CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906479	Serratia ficaria strain NCTC12148 chromosome 1	0 crisprs	DEDDh,DinG,csa3,cas3,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1272383 : 1284505

Morganella_phage(22.22%)

integrase,tRNA

attL 1264322:1264335|attR 1282644:1282657

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1264322:1264335	attL	NA	NA	NA	NA
WP_061799444.1\|1272383_1273769_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	4.3e-44	34.4
WP_061799446.1\|1273830_1274043_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_095096107.1\|1274053_1274920_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.9e-30	33.7
WP_167387235.1\|1275128_1275338_+	hypothetical protein	NA	NA	NA	NA
WP_095096109.1\|1275763_1276978_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	8.0e-135	58.0
WP_095096112.1\|1277123_1278191_+	hypothetical protein	NA	NA	NA	NA
WP_095096117.1\|1278335_1278542_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	5.3e-07	47.2
WP_095096119.1\|1278541_1278964_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	6.1e-26	56.0
WP_095096122.1\|1278978_1279830_+	antA/AntB antirepressor family protein	A0A1U9AJ93	Stx1_converting_phage	6.4e-22	44.5
WP_167387236.1\|1279816_1280731_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_095096131.1\|1280723_1280915_+	hypothetical protein	NA	NA	NA	NA
WP_095096134.1\|1280914_1281148_+	hypothetical protein	NA	NA	NA	NA
WP_095096137.1\|1281144_1283268_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	2.9e-201	60.0
1282644:1282657	attR	NA	NA	NA	NA
WP_095096141.1\|1283511_1283742_+	hypothetical protein	A0A1P8DTG1	Proteus_phage	1.2e-15	56.7
WP_095096144.1\|1284163_1284505_+	DUF3024 domain-containing protein	E7C9Q9	Salmonella_phage	4.2e-33	57.5

DBSCAN-SWA_2

1874181 : 1942145

Bacillus_phage(20.0%)

plate,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061798028.1\|1874181_1875582_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	1.7e-80	35.8
WP_061798027.1\|1875794_1877000_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_095100087.1\|1877255_1878956_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.4e-20	37.3
WP_061798026.1\|1879292_1881911_+	aminopeptidase N	NA	NA	NA	NA
WP_061798025.1\|1881958_1882732_-	aliphatic sulfonates ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.5e-27	37.1
WP_095096808.1\|1882728_1883523_-	aliphatic sulfonate ABC transporter permease SsuC	NA	NA	NA	NA
WP_061798022.1\|1883534_1884680_-	FMNH2-dependent alkanesulfonate monooxygenase	NA	NA	NA	NA
WP_095096811.1\|1884696_1885659_-	sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_061798020.1\|1885683_1886262_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
WP_095096814.1\|1886520_1887531_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_061798018.1\|1887707_1888259_+	cell division protein ZapC	NA	NA	NA	NA
WP_095096817.1\|1888265_1889369_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_061798015.1\|1889436_1891593_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_095096820.1\|1891598_1893503_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.4e-47	28.1
WP_161990683.1\|1893577_1894894_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_095096823.1\|1894880_1896527_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_095096826.1\|1896523_1897084_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_004928150.1\|1897355_1897526_+	ribosome modulation factor	NA	NA	NA	NA
WP_095096829.1\|1897591_1898866_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_061798007.1\|1898862_1899390_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_061798005.1\|1899517_1900036_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_061798004.1\|1900104_1901877_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_061798003.1\|1902065_1902524_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_061798002.1\|1902624_1903701_-	porin OmpA	NA	NA	NA	NA
WP_061798001.1\|1904059_1904566_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_061797999.1\|1904798_1905461_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_095096832.1\|1905457_1907593_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_061797997.1\|1907619_1908072_-	YccF domain-containing protein	NA	NA	NA	NA
WP_095096835.1\|1908238_1910293_+	DNA helicase IV	A7KV33	Bacillus_phage	2.2e-15	26.5
WP_061798181.1\|1910325_1910784_-	methylglyoxal synthase	NA	NA	NA	NA
WP_061797995.1\|1910906_1911572_-	DUF2057 family protein	NA	NA	NA	NA
WP_095096838.1\|1911825_1912239_+	CoA-binding protein	NA	NA	NA	NA
WP_061797992.1\|1912296_1912614_-	heat shock protein HspQ	NA	NA	NA	NA
WP_061797991.1\|1912675_1913866_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	W6LLI2	Streptococcus_phage	5.4e-27	26.0
WP_061797990.1\|1913956_1914235_+	acylphosphatase	NA	NA	NA	NA
WP_061797989.1\|1914239_1914569_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_061797988.1\|1914679_1915339_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-41	48.8
WP_095096841.1\|1916587_1917085_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_095096844.1\|1917117_1918665_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_061797985.1\|1918680_1920021_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_061797984.1\|1920017_1920707_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_095096847.1\|1920703_1922401_+	OmpA family protein	NA	NA	NA	NA
WP_061797982.1\|1922416_1922908_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_095096850.1\|1923079_1925734_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.7e-97	33.1
WP_095096853.1\|1925730_1928226_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	1.5e-18	32.9
WP_095100093.1\|1928632_1929679_+	hypothetical protein	NA	NA	NA	NA
WP_095096856.1\|1929668_1931645_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	6.0e-63	32.9
WP_095096859.1\|1931646_1931910_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_095096862.1\|1931909_1933343_+	hypothetical protein	NA	NA	NA	NA
WP_095096865.1\|1933348_1936750_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_095096868.1\|1936749_1938342_+	type VI secretion system protein TssA	NA	NA	NA	NA
WP_095096871.1\|1938369_1940124_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_095096874.1\|1940087_1941173_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_095096877.1\|1941150_1941696_+	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_061798202.1\|1941695_1942145_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

4841678 : 4850613

environmental_Halophage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061798918.1\|4841678_4843757_+	hypothetical protein	H9YQA8	environmental_Halophage	5.9e-53	71.9
WP_061798920.1\|4843797_4845015_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	6.5e-28	25.2
WP_095099604.1\|4845146_4845722_-	aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.8e-68	62.6
WP_095099608.1\|4845794_4847321_-	DUF853 family protein	A0A248XCZ8	Klebsiella_phage	3.5e-79	43.3
WP_095099610.1\|4847473_4848199_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_095099611.1\|4848198_4849884_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	7.5e-224	72.5
WP_061798930.1\|4850043_4850613_-	peptidylprolyl isomerase A	A0A1V0S9I2	Catovirus	7.8e-08	31.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage