLENDPQDDLPVWERPPQVAAPDREHPVPTGCADLFTWQSRRARLITDGNRVVDVLLCNGDKVEWKYLLHNDSMTAWRFSAPQTKAAGETVYMPRSHDSTKAMWRGLEPLLVREPAPDDRRRRKAGEPDDLWLRPEIFEQLATLSSDGALPGDHVTRIRTIGMEYGSQSSMVTTTIDDAMPASVAVITDEQLGRLAVDSARTADSLVFALQNLATDLAAATGSESEGIRPRASEMGYAALDPAYREWFSLLSTATDIGAATLSWRRRARQVMHTVGEQLCRDAGPAALTGRMVPVPNTAREDLMDLARAWQRFAARLRTSAPLPEDPQRETKTSRKEQ
>NZ_LT906441.1|WP_065860748.1|1351160_1353953_-|CRISPR-associated-helicase/endonuclease-Cas3
MLNTWSPPAQSCWGKTNEAGDWLPVVQHLEDAAGVMAEIWSLQPRSIRSLLADSLGGERAAQTFECFLAGIHDVGKVSADFAHKARFPRTNGTSTSYLCDQMERQGFVIEKPDASIPHGALGQAHVTSWLVNRYPDAPKARRHARNIASIIGGHHGSNPTAADMEKFKLSLDREDRLWKTTRDEILDAIAAHTGAEKFLPSWMSTPIPIQTQVISEALVIVADWIASSESLFPYDLTTPTPDRVRRAIARLQLPRPWQPYPCPNSVNELFHTSFPSLVHGEPNAMQRAAVEAASSMVEPGLLIIEAPMGQGKTEAALMCAHVLADKFGLGGIFFGLPTMATSNPMFGRVREWLDAVPAEDQSSITLAHSKAGLNDDYQQLMPWNASMAVYDEGTSQREASAIVHEWFLGRKRAILADHVIGTIDQALFTGLKAKHVVLRHLGLASKVVIIDEVHAADVYMREYLKVVLEWLGVYRAPVILMSATLPPAQRHELALAYAKGRNGRDANVALTTTDEYPLMTSVSDGIAQRGTSASATARQVTLQFMDDSLDELIELIKDRMSDGGCVGIIRDTVARAQETFDILNSQLNCEVMLVHSRFLAPQRARREADLVRRLGRSGGDRPNRIVVVGTQVLEQSLDVDFDLLISDIAPMDLLLQRIGRLHRHDRQRPLPMREATCLVTGVDAWQEDGPQFSQGVDLVYEPSALLCTAAILQALDDGNVTLPHDIPRLVRTAYDESFTWPEPWLSRGEEATLESRSLHKAAMSRAMTYRLSDPFSASSLMKGLTDMKTVDPENTRGQASVRDSEDSIEVIVVQQNESGGYRLMDGIGKFSGANLPLFGAPDGDLARAVASCTVTLPRSLSSPWDIDQTIAELENAPIDLSSWQSSPWLRGQLVLVLDSDGNTTLLDRPIHYDPHRGLTVEPRPQNGVPA
>NZ_LT906441.1|WP_065860749.1|1354236_1355772_-|histidine-ammonia-lyase
MNPATIDVGAPLTPHDIIAVARSGAQVTVGDDAMERVKRASDLVESLADDPQPHYGISTGFGALASTRVPRDHRVALQHSLIRSHAASTGPRVETEVIRAMMTLRLKTMASGHTGVRPEVVTAYADLLNSGLVPVVGEYGSLGCSGDLAPLAHCALVLTGEGTVLTPDGGEVDAATGLAQAGLTPIALREKEGLALINGTDGMLGQLIMALADLDVLVPTADLATAMTVQALCGIDRVFAPDLQALRPHPGQGVSAANILALLEGSDLIQAGREGAAKHVQDAYSLRCAPQVHGAVRDTMAHALQVAKAELASAVDNPVITDDMRVESNGNFHGAPVAYVLDFLAIAAADLASMSERRTDRMLDPARNRDLHPFLADDPGVDSGHMIAQYTQAGIVSEMKRLAVPASVDSIPTSAMQEDHVSMGWSAARKLRRGIDGMGAVIGIEILTAARAIQMRGLEPSKPVADVIARMRQTIPGPGPDRFLAPEIDEAHRLVTSGELLEVVRQQVEVS
>NZ_LT906441.1|WP_169712419.1|1358427_1359606_-|allantoate-amidohydrolase
MLDEIAGIGRNEDGSYSRFCFRPDEVALREWFVTKATELALTIVTDMNANIWAWWGMPGPEAVLTGSHLDSVPGGGAYDGPLGVVSSLVAVAKMKEAGVEPSKPFAVVAMADEEGARFGMPCLGSRLASGKLSKDDARRLVARDGQSLPDAWREAGLDPDLIEPDDVLLDASCFIELHVEQGRGLADLDHPVAIATAVRPHGRWRAEFTGQGNHAGTTLIPDRHDPVIPVAETILASREAAEREGCVTTVGRINVEPGGTNVIASATTMWLDCRAEDPGTVTKVVEEIQKISAEAADKQGCQVVWARESWTDRTAFDDDLRHRMLQVLGEETPQLSTGAGHDAATLAATLPTGMLFVRNPTGASHCPAESASDEDCEAGAEALRAVLEELVK

Crispr_ID: NZ_LT906441_7

• CRISPR_ID: NZ_LT906441_7
• CRISPR_location: 1372883-1372963
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT906441_7

Consensus_repeat	Method
GATGGCGGTCACATGTGCGGTTGGC	CRISPRCasFinder

spacers of NZ_LT906441_7

>7.1|1372908|31|NZ_LT906441|CRISPRCasFinder
GCACGTGGTTCCGGATTTGCGATGCCATGTA

CRISPR arrays and Neighbor proteins around NZ_LT906441_7

CRISPR arrays

The CRISPR arrays of NZ_LT906441_7

>merge|NZ_LT906441|7|1372883-1372963|CRISPRCasFinder
GATGGCGGTCACATGTGCGGTTGGCGCACGTGGTTCCGGATTTGCGATGCCATGTAGATGGCGGTCACATGTGCGGTTGGC

>NZ_LT906441|7|7|1372883-1372963|CRISPRCasFinder
GATGGCGGTCACATGTGCGGTTGGC	GCACGTGGTTCCGGATTTGCGATGCCATGTA
GATGGCGGTCACATGTGCGGTTGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_021103174.1|1365357_1366185_-|HAD-IIB-family-hydrolase	unknown	unknown	gnl|CDD|369792
NZ_LT906441.1|WP_095141089.1|1369455_1370424_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|184242
NZ_LT906441.1|WP_021103184.1|1374690_1375695_-|ketoacyl-ACP-synthase-III	unknown	unknown	gnl|CDD|236475
NZ_LT906441.1|WP_021103183.1|1374349_1374595_-|acyl-carrier-protein	unknown	unknown	gnl|CDD|179197
NZ_LT906441.1|WP_155942601.1|1363571_1363700_-|toxin-antitoxin-system-toxin-subunit	unknown	unknown	unknown
NZ_LT906441.1|WP_036957352.1|1381382_1381844_+|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl|CDD|370480
NZ_LT906441.1|WP_021103189.1|1379689_1380094_+|DUF3052-domain-containing-protein	unknown	unknown	gnl|CDD|378615
NZ_LT906441.1|WP_065860893.1|1377701_1378043_-|dinitrogenase-iron-molybdenum-cofactor	unknown	unknown	gnl|CDD|238431
NZ_LT906441.1|WP_065860892.1|1373046_1374321_-|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	unknown	unknown	gnl|CDD|238430
NZ_LT906441.1|WP_021105473.1|1361948_1363298_+|IS256-family-transposase	unknown	unknown	gnl|CDD|307151
NZ_LT906441.1|WP_065860909.1|1376778_1377702_-|2-dehydropantoate-2-reductase	unknown	unknown	gnl|CDD|235821
NZ_LT906441.1|WP_065860891.1|1370426_1371383_+|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|184242
NZ_LT906441.1|WP_095140990.1|1378053_1379337_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379258
NZ_LT906441.1|WP_023035471.1|1371398_1372106_+|YggS-family-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|143483
NZ_LT906441.1|WP_021103175.1|1366184_1367027_-|hypothetical-protein	unknown	unknown	gnl|CDD|227430
NZ_LT906441.1|WP_065860894.1|1380251_1381265_+|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl|CDD|381376
NZ_LT906441.1|WP_023035470.1|1372326_1372830_+|DUF3145-family-protein	unknown	unknown	gnl|CDD|378644
NZ_LT906441.1|WP_095140989.1|1375691_1376633_-|ACP-S-malonyltransferase	unknown	unknown	gnl|CDD|223408
NZ_LT906441.1|WP_065860890.1|1368376_1369423_+|DUF58-domain-containing-protein	unknown	unknown	gnl|CDD|224635
NZ_LT906441.1|WP_081672418.1|1367337_1368369_+|MoxR-family-ATPase	unknown	unknown	gnl|CDD|223786

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_021103174.1|1365357_1366185_-|HAD-IIB-family-hydrolase	gnl|CDD|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	9.10234e-43
NZ_LT906441.1|WP_095141089.1|1369455_1370424_+|VWA-domain-containing-protein	gnl|CDD|184242	PRK13685, PRK13685, hypothetical protein; Provisional.	8.70367e-66
NZ_LT906441.1|WP_021103184.1|1374690_1375695_-|ketoacyl-ACP-synthase-III	gnl|CDD|236475	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3.	2.06766e-135
NZ_LT906441.1|WP_021103183.1|1374349_1374595_-|acyl-carrier-protein	gnl|CDD|179197	PRK00982, acpP, acyl carrier protein; Provisional.	7.75969e-28
NZ_LT906441.1|WP_036957352.1|1381382_1381844_+|GatB/YqeY-domain-containing-protein	gnl|CDD|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	5.98959e-35
NZ_LT906441.1|WP_021103189.1|1379689_1380094_+|DUF3052-domain-containing-protein	gnl|CDD|378615	pfam11253, DUF3052, Protein of unknown function (DUF3052). This family of proteins with unknown function appears to be restricted to Actinobacteria.	2.57014e-48
NZ_LT906441.1|WP_065860893.1|1377701_1378043_-|dinitrogenase-iron-molybdenum-cofactor	gnl|CDD|238431	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).	3.25522e-07
NZ_LT906441.1|WP_065860892.1|1373046_1374321_-|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein	gnl|CDD|238430	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.	0
NZ_LT906441.1|WP_021105473.1|1361948_1363298_+|IS256-family-transposase	gnl|CDD|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	2.23372e-125
NZ_LT906441.1|WP_065860909.1|1376778_1377702_-|2-dehydropantoate-2-reductase	gnl|CDD|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	2.89882e-78
NZ_LT906441.1|WP_065860891.1|1370426_1371383_+|VWA-domain-containing-protein	gnl|CDD|184242	PRK13685, PRK13685, hypothetical protein; Provisional.	6.38979e-76
NZ_LT906441.1|WP_095140990.1|1378053_1379337_-|helix-turn-helix-domain-containing-protein	gnl|CDD|379258	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain. This helix-turn-helix domain is often found at the C-terminus of PucR-like transcriptional regulators such as Bacillus subtilis pucR and is likely to be DNA-binding.	2.44044e-17
NZ_LT906441.1|WP_023035471.1|1371398_1372106_+|YggS-family-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|143483	cd00635, PLPDE_III_YBL036c_like, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.	5.11691e-111
NZ_LT906441.1|WP_021103175.1|1366184_1367027_-|hypothetical-protein	gnl|CDD|227430	COG5099, COG5099, RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis].	2.49062e-05
NZ_LT906441.1|WP_065860894.1|1380251_1381265_+|L-glyceraldehyde-3-phosphate-reductase	gnl|CDD|381376	cd19150, AKR_AKR14A1, Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ/AKR14A1) and similar proteins. Escherichia coli L-glyceraldehyde 3-phosphate reductase (GPR/YghZ), also called GAP reductase, is a founding member of aldo-keto reductase family 14 member A1 (AKR14A1). It catalyzes the stereospecific, NADPH-dependent reduction of L-glyceraldehyde 3-phosphate (L-GAP). It is also involved in the stress response as a methylglyoxal reductase which converts the toxic metabolite methylglyoxal to acetol in vitro and in vivo.	0
NZ_LT906441.1|WP_023035470.1|1372326_1372830_+|DUF3145-family-protein	gnl|CDD|378644	pfam11343, DUF3145, Protein of unknown function (DUF3145). This family of proteins with unknown function appear to be restricted to Actinobacteria.	4.96326e-54
NZ_LT906441.1|WP_095140989.1|1375691_1376633_-|ACP-S-malonyltransferase	gnl|CDD|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	1.04406e-62
NZ_LT906441.1|WP_065860890.1|1368376_1369423_+|DUF58-domain-containing-protein	gnl|CDD|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	7.66067e-25
NZ_LT906441.1|WP_081672418.1|1367337_1368369_+|MoxR-family-ATPase	gnl|CDD|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.09561e-81

Protein sequences

>NZ_LT906441.1|WP_023035470.1|1372326_1372830_+|DUF3145-family-protein
MSSSHLHAEGMIFIHSAPTALRDHIEWMVNAAVVAPMWQWRPQPVCPGSWRAEVAWSGDMQQVVGLVSTLCAWRKLRFEVTVESGAPTQRWSYTPDLGVFHCATDDAGSIRVDEVRLRTAVMESRRMGTDLATQISDLLGEPWDVELEAYRAGDPTIDVSWFAAQVG
>NZ_LT906441.1|WP_023035471.1|1371398_1372106_+|YggS-family-pyridoxal-phosphate-dependent-enzyme
MTIAENLEMIHSRIAQACRQVDRDPASVRLLPVSKTKPASDVVEAAQAGVRRFGENRVQEAMGKWQELSDDHPQIEWAIIGHLQTNKARDVARFASEFQALDSLRLARELDKRLHAQGRQLDVLVEVNSSDEPQKSGVTPSEAVDFARQLSAFDALRVKGLMTVALHSDDESQVAACFQRMRVVQEQLRNEASEVSSWNDLSMGMSGDFEIAIAHGATTVRVGQAIFGSRPPMGR
>NZ_LT906441.1|WP_065860891.1|1370426_1371383_+|VWA-domain-containing-protein
MAMLIHFAHPGRLWWLIVPVLLFLAWLVLDIRRRSVRSPDDRLRRVLPHQRGWKRWLAVMSSVASTACLVLAFAQPQSYRSVPRDRATIAVAIDVSRSMEANDVEPNRLTAAQDAAKEFVGSLPPRFNVALVRFAGTAQVVVPPTTDRGTVDRAIDNLKVLPSTAIGEGIYTSLDAIKLAPPDPRHPKEVAPAAIVLLSDGSTNMGRPSLQAGRDSGGKGVPVYTIAYGTARGYLVEDGVRQRVPVNRSELAAVAKASGGEKFSAQSLGELKKVYREISHSVGSDKVYAEITDVYVGISVILALVAAGGAVMLAARWP
>NZ_LT906441.1|WP_095141089.1|1369455_1370424_+|VWA-domain-containing-protein
MPSMVLGLPELRSPHHLWALLAVPALLTFYLVALRRSASSPVRTPNAGMVAAVMRGQPQWKRHFSVAMSLLALEAAVVAWCRPLGIEKVPRERATIVVAIDASQSMGAKDVDPTRMDAAKQAATRFIDTMPEGFNVSVVRVSGSPTVLVPPSKDRAVVRRAIDNIEPSDGTALGDTIIESMDSIRQAPKSEDGTPAPAAIVLLSDGGNNHGPDPVPLATKAGRAKVPIYTIAFGTQTGYVDLDGRRERVAPDTQVMKQIASSSRGQSWEADSAPRLDKVYQDVHSSVGYEDVKKEVTATWAFYAMGFAVLAGVGVLTMAVRR
>NZ_LT906441.1|WP_065860890.1|1368376_1369423_+|DUF58-domain-containing-protein
MATTNRRRTSTTDGVVDTIVHQPTGASVALHQLAPEAALQRLELTIVRRLEGFLHGDHRGLIPAVGTEASDARPYQPGLDDVRRMDWAVTARTTEPHVRDTIADRELEVWALLDATASMNWGTRTMTKRDLGIAGIATMGFLTQKMGDRFGGVIMRHDSVRRFPARSGRTALYALLRSMLTEPIVPDSSSPSMPLSESIEHVLRVERRRGMRIVVSDFVTPGDLELDPAVPTEWERALRRLASRNQVVCMEIVDPAETNFPDMGEVLIADPETSAAQLVDTSDEQARVRMNAAAAAQRRRVAAAIRRSGAAHVQLRTDSDWVRDIARFVIGYRKVAPVLHNTGQVMNP
>NZ_LT906441.1|WP_081672418.1|1367337_1368369_+|MoxR-family-ATPase
MSNAEAARLLGEAIGQVQRVIVGQEHMVEQLMVGVLAKGHILLEGVPGVAKTLAVRSFATVLGGDFARVQFTPDLVPSDIIGTRIYSASREQFDIELGPVFVNFVLADEINRAPAKVQSAMLELMAEKQVSIAGRTFPARKPFSVIATQNPVESEGVYPLPEAQRDRFLLKVDVPYPRGNEEFEILRRMSVKAPQPTQVLTTDMIIELQDMASDVFVHNLVAEYIVRLVLATRSPGDFDMPDLEPVIQIGCSPRATLGLVAASRALALIHGRDYVLPTDVQAIAKDVMAHRIMLSFDAVADNIAPAQVIDRILAMVPPPTPVWNKQQRETSHQQHRYDASYDN
>NZ_LT906441.1|WP_021103175.1|1366184_1367027_-|hypothetical-protein
MGEFWLDARAADSAAGVAYLAHRSTQRVILVMLCAGAASDGGARDRLAGQVNLLPARMVLARGGQGQDSGRLGHLFQEVADCPAPVDQTPPAPWVALVDDETPYALQEARRILGEVELAHTSQLGRVAGPSFQVHWAKDRAPGTSRSWPLPWPGRHDQAGWSTTVVAWLLTLVIAGLGLLIAVLLFQNVPPTPPPPPVPTSNSSSSSTSSPSSSQQSPSSGGSGSSSPSPQPSDAQSSRPESSSSPSEGSASPTPTSSGEPHDGRPSSSGSPDEHPNGRL
>NZ_LT906441.1|WP_021103174.1|1365357_1366185_-|HAD-IIB-family-hydrolase
MTPLTLVATDLDHTFLGADQRPSELNTHSMFAAADHGTAVVFATGRPLRWLDLLEVFTDVNPTVIASNGAVTYDLRNHRVISDTPFPVDLITDVVNDISSELPEAKFSLEEARSCYVEPGFDRVDHGRPVTHRGPIREFLTPDSRPVKMLVRAFGIPTEELFEIVDGLVDGRVSTTFSVQLDDGLIELAPIGVSKGAALSATAEQLGVDLADAAAFGDMPNDLSMLRLVGHPFVVSNAHRRVLQEGFPVIGHHDTSAVGHAILDLLDGRQPATVS
>NZ_LT906441.1|WP_155942601.1|1363571_1363700_-|toxin-antitoxin-system-toxin-subunit
MGFDSSGRPIEMVFVRGTGRSVLVIHANWLTKGFLAQMRRLR
>NZ_LT906441.1|WP_021105473.1|1361948_1363298_+|IS256-family-transposase
MTSVSPKKNHDPARVNEISEKLMENPELASLISELSTSADDASELVKGLLQASINAGLQAEMDAHLGYSHSDRKTKAQVETAQANNHRNGSYTKTVNSGYGAVEVTVPRDRAGTFTPRMVPKGARRLTELDDMIVSLYAGGMTVRDIQHHLATTLGVDMSPDTISTITDAVLDEVMIWQNRQLDEFYPVIFLDALRVKIRDGHRVVNKACYMAVGVDMDGIKHILGLWIADNEGAAFWASVCADLANRGVQDVFIVCCDGLKGLPEAVEATWPNSMVQTCIVHLIRAANRWVSYQDRKPVSRALREVYTAANEDTARAALDAFEASELGRKYPQLVKVWRDAWERFVPFLQFPPAARRVLYTTNSIESLNAELRKATRNRGQFPNDTAALKTLWLMICNIEDKRAAQRAKKAKRDVECNGYIEGAKATGWKQAINQLAVAYLDRFADYL
>NZ_LT906441.1|WP_065860892.1|1373046_1374321_-|beta-ketoacyl-[acyl-carrier-protein]-synthase-family-protein
MTDVVITGFGATTPLGADAPSTWQGLVEGRNGVHTLDHEWAENLPVTFAAEVVDEPGNHIPRPRARRLDRSSQLALVAAWEAWADAGLSLPHDEDGNPVDNGVDPDRLIVSVATGIGGLHSLLGQWDVQKDKGFRRVSPFTIPMLMANAPAANIGLEFHATGGIHTPVSACASSSEAISLGLDQIRLGRADIVVAGGTEAVIHPLPLAAFSQMKALSSRNDDPEHASRPWDVDRNGFVLGEGAAILVLETLEHAQARGATIYGTLAGSGISADAHDIVQPDPSGYGQASAMRKALASADLKPSDIKHINAHATSTPQGDTAEAMSIREALDTAAEDVLVTGTKSMTGHLLGGAGALESFATVMALLRHKVPGTINTEHLEEGLPVRIATETTDLADGDLAALNNSFGFGGHNVTLAFTNQHATR
>NZ_LT906441.1|WP_021103183.1|1374349_1374595_-|acyl-carrier-protein
MADKAQILADLADIVNDITGVEQSEVTEEKAFTDDLDVDSLSMVEIIYSCEEKFGVEIPDEESKNLRTVGDAVKYIEDHQS
>NZ_LT906441.1|WP_021103184.1|1374690_1375695_-|ketoacyl-ACP-synthase-III
MNNPTLSASTGASYARILGTGSVRGDRVVTNEEMCTMIDSTPEWIEQRTGIRERRWATPEQTVIAMASQAARQAIEDAGLTPDQIDTVIIASVSHHRPSPSLATYVAREIGATSAAALDINAACAGFCYATTLSESLIRSGASTHVVSIGVERLSDMINMKDRSTAFLFSDGAGAAVFGPSEEPAIAPTQWGSRADQVEVIEIEDWTQAASHPDVNYPLIAMEGRKVFKWALTEVAAKAKEAIAAAGITADDLDVFIPHQANDRIVDVIVRHLGLPDSVTVCHDIAGMGNTSAASIPIAMDRMRRRGDAHSGDLALIIGFGAGLVYAGQVVRLP
>NZ_LT906441.1|WP_095140989.1|1375691_1376633_-|ACP-S-malonyltransferase
MLALVSPGQGAQKPGFLGPWLEDASFAAHLNWLSAVANMDLAEHGTVSDEATIKDTAVAQPLLVAAALATGWAVKDDFFPQADMIAGHSVGEIAAGAGAGAFSPEAAMVLVRERGRAMAEAAAVTKTSMTAVIGGQPDEVLAAIEKHGLTPANHNGKGQIVAAGTVEQLEAFAAEPPARTRLFPLSVAGAFHSVHMEPAVDHLRSVAAAMPTSSSLSTTLLSDLDGAVVTDGRDFADRLVAQVAQPVRWDLVMQTMASRGITGMIELAPAGTLTGIAKRNLKGVELFNLNTPDQLEDARAFAAAHSHKTPETA
>NZ_LT906441.1|WP_065860909.1|1376778_1377702_-|2-dehydropantoate-2-reductase
MDRLRVAVVGAGAIGTFYGMMLEQAGADVSFVARGATLAAIRRDGLRITGKRTRTIHPLVTDDPAQIDVVDAVLVCTKTFQVAPALEDYSSSLIGPDTVVVTTQNGVATPQVVADIVGRRRTCPGVCREWVKIVEPGVVDDMGGPASIHIGMLDGSQNPIVDEIRSRFESVGVTCPPVADIITELWFKAVNVCAQGAIGAALEATLGELLTCHRDLFVRCVREWIAVGEAHGADFSPDVLAAVFAYFESQEGHLTTSFQRDITAGRASELEAQVGALPGLGDEVGVDTPLNDAFAAVLRAKAARAGH
>NZ_LT906441.1|WP_065860893.1|1377701_1378043_-|dinitrogenase-iron-molybdenum-cofactor
MNFMIPVHDDGSVEPRFGRAPKVAVATVDDSGSITGWQTFDVQWDRLHDEGPEGSHHARIVRFLREHEVAAVVSTHIGAGMQHTIMKMGLAMLPATDPDARASVAAVAEQVAR
>NZ_LT906441.1|WP_095140990.1|1378053_1379337_-|helix-turn-helix-domain-containing-protein
MARSSDTEKRSRPATTGRDIVPSDRTRKAITKRLASHTSAMTTATLATMSSRHSWFRRLSAEERSWISIVARSGIDGFVTWFSDDQTKPYRPTNIFGVAPASTTRKISLRQTVDLVRTTIDVVEDQIRTTMSRSDRQVLLNAIVHYSREVAFAAAEVYARAAERRGTWDERLESLVIDAVVRSEPDDELISRASTLGWRSGLNLCVVVGRGAGSGVGVRALRRAGEQKGLTILAATQAHRLVAVVAGEQIVDDASAVKVVAALADHFSEGPIVVGPVVDELTNAPTSARAAMAGARVASGWPEGPRVLSSTDLLPERALTGDEQAIAWLVEQIYEPLSRSTGNLMETCVAFLDHGGSVEGTGRALYIHPNTVRYRLKKIQETTGYSPNDPREAYVMRLAITFGRLHTTDQNDQHRPDLPRFPFPALG
>NZ_LT906441.1|WP_021103189.1|1379689_1380094_+|DUF3052-domain-containing-protein
MSNGTGFDRIGFEAGQIVQELGWDEDVDEELRQLLMDTVDGDLVEDSLDAVDAVWLWLRSDDDEVADALVDAMRDLSDDGFIVLVTPKVGRPGAIDASDLNEGAETAGMTLTSTHNLDSDWQAHKVVRPRGVRR
>NZ_LT906441.1|WP_065860894.1|1380251_1381265_+|L-glyceraldehyde-3-phosphate-reductase
MAVSSYVAAENRYDDMQYRRCGTSGLMLPAVSLGLWHNFGDLHPGGTQRAVLRRAFDRGVTHFDLANNYGPPYGQAETNFGRIFASDLKPHRDELIISTKAGYDMWPGPYGQGGGSRKYLIASCDQSLKRMGLDYVDIFYSHRFDPDTPLEETMGALDHIVRSGRALYIGISSYDHEQTVRAAAIARELGTPLLIHQPRYNMFDRWIEDDLLDTCEQEGMGVICFSPLAQGLLTTRYLSGIPRNSRVGMGSRHLRPENLDEQTMDTVRALNEIAMDRDQSLAQLALSWILREERITSVLVGASNVTQLDADIDALSGNQLTDDDLIRIETVLAEHQL
>NZ_LT906441.1|WP_036957352.1|1381382_1381844_+|GatB/YqeY-domain-containing-protein
MAAVKSQLKSDLVAAMKAHDDMAKSAIRMAISAISAEEVAGDSARELTDDQEQAIITKQVNVRKDSAQAYRDAGRDELAEAEEAELAILQKYLPAQLEESEVRTIIDEEIAKAADGGPATMKLMGSVMKAVQARVMGRFDGKTTAALVKGALS

Crispr_ID: NZ_LT906441_8

• CRISPR_ID: NZ_LT906441_8
• CRISPR_location: 1436250-1436389
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_LT906441_8

Consensus_repeat	Method
GGTTCCATCACCATGCGCAGCAGC	CRISPRCasFinder

spacers of NZ_LT906441_8

>8.1|1436274|38|NZ_LT906441|CRISPRCasFinder
CCCCCAGTTCTCACCCCGCCATGACGTCCTCGTGCATG
>8.2|1436336|30|NZ_LT906441|CRISPRCasFinder
AACGACGATCCTGGCCCGTACGCCCCCTGC

CRISPR arrays and Neighbor proteins around NZ_LT906441_8

CRISPR arrays

The CRISPR arrays of NZ_LT906441_8

>merge|NZ_LT906441|8|1436250-1436389|CRISPRCasFinder
GGTTCCATCACCATGCGCAGCAGCCCCCCAGTTCTCACCCCGCCATGACGTCCTCGTGCATGGGCTCCATCACCATGCGCAGCAGCAACGACGATCCTGGCCCGTACGCCCCCTGCAGGTCCATCAGCATTCACAGTAAC

>NZ_LT906441|8|8|1436250-1436389|CRISPRCasFinder
GGTTCCATCACCATGCGCAGCAGC	CCCCCAGTTCTCACCCCGCCATGACGTCCTCGTGCATG
GGCTCCATCACCATGCGCAGCAGC	AACGACGATCCTGGCCCGTACGCCCCCTGC
AGGTCCATCAGCATTCACAGTAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_021103252.1|1444508_1444817_-|DUF4235-domain-containing-protein	unknown	unknown	gnl|CDD|379422
NZ_LT906441.1|WP_065860911.1|1433805_1435947_+|type-IIA-DNA-topoisomerase-subunit-B	unknown	unknown	gnl|CDD|235501
NZ_LT906441.1|WP_021103249.1|1442007_1442514_+|thymidine-kinase	unknown	unknown	gnl|CDD|235272
NZ_LT906441.1|WP_095141091.1|1440638_1441730_+|alkaline-phosphatase-family-protein	unknown	unknown	gnl|CDD|366747
NZ_LT906441.1|WP_021103254.1|1445556_1446336_+|DUF3710-domain-containing-protein	unknown	unknown	gnl|CDD|378867
NZ_LT906441.1|WP_021103251.1|1443920_1444217_+|DUF4193-domain-containing-protein	unknown	unknown	gnl|CDD|379391
NZ_LT906441.1|WP_157738752.1|1430744_1431167_+|DUF4065-domain-containing-protein	unknown	unknown	gnl|CDD|379096
NZ_LT906441.1|WP_065860903.1|1422395_1426538_+|ATP-dependent-RNA-helicase-HrpA	unknown	unknown	gnl|CDD|182986
NZ_LT906441.1|WP_021103253.1|1445000_1445432_+|dUTP-diphosphatase	unknown	unknown	gnl|CDD|234802
NZ_LT906441.1|WP_021103255.1|1446724_1447879_+|class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl|CDD|225174
NZ_LT906441.1|WP_065860904.1|1426571_1427459_+|acyl-CoA-thioesterase-II	unknown	unknown	gnl|CDD|224857
NZ_LT906441.1|WP_065860902.1|1421284_1422166_+|universal-stress-protein	unknown	unknown	gnl|CDD|366180
NZ_LT906441.1|WP_021103238.1|1427607_1428546_-|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|181169
NZ_LT906441.1|WP_036904271.1|1433246_1433468_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_065860905.1|1428802_1430398_+|RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|235640
NZ_LT906441.1|WP_021103247.1|1439301_1440342_-|DUF2183-domain-containing-protein	unknown	unknown	gnl|CDD|227187
NZ_LT906441.1|WP_095140993.1|1436479_1439083_-|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl|CDD|235503
NZ_LT906441.1|WP_021103243.1|1432637_1433171_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_LT906441.1|WP_065860675.1|1442562_1443762_-|DUF3071-domain-containing-protein	unknown	unknown	gnl|CDD|378619
NZ_LT906441.1|WP_065860906.1|1431365_1432526_-|alpha/beta-hydrolase	unknown	unknown	gnl|CDD|223730

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_021103252.1|1444508_1444817_-|DUF4235-domain-containing-protein	gnl|CDD|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	1.75296e-17
NZ_LT906441.1|WP_065860911.1|1433805_1435947_+|type-IIA-DNA-topoisomerase-subunit-B	gnl|CDD|235501	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed.	0
NZ_LT906441.1|WP_021103249.1|1442007_1442514_+|thymidine-kinase	gnl|CDD|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	6.39514e-55
NZ_LT906441.1|WP_095141091.1|1440638_1441730_+|alkaline-phosphatase-family-protein	gnl|CDD|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	9.42182e-32
NZ_LT906441.1|WP_021103251.1|1443920_1444217_+|DUF4193-domain-containing-protein	gnl|CDD|379391	pfam13834, DUF4193, Domain of unknown function (DUF4193). This domain of unknown function contains four conserved cysteines and a conserved histidine, including a CXXXXH motif.	1.9579e-52
NZ_LT906441.1|WP_157738752.1|1430744_1431167_+|DUF4065-domain-containing-protein	gnl|CDD|379096	pfam13274, DUF4065, Protein of unknown function (DUF4065). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and viruses. Proteins in this family are typically between 155 and 202 amino acids in length.	7.21012e-09
NZ_LT906441.1|WP_065860903.1|1422395_1426538_+|ATP-dependent-RNA-helicase-HrpA	gnl|CDD|182986	PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.	0
NZ_LT906441.1|WP_021103253.1|1445000_1445432_+|dUTP-diphosphatase	gnl|CDD|234802	PRK00601, dut, dUTP diphosphatase.	1.32159e-63
NZ_LT906441.1|WP_021103255.1|1446724_1447879_+|class-I-SAM-dependent-RNA-methyltransferase	gnl|CDD|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	1.27609e-88
NZ_LT906441.1|WP_065860904.1|1426571_1427459_+|acyl-CoA-thioesterase-II	gnl|CDD|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	2.03813e-96
NZ_LT906441.1|WP_065860902.1|1421284_1422166_+|universal-stress-protein	gnl|CDD|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.59077e-20
NZ_LT906441.1|WP_021103238.1|1427607_1428546_-|sigma-70-family-RNA-polymerase-sigma-factor	gnl|CDD|181169	PRK07921, PRK07921, RNA polymerase sigma factor SigB; Reviewed.	2.40633e-106
NZ_LT906441.1|WP_021103254.1|1445556_1446336_+|DUF3710-domain-containing-protein	gnl|CDD|378867	pfam12502, DUF3710, Protein of unknown function (DUF3710). This family of proteins is found in bacteria. Proteins in this family are typically between 237 and 284 amino acids in length. There are two conserved sequence motifs: DLG and DGPRW.	2.25467e-60
NZ_LT906441.1|WP_065860905.1|1428802_1430398_+|RNA-polymerase-sigma-factor	gnl|CDD|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	0
NZ_LT906441.1|WP_021103247.1|1439301_1440342_-|DUF2183-domain-containing-protein	gnl|CDD|227187	COG4850, COG4850, Uncharacterized conserved protein [Function unknown].	2.14911e-58
NZ_LT906441.1|WP_095140993.1|1436479_1439083_-|DNA-topoisomerase-IV-subunit-A	gnl|CDD|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_LT906441.1|WP_021103243.1|1432637_1433171_+|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.97452e-09
NZ_LT906441.1|WP_065860675.1|1442562_1443762_-|DUF3071-domain-containing-protein	gnl|CDD|378619	pfam11268, DUF3071, Protein of unknown function (DUF3071). Some members in this family of proteins are annotated as DNA-binding proteins however this cannot be confirmed. Currently no function is known.	1.23487e-25
NZ_LT906441.1|WP_065860906.1|1431365_1432526_-|alpha/beta-hydrolase	gnl|CDD|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.16618e-24

Protein sequences

>NZ_LT906441.1|WP_065860911.1|1433805_1435947_+|type-IIA-DNA-topoisomerase-subunit-B
MPQSGSASSTAKPRAATKRATDRDYEARNILVLEGLEAVRKRPAMYIGSTDTRGLMHCLWEIFDNGVDEALAGFGRRITVTLEKGGSILVTDEGRGIPVDVEPRTGLSGVEVVYTKLHAGGKFGGGAYNVSGGLHGVGASVVNAVSSRLDVEVDRKSTVWGMSFRRGVPGVFDGDGPDAPFTPESGVRKIGKAKRGATGTRVRYWPDSQIFLPDAKLSWSKLADRARQTAFLVPGLEIVITDERGVQTDPQTGDVLETVSETMRFDGGISEFAEYLANDQPVNDVMRLQGKSSFTETVPMLDENGGMTPTDVDRDLEVDIALRWGDGYDTTVRSFVNIIATPKGGTHVQGFEQGLLRAFSSSLEGTRLLKSSDDIVKDDVLEGLTAVVTVSLAEPQFEGQTKEVLGTPPVRRIVSRIVESEMAKFLTSSKAAVKPVARTVMEKVVNASRARVAARAHKENQRRKNALESSHLPPKLKDCRSSDPDLTELFIVEGDSALGTANVARDSEFQALLPIRGKILNVQKADLGAMLKNAECASIIQVVGAGSGKTFDIDQARYGKVIFMADADSDGAHIRTLLATLFFKYMRPMVEAGRVFSAVPPLHRFELINPKRGMEKYIYTYTDAEYQRTAARLTKRGVRFKEPQRYKGLGEMDADQLKETTMDKRHRMLRRITVDDVVEAEHTFEMLMGQEVAPRKKFIVEGAYRLDSEQIDA
>NZ_LT906441.1|WP_036904271.1|1433246_1433468_-|hypothetical-protein
MPASEEEAMSTMMIEDTALTTADRCDRCGAQAYYRVTLNNGGELLFCAHHAHMHEDKLKQVALHIQDESAKLH
>NZ_LT906441.1|WP_021103243.1|1432637_1433171_+|GNAT-family-N-acetyltransferase
MDTSSSVADRQPQHPRVRRATGEDLPDAARVQSECLAEIGAGSIDADVLAALTSEDAVESTVEQWRQLYDEGAQFWVLDDDGAIVGVAMTRRMPPAEAPTTLELATIHVMPRARLRGVADELLSSAIGQEPAFVWVLNTSEHAIGFFEKNGFSLDHTAGSLDNTLGGIPLQRMVRGV
>NZ_LT906441.1|WP_065860906.1|1431365_1432526_-|alpha/beta-hydrolase
MGSTSRSTRHLLGVTTKLLTATAILMGSVLVLLTIMELTPSFNNAGLAASVLLSSTAPWCVVAALVALTMAWLGRRAERASRIAAILTTIGLVLPLTVCVTTPVTVRHAGGTVNPLSALHTASMISPPDEVLHDTPRKGQSIQVYRPHSPGPHPVLVDIHGGGWNTDAKMPAVLRSLADTGWVVVRPSYPLSTPTRATWEKAPEAVACSWAWAGTHADRLHADTSSMVIMGDSAGGQLAINLSYQIAQGTASTSCGKLHEPAAVIGLYPALDLSQLASLKALGINHAATEYLGGTPEQHPDRYRDANSVTWVSPKAPRTFIVRGGRDTLVPPPGTDRFVARARAAGVGVTDVKIPLLDHAFDSQTRNSLGYQSTVSVLRACLAQVR
>NZ_LT906441.1|WP_157738752.1|1430744_1431167_+|DUF4065-domain-containing-protein
MPLFDDRIEAWKNGPVVPSLRHTTVMADEDVRLTDQQKANIDAVLAHYADNPGTALGELSHGERPWQEARGDCAPGENCSSPITHDSMRRAYSAQSTAAGVGPRRVAVPSGRQVADMDDVLSGCAAATKRWERALTLLAQ
>NZ_LT906441.1|WP_065860905.1|1428802_1430398_+|RNA-polymerase-sigma-factor
MSAFERIAVTSRSTSSTSKSAVDEEAKPTKTTRKRTSTSSTTRRGSASRTTKSSASATKSGSAGKASGSKTTAKTGTTKSTTSRTSGTKKTSATTAKTSGTKKTTTAKKTATKKKASTASTKASTKSTTTTRKRSTKSTGKKSPAKKKDPTIAEAASGQVDVEAKREGDEIVLTIGGKKRSLDDIDDSKYDPKQAAKDEAELNKEAQGFVVSDNDDTDEPEQQVMVAGATADPVKDYLKQIGKVALLNAAQEVDLAKRIEAGLFAGEQLSDPDASVADADRADYEWIAEDGVVAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIKQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAIVPADAVNFTLLQEQLHDVLDTLSEREAGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIEAKTMSKLRHPSRSQVLRDYLD
>NZ_LT906441.1|WP_021103238.1|1427607_1428546_-|sigma-70-family-RNA-polymerase-sigma-factor
MDTKTRVRTTDGIDGKDAVGLYLEGIAKTPLLSAADEVMLAKRIEAGLFAQAVLDGTVETKVEASTEELQQIAEDGEAAMARFVRANLRLVVSVARKYGRSRMPLLDLVQEGNTGLIRAVEKFDYAKGFKFSTYATWWVRQAISRGIAQQGRVVRLPVHVAEQVNQVSAARRDLERELGREPELFEIAEKLDLTEEKVAELVTFGRDHVSLDAPVEDDGDTSLGDLIARETAPGPDSIVLDAEDRTRLEVMLQDLDQRSADVVRRRYGLLDGRQAKLADIGKVWGITAERVRQIERAALATMREANQEAMAA
>NZ_LT906441.1|WP_065860904.1|1426571_1427459_+|acyl-CoA-thioesterase-II
MPSTTAELLDLLDLEVLEPNLFRGPRPETTWQRTFGGQVLAQSLVAGCRTVQDRKVHSLHAYFLHGGRNDAPIIYDVKRLRDGRTLSTRRVDARQHGRVIFTSEVSFKTSEEGLDHSDRKPSHVPDPEECPTLAQAMAAAMGRAMPMVTEWDALDVRYAGDGNAYHHQNHATHMRLWVKASSTLPDDAVTHRAILAYLSDMSLMAAAILPHLPALPAGHTVSPASIDHAMWFHRKGIADQWMLYDQISPSASGSHGFSMGRLIQNGRLIASCAQEGVIRVVDVADQGSPFGAPTR
>NZ_LT906441.1|WP_065860903.1|1422395_1426538_+|ATP-dependent-RNA-helicase-HrpA
MAVTLRNTLPDGGTIDFPPDLPISEHADEIAEAIASHQVVVVAGETGSGKTTQLPKICLGLGRTRIAHTQPRRIAARTVAERVADEMDVELGNQVGYQVRFTRHTTSDTALTVMTDGVLLAQISHDRDLRAWDTIIIDEAHERSLNIDFLLGYLKQLLSRRDDLKVIITSATIDTARFSAHFDDAPIIEVSGRTYPVEVRYRPLETQPDDPGEPVEAIDQPTGICQAVTELSREGAGDILVFLAGEREIRDAADALADLALVNTEILPLYARLSAAQQHRVFTAHQGRRIVLATNVAETSLTVPGIRYVIDPGTARISRYSSRTKVQRLPIEPISQASANQRAGRCGRVAPGICIRLYSEQDFQIRPEFTEPEILRTNLASVILQMAQARLGAINDFPFVETPDRSQINDGLRLLDELGALRSGHHDTPRLTRVGHQLAQIPIDPRMGRMILEGARRRCLREILIIVSALSIPDVRERPSDKRDEADGFHRRFTSEAALQTTLSAVDRSDDHRSGDWSTIRQRETAQAAVAATDAAGQPLRHTVHTGTRPVKPAQRANSRGKNHRDAGRDQHTQGQRTRGQHIRDKESTSPSQGIDDGGDIMSIVRLWHYLRHQRKAMGSSAFRRMCRAEYLNYLRIREWQDLHSQLKRIAKDLKLRRNDEPAEVGDIITALLSGLLSHIGLLKTSETRTSARRRGARPGPREYLGTRGSNFAINPGSVLAKHPPELVVAVELVETSRLWARNVAAIRPEWVEQVGSHLLKRSFSEPHWAASSASVVANERATLYGVPLWTDRRVNYGRIDAQVARQIFIRSALVERDWRARHDFLRNNDAVVTQAQELEDRSRQRGLMADDQALYDHYDQRIPSDIVSGSQFNAWWRRQDDKHLLDLTVDDLIEPGAVAVDQFPDTWQVGDLDLPVRYVFEPGSGHDGVTVQIPLPLLGQVPREPFTWQVPGLRQELATELVRGLPKQIRTQLVPAPDRARAALLWLADNGADHTKDFTCELARALTALTGVTIKDSDWHPENLSSHLRVGFEVLDGSGHRTAASKNVKKSQRPRTSQPRKMAHSEDLGQLQVDLAPKVAKTLTKAARTKQIHGATSWQFGAVPSHVDVRRAGVDAVGYPCLVDERDGVGTAVKETRTAADRSHGQGVVRLLMLCLPDPTKWVMAHMSNATKLSLADSPYPSVPDLLTDCRLKTVDSLARKHSDGIATIRDEKAFDSLALQVRQDQAERMAQVVEETSRILQSHAGARRALLSLPDGAARADMTSQLDDLVFCNFVSATPDPWFGYMSRWMDAVVVRAESLLLNPGRDATQMDEIDVLLGEYDELCAEQPAGRLPAQVEEVGFMIEELRVQYFAQRLRTHIPVSPKRIRQAIGQVRSQS
>NZ_LT906441.1|WP_065860902.1|1421284_1422166_+|universal-stress-protein
MTENRTQRVVIAGVDGSEDGLRATKFAAGSAKARSADLLIIHAVDDNGVAGAWGFAYDRKALEEVGQAIVEDAIKVALEQGLDKERIHGEVIVGNPAALLADRSEKVELIVVGRRATSGLERMFVGSTSVAIAGMASCPVIVISQAATPHPVGDKHKVAIAVGPQTSNTKTLTFACDQAKRYDAELEVVTVTPPLPAGATGGYKLTDESMERMISELDQRLAEIADPVVSSYPEVSCHRRVLTGQPVDELVSLSETVDQLIIGVNKHPLLGWTAGGVARGIMAHAKCPLGIVH
>NZ_LT906441.1|WP_095140993.1|1436479_1439083_-|DNA-topoisomerase-IV-subunit-A
MARRTAGDDLTESIIDVDVSNEMENSFLEYAYSVIYSRALPDARDGLKPVQRRILYSMDDMNVRPDRPHVKSARVVGQVMGQLHPHGDAAIYDALVRLAQPWSMRLPLADGHGNFGSLDAGPAAMRYTECRMAPAAMAMVEGLGEDTVDFVPNYDGKATEPGVLPAAFPNLLVNGASGIAVGMATNIPPHNLVEVIAALKYLLKNPAADLDKIMRYIPGPDLPTGGSIIGLDGVKSAYTSGRGTFRIRARATIEKVSPRRQGIVVTELPYTVGPEKIIAQIKTLVQSKKLTGIADVKDLTDLKNGTRLVIEIKNGFNPEAVLERLYKMTKLQDSFAINTVALVEGQPRTLGLLELLNVYLDHRLEVTLRRTKFRLGKAEERLHLIEGLLLAIVDIDEVIAIIRSSDDTASARERLMKAFDLDEPQANYILDMQLRRLTKFSRIELESEKDQLSSQIAEYTRIVTSDDELRKVVADELTAVSKKYGTPRRTVLLGSTGITATDVPLEVPDEPCWILMSATGHLARIDTTDPLPSDGPRADHDVITSATRTTTRGEFGVITSAGRLIRARAIDLVSLPATATAPSTSGGSPLTDLIDLDAGERALAVVSLDGDGPELALGTRHGVVKRVNPELLSRDCWEIITLKGDDEVVGAVQTHGDAGELCLITRGAALLHFPLASVRSQGRLGGGVTGMRSADPIIWAGVVADPDSVVVTVAGHDATSGATGSVKVTAFEAYPGKGRGTKGMRCHRFLKGETALVQAWAGARPAVACSPKGRPVELPEVDSRRDGSGTSVAASILAISTRCWSHPTASDSGAAEKTAVEAQPRSTAGSAISPDSPNSPDTVSNLGNDGPIPGPGRETEQPDLFDE
>NZ_LT906441.1|WP_021103247.1|1439301_1440342_-|DUF2183-domain-containing-protein
MSDRPFIGARIEDAVHRRLGEVLTRREWKPLLIPFRGYGSQNHIRILARVILAPHEIAEDPSSWYDSDMLVRRGWRNFGAVPAPQVRIEIETGGACIMARTDRLGYLDVRVRNEGLAPGWHDVLLRTEEGRETSAPILVVDSSQTFGIVSDIDDTVISTSLPRGFIAAWNTFVLTEQARQSIPGMARMYQKLLAEHPAAPVIYVSTGSWTTYPFLTRFLRRHGYPTGPMLLTDWGPTNTGWFRSGPNHKRQALRELARDFPNITWLLVGDDGQRDISLYQEFAELQPGHVRAIAIRQLSPTQQVLAHGTAVIMEDDEHAQWVPDPAPLVRAPDGDKLHLLLKDVLS
>NZ_LT906441.1|WP_095141091.1|1440638_1441730_+|alkaline-phosphatase-family-protein
MPAVARSLGLDDREWSGRSAPADPMAALPQARHWVVMLVDGMGRNLVEEHASLAPFLTRMNSIPDMTCAVPSTTATSLTCLGTGMEPGHHGTLGYTFRSPEGPIMNALSWANGPDPLTMQARPTAFERLAEHGVETFSIGPAGFVTSGLTQSGLRGPRYLSVRDEDDIDLRAELVADTLRGTTASVSYVYERSLDHVGHGSGCHSAQWRRRLTWTDELVEAIGEVLTPDSALVVTADHGMVDVPDDHMIIAEDQAGLLADVDELGGEPRTRHVYTDHPDEVAERWRSILADRAMVFTADQALHMGLLGKWDPAMRNRLGDVLAFMRGQWAVMTRQMPREMSLIGMHGSLTDDEMLIPLLYCEG
>NZ_LT906441.1|WP_021103249.1|1442007_1442514_+|thymidine-kinase
MITSRIGLSATARDVNGIDVYDDVVATLTTGTRVDYLICDEAQFYRPEQIDQLSRVVDDLGIDVFCFGILADFRTELFPGSRRLVELCDRLDKPPVMPLCWCGRPATHNARVVNGVMTTQGDQVVVGDTDTSDEVHYEVLCRRHHRQRITAERSRATLSEQTLPFDEV
>NZ_LT906441.1|WP_065860675.1|1442562_1443762_-|DUF3071-domain-containing-protein
MDSALSPREIQARIRSGARVADVADEAGVSVEDVEPFAVPVLAELDHVVSTALDGPIRHRNNPSSRRSLRSVVDRVATKVGFDPDDLTWSARRLADRSWEVCARWHGEQGPADPLSDDPQSHVATFRFDQHTRRSRPLDAGARWLTDDRVSASRTRETENPDEEPTVDLNDELAIVRAVSESADRHFFAGLLGQPEAPGTGEADQVGQPGGAADTRRAAQRPRTTTDHDQHSDEAEQDIASSTEQADAPTSSNPTIPGMTSTNGVYDFVPSTDSQMDALYEAVAGFQEDSVNIYEGLNSPMSATATSDPDDDSSTTAEQVTNEDDAADTGSTQGQVAEHDASGSDTTPDKDSATPDDDKNSTKGPKPGQTRKKQSRKRRKRASIPSWDEIMFGGPAPHA
>NZ_LT906441.1|WP_021103251.1|1443920_1444217_+|DUF4193-domain-containing-protein
MATDYDAPRKSDEEVREDSIEELKNHRNEQNSGKVDQDEVEAAEAFELPGADLSHEELTVRVLPRQNGEFTCASCFLVKGRSQLAEERDGKFYCVDCV
>NZ_LT906441.1|WP_021103252.1|1444508_1444817_-|DUF4235-domain-containing-protein
MKPEKIAWKIYASAIGAVTTLVSQKLVEGAWRYVTGDDEPPSAEDPEETTGRALSWAVASGLGVAGAQLIARRFTNRRWMKYSLVNPVTGKKVGVRRQDDND
>NZ_LT906441.1|WP_021103253.1|1445000_1445432_+|dUTP-diphosphatase
MIVPSVVDDDSSLPRYALPGDAGADLRCREHVILRPGERRLVPTGVRVAIPDGHVGFVNPRSGLAIRTGLSIVNAPGTIDSGYRGEIKVALVNLDQHEPIELQVGDRVAQLVIVPFVHAQFVRVDELDDTERGQGGHGSTGRG
>NZ_LT906441.1|WP_021103254.1|1445556_1446336_+|DUF3710-domain-containing-protein
MFGRKKKNDAVDETSPFQPKKEELDEQQDLDDETESHAPGDEDEVEADREDSRDDDEVAELYRPNLERVDGPFDYEEVDLDADEIERIDFGSLILTPFENMQMQIQLDQQSGAVQSLLVMQGGSALEVALFAAPSTGLIIDDVHRDMMSGTASEGGEANVGPGPLGAELRRIVPVKTPEGQEGYHVSRTWLVQGPRWLLRGVLMGEAAFQEDLNATGQLLLEFFCNLVVRRDGSPRVPGDLITLQVPNQLRADEQQQQQ
>NZ_LT906441.1|WP_021103255.1|1446724_1447879_+|class-I-SAM-dependent-RNA-methyltransferase
MTCDAHLGPIAHGGYCVARVDGRVVFVRGGLPGEDVSIEITDDSHASHWFAQVVSIRHPSPYRVVPPCPVAQLCGGCDFQHVELGQQRELKGAVLAEQLNRIAGIDWHGTVQPIPGSEDGLGWRTRMQYRSLDGVPALRGHRSHNLVAVPDDGCPLAHPAGRAAATVAAPHTQDLLLVTVSAASTDDPQVSVINDGELVLGATPVTESVGDRRWKVDASGFWQVHPHAAQTLGSVVLEELAPRPGETALDLYCGVGLFAGLLADAGARVTGIEISRRAVRLARRNVPGARFIAGRMERSLGRLPRRTNVVVLDPPRRGAGRKVVEAVAATSPRAIAHVACDPAALARDLKLFAEQGYRPRTIQAFDLFPMTHHVEAVAILEREV

Crispr_ID: NZ_LT906441_9

• CRISPR_ID: NZ_LT906441_9
• CRISPR_location: 1727589-1727682
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT906441_9

Consensus_repeat	Method
GTCTGGTGCTGCGAGGGGTGAGGGGC	CRISPRCasFinder

spacers of NZ_LT906441_9

>9.1|1727615|42|NZ_LT906441|CRISPRCasFinder
AGAGCAGTCTGAGACCACTGGACAGTCTGGGATCACAGGGCG

CRISPR arrays and Neighbor proteins around NZ_LT906441_9

CRISPR arrays

The CRISPR arrays of NZ_LT906441_9

>merge|NZ_LT906441|9|1727589-1727682|CRISPRCasFinder
GTCTGGTGCTGCGAGGGGTGAGGGGCAGAGCAGTCTGAGACCACTGGACAGTCTGGGATCACAGGGCGGTCTGGCGCTGCGAGGGGTGAGGGGC

>NZ_LT906441|9|9|1727589-1727682|CRISPRCasFinder
GTCTGGTGCTGCGAGGGGTGAGGGGC	AGAGCAGTCTGAGACCACTGGACAGTCTGGGATCACAGGGCG
GTCTGGCGCTGCGAGGGGTGAGGGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_065860681.1|1727696_1729106_-|argininosuccinate-lyase	unknown	unknown	gnl|CDD|179143
NZ_LT906441.1|WP_065860630.1|1730000_1731506_-|M23-family-metallopeptidase	unknown	unknown	gnl|CDD|366703
NZ_LT906441.1|WP_081672438.1|1735620_1738149_-|DNA-translocase-FtsK	unknown	unknown	gnl|CDD|224588
NZ_LT906441.1|WP_065860684.1|1718825_1720307_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_LT906441.1|WP_095141100.1|1724790_1725216_+|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|197670
NZ_LT906441.1|WP_065860638.1|1716768_1718829_-|GerMN-domain-containing-protein	unknown	unknown	gnl|CDD|237447
NZ_LT906441.1|WP_021103499.1|1739396_1740497_-|D-alanine--D-alanine-ligase	unknown	unknown	gnl|CDD|234993
NZ_LT906441.1|WP_095141007.1|1722219_1723614_+|MFS-transporter	unknown	unknown	gnl|CDD|369468
NZ_LT906441.1|WP_065860683.1|1720397_1721039_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_LT906441.1|WP_065860634.1|1725208_1725451_+|TfoX/Sxy-family-DNA-transformation-protein	unknown	unknown	gnl|CDD|377439
NZ_LT906441.1|WP_065860637.1|1721328_1721895_-|YqgE/AlgH-family-protein	unknown	unknown	gnl|CDD|234694
NZ_LT906441.1|WP_065860631.1|1729295_1729775_-|SsrA-binding-protein-SmpB	unknown	unknown	gnl|CDD|376590
NZ_LT906441.1|WP_036977299.1|1733387_1734536_-|peptide-chain-release-factor-2	unknown	unknown	gnl|CDD|234799
NZ_LT906441.1|WP_021103498.1|1738301_1739372_-|thiamine-phosphate-kinase	unknown	unknown	gnl|CDD|235583
NZ_LT906441.1|WP_065860636.1|1723685_1724417_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_157738760.1|1726562_1727153_-|DUF1707-domain-containing-protein	unknown	unknown	gnl|CDD|377959
NZ_LT906441.1|WP_065860629.1|1734729_1735344_+|DUF805-domain-containing-protein	unknown	unknown	gnl|CDD|377540
NZ_LT906441.1|WP_021103493.1|1732527_1733214_-|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl|CDD|225438
NZ_LT906441.1|WP_065860633.1|1725447_1725789_+|VOC-family-protein	unknown	unknown	gnl|CDD|319898
NZ_LT906441.1|WP_036957525.1|1731540_1732392_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|225088

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_065860681.1|1727696_1729106_-|argininosuccinate-lyase	gnl|CDD|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_LT906441.1|WP_065860630.1|1730000_1731506_-|M23-family-metallopeptidase	gnl|CDD|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	9.82066e-35
NZ_LT906441.1|WP_081672438.1|1735620_1738149_-|DNA-translocase-FtsK	gnl|CDD|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.26703e-148
NZ_LT906441.1|WP_095141100.1|1724790_1725216_+|MarR-family-transcriptional-regulator	gnl|CDD|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	9.00193e-14
NZ_LT906441.1|WP_065860684.1|1718825_1720307_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.49642e-51
NZ_LT906441.1|WP_065860638.1|1716768_1718829_-|GerMN-domain-containing-protein	gnl|CDD|237447	PRK13613, PRK13613, lipoprotein LpqB; Provisional.	3.51818e-42
NZ_LT906441.1|WP_021103499.1|1739396_1740497_-|D-alanine--D-alanine-ligase	gnl|CDD|234993	PRK01966, ddl, D-alanine--D-alanine ligase.	2.2843e-165
NZ_LT906441.1|WP_095141007.1|1722219_1723614_+|MFS-transporter	gnl|CDD|369468	pfam07690, MFS_1, Major Facilitator Superfamily.	6.59229e-17
NZ_LT906441.1|WP_065860683.1|1720397_1721039_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.93355e-77
NZ_LT906441.1|WP_065860634.1|1725208_1725451_+|TfoX/Sxy-family-DNA-transformation-protein	gnl|CDD|377439	pfam04994, TfoX_C, TfoX C-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the C-terminal presumed domain of TfoX. The domain is found associated with pfam00383 in Neisseria meningitidis TadA. It is also found as an isolated domain in some proteins suggesting this is an autonomous domain.	2.11042e-13
NZ_LT906441.1|WP_065860637.1|1721328_1721895_-|YqgE/AlgH-family-protein	gnl|CDD|234694	PRK00228, PRK00228, YqgE/AlgH family protein.	1.31553e-58
NZ_LT906441.1|WP_065860631.1|1729295_1729775_-|SsrA-binding-protein-SmpB	gnl|CDD|376590	pfam01668, SmpB, SmpB protein.	2.01621e-81
NZ_LT906441.1|WP_036977299.1|1733387_1734536_-|peptide-chain-release-factor-2	gnl|CDD|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_LT906441.1|WP_021103498.1|1738301_1739372_-|thiamine-phosphate-kinase	gnl|CDD|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	5.56399e-108
NZ_LT906441.1|WP_157738760.1|1726562_1727153_-|DUF1707-domain-containing-protein	gnl|CDD|377959	pfam08044, DUF1707, Domain of unknown function (DUF1707). This domain is found in a variety of Actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.	2.88301e-16
NZ_LT906441.1|WP_065860629.1|1734729_1735344_+|DUF805-domain-containing-protein	gnl|CDD|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.48812e-32
NZ_LT906441.1|WP_021103493.1|1732527_1733214_-|cell-division-ATP-binding-protein-FtsE	gnl|CDD|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	1.78233e-115
NZ_LT906441.1|WP_065860633.1|1725447_1725789_+|VOC-family-protein	gnl|CDD|319898	cd06587, VOC, vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases.	5.82249e-06
NZ_LT906441.1|WP_036957525.1|1731540_1732392_-|ABC-transporter-permease	gnl|CDD|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	3.44632e-51

Protein sequences

>NZ_LT906441.1|WP_157738760.1|1726562_1727153_-|DUF1707-domain-containing-protein
MTGTDDILDLRVTNEQRDRVIDYLGVALADGRLDHGEWEQRVEQAMRAKTRRELNATLRGLATVPLVSSAVSTRPLPTHGSSVGAGIVGLSALFTGPFGPLVGVAISERGSWSRRQIAKQANFQIDMFGLVVITMIVIGVGNMDLNGAVGDAMWAWGIVWVLGTLIRAIKAFEGTDWDDPVMKMLPRIVDEGQRPD
>NZ_LT906441.1|WP_065860633.1|1725447_1725789_+|VOC-family-protein
MIRPIRIDNVLIDVPNVEQAAAWYQEYAGLAVLFTTPDIAVLHTEDHAGPGILLRRSDRPSHGTVWFEVADAQLVADAWGLPVFAVATGKCVEIQDPWGNTVGFTDYSNTHTA
>NZ_LT906441.1|WP_065860634.1|1725208_1725451_+|TfoX/Sxy-family-DNA-transformation-protein
MNELESLPNIGPELAHALRSAGIADSDALRQIGAIEAWWRIHPRFTCLHSLLALEGAVQGIPKRQLDETTRRHLKEATQP
>NZ_LT906441.1|WP_095141100.1|1724790_1725216_+|MarR-family-transcriptional-regulator
MSTVRAWWELEQAFAAFNAELHRDYDVTGGQLALLRIIAERQPVTIRELRRELDWHPASLGQLVQRLVDRGLVVRTRDAADRRVRTLSLSRSGQELLAKTPLVGPVRLRQVELPTGDLAIMRRGFEVAIKAFALTPWSHDE
>NZ_LT906441.1|WP_065860636.1|1723685_1724417_+|hypothetical-protein
MTTTLKKACVIGMAGIMTIGLGACGNKSDSSSNAAGSDSAASTSTTTLKQVSKDDFTKTFSDKKVGGQKFSVIDSSQVGSQIDRLNQAVSQLKVSPASCDTVFKQVSAGVTKDEMNNVLVAAGGDESKPVAVTFNTKLTDRQKKTYQSQDEQIAKCGKMTMSGQGQTMNVNVKTSPLKGYENISKQASLIDTTSSMGKSDQQHNYQAYVWLTDDQLIRTSASDAKTAESTLKSAIDALKVVQG
>NZ_LT906441.1|WP_095141007.1|1722219_1723614_+|MFS-transporter
MQSRRDETSNSSPTTGHRDVNPKAAVPIMLTAFVLCLMIDNGFKFMTSPIAHDLHLSENTASLQASLAGIVIGIGAMVYAALADSVSIRTLLIIGMALVGVGSLIGFLFHGVWPMVLTGRLIQTSGLACAETLYVIYVTKHLPEKDQKTYLGFSTSAFQLAMLLGVLTSGVVATYISWTAMFLVALILVLTIPVIVKTVPAEETTQAHVDVLGLFLIAVFSSSLIIFVGNFAWLPAVVALVGIALFIWHIHAHGETIVQPEFFHNGRYVTTLLVVLVVYSTQLGLSAVVIPGAVQYVHHQTLATASFLIVPGYAVGAIVGALSGQIGRRLTSRRAILTALGLILVALVLTACLISQNTWVLVIAMMLFSAGFAMMYAPLVNTAIADIPAQKTGIAIGFYNLTINLAIPLGIAYSSKLADSRIHLLGDTGVAATYSSILWILAIIAAAGIAIFLIADHRLGRSSV
>NZ_LT906441.1|WP_065860637.1|1721328_1721895_-|YqgE/AlgH-family-protein
MILANPPAAGDLLISGSGLTTGIFAHSVVYLLDCDEDGALGVVINQPSQLDMAQILPQWVHLMTPPQCIFQGGPVSPNGAICVARVQQPHEEPPGWRPVRGATGLLHLDTPVELVHGAYSDLRVFAGYAGWGPGQLESEIIRGDWVHALARESDVFGSDPATLWRRVLRRQNGTEALLSTMPDDESLN
>NZ_LT906441.1|WP_065860683.1|1720397_1721039_-|response-regulator-transcription-factor
MVQIVLQREGYVTYWCDNGADALDSCTGFNPDLILLDLMLPGRNGIEVCRDIRRTSGVPIIMLTARSETADVVSGLESGADDYVSKPFKTKELVARVRARLRQPNDLATPDVIALGGLVIDTAAHRVTRDGAEIMLTPLEFDILVALARRPNVVLSRDTLLEEVWGYQRSSADTRLVNVHVQRLRSKIELDPEHPRLIITVRGAGYRAGGEER
>NZ_LT906441.1|WP_065860684.1|1718825_1720307_-|HAMP-domain-containing-histidine-kinase
MIAITLSLALIVLVAGGMFLMQRVGDGILTAKRQSSVAEATAVVNRMQTELEGTDLRTSSLYERLTQLADEAASPTGHYHIIIQGSVSGLISAGVSADSVPQNLIDTIASSDGVFVTPTTLRFTDTSRGQIPGVVVGTTLWVPGQDMRIPIYFLFPLEQEVHTLTTIKGVVALTGVLIVMGLGFTTLLATRAVASPIRRASGTARRLADGHLDERMPVHGTDDLAKLATSINEMAAQLQGRIVDLEQLSTLQQQFVSDVSHELRTPLTTVRMAADVIADQMDEADPAAQRSAHLLMTQLDRFEDMLSDLLEISRIDAGAATLALEEVDIVDLVQAEVQAAQPLATRMHTQLRVHVFSGATAEIDAIRVRRILRNLLSNAIEYSECRPIDVTVGYDLHAVAVTVRDHGVGLEAWQVDKLFGRFWRADPSRVRTVGGTGLGLAISHDDAELHGGRLEAWGRPGDGAQFRLTLPRRRGTELTSSPLPLVPSDRQEP
>NZ_LT906441.1|WP_065860638.1|1716768_1718829_-|GerMN-domain-containing-protein
MRFTRPRDQHETPRTSADRTRPDRVRTDLTCDTGGCHGTGACLHTGTCHHTGGCHQTSADDPSLPIAHRDLSCRSVLSRRSVLGAGVGAGALALTGCAGVPTEGPVERVNSPGPAAGQDPIDVNPRPPEPGASRELIVAGFLQAMSSSTDAYRSARAYLTDEAAQHWDPHAGALIYDSEFHKPTVDDDRAVLHAPLIATLDASGHHDLRGHGFLDHDFALVKVAGQWRVSAPPTGLLLSLFAFERGYHTISIYFLGRVSGLVAPDVIHLPQAEANPTNAVKALLAGPPKGGAAADGSESIWYSGIPSSVELSSESISIDANGVATVPLNARAARLSPDELRVMAAQFTWTLSQFSQVSRVRFTARGVPLTLADAAEDGTVSLDLFASMAAYENHDKLAVTVVRGGTLQSLVSDETFRPLSGSLGTLRPSAISPSVISPSAISSSTAPSGAIPSATPDHQWALVDQRRTGLWWWCTGARTARKLASGTAMVRPQITRDHTIWTAEDTGSVTPVVHAVTPAGRPRPVNATALRRTRIRAFSISPDMTRIAFILGEGEGSRLAMSTLGKDSSGMLVIGQPEVRVVAEMDPGMTIAIDVGWISQTKLMVIARSAVGASGTPFELCCDGAEVTPVGQLTGANMVQLATVASADTVSAVVMTESGHVLRYEYRYRWTQLGEDASITAVALSG
>NZ_LT906441.1|WP_065860681.1|1727696_1729106_-|argininosuccinate-lyase
MSLWGGRFAGGPSEALAALSVSTQFDWRLARHDIAGSKAHAGVLHRAGLLTDEQFDGLITALDQLDADVADGSFTPSEEDEDVHTALERGLIERAGADLGGRIRAGRSRNDQIAALLRMYLRDEARSLAGEVLDLVEVLRRRAEEAGDAVIAGRTHMQHAQPVLLAHHLAAHAWPLIRDVERLRDLDARLDSSPYGSGALGGSSLGLDPVQVAGELGFSGSVPNSIDGTAARDMVAEFAFVCAQIGVDLSRLSEEIVIWNTREFSYVTLDDSFSTGSSIMPQKKNPDIAELARAKAGRLIGDLAGLMASLKGLPLAYARDLQEDKEPVFDQIDQLHLLLPAVTGMMDTAVFHLDRMAQMAPEGFSLATDIAEWLVRQGVPFRAAHQISGACVKVCEEQGKELADLTDDELAAVDERLTPQVRSVLTVDGAVAARTGRGGTAPVRVREQLAELGETVTTLRRFSQRQAAQ
>NZ_LT906441.1|WP_065860631.1|1729295_1729775_-|SsrA-binding-protein-SmpB
MPRERGLTVVARNKKARHDYTIGDTWEAGLVLQGTEVKSLRAGKASLADAFAQVDEHGEVWLYNLHIPEYAFGTWRNHDVMRKRKLLLNKREIAKISREMDSPGKTIVPLELYFKDGYAKVEIAVATGKREWDKREAIKARDAKREAERAMSSRLKRRR
>NZ_LT906441.1|WP_065860630.1|1730000_1731506_-|M23-family-metallopeptidase
MRRLLPPAKSTTFASPQRDAKDDPSAMSRRHRRVQGLALAFVVGLSGWAVSAAGTIHTASADDLTDRKDEVSKQITKSEAAAEGYSDEVNKAADALQKSQNDLDQARKTLQGAQDAVSQAKAADEAKAAELQKARSDLSRAEQKVRSNEAAQVREHRKLSVVVSRTVQQQTPMMGVATFLTNMDSGDMNARIQWSNALMAGGQQALDQLETRQIALSKARDVEKQARDRVAREKQAVEDLLERKQQAESAAGTAKQDVAAAVTANEQAKKSADAKLAGERKHQEELRAEEDQLDKRIKERIAAAKRAEEARRRAEAERRAKEAAAKAAAEKKAAKKAESTSRKSAKHSRPHRHHPKKAHKRSSGSTRKASSYFDYPVNGPITSPYGQRFHPVLHVWKLHDGTDFGASCGTPIRAPRDGVVAEKYFNRGYGNRLMLDHGKIGGHYVTTGYNHASSYTVGVGQHVSRGQVIGYVGTTGFSTGCHLHFMVWTDGNRENPMGRWF
>NZ_LT906441.1|WP_036957525.1|1731540_1732392_-|ABC-transporter-permease
MTIAVIVTMWVSLSLFGAALLAAQQVDLIKGKWYDKVEVSVFLCVKNVPGDNCVPGKDASQADKDAIKAALQSDPQVEKVYYESKKDAFEEYQRVYKDSPVKEILTVDTIQDSFRVKLVNPENYREVVAATQTMKGVQAVVDLHTALDPLFVWLNSLRWTTVGLSALLLVAAALQITNTIRMAVFARRRELEIMKLVGASNRFILTPFLLESLVAGLIGAILAAGTLAAGTYVIVMKKFAVTMSTIAWVNWHHVWVAIGWLAIVAVVLSLIPSYAAAKKYLKV
>NZ_LT906441.1|WP_021103493.1|1732527_1733214_-|cell-division-ATP-binding-protein-FtsE
MITFDSVSMVYAGQTHPALMNVSVDIDDGEFVFLVGPSGSGKSTFIRLILGEQRPSRGRLMVNGRNVGLMSRRRVASLRRGIGTVFQDFQLLPGKTVYENVAFALEVIGKSVRCIRDEVPRTLELVGLADKGDRMPGELSGGEQQRVAIARAVVNHPGILIADEPTGNLDPETSIGIMKLLDRIHRSGTTVLMATHDATIVDQMRRRVLELDHGHLVRDQKAGLYGTQ
>NZ_LT906441.1|WP_036977299.1|1733387_1734536_-|peptide-chain-release-factor-2
MCPRTEQTIEYLIVALVDLQQTVDELNHSLESIELVLDPETKKKEIAELEQQAAAPDLWDDQEHAQKVTSRLSALQAELSRLEKLRSRLEDVSVLLEFAAEGDDEDSEKEAEQELERMRDEIDSLEVRTLLSGKYDEREAVVTVRSEAGGVDAADFAEMLLRMYTRWAERHDYKVEMLDTSYAEEAGIKSATFILHAPYGYGTLSVESGTHRLVRISPFDNQGRRQTSFAGVEVLPVVEEADHVDIPDSDLRVDVFHSSGPGGQGVNTTDSAVRLTHLPTGMVVTCQDERSQIQNKAAAMRVLQAKLLEKAHQEQEAEMNSLKSEGNSWGAQMRSYVLHPYQMVKDLRTNYEVGNTDAVFDGNIDGFIDAGIRWRRSTENES
>NZ_LT906441.1|WP_065860629.1|1734729_1735344_+|DUF805-domain-containing-protein
MPNDQWGPYKTPEDQPQRPASDIPQGQGNSHEQNPHATQYPQQPQDQQPGRGQYAPNPCGYDPYTPQQVGHPRPRVSFPTAVRLFFKNYAVFNGRASRSEFWWVVLLNILVGAVLGGINGGMGGSTTNPSTLYSVLSLVWELATLVPRIALGVRRLHDTNRSGFNLFWALLPVVGWIVLLVFYCQSSHPDAWRRYDNGTLPVEE
>NZ_LT906441.1|WP_081672438.1|1735620_1738149_-|DNA-translocase-FtsK
MATRGASPSRSRKKTGATTQGRKKQTSTSSRSKKSTSSRASTSKATTSRKSASRGTASSAQNPVSRALSATWGGLVGAMGALVRRIGSSLPTPQNRRDGAATITAFGSILVAIAFWFQLPGPVGDALRIGVSTIFGMISYALPIAGFWMSWRAYRHPDRLGSGSRQLGGWLVLCLGLQGLVNVADGLPGPDDAAAMRDAGGILGFISSHLLSDILTVWGGVPLLAVLTGLGSYLVAGPGLGSRMSAHRANRRQRQQRRQEELELDSRDAYETPLVGDGDDDDIPTLPGAAYNPGLLGRDADETPTAVLAETNDQEQSEGRSRTTAGLPADFTVHEHADLQPADQEPMPERVEQLADDVAYTLPSYDLLKPGSVPQARTEASDAVVAKLTGVFNEFGIDAKVTGYSRGPTVTRYEVELGAAVKVEKVTALSKNIAYAVASPEVRILSPIPGKSAIGIEIPNTDKEIVSLGDVLRSAKARNDHNPLVVGLGKDVEGGFVIANVAKMPHLLVAGATGSGKSSFVNSLITSVMMRATPDEVRMMLVDPKRVELTQYEGIPHLVTPIITSAKKAAEALQWVVREMDQRYDDLAAFGFRHVKDFNKAVKAGQVQLPEGSQRTLAPYPHLLVVVDELSDLMLVAPRDVEDSIVRITQLARAAGIHLVLATQRPSTDVVTGLIKANVPSRLAFATSSMTDSRVILDQPGAEKLVGQGDGLFLPMGASKPIRVQGSWVSDAEIHTVAEHVRSQMAAHYREDVAAPPATKKVAEDIGDDLELVLEAAKLVVELQLGSTSMLQRKLRVGFAKAGRLMDILETRNVVGPSEGSKPREVLVRPDDLDDVLANLQA
>NZ_LT906441.1|WP_021103498.1|1738301_1739372_-|thiamine-phosphate-kinase
MTEQTIAQVGEFPLIDSLVAPLSMGPQVQLGPGDDGAVVTIDGSMVVSVDLLIENSHFRRDWSSAHDVGRKAIAVNVADIEAMGAQPLTVVLGFSTPASLPVRWAREFMAGMAQEAQLAGVSIVGGDTTNGEIISISVTVMGQTAGLAPVRRDGAQVGDEVAYVGRLGYAAAGLDLLMHGIGWLQPGEGAHQRGFDGSTADAARRFQHDVSRYRETIESQRHPQPPYGQGRVAARAGAHAMIDVSDGLIADLGHIAQNSGVRVNLRSEAFIIAEPVRAAAERIDTDPMTWMLTGGEDHALVATFAPGTVPEGWTVIGSVDAAAGPDAAGSAPMGHPCIMVDGQQWQGAGGWTHFSS
>NZ_LT906441.1|WP_021103499.1|1739396_1740497_-|D-alanine--D-alanine-ligase
MADPITVAVVFGGMSSEHSISCLTAANVVAAMDADRFTVVGIGISPDGVWTSWSAQDVLDLPRTGSLPEVSSVGHPGVTLQRHADGCHLVTSDGIDTPIDVIFPLLHGPYGEDGTIQGLLEMNGARYVGCGVASSANCMDKHLTKVVLSEAGILVGPYVVVRPHEWEDDRQGCLDRIGELTMPVFVKPARGGSSVGITKVTTGDDLVAAIEQARRFDPKVIVEQGITGREIECSVLDGHGGHAPRASAPGEIIVHDPDGFYDFQAKYLTGQDRATVSIPADLDEATSARVQQVAIDAFRALGCEGLARIDTFVTGDGTIYVNEPNTMPGFTTTSGFPLMWQASGLTYPQIVTELVELALERPLGLR

Crispr_ID: NZ_LT906441_10

• CRISPR_ID: NZ_LT906441_10
• CRISPR_location: 1989889-1989972
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT906441_10

Consensus_repeat	Method
CCCTTGGGGCCCCAAGCCTGTGC	CRISPRCasFinder

spacers of NZ_LT906441_10

>10.1|1989912|38|NZ_LT906441|CRISPRCasFinder
GGGCTTGTTGGGTGTTCCGCATTTGACGGCGACCCCTA

CRISPR arrays and Neighbor proteins around NZ_LT906441_10

CRISPR arrays

The CRISPR arrays of NZ_LT906441_10

>merge|NZ_LT906441|10|1989889-1989972|CRISPRCasFinder
CCCTTGGGGCCCCAAGCCTGTGCGGGCTTGTTGGGTGTTCCGCATTTGACGGCGACCCCTACCCTTGGGGCCCCAAGCCTGTGG

>NZ_LT906441|10|10|1989889-1989972|CRISPRCasFinder
CCCTTGGGGCCCCAAGCCTGTGC	GGGCTTGTTGGGTGTTCCGCATTTGACGGCGACCCCTA
CCCTTGGGGCCCCAAGCCTGTGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906441.1|WP_081659074.1|1991683_1992991_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl|CDD|180174
NZ_LT906441.1|WP_021105693.1|1994022_1994337_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_021104379.1|1983053_1983857_-|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl|CDD|180561
NZ_LT906441.1|WP_021105687.1|1981628_1982849_-|arginine-deiminase	unknown	unknown	gnl|CDD|234949
NZ_LT906441.1|WP_095141023.1|1979422_1980064_+|septum-formation-protein-Maf	unknown	unknown	gnl|CDD|178901
NZ_LT906441.1|WP_036957474.1|1994338_1995745_+|PLP-dependent-lyase/thiolase	unknown	unknown	gnl|CDD|366004
NZ_LT906441.1|WP_021104376.1|1984747_1986523_+|ATP-grasp-domain-containing-protein	unknown	unknown	gnl|CDD|227111
NZ_LT906441.1|WP_157738774.1|1980603_1980846_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_021105689.1|1987345_1988155_+|purine-nucleoside-phosphorylase	unknown	unknown	gnl|CDD|236183
NZ_LT906441.1|WP_036957470.1|1979246_1979450_+|hypothetical-protein	unknown	unknown	gnl|CDD|379386
NZ_LT906441.1|WP_051254873.1|1986537_1987284_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT906441.1|WP_021105691.1|1990095_1990692_+|uridine-kinase	unknown	unknown	gnl|CDD|223645
NZ_LT906441.1|WP_065860482.1|1988187_1989849_+|phospho-sugar-mutase	unknown	unknown	gnl|CDD|100092
NZ_LT906441.1|WP_021104363.1|1995995_1997786_-|methionine--tRNA-ligase	unknown	unknown	gnl|CDD|237029
NZ_LT906441.1|WP_036957462.1|2004664_2005429_-|DUF2344-domain-containing-protein	unknown	unknown	gnl|CDD|378393
NZ_LT906441.1|WP_081659075.1|2000013_2003139_-|Rne/Rng-family-ribonuclease	unknown	unknown	gnl|CDD|273254
NZ_LT906441.1|WP_021104362.1|1998427_1999483_-|ribonuclease-HI-family-protein	unknown	unknown	gnl|CDD|260010
NZ_LT906441.1|WP_021104370.1|1990888_1991566_-|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl|CDD|234625
NZ_LT906441.1|WP_081659073.1|1983968_1984418_-|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240032
NZ_LT906441.1|WP_036957461.1|1993353_1993839_-|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224439

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT906441.1|WP_081659074.1|1991683_1992991_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl|CDD|180174	PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional.	0
NZ_LT906441.1|WP_021104379.1|1983053_1983857_-|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl|CDD|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.1755e-118
NZ_LT906441.1|WP_021105687.1|1981628_1982849_-|arginine-deiminase	gnl|CDD|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
NZ_LT906441.1|WP_095141023.1|1979422_1980064_+|septum-formation-protein-Maf	gnl|CDD|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	6.37668e-68
NZ_LT906441.1|WP_021104376.1|1984747_1986523_+|ATP-grasp-domain-containing-protein	gnl|CDD|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_LT906441.1|WP_021105689.1|1987345_1988155_+|purine-nucleoside-phosphorylase	gnl|CDD|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	5.87971e-111
NZ_LT906441.1|WP_036957470.1|1979246_1979450_+|hypothetical-protein	gnl|CDD|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	1.64732e-07
NZ_LT906441.1|WP_036957474.1|1994338_1995745_+|PLP-dependent-lyase/thiolase	gnl|CDD|366004	pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.	3.56865e-48
NZ_LT906441.1|WP_021105691.1|1990095_1990692_+|uridine-kinase	gnl|CDD|223645	COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].	2.46966e-14
NZ_LT906441.1|WP_021104370.1|1990888_1991566_-|ATP-dependent-dethiobiotin-synthetase-BioD	gnl|CDD|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.58226e-67
NZ_LT906441.1|WP_021104363.1|1995995_1997786_-|methionine--tRNA-ligase	gnl|CDD|237029	PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed.	0
NZ_LT906441.1|WP_036957462.1|2004664_2005429_-|DUF2344-domain-containing-protein	gnl|CDD|378393	pfam10105, DUF2344, Uncharacterized protein conserved in bacteria (DUF2344). This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function. This domain is distantly related to tRNA pseudouridine synthases, suggesting this family may carry out a function related to RNA modification. But this family appears to lack the catalytic aspartate found in pseudouridine synthases.	9.62383e-61
NZ_LT906441.1|WP_081659075.1|2000013_2003139_-|Rne/Rng-family-ribonuclease	gnl|CDD|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	2.07833e-150
NZ_LT906441.1|WP_021104362.1|1998427_1999483_-|ribonuclease-HI-family-protein	gnl|CDD|260010	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes. Ribonuclease H (RNase H) is classified into two evolutionarily unrelated families, type 1 (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type 2 (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a sequence non-specific manner. RNase H is involved in DNA replication, repair and transcription. RNase H is widely present in various organisms, including bacteria, archaea and eukaryotes and most prokaryotic and eukaryotic genomes contain multiple RNase H genes. Despite the lack of amino acid sequence homology, type 1 and type 2 RNase H share a main-chain fold and steric configurations of the four acidic active-site (DEDD), residues and have the same catalytic mechanism and functions in cells. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. Prokaryotic RNase H varies greatly in domain structures and substrate specificities. Prokaryotes and some single-cell eukaryotes do not require RNase H for viability.	5.28784e-61
NZ_LT906441.1|WP_065860482.1|1988187_1989849_+|phospho-sugar-mutase	gnl|CDD|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_LT906441.1|WP_081659073.1|1983968_1984418_-|NUDIX-domain-containing-protein	gnl|CDD|240032	cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.74385e-36
NZ_LT906441.1|WP_036957461.1|1993353_1993839_-|Lrp/AsnC-family-transcriptional-regulator	gnl|CDD|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.86418e-42

Protein sequences

>NZ_LT906441.1|WP_065860482.1|1988187_1989849_+|phospho-sugar-mutase
MTSLTPQRIDEVTAWIDQDPDETTRAELSTQLRAAKDGDPEAIGRIEAQFSGPLTFGTAGLRAALGPGPARMNRVVVQRTAAGFAAWLHANGHTNGSVVVGFDARHNSDVFARDTAEIMAGAGFHVLLADSPIPTPVTAFGIGHYGAVAGVMVTASHNPPADNGYKVYLGDGSQIVPPTDSRIAEQIEAVSTRPVGDIARGDDIELVGDDLIGAYVSRAVELASTVPDDVTWVYTAMHGVGTRVVRRLVEQAELPEFIGVSEQLEPDPDFPTVSFPNPEEPEALDLALDRARCQDADVVIASDPDADRCAAAAVIDGQWRMLTGDELGTLLGDDALRRGVDGVYANSIVSSTALATLASAAGKQHRTTLTGFKWIGRVPGLAFGYEEAIGYCCDPARVPDKDGITALARILRLVGELKANGQTINDRLDEIWRRIGLFRTSQLAVRVTDMSIISDAMDTLRATPPDTLLDEPVSVRDLLDPNNDSGLPEQNAIELSGERVHVVARPSGTEPKLKVYLEVRSSDTDDLAAAKTRVDEQMVRLRAEMSAALGLQS
>NZ_LT906441.1|WP_021105689.1|1987345_1988155_+|purine-nucleoside-phosphorylase
MHHDFSDPTATAELAARTIRERLGIDRADIGLVLGSGWSAGADHLGEIIGSLSLTEIPGFSAPVVTGHGGDLLAIRVSTGRIAVVLTGRTHLYEGRGVEPVVHGVRTVAALGAGTMVLTNGCGGLNPSWEPGTVVAIRDHINLTGATPLRGATFIDMTTTWTPELVQKVQQIDTSIPTGVYAQFHGPSYETPAEVRMAGIIGADLVGMSTALEAIAAREAGLDLLGLSLVTNLAAGVSPEPLDHAEVVAAGRAAAPRLATLLSRIAVEL
>NZ_LT906441.1|WP_051254873.1|1986537_1987284_+|hypothetical-protein
MLTGILDVMIISLGPALLLVLFVVGMVTTFAALARSQRQAREIERQNVEQRELQIGRIRRATEDDVTEFGEELRSLDADLPVDDLSPEATSDWSHALDCYDRAKDLLSQDHSTQVVPLVTEALQEGRHAVMCVRARAAGDPVPQLRPPCFFDPSHGPSVRDVMWTPDGGAARAVPACAADASRIEQGQAPWIRTVALNGNQVPYWQDEDYSMWAKGYFHQFRDSTAGGIAMGALGLGILGAIFNSFDD
>NZ_LT906441.1|WP_021104376.1|1984747_1986523_+|ATP-grasp-domain-containing-protein
MTKVIRRVLIANRGEIAVRIIRAARDAGKTSIAVYADSDADNLFVKLADEAYALNGTTPAQTYLDVDKILTVAKQAEVDAIHPGYGFLSENADFAQAVIDAGLIWIGPPPEAIRKLGDKVQARHIAQKVGAPLVPGTADPVDSADEVVEFARTHGLPIAIKAAFGGGGRGLKVAREMDEVADLYESAVREAVTAFGRGECFVERYLDRPRHVETQCLADQYGTVQIISTRDCSLQRRHQKLVEEAPAPFLSQEQQERLYQSSKDILKEAGYVGAGTCEFLVGQDGVISFLEVNTRLQVEHPVSEEVSGVDLVQEMFRVAEGERLKDHDPALRGHSFEFRVNAEDPGRGFMPGPGTLTVWRPPTGPGVRVDEGYHSGMTVPGAFDSLIGKLIITGATRKQALQRARRALDEMEIEGMPSVIPFARVVVRDPAFTAEDGHFGVFTDWIESEFSGEIEPYVGELGNPEETDPPRDVVVEVNGKRVEVRIPASLQAPRPGATSRSKRPTRRSRGGHRPAPPSGNTLASPMQGTIVKVGVVEGEQVNEGDQVAVLEAMKMEQPLVAHRSGVVRNLIAEPGATVASGEVICEIVDAD
>NZ_LT906441.1|WP_081659073.1|1983968_1984418_-|NUDIX-domain-containing-protein
MTRIGPRSQELCGQSRRSGGSTSLQILLVRRADSGAWTPVCGIVEPGERPDHTIVREALEEAQVHVVVDRYLAVDVDDPLTYPNGDQCQFLNHVFSCRWVDGQARVGDDESSQVRWFDIDELPALSVRHRAAVELALAPPRGAVLGLLH
>NZ_LT906441.1|WP_021104379.1|1983053_1983857_-|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MTKIALAIAGSEATGGAGAQTDIKTFHQLGVYGCTALTCIVSFDPANDFGHRFVQIDPQVIHDQIEASVGVHSQIDAVKIGMLGTPTTIGAVADALKTYQFPQVVLDPVLICKGQEPGAALDTDNALREQVLPLADLVTPNLFETQVLAGVDEITTVDQLKDAARRIHDHGVPAVLAKAGTLLGTGTALDVFYDGQTMEVLEVPAVGSERVSGAGCTLAAAITAELAKGAEPLQACRTAKQVVVSAIENRMHGKAPFDYAYQGCYTG
>NZ_LT906441.1|WP_021105687.1|1981628_1982849_-|arginine-deiminase
MTDHRHEVRSEVGRLRTVLLHRPGDELRRLTPRNSDSLLFDGLPWVDQAQRDHDLFAQMLRDRGVEVLLLHELLEQTLELPEARTRAVDDTFGDLRYGDTLRRYLRQRAAELSSHDLASVLMSGVSAHDFAKLDLTLPTCLVTSLLNDEDFVVDPLPNLLFTRDSSVWIGEYPAVTSLTMPARRRETQLTELIYTFHPRFAGTQHAHGWRDENLEGGDVMHLAPGVMAVGVGERTSSAGAERIARTALKLGAAHTVLAVPIHQQRATMHLDTVCTMVDTDAVVMYPQVADELQALPMTADGDEIVVGSPQPFLVAAAEAMGIDRLRVIDTGLDPVTAEREQWDDGNNTLALAPRVVVAYNRNVETNRRLEAAGVDVLTIPGSELGSGRGGPRCMSCPILREPLPQS
>NZ_LT906441.1|WP_157738774.1|1980603_1980846_-|hypothetical-protein
MPIRTVAVHVVDNPNNVTLVIDPSQGKQTYQFLIHRLASMGMTITANGNNSLIFHGRGWTGAYTASADAAALTLRTGPVG
>NZ_LT906441.1|WP_095141023.1|1979422_1980064_+|septum-formation-protein-Maf
MARIPTAVLMHQLILASGSSARLTQLRLAGLDPRTIVSGVEENPLPGETALELTCRLAQLKARTVADHVEMDSPMIIIGCDSVLQMEGRIHGKPGSIERVKRWWHQMRRQSGMLVTGHHVIVRDDRGERSATRAASTALTFADLTDEEIDAYAETGQATQVAGGVMMDGLGAPFITRIVGDPHNVTGISLPLLRQILLDLDVPWQSLWQSSEA
>NZ_LT906441.1|WP_036957470.1|1979246_1979450_+|hypothetical-protein
MSVSKAQLTDEELGALVAVLAAVLQPVGNPHAPEQSVMAFGWKSYWRPIREPFLPGQAAWRGSLRRY
>NZ_LT906441.1|WP_021105691.1|1990095_1990692_+|uridine-kinase
MARTIILLAGPSGSGKSRLARVSDLPQLRLDDFYRDADSPGLPRRHGMIDWDDVSSWNVDAAVTVLHSLATTGRARVPRYNLSTSQAEGTHVVDVTGHRAIVAEGIFATHLLQPCRGAGFTVVPIWLDRPRNLNFAHRLLRDLKEHRKPPKVLLRRGWALRTAEPEIRAHAIAAGFRPMGMAGAARLVGRIVADDDRP
>NZ_LT906441.1|WP_021104370.1|1990888_1991566_-|ATP-dependent-dethiobiotin-synthetase-BioD
MAIVVITGTNTDVGKTYTTASVARSAIEQGARVTVCKPAQTGEPAGSGDLSTVQKLLGADAVHDYVEFARYPEPLAPNISARRAGMAQLDLDETVRRIRELDAPGELVLVEGAGGLLVRIADEWTIADLAAKLCAPILVVTSTGLGSLNCAELTVEAAQRRGITVLGLIGGIYPDDPDLVTRLNVEEFEEVCGVPLLGLVPQGQAALADDSRVVQMLSGLLATTK
>NZ_LT906441.1|WP_081659074.1|1991683_1992991_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNTVKDFVGYDQDHVWHPYGPMPAAMRHRLVDDAEGVYLTMHDDPAAEPTQLIDAMSSWWAACHGHRHPALVAAAHRQIDRMPHVMFGGLTHRPAIELASRLVEITDDPLTKVFFADSGSVAVEVAIKMALQYQRGIGHPERRRLLTWRSGYHGDTFQAMSVCDPQGGMHSLWTGVLTEQVFAPAPPVIGTSADECSRYLEHLESLIDESIAAIVIEPVVQGAGGMRVHDPHLVTRLREICDRHGVVLLADEIATGFGRTGTLFATQAAGVTPDIMCVGKALTGGFMTLSAVLTTDEVAAAISSPDGGGALMHGPTFMGNPLACAVANASVGLIQDGDWRTSVPRIETELMTGLAGAKDVSHVADVRVRGAIGVIEMDHDVDMEATTQAAIDHGVWLRPFGRLIYAMPPYICTSEQIATITGAMTAAARAAGGHD
>NZ_LT906441.1|WP_036957461.1|1993353_1993839_-|Lrp/AsnC-family-transcriptional-regulator
MGKKLQLDEIDREIVLQLRKDGRMSNADLARHVSLSAPACLRRVKHLEDSGVIRGYRAVIDPAAFGHSLEVFVWVDLDASNREAMLAFEDRVSQMEEVVECHRVFGRPDFFMRVLVRDPADYEDFLTNKLIGVPLVLRVTSTPSLKKIKTEDHGWSEGALG
>NZ_LT906441.1|WP_021105693.1|1994022_1994337_+|hypothetical-protein
MHSARRGDWVQIHDIVLTPEQRTAHLPQDTQKVPFESWVKGFLDEESAHIGDRVSITTTCGRTTSGTLLAVNPGYDYGFGDATVPELLGIGPQARHIIKENDNA
>NZ_LT906441.1|WP_036957474.1|1994338_1995745_+|PLP-dependent-lyase/thiolase
MSYDAVMARNGEIMKKALGVDYSTYESGNIAFDYERLMGDTGLTLDDVRAAQRRVGVGDTPLLELRNLTALARAVSGPGLGARILVKDEQCNPSGSFKDRRASMSVLQAKQLGFPGVMSATSGNYGAAVASQAAMANLPCIIVQECYDSHKVGQPEILEKQRKCESLGAEVLQLSVGPELFYSYLKVLEETGFFNASLYSAFGIAGVETLGLEIVEQCQSLIGRAPDVVIATNAGGGNLTGTARGLRKAGASDTKVYGASVDLSGLHMASDHDFNLKSFTTGHTGFGVPYATNPDHSDVPRSAARPLRYMDGYLYVKQGEVFYMTELLAQLEGMERGPAGNTSLAAAFALAKTLPSDQAIVVQETEYTGAGKHPLAQLSFAKHNGIEVSLGDPETEVPGRTIVMPDHPSRLVTRWADLDRLRRSYVKQMVRHVKATSATEEDIQFLIDETQSDRDLVLAALRDNGVEV
>NZ_LT906441.1|WP_021104363.1|1995995_1997786_-|methionine--tRNA-ligase
MCANVLAAVAWPYANGPRHIGHVSGFGVPSDVFARFMRMSGHRVLMVSGSDCHGTAISVKADQMGLTAQQCAEKFHHIIAEDLQGLGLSYDLYTSTMTLNHAHVTQEIFTTLYKNGYLVKKSEMGAFEPSTGRTLPDRYIEGTCPICGYDDARGDQCDNCGRQLDPADLVEPRSKTTGAAPEFRETEHFFLDLPALAEELTRWINTRTDWRPNVLKFSHNLLEELRPRAITRDLDWGVRVPVEGWQDNPMKSIYVWFDAVIGYLSASIEWARLSGDPQAWKDFWQDPEALSYYFMGKDNIVFHSVIWPGILLGINGEGERGGAPSPEIGTLNLPTEVVSSEFLTMSGSKVSNSRGATIFVGDFLRDFGPDALRYFIAVAGPENQDTDFTWEEFIRRVNFELANEWGNLVNRSISMAHKNVGSIPPAGKLTDADRALLDESLKAFETVGDLLEHAKFKAAITEVMRVVSLANAYISDQEPWKLKDDPQRRSTVLHVALQVVNDCNTMFTPFLPHSAQKVFEALGGDGVWAAQPELVEVDDGGDTHPVLRGDYAREQAHWGRDEIEVGRPLAKPTPIFRKLDAKLAETGPEWAPISRD
>NZ_LT906441.1|WP_021104362.1|1998427_1999483_-|ribonuclease-HI-family-protein
MITAAADGSSLHNPGPAGWAWYIDDATWAAGGWPKGTNNMGELTAVLDLLRATRDAGEELTVLCDSQYAINCCTKWMAGWKRKGWRKADGKPVLNKEILQELDTELAGRQVHFQWVKGHAGHAMNEAADSRARAAATAYRDGTSVDHGPGFGHAPAAEAAAGGADDTQNVFCAPQRHSAGNVCGEDDQEAPCRAAAPTATQLEATSSRDVTSASAGDIPSIEPFQDGLFELDAPSALVSTLADLQSRLVDSNPACRQQAMVELLSDDFIGHAADGKVRSKARLIAMDRSIKSRTTTQIDILGITEPADGVALVRWRSRTGARAELHASLWRLSGQHGDGQWQIVFSQATAI
>NZ_LT906441.1|WP_081659075.1|2000013_2003139_-|Rne/Rng-family-ribonuclease
MTASGSAQSESTTELPNTGTVPEKSATRRHRAATRAAGAPTESSADESSASVPVTTAAGSGGAVVTSAAETVDLPRPPAGRRRSTRSAAAAEQASKEDANVTVKDFQPAVSAPAEAQEQLPVQPVSDHESGSGDSAADDLPDGDLGGEESESTSATSGESSTSETERSAPTRRARRRSTSRSRSRGTGSRAMTTASPQDDVVTPEQTGSADAEEHVTTETGSETTPATEADDLPRPPAGRRASRSATAAHEKTSTRARNKDTAVEETDSGAPESSPDTLNSTDSRRATSEESTPARRTRRRRSANRRVTEPKAESDFADIDAALTKAEEQAQSRKTAEQEADAEQRSTSDILDNLAAEIGGGEADGSARRTTRRRAARPSSSSRGTDSSRGTERVRKADRRSDAHDAEDHEDSAAAEHQSTGKTTSSTEDSSQTTESGEGTTRRRRRRGGRRRHPAEAESGADNSSSDKGNEENRSSDDGSEKSSSEPTKSNDADRSDHEGGSTRRRRRRRRRGEDTSGSDDDPNNVVIKVREPRSRRSVSDEVSGIEGSTRVEAKKQRRREGRAAGRRRNVVLTEAEFLARRESVDRKMVIRQSEEYSQLAVLEDGVLVEHYVDRASATSAIGNVYLGKVQSVLPSMEAAFVDIGRRRNAVIYAGEIEWEKYGEVGKEHRIEQVLKTGDPILVQVTKDPVGAKGARLTSHISLPGRYVVYSPDGKLSGISRKLFDSERKRLRKIVDATMPSEASVIVRTAAEGVSEEDLTRDINRLKAQWEVIERKAGTSHAPQMLYSEPDLTVRIIRDLFNEDFSELIVAGNGGSDDAYETIKAYVDHVAPSLEKRLTRWDTQSQGDLFQKYRIDEQVAKGLERKVFLPSGGSLVIDRTEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPANRELLVRRLIECLGRDRTRHQVSEVTSLGLVQMTRKKIGTGLAEAFTEECSSCGGRGYVRHDKPVNSQAPADGGERSARGRRTSGGRKSSKRKSQRKSHEN
>NZ_LT906441.1|WP_036957462.1|2004664_2005429_-|DUF2344-domain-containing-protein
MAHRNQRQPEQLAPPVQRMRLRYAKRSVARFTSHRDFARSFERVLLRARIPMALSSGFNPHPRISYANASPTGAASEAEYLEIALWEVCDPEMVKDALNAEMPTGMEVLEVVESDRVAWTEVLTASAWTVHVPHSTDPAAVSSAVDALLASPTWVVQRMTKSGLRDFDVRGALIGLGADGDLVRMMIRHQTPLVRPDDVMGALESQIDGFDRQECLFTRLYQGRVGLLEDGTADERGLKTALIDAFDGRAVQVW

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906441_6	6.4|1343360|32|NZ_LT906441|CRISPRCasFinder,CRT	1343360-1343391	32	NC_021086	Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence	50456-50487	0	1.0
NZ_LT906441_6	6.4|1343360|32|NZ_LT906441|CRISPRCasFinder,CRT	1343360-1343391	32	NZ_CP012356	Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence	50195-50226	0	1.0
NZ_LT906441_6	6.13|1343909|31|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343909-1343939	31	NC_021086	Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence	49277-49307	1	0.968
NZ_LT906441_6	6.13|1343909|31|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343909-1343939	31	NZ_CP012356	Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence	49016-49046	1	0.968
NZ_LT906441_5	5.1|454196|27|NZ_LT906441|CRISPRCasFinder	454196-454222	27	NZ_CP010801	Ralstonia mannitolilytica strain SN82F48 plasmid pRMAN01, complete sequence	138058-138084	5	0.815
NZ_LT906441_6	6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344396-1344427	32	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	417694-417725	6	0.812
NZ_LT906441_6	6.24|1344579|33|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344579-1344611	33	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1204366-1204398	6	0.818
NZ_LT906441_6	6.24|1344579|33|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344579-1344611	33	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1844868-1844900	6	0.818
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	MN062715	Gordonia phage Marteena, complete genome	44243-44274	6	0.812
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	MK433275	Gordonia phage EMsquaredA, complete genome	44243-44274	6	0.812
NZ_LT906441_1	1.1|227443|32|NZ_LT906441|CRISPRCasFinder	227443-227474	32	NZ_CP032350	Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence	168287-168318	7	0.781
NZ_LT906441_6	6.25|1344641|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344641-1344672	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2954290-2954321	7	0.781
NZ_LT906441_6	6.25|1344641|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344641-1344672	32	MG189906	Stenotrophomonas phage vB_SmaS_DLP_5, complete genome	29657-29688	7	0.781
NZ_LT906441_6	6.30|1344946|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344946-1344977	32	NC_017073	Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence	45758-45789	7	0.781
NZ_LT906441_1	1.1|227443|32|NZ_LT906441|CRISPRCasFinder	227443-227474	32	NZ_CP034911	Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence	404020-404051	8	0.75
NZ_LT906441_6	6.1|1343175|32|NZ_LT906441|CRISPRCasFinder,CRT	1343175-1343206	32	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	884417-884448	8	0.75
NZ_LT906441_6	6.1|1343175|32|NZ_LT906441|CRISPRCasFinder,CRT	1343175-1343206	32	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	143271-143302	8	0.75
NZ_LT906441_6	6.5|1343421|32|NZ_LT906441|CRISPRCasFinder,CRT	1343421-1343452	32	NZ_CP015437	Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence	19186-19217	8	0.75
NZ_LT906441_6	6.7|1343543|32|NZ_LT906441|CRISPRCasFinder,CRT	1343543-1343574	32	NC_048133	Aeromonas phage ZPAH7, complete genome	22535-22566	8	0.75
NZ_LT906441_6	6.7|1343543|32|NZ_LT906441|CRISPRCasFinder,CRT	1343543-1343574	32	MK330684	Aeromonas phage ZPAH7B, complete genome	21780-21811	8	0.75
NZ_LT906441_6	6.12|1343848|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343848-1343879	32	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	60967-60998	8	0.75
NZ_LT906441_6	6.12|1343848|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343848-1343879	32	NZ_CP022767	Ralstonia solanacearum strain T78 plasmid pRsT78, complete sequence	74968-74999	8	0.75
NZ_LT906441_6	6.14|1343969|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343969-1344000	32	MG550112	Haloferax tailed virus 1, complete genome	27803-27834	8	0.75
NZ_LT906441_6	6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344396-1344427	32	MN693715	Marine virus AFVG_250M870, complete genome	34684-34715	8	0.75
NZ_LT906441_6	6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344396-1344427	32	MN693913	Marine virus AFVG_250M869, complete genome	6674-6705	8	0.75
NZ_LT906441_6	6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344396-1344427	32	MN694594	Marine virus AFVG_250M868, complete genome	6665-6696	8	0.75
NZ_LT906441_6	6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344396-1344427	32	MN694810	Marine virus AFVG_250M867, complete genome	34719-34750	8	0.75
NZ_LT906441_6	6.5|1343421|32|NZ_LT906441|CRISPRCasFinder,CRT	1343421-1343452	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2363460-2363491	9	0.719
NZ_LT906441_6	6.9|1343665|32|NZ_LT906441|CRISPRCasFinder,CRT	1343665-1343696	32	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	155982-156013	9	0.719
NZ_LT906441_6	6.14|1343969|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343969-1344000	32	NZ_CP030354	Novosphingobium sp. P6W plasmid pP6W1, complete sequence	361525-361556	9	0.719
NZ_LT906441_6	6.14|1343969|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343969-1344000	32	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	436931-436962	9	0.719
NZ_LT906441_6	6.15|1344030|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344030-1344061	32	NZ_CP022194	Yangia pacifica strain YSBP01 plasmid unnamed4, complete sequence	59632-59663	9	0.719
NZ_LT906441_6	6.15|1344030|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344030-1344061	32	NZ_CP054622	Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence	227382-227413	9	0.719
NZ_LT906441_6	6.15|1344030|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344030-1344061	32	NZ_CP039651	Azospirillum sp. TSA2s plasmid p1	200355-200386	9	0.719
NZ_LT906441_6	6.17|1344152|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344152-1344183	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	1268911-1268942	9	0.719
NZ_LT906441_6	6.28|1344824|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344824-1344855	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	925896-925927	9	0.719
NZ_LT906441_6	6.29|1344885|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1344885-1344916	32	MH791406	UNVERIFIED: Pseudomonas phage PaSz-4, complete genome	16572-16603	9	0.719
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_LR134468	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence	18133-18164	9	0.719
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_CP015740	Shinella sp. HZN7 plasmid pShin-04, complete sequence	206781-206812	9	0.719
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	170513-170544	9	0.719
NZ_LT906441_8	8.2|1436336|30|NZ_LT906441|CRISPRCasFinder	1436336-1436365	30	NZ_CP010859	Marinovum algicola DG 898 plasmid pMaD4, complete sequence	30837-30866	9	0.7
NZ_LT906441_6	6.5|1343421|32|NZ_LT906441|CRISPRCasFinder,CRT	1343421-1343452	32	CP000662	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence	424924-424955	10	0.688
NZ_LT906441_6	6.12|1343848|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR	1343848-1343879	32	NZ_CP018468	Xanthomonas vesicatoria strain LM159 plasmid pLM159.1, complete sequence	130357-130388	10	0.688
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_KJ410765	Arthrobacter sp. 68b plasmid p2MP, complete sequence	100745-100776	10	0.688
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3611925-3611956	10	0.688
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_CP033583	Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence	252991-253022	10	0.688
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1533279-1533310	11	0.656
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1518362-1518393	11	0.656
NZ_LT906441_6	6.32|1343236|32|NZ_LT906441|CRT	1343236-1343267	32	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	1461416-1461447	11	0.656

1. spacer 6.4|1343360|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NC_021086 (Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gaatggctcgccgtggttgtattttgcttcca	CRISPR spacer
gaatggctcgccgtggttgtattttgcttcca	Protospacer
********************************

2. spacer 6.4|1343360|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NZ_CP012356 (Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence) position: , mismatch: 0, identity: 1.0

gaatggctcgccgtggttgtattttgcttcca	CRISPR spacer
gaatggctcgccgtggttgtattttgcttcca	Protospacer
********************************

3. spacer 6.13|1343909|31|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NC_021086 (Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.968

gttgacaca-ccccctcggcaggcgatctgat	CRISPR spacer
-ttgacacacccccctcggcaggcgatctgat	Protospacer
 ******** **********************

4. spacer 6.13|1343909|31|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012356 (Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.968

gttgacaca-ccccctcggcaggcgatctgat	CRISPR spacer
-ttgacacacccccctcggcaggcgatctgat	Protospacer
 ******** **********************

5. spacer 5.1|454196|27|NZ_LT906441|CRISPRCasFinder matches to NZ_CP010801 (Ralstonia mannitolilytica strain SN82F48 plasmid pRMAN01, complete sequence) position: , mismatch: 5, identity: 0.815

cctgac-accccaccctctgccgcatcc	CRISPR spacer
-gtgatgaccccaccctctgccgcatta	Protospacer
  ***. *******************. 

6. spacer 6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.812

ctggatgcccaacaggaacaggaggagacgac-	CRISPR spacer
gaggatgcctaacaggaacgggaggcg-cgact	Protospacer
  *******.*********.***** * **** 

7. spacer 6.24|1344579|33|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 6, identity: 0.818

-ggctgcggacatggaggcgggacgcctgtaccg	CRISPR spacer
cggccgc-accacggaggcggaacgcctgtaccg	Protospacer
 ***.** . **.********.************

8. spacer 6.24|1344579|33|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.818

-ggctgcggacatggaggcgggacgcctgtaccg	CRISPR spacer
cggccgc-accacggaggcggaacgcctgtaccg	Protospacer
 ***.** . **.********.************

9. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to MN062715 (Gordonia phage Marteena, complete genome) position: , mismatch: 6, identity: 0.812

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
cacaccacgacgtcgaaggcgatcgcggtccc	Protospacer
* ***** ******* ********** * .**

10. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to MK433275 (Gordonia phage EMsquaredA, complete genome) position: , mismatch: 6, identity: 0.812

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
cacaccacgacgtcgaaggcgatcgcggtccc	Protospacer
* ***** ******* ********** * .**

11. spacer 1.1|227443|32|NZ_LT906441|CRISPRCasFinder matches to NZ_CP032350 (Azospirillum brasilense strain MTCC4039 plasmid p5, complete sequence) position: , mismatch: 7, identity: 0.781

gttctctcatccgccgcttcaactctttgcgc	CRISPR spacer
gctctctcaggcgccgcttcaactcttcccag	Protospacer
*.*******  ****************. *. 

12. spacer 6.25|1344641|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 7, identity: 0.781

cgtcgggtcgtgaacgtcgggaagccgaaggg	CRISPR spacer
gggcgggtggggaacgtcgggaagccgatgac	Protospacer
 * ***** * ***************** *. 

13. spacer 6.25|1344641|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to MG189906 (Stenotrophomonas phage vB_SmaS_DLP_5, complete genome) position: , mismatch: 7, identity: 0.781

cgtcgggtcgtgaacgtcgggaagccgaaggg	CRISPR spacer
ggtgagttcgtgaacgtcggcaagcagaaggc	Protospacer
 ** .* ************* **** ***** 

14. spacer 6.30|1344946|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NC_017073 (Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC3, complete sequence) position: , mismatch: 7, identity: 0.781

ttgctgcgtgcatgttttcgatatccttttct	CRISPR spacer
cagcgggcagcatgttttcgatatacttttct	Protospacer
. ** *   *************** *******

15. spacer 1.1|227443|32|NZ_LT906441|CRISPRCasFinder matches to NZ_CP034911 (Ensifer alkalisoli strain YIC4027 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

gttctctcatccgccgcttcaactctttgcgc	CRISPR spacer
tctcctcgatccgtcgcttcaagtctttgcgc	Protospacer
 .**... *****.******** *********

16. spacer 6.1|1343175|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 8, identity: 0.75

tgcgaggcgttccggtggcaggccggacagaa	CRISPR spacer
ttcgaggcgtgccgggggcaggccggtctcgg	Protospacer
* ******** **** ********** *  ..

17. spacer 6.1|1343175|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

----tgcgaggcgttccggtggcaggccggacagaa	CRISPR spacer
cccttccg----gttccggcgccaggccggacagat	Protospacer
    * **    *******.* ************* 

18. spacer 6.5|1343421|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NZ_CP015437 (Anoxybacillus sp. B7M1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tttggtgacgatgacgcgatacgccgacggtg	CRISPR spacer
cttggtgacgatgacgagatgcgctaccgctc	Protospacer
.*************** ***.***.. ** * 

19. spacer 6.7|1343543|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NC_048133 (Aeromonas phage ZPAH7, complete genome) position: , mismatch: 8, identity: 0.75

--gttggccacgatgacgaacttagcggcgatgc	CRISPR spacer
cagcttgt--cgatgccgaactttgcggcgatgt	Protospacer
  *.* *.  ***** ******* *********.

20. spacer 6.7|1343543|32|NZ_LT906441|CRISPRCasFinder,CRT matches to MK330684 (Aeromonas phage ZPAH7B, complete genome) position: , mismatch: 8, identity: 0.75

--gttggccacgatgacgaacttagcggcgatgc	CRISPR spacer
cagcttgt--cgatgccgaactttgcggcgatgt	Protospacer
  *.* *.  ***** ******* *********.

21. spacer 6.12|1343848|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgaatgtcgacggctggcccggtggcccgg	CRISPR spacer
ggctcatgtcgtcggcaggcccggtggctggt	Protospacer
**.  ****** **** ***********. * 

22. spacer 6.12|1343848|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022767 (Ralstonia solanacearum strain T78 plasmid pRsT78, complete sequence) position: , mismatch: 8, identity: 0.75

ggtgaatgtcgacggctggcccggtggcccgg	CRISPR spacer
gctgccgagcggcggctggcccggaggcccgg	Protospacer
* **   . **.************ *******

23. spacer 6.14|1343969|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to MG550112 (Haloferax tailed virus 1, complete genome) position: , mismatch: 8, identity: 0.75

gagattatgccgccgatttcgacctggacgcg	CRISPR spacer
aaaagattgccgacgatttcgacatggacgcc	Protospacer
.*.*   ***** ********** ******* 

24. spacer 6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to MN693715 (Marine virus AFVG_250M870, complete genome) position: , mismatch: 8, identity: 0.75

ctggatgcccaacaggaacaggaggagacgac	CRISPR spacer
ctggaggcccagcaggaacaggagcaccagga	Protospacer
***** *****.************ *   *. 

25. spacer 6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to MN693913 (Marine virus AFVG_250M869, complete genome) position: , mismatch: 8, identity: 0.75

ctggatgcccaacaggaacaggaggagacgac	CRISPR spacer
ctggaggcccagcaggaacaggagcaccagga	Protospacer
***** *****.************ *   *. 

26. spacer 6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to MN694594 (Marine virus AFVG_250M868, complete genome) position: , mismatch: 8, identity: 0.75

ctggatgcccaacaggaacaggaggagacgac	CRISPR spacer
ctggaggcccagcaggaacaggagcaccagga	Protospacer
***** *****.************ *   *. 

27. spacer 6.21|1344396|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to MN694810 (Marine virus AFVG_250M867, complete genome) position: , mismatch: 8, identity: 0.75

ctggatgcccaacaggaacaggaggagacgac	CRISPR spacer
ctggaggcccagcaggaacaggagcaccagga	Protospacer
***** *****.************ *   *. 

28. spacer 6.5|1343421|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

tttggtgacgatgacgcgatacgccgacggtg	CRISPR spacer
agacctgccgatcacgcgatacgccgacggct	Protospacer
     ** **** *****************. 

29. spacer 6.9|1343665|32|NZ_LT906441|CRISPRCasFinder,CRT matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tcaccggcatgcatcatgtcgtcggatcgggc	CRISPR spacer
gcaccggcctgcttcatgtcgtcggcggcgaa	Protospacer
 ******* *** ************    *. 

30. spacer 6.14|1343969|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030354 (Novosphingobium sp. P6W plasmid pP6W1, complete sequence) position: , mismatch: 9, identity: 0.719

gagattatgccgccgatttcgacctggacgcg	CRISPR spacer
atggcgcggccgccgatttcgtcctcgacgcg	Protospacer
. *..   ************* *** ******

31. spacer 6.14|1343969|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 9, identity: 0.719

gagattatgccgccgatttcgacctggacgcg	CRISPR spacer
tgcaccatgccgccgatttcgacatcgacgaa	Protospacer
 . *..***************** * **** .

32. spacer 6.15|1344030|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022194 (Yangia pacifica strain YSBP01 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

cccgaggatctggtgattttcaccacaccgga	CRISPR spacer
cagaactctctggtgcttttcaccacgccggg	Protospacer
*  .*   ******* **********.****.

33. spacer 6.15|1344030|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054622 (Azospirillum oryzae strain KACC 14407 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.719

cccgaggatctggtgattttcaccacaccgga-----	CRISPR spacer
accgacgatctggagatttt-----caccggtggtcc	Protospacer
 **** ******* ******     ******      

34. spacer 6.15|1344030|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039651 (Azospirillum sp. TSA2s plasmid p1) position: , mismatch: 9, identity: 0.719

cccgaggatctggtgattttcaccacaccgga-----	CRISPR spacer
accgacgatctggagatttt-----caccggtggtcc	Protospacer
 **** ******* ******     ******      

35. spacer 6.17|1344152|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

agccctgccagtagttcggctgcctcggtgtc	CRISPR spacer
acctgctccagaagttcggcggcctcggtgcg	Protospacer
* *. . **** ******** *********. 

36. spacer 6.28|1344824|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tgaatccgtattcatcgaacgagcgtgcacga	CRISPR spacer
tgaatccgtattcgtcggacgagtacatccgc	Protospacer
*************.***.*****..... ** 

37. spacer 6.29|1344885|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to MH791406 (UNVERIFIED: Pseudomonas phage PaSz-4, complete genome) position: , mismatch: 9, identity: 0.719

ttgcccatgaggccagcgacaacctcaccacg	CRISPR spacer
atgcccacgaggccagcgaccaccggcgggcg	Protospacer
 ******.************ ***     .**

38. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_LR134468 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 26, complete sequence) position: , mismatch: 9, identity: 0.719

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
agtcccaggacctcgcaggcgatcgcccgcca	Protospacer
  . ******* ***.*********** *.* 

39. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_CP015740 (Shinella sp. HZN7 plasmid pShin-04, complete sequence) position: , mismatch: 9, identity: 0.719

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
atcaccacgacgtcgtaggcgctctcgatatc	Protospacer
 ****** ************* ** * .  .*

40. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 9, identity: 0.719

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
ggggccaggacgtcggaggcgatcaccagggc	Protospacer
   .*********** ********.**.*  *

41. spacer 8.2|1436336|30|NZ_LT906441|CRISPRCasFinder matches to NZ_CP010859 (Marinovum algicola DG 898 plasmid pMaD4, complete sequence) position: , mismatch: 9, identity: 0.7

aacgacgatcctggcccgtacgccccctgc	CRISPR spacer
gggaacgatcctggcccggacgcccttcgg	Protospacer
.. .************** ******...* 

42. spacer 6.5|1343421|32|NZ_LT906441|CRISPRCasFinder,CRT matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 10, identity: 0.688

tttggtgacgatgacgcgatacgccgacggtg	CRISPR spacer
agtggtgacgatgacgggataggccacttccg	Protospacer
  ************** **** ***. .  .*

43. spacer 6.12|1343848|32|NZ_LT906441|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018468 (Xanthomonas vesicatoria strain LM159 plasmid pLM159.1, complete sequence) position: , mismatch: 10, identity: 0.688

ggtgaatgtcgacggctggcccggtggcccgg	CRISPR spacer
acgcaatgtcggcggctgggccggtggtgcct	Protospacer
.   *******.******* *******. *  

44. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_KJ410765 (Arthrobacter sp. 68b plasmid p2MP, complete sequence) position: , mismatch: 10, identity: 0.688

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
gcgtccaggacgtcgcaggcaatcgccaagac	Protospacer
 .  ***********.****.******..  *

45. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
gcggtcaggccgacgtaggcgatcgccgcgca	Protospacer
 . ..**** ** ***************  * 

46. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_CP033583 (Streptomyces sp. ADI95-16 plasmid pADI95-16b, complete sequence) position: , mismatch: 10, identity: 0.688

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
gctgccaggacgtcgtgggcgagcgccagcgt	Protospacer
 ...************.***** ****.*. .

47. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.656

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
acgttcaggccgtcgttggcgatcgccgagta	Protospacer
 .  .**** ****** ***********. . 

48. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 11, identity: 0.656

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
acgttcaggccgtcgttggcgatcgccgagta	Protospacer
 .  .**** ****** ***********. . 

49. spacer 6.32|1343236|32|NZ_LT906441|CRT matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.656

ctcaccaggacgtcgtaggcgatcgccggtcc	CRISPR spacer
acgttcaggccgtcgttggcgatcgccgagta	Protospacer
 .  .**** ****** ***********. . 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1870214 : 1880212	11	Propionibacterium_phage(50.0%)	tRNA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_LT906441|1870214:1880212|DBSCAN-SWA
GATGCCCAGCATTATCCCATTCACCTATCAAGACCAGCCAGTGCGCGTCGTCACCATCGATGGAGAGCCGTGGTTCGTCCTTGCCGATCTGTGCAAGGTGCTCGACATCGCCGCTTCGGGCCGCCTTGCCGCACGACTCGACGAGGGTATGCGTCAGACGCACACCCTTGAGACGGCAGGCGGTCGCCAACGGATGACTATCGTCTACGAGGCTGGCATGTACGAGGTCGTCATCCGATCCGACAAACCCGAGGCCGCAGCGTTCCGCCGCTGGATCACCAGCGAAGTCCTCCCCTCGATCCGCAAACACGGCGGCTACCTGACACCTGAGAAGGCCGAGGAGATCATCTCCGACCCGGACGTCATCATCGAGCTGGCCCAGGCCGTCAAACGCGAAAAGTCAGCCCGTATTGCCATGGAATCCCTCGTCCATGAGCTCGAGCCCAAGGCTGACATGTACGACCGCTTCCTCGATGCCGACGGCACCTACTCGATAGGCAACGTCACCAAGATGGTCGGGCTCAGCCAGAACAAATTGTTCGACCGGCTTCGGAACTCGGGCGTCCTCATCGCCAAAGGGGCCATGCGCAACACCCCTTACCAGCGTTACATGCACCACTTCTCCGTCCGCCCTTACGACTTCGAGCGCTCCGACGGGACCAAAGGCACCAGCTACACCACTCGAGTGCAGCCATCTGGCATCCAGTTCATCTGCCGCAAGCTCGGTCTCCAACTCATTGACGACCAGGAGGCAGCCGCATGAGCACAGTCTTCACCGTTATCGCCGTCGTGTGCGCCCTGGTGTCCAGGGTTGGTGCCGGGCTGGCCATCGCCGCGATCGTCAAAGTTGTTCGCGACGATCGACGAGCGGAACACGAAGAGGCCGACCATCCGACAGACGCAACTCCAGATGGCCAGCCCCGGCTCGACCAAGACCCCGATGCAGCACGACCCGCCACGCCCCAGAGGGGTCAATCGTGACCGGCAGCGTCTCACCGTCTATCGAGACACGGAACCACGCGTCGGAGTTGGCGATGTCTGCGACAACCACCGGGGAACCGGTCGTGTTCACCAGGGTCCACGTGTCCGATCCGTTGCCGCGCGAGACCAGGTGCACCTCCAGTTCTGGCCGTGACAGCCGCTCGGCTATGGCGCGAACCTGTGCTGCCTGCTCGCGTGCCGCCCACGCCTGCGCCTCGGCTGCCTCCAGTGACCGTTGTGCCTCGTCGCGGATTCGTTCCGCCTCCTGTTTGGCGGCCCGTGAGACGTTGGCACGCCACCAGGCCACGCCGCCGCCGACAAGCGACACCGCAGCACATGCGGCACTGACTGCCGCTGCCACCACACCTGCATCCGTCACACATCCCATTGTTCCCGAAAGGAATCACCAATGACCATCGACGCCAAAACCCAGCAGGTCGTCATCTACGGCCACCCCTGGGACAAGGTCAATGAGTTCGCCACTGACGTCAAGCTCCTCGCCCGCCTGGGTGAGGCCGTCGACGCATGGCGCAACCGAGGGGAGGCGGCATCATGACCGGCACCCCGATGACACCCAGGCAGGCCGCCGAGGAGCTGGGCCTGCACGAAAAACCGTCCGCCAGATGTGCGCCACGCGCCGCATCGGCCACACCGTCACCTACGGCCCCAAAGGACAGGCCAGATACCACCTGTAACCGGGCGACATCGCCGCCTGGAAGTACACCCACCACGTCGAACCGAAAGCAGAACGATGATCACCTACACGCCCTTCGAGGCCTTCTGCATCAACGCCGCGTCGCTCGGCGGCCTGCTCATCCTCGCCGTCCTCGTCGCTACCGCAGCCGTGTGGTGGGAGGAGGACCACCGATGAGCACCAACCTCACCATCGACGGCGACACATCCACCACCCATCATCCCTGCCCCCGCTGTCATGGCACTGGGGTCGAGCCGAGGAGTCACGCATGACCACCGTCAAAGTAGAGTCCATCATCGCTGTCGCGCAGGAGCATGGGCGCGGGGCCAGCCTGCACGGGGCCAACCTGCACGGAGCCAACCTTCGCGGGGCCCGCTGGGACGGGTTCATCATCGACGGACTCCACCCCTACCGATGCATGCTCACCCCCACCCCCCATGGCTGGACGGCCACGATCGGCTGCTGGGATGGCACCGTCGACGATCTCCGGGAGCTCATCGCAGGCGACCAGTGGCCGGAAGCCACGGGCTGTCGCAGCCAGTCGCCCTGGTCGACGACTGGTGGTGGGTGAGCGTCCACGGGGCCGCAGCCGTCATCCTCGCCATCGCGGCTGTCCGCCCGTCGCATCTGTGGGGCATCGCCGGAGCCAGCCTCAGCGCCGCCGCGTGGGCGGTGTGGTCGGCCCTCGACCTGGCATGGTCGGTCGACACGCGACCGCCCTCCTCGCTCGTCGCCCCCATCCTCGGCCTGCTCGTGTGTACCCCGCTGGCCCTGCTGACCGCCGCCGCATGGAGCGAGCACGACCTAACCTAAGGAGGCCGCCATGGGAGGGCTGGCCTCCACGATCGTCACCGGGATCGCGACAGTCCTGGCAGCCCTACTCACAGCACTGCCAGCTCTGACGCACAGGTCCCGCAAAATCCAGCGCCACCAGGCCGCCCAGATCGACGCGCTCGAGGAATGGGCCTACGAGGCCCGCCGCGCGGCACGCCGCTACAACGCATCCCTACCCGGCGCAGTGGCGCCGATATCCCTGCCTAACCTGCCAGATTGGATGACCAATGCCGCCGACGAATGAGCTCGAAACGGAGCGCCGCCAACGTCAATCATCGGAGCGTCTCAACGTGTGGCAGGCCGTCATGCTGGCGCTCCTCGTGATCGTGGTGGCCGCGCTGACGGGCTGGGCTGGGCACATCCAGGGCCAGCGTGACGCCGCCGGATCGCAGGCCGCCAGCAACGCCGACGCCGCGAAAACGCTGGCCGGGCGCGTCAAAGCTGCGTGCGCGACCAGCATCGATGAGGGCCGGTCGCTACGGCAGGCGGGTCTGTGTGATGAGGCCAGCCGCGTCGAATCTCGGGTCCGTGACGCCCCCGCGCCAACCGTCGGAGCCCCCGGACCGGCGGGACCTATAGGGCCAGCCGGGAGGCCAGGGTCGCCGGGCCAGGACGGGCGGCAGGGCCGAGGCGGTAGGCCTGGCCGCGACGCGACAGGGGCACCGGGGTTCCCTGGCAGAGATGGCCAGCCCGGCAAGGACGCCACGGGTGCACCTGGCTCGAAGGGCGACCCCGGAGACGACGGGGCTAACGGAGACAACGGCCAGCCAGGCAAGGATGGTGCCCCCGGAGCGCCTGGAAGCGATGGGCAGGCTGGGCCAGCTGGACTAGCGGGAGCACCCGGACATGACGGCAAGGATGGAGCCGACGGCAAGGACGGTCGCGGCCTCGCCTCTCTCGCCTGCCATGACGGACACCTCGTCGCCACCCTCACCGACGGCACCACCTCGACCGTCACTGGGGCCACCGTATGCGCTACCCCAGACCCCTCCCCTACCCCGACAGCCACACCGACAGCCACACCGACCCCCTGAGAGGACGCCATGACATTCATCCAGGCCGCCCACCGTGGCGGCACTTCCAACACGCCGATCACCCGGCTGGTCATCCACGCCACCTGCCCCGATGTCGGCTTCCCGTCGGCATCGCGGGCAGGACGAGCAGTATCCACAGCGGAATATTTCGCGTCCACGTCGAGGTCAGCCTCGGCGCACTACGTATGCGACATCTCTACCACGGTGCAGTGCCTGTCCGAGGCAACGATCGGCTATCACGCGCCACCAAACGCCCACTCCATCGGCATTGAAATCTGCGCCGCCGGAGGCTCGCGCGCTTCATTTGAGAAGGCTTCTCACGCATACACCCGCGAGCAATGGCTCAGCCCGCAGGTATGGCCCGCCGTGGAGCGCGCCGCGATTCTCGCCCGCGACATCTGCCACCGACACCACATCCCCATCCGCCGCCTCTCCGTCGCGCAGGTGCGGGCAGGTGAGCGCGGAATCTGCGGCCACAACGAGGTGAGCGAGGCGTTCCACCAATCCGACCACGACGACCCCGGCCCCTATTTCCCGTGGAATGAATTTATTGCCGCCGTCCAAGGAAAAACCACCACACCAGAGGGAGAACTCAGCATGTCAGACGTAAACACCCTGACCAAGCTCATCAAGGCCAGCAACGACCAGCTTCACTACGACATTGGCGTCGTCCAGACGCAAAACGGGAACATCAAGAAGAAGATCGACAATCTGTCGTGGGTGAAGAACCCCGTCACCGGCAAGAAGTGGTCCACTAAGGATGCCCTGTGGTCCGTCTGGTATTACGTGCTGGAATGCCGCAACCGCATCCAGGCTATCGAGAACCGTATTTACGACCTTGAGAAGAAGGTGAAGTGAATGGGCAAGCATTTCTGGCGCGGGTGTTTTGAGCGCGCCCTCAAGACTTTTATTCAAACGTTCATCGCCACGCTCGGTGTCGGCGTTGGTGTTGTATACACGGTAGATAGCGTTCGCGGTCTCCCGTGGCTGTCGGCTCTCATCACGGCAGCAGTAGCGGCTATTCTGTCGGTCGCCACGTCACTGGGATCGCCGGGCTTCGTGGCTGGCAATCACCCTGACGCCCCGGCCATCGCGAGTGAGGATGCAGGACTCATCGAACCTCCCGCCGAGCCCGCCCTGGACGTCCCCGCCGATGACCCCGGCATGATTGAGCCCACCGACGACACCGCCCCGACGGACAGCAAGTCCGGCTCTGTCTCTGTCGCACGCCATGCAGAGGTGTGATTATGCCCGAACCGAAGCTCCCCGCCGAGTATGCATACGGATATGTGATTGCTCGGGCCATTCGGGCTGTCGCGGACTCCACGGCAGCCGATGACCCCTACCCCGATGGCCCTCCCGTCTCCCTCAACCGGGCGGTGATTTTCCGTCCGCTGGAGACGGGGCGCATCATCAAGGGGGCACCCCTGAGCCGTCGGTGCGGTCGCAGCACGAGACAATCACTGCCGATCTGGACGCGGACGGATACCTATCGCTCAACGGCCAGCGGGGCCTGTGGCTCTGGACGGGGACGTGGCAGGTGTCGTTTGCCGCCGATCTGGGCTGGACCCCGTATCAGATCACGGTCACCACGGATCACACAGTGGATCATCCGCTGGACCTGTGGACCGCCGCCGGGTGGCAGCCACCCTCACCCACCACACCAACAGTCACCATCCTTGTCCCGGCTACCGTCCACGACGGCGACGTGCTCATACGCAGCGGCAACGAGGTCACCGGTATCCCACAGGAAACTTTCCAGGGCCCACCTGGCCCTCCCGGACCCATCGGCGCGACGGGGCAGCCATCCACTCTCACCGGGACAGGCCCGGGCCGTCCCGACATCATCTCGACACTGGACGCTTCGGGCCGGGCGTGGGTGCAATCAGCCCCTGTCGGTGCGCTGTGGGCCTCAACTGACGGCGCGGAGGTTGGGGCGTGGCAGTGGCAGCGGACACCGAAAAGCTGGCGCGTCACATACGGCATGACCCCGTTTATCAGCTTCCAGGACACCCTGCTAGCACTCCTCCGCAACTTCGGTTTTACAGTAGACCCGATTCCCGGCATGAGAAATGGTGTCGTGCGACATAATAACCTCATCATGCTGGATATTGGTATCGACATTAAATCCAAACCCGATAGGGGCGAAAATCTGGACATTAAAAGCGCTATAGGGTACGGGTGGATATGGAAGAGCATGAACATTAACAATGCCAATGGCGTTCTCATTGATTTTTCAACCGCAAGAATTCATTGGGCCAATGGCATTTATGTCCGCATATGGGATACTGGCCACGTCAAGATGTCGCGAGTATTTCTTGAGATGGACGAGAGCATGACATGGCCAACATCCCTGACCAATCCAAACGCCCCCACATGACAGGAGAACCCATGACTGACGATATACCCGCATTCCTTACCTGGCCCAACCTGACGCCTGACGACCTCGACTATGTCTCCGGGGCAGGTGGGGCCATCCTTGGCGAATGTGTCGCCCGCCTCGCCGACATCACCGTCTGAGGAACAGTCACACAAGCCGCCCTCGACCACATTGCGTGGCCGGGGGCGGCTTTTTTGCTATCTCCGCCACACGGTGACGGTGCCGGTGCCAACGAATGATGCTCCCTCGGGGCCGCGAATGAACGGGCCGACCCACTGCAGGCGGCGGCTGCGCTTGGGGCCGTAGGATTGGTGTGTCCAGTGTCCCCGCACCACATGACGGGTCGTCAACCGCCTGCCGGGGGCTTCTTTCTTGCTGACAGAATGATCACCTCGCACTCCGAGGCAGAATGCTACCCACCGTAGCAATTCGCTCACTCGCATTGAGCGTTTCGTACGGTTCTCGTACGGTCGCATACAGGAGCAGATGCATCACCCCTAGTCACAGGCGTACGTCGTACGCTCGCAATCTCCCACCAGGGGACGCTTGACTCCGACCCATTCCACATCATGCGGGCATGAAAAGAGCCGCCCCACTAGGTGCAACACCCACCGAAACAGCCCTGACAAGGTGGTCGGGGCGACAGGACTCGAACCTGCGGTCTCCTGCTCCCAAAGCAGGCGCGCTAGCCACTACGCTACGCCCCGTTGACCTGCCCAGCTTACTGGATTGGACGCCGTAGCGCGAATTGCCAAGAGCCCAAGCTCCCAGACAGCCCACAGCTCATGGTTTCCGGACAGTCCAGCCGGGTCCGTCCCGAACGTGGTCTCTCACACCCTGCGAGGCCTGACCAGCGGGAAGGCAATCGTCTCACGGATGGATGCCCCGGTGAGCATCATGACGAGCCGGTCCAGTCCCATGCCCATGCCCCCCGACGGGGGCATCGCATATTCCAGTGCCTCCAGGAAGTCCTCGTCGAGTTCCATCGCCTCGGGATCACCACCAGCGGCTCGCAACGACTGGGCAGTGAATCGTTCCCGCTGGATCACCGGGTCGACGAGCTCGGTGTAGGCCGTGGCCACCTCCGAGCCCAGGACGATGAGGTCCCACTTCTCGGCAAGCCGTGGATCGTCACGGTGCTGACGAGTCAGCGGAGAGACCTCGGTGGGAAAGTCACAGTAGAACGTCGGCTCGACGGTGGTGCGTTCGCTGAGGTGCTCGTGCAGCTCCAGTACGACGTCACCGCGGGAGGCGGACGGCTTGACGGGAATGCCGAGCTTCTTGGCGTGGGCGACGAGTTGCTCCCGGGACGTGTCGGCACTCACCTCCTCACCCAGCGCCTGCGACAGTGCCTCGTTGACGGTGACGACTCGCCACGGTGCGGCCAGGTCGAACTCGTGACGCTTTGCCTGCCGATCAACCCCGCGGACCATCGTCGTGCCCAGTGCTGCGGTGGCAGCACGACGAATCATCTGGGCAGTGAGTTCACGCATCTGGACATAATCACCATATGCCTGGTATGCCTCGAGCATGGTGAACTCCGGGTTGTGGGTGGCGTCGGCCCCTTCGTTGCGGAAATTGCGTCCGATCTCGAACACCCTGCCCACACCGCCGACCATGAGTCGCTTGAGGTACAGCTCCGGGGCAATACGCAGGTACAGATCGGTGTCGTAGGCATTGATGTGGGTGCGGAACGGCCGGGCATTCGCCCCGCCGTGAATGGTTTGCAGAATCGGGGTCTCGACCTCGAGGAAGTCATGGGAGAGCAAGGTCTCCCGTACTGCCCGAATCGCCCGGGACCGTGCCACGAGCTGATCGCGAGAGCTCGGGTTGACGATGAGGTCGAGGTAGCGGCGTCGTACCTTGGACTCGGGGTCCGTGAGACCGTCACGCCGGTTGGGCAGTGGACGCAGCGACTTGGCCGAGACCTGCCAGTGCTCGGCCAACAGGCTCGTCGTGCCATTGCGTGACCTGCCGATCGTCCCGGAGACGACGAGATGGTCTCCCAAGGAGAGCTGGTTGCGCAGTCGTCGCATGGATCGAGCGCCCAGGGCCCTTTCCTCAAGCAACACCTGACACTGCCCCGACCAGTCGGCCATGTCGCAGAAGACCACTCCTCCGTGGTCGCGCGTCGCCACGACTCGGCCACTGAGGCTCATCTGCTCACCCATCGCCGCATGCACCACATCGCCCGGGGCATGGTCGGGGGTGCAGTCGGGAGGATAGGGCTGGACGCCGGCATCAAGCATGTGCTGGCGAGTCGCCATCCGTACCCGCATCTGCTCGGGCAGCCGACGCTGCGGCAGTGATGGCGCCTCGGCTCGGGAGCTCAGGAAGGCAGCAATCTCGGGATGTTCCTCGGCACGGTGGATGGGTTGTTCGGGCGAGACACCCCGGTAGAGCCAGCGCGGAATGTCGAGTTGTCCCTCGGCAATGCCCATGGCCAGCCCCACCTGTGCCAGATCTGCCGTCACCGGGAAGACGAGGTACCGAGGCTGCCAACTGGGCAGGTACTTGACGTTGGAGTGGTAGAGCTGTTCGATCTGGAACCACCGTGACGCCGTACCGACCAGCCGGCGATTGAGACGATGCACCATGAGGGCGCCGACCTGGTCACCCTGTTCGATCATCTCGCGCAGCACGGCGAAGTTGAGTGAGACTCGGTGAATGCCCATCTCACGCCCAGCAGCCATGAGACCGGCGACCATGAGTTCGGTGACGCCATTGTCGGCCTTCTGCAGATCACGTCGCATGACGTCGAGACTGAGCCCGTCGGGGCCCCAGGGCACGAAGGAGAGCAGCGCTGCAGTGCGTCCTGCCATCGGGCCGTCCACCGGGTACAACGCCTCGACCATCACCGAACGTCCGTCCAACGGGTCCCCCAGTCGGGACAGGGCCATGGAGAATCCACGTTCATCGCCGTTGCGACGCCACAGGTCGGCCAGGGCGATGAGGTGGGCGAGTTCCTGCGGGTCGATCTCGTCATGACGTCGCACCCGAGTCGTGTAGCCAGCTCGGCGCAACCGGTTGACGCTGGTGCGCACCGATTTCATCTCCGGAGCTTCCAGGGTGAAACTCTGTGGCGACAAGATGGCCTCGTCGCCGATGCGCACTGCCCGCAGGCCCGCCCGCTGCCATGCAAGGGTGCCCTGTTCGGAGGTACCCAGCACGGCAGGCGTCCATCCGTTGGAATGAGCCATGTCCATGAAGGCCGAAATTGCCCCAGACCACTGTTCTCGCGGTCCGATGGGGTCCCCGGAGGCCAAGGCCACGCCCAGCTCGGCACGGTAGCAGATCGCTGCCCGGTGATTCTCGGAGAAGATGGCCGCCTTGTCACGCCGCAACGAGAAGTACCCCAGCGAGTCTGCCGGGTTCTGTGCCAGCAGACGACGCAGCTCCAGTTCCTCGTCGATGTCGATGAATCTGATGTCGTGCTGGGACCGCATGAGGACGATGAGCGCCGCAACCACTGCCACGGCCATGAGGAAGCTCACGATGCGGAACAGCCATCCGGGCATCGTCGCGTCCACTGGGACAATGCCGGGAATGTTGGTGAGATGTTCGAGCAGGGTGAGCAGCCGGGACGCGGGACTGTCGGTGACACCTGCTGCCGAGCTCATGGCCCACCCGGCTGCGAGCGAGACGAGGACACCGACGAGGGCGACGAGTACCGCCCGGTTGAAGTTTCGCCTGGCCACCCGGGCCACGAAATCACGTCGGTCGGCGATGAGCAGGCAGAGTATGGCGCCAATGCTCACCACATTGAACAGGTACTCGGCGAGACAGTAGTCGGACACGTAGTCCGTGGGCCGTCCGGAGGTCACCTCGATGACGAGGGCAGCGACGTAACCCCAGGTGATGAGCCAGCGCACCAAGAAACCCACCACGCACACCCACCAGGCGATTCTCCTGCGTTGCTTGAGGGAGAACGAGAAGATGACGAGCAGAACAGCCGTCAACCAGCCCGATCCTTCGATGGGGAACACGAGAATCGTGAATGCCCGAACGAGCCCGTCAAGCCACCAGGTTCGGCGGAAGAGCAACGCGAGGATCAACAGTGCAGCCCCGACACCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_LT906441|1870214:1880212|1872711_1872966_+|WP_065860520.1|DBSCAN-SWA
MGGLASTIVTGIATVLAALLTALPALTHRSRKIQRHQAAQIDALEEWAYEARRAARRYNASLPGAVAPISLPNLPDWMTNAADE
>NZ_LT906441|1870214:1880212|1872949_1873756_+|WP_095141019.1|DBSCAN-SWA
MPPTNELETERRQRQSSERLNVWQAVMLALLVIVVAALTGWAGHIQGQRDAAGSQAASNADAAKTLAGRVKAACATSIDEGRSLRQAGLCDEASRVESRVRDAPAPTVGAPGPAGPIGPAGRPGSPGQDGRQGRGGRPGRDATGAPGFPGRDGQPGKDATGAPGSKGDPGDDGANGDNGQPGKDGAPGAPGSDGQAGPAGLAGAPGHDGKDGADGKDGRGLASLACHDGHLVATLTDGTTSTVTGATVCATPDPSPTPTATPTATPTP
>NZ_LT906441|1870214:1880212|1871054_1871573_-|WP_157738766.1|DBSCAN-SWA
MTDAGVVAAAVSAACAAVSLVGGGVAWWRANVSRAAKQEAERIRDEAQRSLEAAEAQAWAAREQAAQVRAIAERLSRPELEVHLVSRGNGSDTWTLVNTTGSPVVVADIANSDAWFRVSIDGETLPVTIDPSGAWRVVLHRGLGRAGAGHLELRLSDGRPLRVPLVDRREQL
>NZ_LT906441|1870214:1880212|1870214_1870976_+|WP_021104639.1|DBSCAN-SWA
MPSIIPFTYQDQPVRVVTIDGEPWFVLADLCKVLDIAASGRLAARLDEGMRQTHTLETAGGRQRMTIVYEAGMYEVVIRSDKPEAAAFRRWITSEVLPSIRKHGGYLTPEKAEEIISDPDVIIELAQAVKREKSARIAMESLVHELEPKADMYDRFLDADGTYSIGNVTKMVGLSQNKLFDRLRNSGVLIAKGAMRNTPYQRYMHHFSVRPYDFERSDGTKGTSYTTRVQPSGIQFICRKLGLQLIDDQEAAA
>NZ_LT906441|1870214:1880212|1876966_1880212_-|WP_065860517.1|tRNA|DBSCAN-SWA
MGVGAALLILALLFRRTWWLDGLVRAFTILVFPIEGSGWLTAVLLVIFSFSLKQRRRIAWWVCVVGFLVRWLITWGYVAALVIEVTSGRPTDYVSDYCLAEYLFNVVSIGAILCLLIADRRDFVARVARRNFNRAVLVALVGVLVSLAAGWAMSSAAGVTDSPASRLLTLLEHLTNIPGIVPVDATMPGWLFRIVSFLMAVAVVAALIVLMRSQHDIRFIDIDEELELRRLLAQNPADSLGYFSLRRDKAAIFSENHRAAICYRAELGVALASGDPIGPREQWSGAISAFMDMAHSNGWTPAVLGTSEQGTLAWQRAGLRAVRIGDEAILSPQSFTLEAPEMKSVRTSVNRLRRAGYTTRVRRHDEIDPQELAHLIALADLWRRNGDERGFSMALSRLGDPLDGRSVMVEALYPVDGPMAGRTAALLSFVPWGPDGLSLDVMRRDLQKADNGVTELMVAGLMAAGREMGIHRVSLNFAVLREMIEQGDQVGALMVHRLNRRLVGTASRWFQIEQLYHSNVKYLPSWQPRYLVFPVTADLAQVGLAMGIAEGQLDIPRWLYRGVSPEQPIHRAEEHPEIAAFLSSRAEAPSLPQRRLPEQMRVRMATRQHMLDAGVQPYPPDCTPDHAPGDVVHAAMGEQMSLSGRVVATRDHGGVVFCDMADWSGQCQVLLEERALGARSMRRLRNQLSLGDHLVVSGTIGRSRNGTTSLLAEHWQVSAKSLRPLPNRRDGLTDPESKVRRRYLDLIVNPSSRDQLVARSRAIRAVRETLLSHDFLEVETPILQTIHGGANARPFRTHINAYDTDLYLRIAPELYLKRLMVGGVGRVFEIGRNFRNEGADATHNPEFTMLEAYQAYGDYVQMRELTAQMIRRAATAALGTTMVRGVDRQAKRHEFDLAAPWRVVTVNEALSQALGEEVSADTSREQLVAHAKKLGIPVKPSASRGDVVLELHEHLSERTTVEPTFYCDFPTEVSPLTRQHRDDPRLAEKWDLIVLGSEVATAYTELVDPVIQRERFTAQSLRAAGGDPEAMELDEDFLEALEYAMPPSGGMGMGLDRLVMMLTGASIRETIAFPLVRPRRV
>NZ_LT906441|1870214:1880212|1874614_1875001_+|WP_021104631.1|DBSCAN-SWA
MGKHFWRGCFERALKTFIQTFIATLGVGVGVVYTVDSVRGLPWLSALITAAVAAILSVATSLGSPGFVAGNHPDAPAIASEDAGLIEPPAEPALDVPADDPGMIEPTDDTAPTDSKSGSVSVARHAEV
>NZ_LT906441|1870214:1880212|1872156_1872459_+|WP_065860521.1|DBSCAN-SWA
MTTVKVESIIAVAQEHGRGASLHGANLHGANLRGARWDGFIIDGLHPYRCMLTPTPHGWTATIGCWDGTVDDLRELIAGDQWPEATGCRSQSPWSTTGGG
>NZ_LT906441|1870214:1880212|1872455_1872701_+|WP_021104635.1|DBSCAN-SWA
MSVHGAAAVILAIAAVRPSHLWGIAGASLSAAAWAVWSALDLAWSVDTRPPSSLVAPILGLLVCTPLALLTAAAWSEHDLT
>NZ_LT906441|1870214:1880212|1875296_1876136_+|WP_157738770.1|DBSCAN-SWA
MSFAADLGWTPYQITVTTDHTVDHPLDLWTAAGWQPPSPTTPTVTILVPATVHDGDVLIRSGNEVTGIPQETFQGPPGPPGPIGATGQPSTLTGTGPGRPDIISTLDASGRAWVQSAPVGALWASTDGAEVGAWQWQRTPKSWRVTYGMTPFISFQDTLLALLRNFGFTVDPIPGMRNGVVRHNNLIMLDIGIDIKSKPDRGENLDIKSAIGYGWIWKSMNINNANGVLIDFSTARIHWANGIYVRIWDTGHVKMSRVFLEMDESMTWPTSLTNPNAPT
>NZ_LT906441|1870214:1880212|1873765_1874614_+|WP_065860519.1|DBSCAN-SWA
MTFIQAAHRGGTSNTPITRLVIHATCPDVGFPSASRAGRAVSTAEYFASTSRSASAHYVCDISTTVQCLSEATIGYHAPPNAHSIGIEICAAGGSRASFEKASHAYTREQWLSPQVWPAVERAAILARDICHRHHIPIRRLSVAQVRAGERGICGHNEVSEAFHQSDHDDPGPYFPWNEFIAAVQGKTTTPEGELSMSDVNTLTKLIKASNDQLHYDIGVVQTQNGNIKKKIDNLSWVKNPVTGKKWSTKDALWSVWYYVLECRNRIQAIENRIYDLEKKVK
>NZ_LT906441|1870214:1880212|1871603_1871750_+|WP_157738768.1|DBSCAN-SWA
MTIDAKTQQVVIYGHPWDKVNEFATDVKLLARLGEAVDAWRNRGEAAS

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021104639.1|1870214_1870976_+	phage antirepressor KilAC domain-containing protein	A7IY79	Corynebacterium_phage	9.3e-49	41.7
WP_157738766.1|1871054_1871573_-	hypothetical protein	NA	NA	NA	NA
WP_157738768.1|1871603_1871750_+	hypothetical protein	NA	NA	NA	NA
WP_065860521.1|1872156_1872459_+	pentapeptide repeat-containing protein	A0A2H4P8Q0	Corynebacterium_phage	2.3e-11	67.4
WP_021104635.1|1872455_1872701_+	hypothetical protein	NA	NA	NA	NA
WP_065860520.1|1872711_1872966_+	hypothetical protein	A0A2D1GGK5	Propionibacterium_phage	8.3e-10	47.3
WP_095141019.1|1872949_1873756_+	collagen-like protein	NA	NA	NA	NA
WP_065860519.1|1873765_1874614_+	N-acetylmuramoyl-L-alanine amidase	A0A0H4IRN8	Propionibacterium_phage	2.6e-108	64.7
WP_021104631.1|1874614_1875001_+	hypothetical protein	A0A161C4G2	Propionibacterium_phage	3.1e-24	67.0
WP_157738770.1|1875296_1876136_+	hypothetical protein	NA	NA	NA	NA
WP_065860517.1|1876966_1880212_-|tRNA	bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX	A0A2K9KZX5	Tupanvirus	3.0e-72	36.6