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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT906447 Staphylococcus piscifermentans strain NCTC13836 chromosome 1 2 crisprs csa3,WYL,cas14j,c2c9_V-U4,DEDDh,cas3,DinG,cas2,cas1,cas9 0 8 5 0

Results visualization

1. NZ_LT906447
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906447_1 1840076-1841022 TypeII NA
14 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906447_2 1904211-1904308 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT906447_1 1.24|1840762|29|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840762-1840790 29 MK504442 Lactobacillus phage 3-SAC12, complete genome 32308-32336 5 0.828
NZ_LT906447_1 1.16|1840236|29|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840236-1840264 29 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 241805-241833 6 0.793
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MN694527 Marine virus AFVG_250M568, complete genome 22929-22958 6 0.8
NZ_LT906447_1 1.18|1840366|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840366-1840395 30 NZ_AP017961 Synechococcus sp. NIES-970 plasmid plasmid2 DNA, complete sequence 57001-57030 7 0.767
NZ_LT906447_1 1.25|1840827|29|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840827-1840855 29 MK016664 Synechococcus phage S-B68, complete genome 105703-105731 7 0.759
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 NZ_CP015351 Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence 139944-139973 7 0.767
NZ_LT906447_1 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840564-1840593 30 MT822286 Erwinia phage pEp_SNUABM_10, complete genome 23777-23806 8 0.733
NZ_LT906447_1 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840564-1840593 30 MT822284 Erwinia phage pEp_SNUABM_03, complete genome 21597-21626 8 0.733
NZ_LT906447_1 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840564-1840593 30 MT822287 Erwinia phage pEp_SNUABM_11, complete genome 23775-23804 8 0.733
NZ_LT906447_1 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840564-1840593 30 MN184885 Erwinia phage pEp_SNUABM_09, complete genome 23782-23811 8 0.733
NZ_LT906447_1 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840564-1840593 30 MT822285 Erwinia phage pEp_SNUABM_04, complete genome 23782-23811 8 0.733
NZ_LT906447_1 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840564-1840593 30 MN855773 Siphoviridae sp. isolate 219, complete genome 39393-39422 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250021 Prevotella phage Lak-B2, complete genome 16677-16706 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250024 Prevotella phage Lak-B5, complete genome 15743-15772 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250028 Prevotella phage Lak-B9, complete genome 16656-16685 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250023 Prevotella phage Lak-B4, complete genome 16677-16706 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250025 Prevotella phage Lak-B6, complete genome 15712-15741 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250022 Prevotella phage Lak-B3, complete genome 15745-15774 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250027 Prevotella phage Lak-B8, complete genome 16677-16706 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250026 Prevotella phage Lak-B7, complete genome 16677-16706 8 0.733
NZ_LT906447_1 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder 1840957-1840986 30 MK250020 Prevotella phage Lak-B1, complete genome 16636-16665 8 0.733
NZ_LT906447_1 1.1|1840107|33|NZ_LT906447|CRT 1840107-1840139 33 NC_015417 Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence 46690-46722 9 0.727
NZ_LT906447_1 1.3|1840236|34|NZ_LT906447|CRT 1840236-1840269 34 NZ_CP013110 Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence 241800-241833 10 0.706

1. spacer 1.24|1840762|29|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK504442 (Lactobacillus phage 3-SAC12, complete genome) position: , mismatch: 5, identity: 0.828

attctcacatggtcgaaaatattttcaac	CRISPR spacer
attcacaaatggtcgaaaatattcagaac	Protospacer
**** ** ***************.  ***

2. spacer 1.16|1840236|29|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.793

aaatcattatcaataccgcgtatcgctaa	CRISPR spacer
caatcattatcaatcccgcgcatcgcggc	Protospacer
 ************* *****.***** . 

3. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MN694527 (Marine virus AFVG_250M568, complete genome) position: , mismatch: 6, identity: 0.8

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
gaaggtatatatattttagaagttattgat	Protospacer
.*****.**************.**.* * *

4. spacer 1.18|1840366|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to NZ_AP017961 (Synechococcus sp. NIES-970 plasmid plasmid2 DNA, complete sequence) position: , mismatch: 7, identity: 0.767

tcgccaatcgcacccgaaattactaacacg	CRISPR spacer
gcgccaatcgaacccgaaatttctagaata	Protospacer
 ********* ********** ***. *..

5. spacer 1.25|1840827|29|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK016664 (Synechococcus phage S-B68, complete genome) position: , mismatch: 7, identity: 0.759

ttggcggtatcagtaaaggcattggcgga	CRISPR spacer
tgttcggcatcagtaaaggcattggtgtc	Protospacer
*   ***.*****************.*  

6. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to NZ_CP015351 (Bacillus thuringiensis strain MYBT18246 plasmid p150790, complete sequence) position: , mismatch: 7, identity: 0.767

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
gaaggtgtttatattttagatattcttatg	Protospacer
.******* *********** *** * .* 

7. spacer 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MT822286 (Erwinia phage pEp_SNUABM_10, complete genome) position: , mismatch: 8, identity: 0.733

attgcttttcgtttatcagattcaggcact	CRISPR spacer
cgcgctttgcgtttatcagattcagtctga	Protospacer
  .***** **************** *   

8. spacer 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MT822284 (Erwinia phage pEp_SNUABM_03, complete genome) position: , mismatch: 8, identity: 0.733

attgcttttcgtttatcagattcaggcact	CRISPR spacer
cgcgctttgcgtttatcagattcagtctga	Protospacer
  .***** **************** *   

9. spacer 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MT822287 (Erwinia phage pEp_SNUABM_11, complete genome) position: , mismatch: 8, identity: 0.733

attgcttttcgtttatcagattcaggcact	CRISPR spacer
cgcgctttgcgtttatcagattcagtctga	Protospacer
  .***** **************** *   

10. spacer 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MN184885 (Erwinia phage pEp_SNUABM_09, complete genome) position: , mismatch: 8, identity: 0.733

attgcttttcgtttatcagattcaggcact	CRISPR spacer
cgcgctttgcgtttatcagattcagtctga	Protospacer
  .***** **************** *   

11. spacer 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MT822285 (Erwinia phage pEp_SNUABM_04, complete genome) position: , mismatch: 8, identity: 0.733

attgcttttcgtttatcagattcaggcact	CRISPR spacer
cgcgctttgcgtttatcagattcagtctga	Protospacer
  .***** **************** *   

12. spacer 1.21|1840564|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MN855773 (Siphoviridae sp. isolate 219, complete genome) position: , mismatch: 8, identity: 0.733

attgcttttcgtttatcagattcaggcact	CRISPR spacer
cccggtgttcgtctatcagattcaggcaga	Protospacer
 ..* * *****.***************  

13. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaatttaaaag	Protospacer
*** ***********.********  ..  

14. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaatttaaaag	Protospacer
*** ***********.********  ..  

15. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaattaaaaag	Protospacer
*** ***********.********. ..  

16. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaatttaaaag	Protospacer
*** ***********.********  ..  

17. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaattaaaaag	Protospacer
*** ***********.********. ..  

18. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaattaaaaag	Protospacer
*** ***********.********. ..  

19. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaattaaaaag	Protospacer
*** ***********.********. ..  

20. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaattaaaaag	Protospacer
*** ***********.********. ..  

21. spacer 1.27|1840957|30|NZ_LT906447|PILER-CR,CRISPRCasFinder matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 8, identity: 0.733

aaaggtgtatatattttagaaattgtggtt	CRISPR spacer
aaatgtgtatatattctagaaattaaaaag	Protospacer
*** ***********.********. ..  

22. spacer 1.1|1840107|33|NZ_LT906447|CRT matches to NC_015417 (Clostridium botulinum BKT015925 plasmid p1BKT015925, complete sequence) position: , mismatch: 9, identity: 0.727

cgtttccttgttagattcttaacattctgttct	CRISPR spacer
ttcttacttattagattcttaacattctctatc	Protospacer
. .** ***.****************** * ..

23. spacer 1.3|1840236|34|NZ_LT906447|CRT matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 10, identity: 0.706

aaatcattatcaataccgcgtatcgctaacttct	CRISPR spacer
caatcattatcaatcccgcgcatcgcggccaaga	Protospacer
 ************* *****.***** . *    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 669959 : 702690 29 Enterobacteria_phage(33.33%) protease,holin NA
DBSCAN-SWA_2 1216112 : 1245788 34 Staphylococcus_phage(87.5%) NA NA
DBSCAN-SWA_3 1497817 : 1505674 8 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 1956608 : 1967595 11 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 2226342 : 2239331 10 uncultured_Caudovirales_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage