CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906460	Staphylococcus simiae strain NCTC13838 chromosome 1	10 crisprs	cas3,DEDDh,DinG,csa3,WYL	7	2	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906460_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_1

369494-369592

Orphan

Consensus_repeat	Method
TTTTAACATTTTTCTATGACGGGTCCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_1

>merge|NZ_LT906460|1|369494-369592|CRISPRCasFinder
TTTTAACATTTTTCTATGACGGGTCCCTTGCCCAACTATGCCCGTCTTGCACATAAAAGAAAAAATTTTATTTTTAAAATTTTTCTATGACGGGTCCCT

>NZ_LT906460|1|1|369494-369592|CRISPRCasFinder
TTTTAACATTTTTCTATGACGGGTCCCT	TGCCCAACTATGCCCGTCTTGCACATAAAAGAAAAAATTTTAT
TTTTAAAATTTTTCTATGACGGGTCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002462889.1\|363616_364006_-\|DUF1398-family-protein	unknown	unknown	gnl\|CDD\|227849
NZ_LT906460.1\|WP_002464864.1\|372748_374077_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT906460.1\|WP_002462893.1\|365591_365795_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_LT906460.1\|WP_002464866.1\|375878_376625_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NZ_LT906460.1\|WP_002464865.1\|374624_375803_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_LT906460.1\|WP_002462900.1\|368134_369256_-\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|226742
NZ_LT906460.1\|WP_002464861.1\|369761_370307_-\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274100
NZ_LT906460.1\|WP_088177463.1\|362587_363334_-\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|223876
NZ_LT906460.1\|WP_002462886.1\|363290_363506_-\|twin-arginine-translocase-TatA/TatE-family-subunit	unknown	unknown	gnl\|CDD\|237837
NZ_LT906460.1\|WP_002464862.1\|370498_371422_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_LT906460.1\|WP_002462891.1\|364258_365455_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_LT906460.1\|WP_002462897.1\|367363_367990_+\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NZ_LT906460.1\|WP_002462896.1\|366524_367364_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_LT906460.1\|WP_002464869.1\|381860_382964_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181320
NZ_LT906460.1\|WP_095092558.1\|376647_378897_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_LT906460.1\|WP_002464863.1\|371581_372295_+\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224896
NZ_LT906460.1\|WP_002464868.1\|380688_381864_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NZ_LT906460.1\|WP_002464867.1\|378893_380735_-\|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|236321
NZ_LT906460.1\|WP_088177464.1\|360792_362481_+\|FTR1-family-protein	unknown	unknown	gnl\|CDD\|223744
NZ_LT906460.1\|WP_002462894.1\|365791_366508_+\|DUF3169-family-protein	unknown	unknown	gnl\|CDD\|371493

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002462889.1\|363616_364006_-\|DUF1398-family-protein	gnl\|CDD\|227849	COG5562, COG5562, Phage envelope protein [General function prediction only].	2.59957e-38
NZ_LT906460.1\|WP_002464864.1\|372748_374077_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.48032e-13
NZ_LT906460.1\|WP_002462893.1\|365591_365795_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	8.13041e-25
NZ_LT906460.1\|WP_002464866.1\|375878_376625_-\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	8.60453e-72
NZ_LT906460.1\|WP_002464865.1\|374624_375803_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_LT906460.1\|WP_002462900.1\|368134_369256_-\|low-temperature-requirement-protein-A	gnl\|CDD\|226742	COG4292, COG4292, Predicted membrane protein [Function unknown].	3.13547e-108
NZ_LT906460.1\|WP_002464861.1\|369761_370307_-\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	gnl\|CDD\|274100	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.	7.84004e-12
NZ_LT906460.1\|WP_088177463.1\|362587_363334_-\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|223876	COG0805, TatC, Sec-independent protein secretion pathway component TatC [Intracellular trafficking and secretion].	3.48163e-62
NZ_LT906460.1\|WP_002462886.1\|363290_363506_-\|twin-arginine-translocase-TatA/TatE-family-subunit	gnl\|CDD\|237837	PRK14861, tatA, twin arginine translocase protein A; Provisional.	1.31994e-17
NZ_LT906460.1\|WP_002464862.1\|370498_371422_+\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	3.51031e-24
NZ_LT906460.1\|WP_002462891.1\|364258_365455_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	1.52161e-158
NZ_LT906460.1\|WP_002462897.1\|367363_367990_+\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	7.29886e-10
NZ_LT906460.1\|WP_002462896.1\|366524_367364_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.60815e-64
NZ_LT906460.1\|WP_002464869.1\|381860_382964_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181320	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein.	6.37392e-169
NZ_LT906460.1\|WP_095092558.1\|376647_378897_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_LT906460.1\|WP_002464863.1\|371581_372295_+\|dihydrofolate-reductase-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	1.65589e-18
NZ_LT906460.1\|WP_002464868.1\|380688_381864_-\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	2.44417e-165
NZ_LT906460.1\|WP_002464867.1\|378893_380735_-\|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase	gnl\|CDD\|236321	PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed.	0
NZ_LT906460.1\|WP_088177464.1\|360792_362481_+\|FTR1-family-protein	gnl\|CDD\|223744	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism].	4.0882e-66
NZ_LT906460.1\|WP_002462894.1\|365791_366508_+\|DUF3169-family-protein	gnl\|CDD\|371493	pfam11368, DUF3169, Protein of unknown function (DUF3169). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	7.65467e-20

>NZ_LT906460.1|WP_002462900.1|368134_369256_-|low-temperature-requirement-protein-A
MEQSFTPRHLEEKRAAFHELFFDLIFVYAIQKIAHVILTTNNGTISAELFFKYVVMSLFLWLVWSHQTFFTNRFGQVTFKDVTFMMLNLFIMVFLSNSLYPSFEKTFFPFFLCVGLMYVSIGTQYLLHIRTGLNYADKRTCQSFALVAFVIAFLSFLSLVLPQSIHYIPGFLGVFVAATGLIPFRKYLKLSPVNMMHLVERFSLLTIIIFGEVLVGLASSSFSITHFSVTYIFQFIILVSLFGVYWIVSENYINDKLESIGFRLAYTHLIINIALGIINSAIIFSNNDKLHPLFELNMMYISILLFYIGLWLITPYFHDELMHIKYISYALAIVIISYLISLIFVGHDHIMIISVAIATFSIMLIYYKNQNRA
>NZ_LT906460.1|WP_002462897.1|367363_367990_+|ABC-2-transporter-permease
MKGMLLTSFYTTKNKTYIYLLIAILAAAFFSFINPLMSSTMAAIFLITPITDNIKQEKDSRWMYYVSTLPIKRSDYIKAYFVYYLILLIIGAIIGIISTSIVTQSIMMGLMSGLMGFGVLGLYAIVFPLTFKFGPENSNVIMILSSILIVISFLGFFFVYGMVGGSFDNGYDIGMNGILVTLIYSVSGIIIMILSYILSVKIFNQQDL
>NZ_LT906460.1|WP_002462896.1|366524_367364_+|ABC-transporter-ATP-binding-protein
MTKLLKIEHLTKRYSESSFKLENISLSIDSSETVGLIGKNGSGKSTLINILVGNRHKDSGNIEFFEQPLTKDMSYKEEIGVVFDDLRVPNKLTVTEVNKIFEHIYQSWDSNRYFDLIQHFDLPKDTKLSTFSRGMRMKIALSVAMSHHAKLLILDEATAGMDISGREEVLELLEMFVEQGGGILISSHISEDIEQLADKLVFMKDGKIILTERKDELLAKYGIVTTDSEEISIPEHTIIASRSYKGQRQILVNDTLQVFDAQPLTHIDDATKIMMRGDV
>NZ_LT906460.1|WP_002462894.1|365791_366508_+|DUF3169-family-protein
MKVVRYIVLLIIGGIVGGIFGLLISGEGIGFEKWQFATQNNVIIITIIATITIMLLEWIVLLFQRKALNYKTLVDNNEELDNVDEYELLANRYFFKANLLSNLQSSIPLIVLLIFTFGRGNFSSIVYFLIPFLLSSVLATQTMFFSRKFDPRMPKIGEKNSIEKRFAIMDEGERHITLLSLFKIFNVNVSLLFLAIVLIGFYSISTGVNQSFSLLIVIAIFVYSLFNYLFKIQQYYKN
>NZ_LT906460.1|WP_002462893.1|365591_365795_+|helix-turn-helix-transcriptional-regulator
MRNRLKELRAKNGLNQTQLAKLAQVSRQTISLIERNSFTPSVLTAIRIARIFNETVENVFILEEDET
>NZ_LT906460.1|WP_002462891.1|364258_365455_+|amidohydrolase
MTNLRETVFKKIEDKEQRIIELRRHLHSHPELSFEEENTSQFIKDFYKDKDVKMHTDLNGQHGLVVEINGGQSGNTIALRADFDALPIKEDTGLEFASQNEGVMHACGHDAHTAYLLGVAEALIEVKEDLPGTVKIIHQHAEEVPPGGAQDILASGVLDDVDEVYGIHFFPNIDVGTIFVHKGEAFAGRSNFDMHIQGKGGHAAMPQNTNDALVAGAYFVTEAQTVVSRRIDPLESAVVSISAFEAPGGYNVIQDNVTLRGTVRYMNEDLKETLYNEINNIARGLETTFNVKVNLDYKYDYPVLYNSDKQTDAIQHILEQAQGSYVTDVVDLGPITASEDFAYYLTDKPGAFIVVGAKPVDYGVYPPHHPKMVLNEDGFQVAAKALADIALNRLTAEI
>NZ_LT906460.1|WP_002462889.1|363616_364006_-|DUF1398-family-protein
MEFSLSAIEQAHQQYTGVDFPKLFTAFKDMGMTYNTVNIQKGIATYIHPMEEDIIAESVKANAKIADNADVKVVQDVLIRHQQGQTDFAIFCNEMAQAGIYKWLIDINQGTCTYLDLQDNAIVSEQIPQ
>NZ_LT906460.1|WP_002462886.1|363290_363506_-|twin-arginine-translocase-TatA/TatE-family-subunit
MLANTFVLGITGPTSLVVISIIALIIFGPKKLPQFGRAIGSTLKEFKSAADDLDKDSHDTPSKESKQQREH
>NZ_LT906460.1|WP_088177463.1|362587_363334_-|twin-arginine-translocase-subunit-TatC
MTHPVRNPNNSENTSDYHSLLEHFSELRQRIVTILVFFVISVVIVYISSFWWMTSFISYITRAHVVLHAFSFTEMIQIYVMVIFFIALCLVSPVIFYQLWSFVSPGLHRHERRFIYKYSIFSALLFIVGVVFAFYIGFPLIINFSLKLSATLHIDPVIGFKAYLVELIRWLLVFGVLFQLPILFMGLAKFGLIDAHALKHYRKYIYFACFVTASIIAPPDLTLNILLTLPLILLFEFSMLIVKITYRQ
>NZ_LT906460.1|WP_088177464.1|360792_362481_+|FTR1-family-protein
MTLMIILVSYSMIPTDGHVVKAQSISDVYSTITDAKSTISDDKASTADKEKAIKQVSTDINNLKVKDNKQGKAVKKDVKALEKAKSTSQQQDKLSDLTKSLIAYEEKLDSKDASSKIKELQQQVDAKDKAMKKAIKDKDKNELESLNTSLNQIWTSNETVIRNYDANQYGQIEVALMQLRVAVQKEPLDTNKVKNAWTTFKSSIDNVDKKQNSKNDSKYKVTQLNDELDKAIKAIDDNNLSQADTALSHFIQIWPYVEGKIQTKDGALYTKIEDKIPYYQSVLDNSNKDRIKGGLEEINSQIKDTVGHSYSFVDVMIIFLREGLEVLLIVMTLTTMTRNVKDTKGTASVISGALVGLILSIALAVVFVQTLGNSGILREGMEAGLGIVAVVLMFVVGIWMHNRSNAKRWNDMIKQMYQNAISNGNLILLATIGLISVLREGVEVIIFYMGMVGELATKDFVIGIALAIVILIIFALLFRFIIKLIPIFYIFRVLSILIFVMAFKMLGVSIQKLQLLGVMPRHGIEGLPTINWLGFYPSYETVLAQVIYVVCIACFVLLKRKK
>NZ_LT906460.1|WP_002464861.1|369761_370307_-|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein
MDLRIQKTQKAIRQHFLELFYNENFDKITIKDITERAEIGRKTFYLHYIDKYDLLDKIVDQKMSELHDICLAKKELGLREGTTIWFDYFNHHRQFFTTLFQTSIAQKYKRQLQQLIADELADKLDEQHYRLNNIEPQLFLKFASSGIIELIDLYLQNEENDKHDIEEQTYQLLKAFLNVPQ
>NZ_LT906460.1|WP_002464862.1|370498_371422_+|alpha/beta-hydrolase
MNEQVMKFKTRNIETTGILRVPDNEGNKTLPTIVVMHPISSVKEQTASIYAKRLTEEGFVTFAFDAGHQGELHQAPEYIENPYYRVEDASFAIDFLNTLDVVDNDRIGILGICGGGGYAVNASMTDKRIKAVGSVVGADFGTLTREGDLSPNAALDMLHSLAKQREAEAMGSQHELTQYIPDSQQQRQDAGIEDIDIEQAVDYYKTDRGQHENSINRYRLISNMQVAGFDAYHLVDKLLDQPLYIVAGDVPGAFGSYRFAYKLFDNALTKDKKLHIVKGASHYDLYDQPQPVNEALSGLIPFYKEKL
>NZ_LT906460.1|WP_002464863.1|371581_372295_+|dihydrofolate-reductase-family-protein
MTRPTIIVHMSMSINGNITGPYGSVVEGEALKQAYESKHEYFDSKAMILGRKTIEEAFTATEMPELPSHPQIYSREEDYIADSDYNHYMVSLDPSGKAAWTSNYTTFRERPEMHVVEVVSETVSDAYLEHLRNLGISYIFGGENHQLDLKLVLEKLYRYFNLETVVLAGGGSINWSFFEQGLVDEVSVVIVPAVDDHYGRPQLFNNSHEDSDIKPQGFKIKHLEQLDGDIIWIHYSK
>NZ_LT906460.1|WP_002464864.1|372748_374077_-|MFS-transporter
MKKILDRLGFDNKHNFIGFLTVITAGQLIYSSFEAFKGTFYNLLLEVLNVSNAELGTLFSLIGIAVFFYIPGGWINNRFSIKSILIFGLVVRFITMSVIIFFTPNFTVLKCIAIIWGLIDAVFWPAVLNGIIFFTHQHNRGIGFGLLESIRRTQEVLMNLLIVGVMAVISGLAVFKGGMLFYNLLIIPLIYLIIRYIPKNGIAANHKLKHRYEINRDLESEDIVRDNKSLEALKGLLHVLFTQPRIWLASIGGLAAYWSYIILIYTVPYLQSVYQLTPNQTAIFGIINTGAMGIVMGLSAGLISDYIFKSATRMMFTALTLCIISLSLVAFFKTGIILSIILLLAFSIATFLANSIILAPISEINLPEKYTGAAMSLGSFATYAPIFFVYQMNGTLLDKYHYNIELAYHLIFRIGIIVDMIGAIAILLLLFMNRHKPKNSQA
>NZ_LT906460.1|WP_002464865.1|374624_375803_+|acetyl-CoA-C-acetyltransferase
MTKVVLAAAYRTPIGVFGGAFKDVPAYDLGATLIKHIIKQTNINPQDVDEVIIGNVLQAGQGQNPARIAAMKGGLPESVPSFTINKVCGSGLKSIQLAYQSILAGDNEIVIAGGMENMSQAPMLVNQGRFGFKMGHQTMIDSMVYDGLTDVFNQYHMGITAENLVEQYDISREEQDQFAVESQRKAVAAQQAGAFDSEIVPVTIPQRKGDPIVVTQDEGIRADASLEKLSRLRPAFKKDGSVTAGNSSGINDGAAMMLVMTEEKAQELNIKPLAVIDGFSSHGVDPSIMGIAPVGAIEKVLQRNNKAVADIDVFELNEAFASQSIAVDRELQLPKEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDDVETGLTSLCIGGGQAVAAVVSKY
>NZ_LT906460.1|WP_002464866.1|375878_376625_-|cyclase-family-protein
MTQYPLWQQLQTLKQSTWVDLTHTFDPDIPRFSDFEKGEVSTLFTVKDHGFYVQRWNIVTQYGTHIDAPIHFVENKRYLEDLNLKELVLPLIVLDFSQQAAINNDFVVTRADLEAWEQQHGTIESDTFVALRTDWSKRWPDIAQFENKDAKGQQHAPGWGLDALKFLFEERHIQAIGHETFDTDASIDVVKNGDLVGERYVLGQDKYQVELLTNLDLLPTRGAIIYAISPKPKHAPGFPVRAFAIRPS
>NZ_LT906460.1|WP_095092558.1|376647_378897_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MTTITTSNLGFPRLGRKREWKKAIESYWAQTITKSELDQTLTDLHKENLLLQKNYNLDSIPVGDFSLYDHILDTSLLFNIIPERFQGRDNNDDLLFDIARGNKDHVASALIKWFNTNYHYIVPEWDNVEPKIVRNVLLERFKFAQSLNINAHPVIVGPITFVKLSKGGNQTFEEKVQTLLPLYKEVFQSLIDAGAEYIQVDEPILVNDDSESYENITKEAYDYFAEAGVGNKLVIQTYFERAHVKFLSSLPVGGLGLDFVHDNGYNLRQIEAGDFDRSKTLYAGIIDGRNVWASDIAAKKSLIETLLTYTDHLVIQPSSSLLHVPVSLDDETLDTNIAEGLSFATEKLDELDALRRLFNNQDSTKYDKLKSRFERFQNQSFKNLDYDFDSVRTSRQSAFAKRIEQQQQRLNLPDLPTTTIGSFPQSREVRKYRADWKNKRISDEAYETFLNNEIARWIKIQEDIGLDVLVHGEFERNDMVEFFGEKLQGFLVTKFGWVQSYGSRAVKPPIIYGDVKWTAPLTVKETVYAQSLTDKPVKGMLTGPVTILNWSFERVDIPRKVVQDQIALAINEEVLALEKAGIKVIQVDEPALREGLPLRSEYHEQYLKDAVLSFKLATSSVRDETQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHGDLIKDFEDINYDLGIGLGVYDIHSPRIPTKEEITTAIDRSLQQIDRSLFWVNPDCGLKTRQEDEVKAALTVLVEAVKAKRQDKDGQDIA
>NZ_LT906460.1|WP_002464867.1|378893_380735_-|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase
MSQFLTQLKDNILVADGAMGTILYSEGIDTCPEAYNLSHPDKIEHIHRSYIAAGADVIQTNTYGANFEKLKNFGLEHKVKEIHQAAVRIAKKAATDHTFILGTVGGFRGIKQDDLSLQTILYHSEIQIDTLVEEGVDALLFETYYDLEELTHVIKHTRQKYEIPIIAQLTASNTNYLVNGTDINSALKSIVDCGANIVGLNCHHGPHHMQESFTHIELPDQAFLSCYPNASLLDIENSEIKYSDNAQYFGTVAQQLVNEGVRLIGGCCGTTPEHIKFIKSSVANLKPINSKKVVPITTSIHFNQSSTHTKQNLTSKVRERPTVIVELDTPKHLDTTKFFDNIAKLDKANIDAVTLADNSLATVRVSNIAAASLIKQYYNIEPLVHITCRDRNLIGLQSHLLGLSLIGVNEILAITGDPSKVGHLPGATNVYDVNSKGLTELALRFNQGINTDGDALKKCTHFNIAGAFNPNVRKLDGAVKRLEKKVDSGMSYFITQPVYSKEKIIEIYHATKHLDTPFFIGIMPIASYKNALFLHNEVPGIKMSDDILAQFEAVKDDKAKTRQLSLTLSKALIDTVHQYFNGLYIITPFQNVEDSLELAAYSKSITTHKEAIL
>NZ_LT906460.1|WP_002464868.1|380688_381864_-|PLP-dependent-transferase
MTLSRETEVIFDWRRGIDYHSANPPLYDSSTFHQQQLGGQTHYDYARSGNPNRTLVEEKLARLEHGDYAFAFASGIAAVSAVLLTFKSGDHIILPDDVYGGTFRLTEQILNRFNIAFTTVDTTNLEAITQAIQPNTKLIYLETPSNPCFKITDIEAVSTIAKAHNLLVAVDNTFMTPLGQSPLALGADIVIHSATKFLSGHSDLIAGAVITNNKVISDALYLIQNGTGNALSAQDSWMLAKHLKTLPVRFSQSVANTRKIVDFLLKQDEIAEVYYPGHNVTHLKQANNGGAVIGLRLKDETKAQAFVDALTLPLVSVSLGGVETILSHPATMSHAALPEEVRQQRGITFGLFRLSVGLEDPDELIADIKYALKEAFNESISHTIERQHFSS
>NZ_LT906460.1|WP_002464869.1|381860_382964_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKDTELAQIALTHDHTGAIANPIYLSTAYQHPSLGQSTGYDYTRTKNPTRSAFEESFAKLERGIASFATSSGMAAIQLICNLFKPNDEILVSFDLYGGTFRLFDYYEQQYGIQFKYVDFLNYEEVTNQITANTKALFIEPISNPQMIAIDVEPYYQLAQKHQLLTIIDNTFLTPYLSTPLEEGADIVLHSATKYIGGHNDVLAGVVTVKDDKLAQQLFDFHNMIGATLSPLDSYLLQRGLKTLHLRIERSQSNAQQLAAKCQDLEAIDQVLYSGRTGMLSLRLNKNYNVAKFLESLDICIFAESLGGTETLITFPYTQTHVDMPDSEKDKRGIDEQLIRLSIGIEDYTDIERDIIQALKHAYVGGIL

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Crispr_ID: NZ_LT906460_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_2

372604-372687

Orphan

Consensus_repeat	Method
TTACACGAACTCAACGGAAGTGTTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_2

>merge|NZ_LT906460|2|372604-372687|CRISPRCasFinder
TTACACGAACTCAACGGAAGTGTTTTTATTTTATTCCCACTAATTGGGGTCAGCTCATTACACGAACGCAACGGAAGTGTTTTT

>NZ_LT906460|2|2|372604-372687|CRISPRCasFinder
TTACACGAACTCAACGGAAGTGTTTTT	ATTTTATTCCCACTAATTGGGGTCAGCTCA
TTACACGAACGCAACGGAAGTGTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002462889.1\|363616_364006_-\|DUF1398-family-protein	unknown	unknown	gnl\|CDD\|227849
NZ_LT906460.1\|WP_002464864.1\|372748_374077_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT906460.1\|WP_002462893.1\|365591_365795_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_LT906460.1\|WP_002464866.1\|375878_376625_-\|cyclase-family-protein	unknown	unknown	gnl\|CDD\|224790
NZ_LT906460.1\|WP_002464872.1\|385525_385729_+\|DUF951-domain-containing-protein	unknown	unknown	gnl\|CDD\|226886
NZ_LT906460.1\|WP_002462900.1\|368134_369256_-\|low-temperature-requirement-protein-A	unknown	unknown	gnl\|CDD\|226742
NZ_LT906460.1\|WP_002464861.1\|369761_370307_-\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|274100
NZ_LT906460.1\|WP_002464862.1\|370498_371422_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_LT906460.1\|WP_002462891.1\|364258_365455_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_LT906460.1\|WP_002462897.1\|367363_367990_+\|ABC-2-transporter-permease	unknown	unknown	gnl\|CDD\|379133
NZ_LT906460.1\|WP_002462896.1\|366524_367364_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_LT906460.1\|WP_002464869.1\|381860_382964_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181320
NZ_LT906460.1\|WP_095092558.1\|376647_378897_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367
NZ_LT906460.1\|WP_002464863.1\|371581_372295_+\|dihydrofolate-reductase-family-protein	unknown	unknown	gnl\|CDD\|224896
NZ_LT906460.1\|WP_002464868.1\|380688_381864_-\|PLP-dependent-transferase	unknown	unknown	gnl\|CDD\|223699
NZ_LT906460.1\|WP_002464867.1\|378893_380735_-\|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|236321
NZ_LT906460.1\|WP_088177512.1\|383629_384469_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_LT906460.1\|WP_002464871.1\|384614_385499_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_LT906460.1\|WP_002464865.1\|374624_375803_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|180261
NZ_LT906460.1\|WP_002462894.1\|365791_366508_+\|DUF3169-family-protein	unknown	unknown	gnl\|CDD\|371493

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002462889.1\|363616_364006_-\|DUF1398-family-protein	gnl\|CDD\|227849	COG5562, COG5562, Phage envelope protein [General function prediction only].	2.59957e-38
NZ_LT906460.1\|WP_002464864.1\|372748_374077_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.48032e-13
NZ_LT906460.1\|WP_002462893.1\|365591_365795_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	8.13041e-25
NZ_LT906460.1\|WP_002464866.1\|375878_376625_-\|cyclase-family-protein	gnl\|CDD\|224790	COG1878, COG1878, Kynurenine formamidase [Amino acid transport and metabolism].	8.60453e-72
NZ_LT906460.1\|WP_002464872.1\|385525_385729_+\|DUF951-domain-containing-protein	gnl\|CDD\|226886	COG4481, COG4481, Uncharacterized protein conserved in bacteria [Function unknown].	5.93175e-29
NZ_LT906460.1\|WP_002462900.1\|368134_369256_-\|low-temperature-requirement-protein-A	gnl\|CDD\|226742	COG4292, COG4292, Predicted membrane protein [Function unknown].	3.13547e-108
NZ_LT906460.1\|WP_002464861.1\|369761_370307_-\|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein	gnl\|CDD\|274100	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.	7.84004e-12
NZ_LT906460.1\|WP_002464862.1\|370498_371422_+\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	3.51031e-24
NZ_LT906460.1\|WP_002462891.1\|364258_365455_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	1.52161e-158
NZ_LT906460.1\|WP_002462897.1\|367363_367990_+\|ABC-2-transporter-permease	gnl\|CDD\|379133	pfam13346, ABC2_membrane_5, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	7.29886e-10
NZ_LT906460.1\|WP_002462896.1\|366524_367364_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	9.60815e-64
NZ_LT906460.1\|WP_002464869.1\|381860_382964_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181320	PRK08247, PRK08247, methionine biosynthesis PLP-dependent protein.	6.37392e-169
NZ_LT906460.1\|WP_095092558.1\|376647_378897_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0
NZ_LT906460.1\|WP_002464863.1\|371581_372295_+\|dihydrofolate-reductase-family-protein	gnl\|CDD\|224896	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism].	1.65589e-18
NZ_LT906460.1\|WP_002464868.1\|380688_381864_-\|PLP-dependent-transferase	gnl\|CDD\|223699	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism].	2.44417e-165
NZ_LT906460.1\|WP_002464867.1\|378893_380735_-\|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase	gnl\|CDD\|236321	PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed.	0
NZ_LT906460.1\|WP_088177512.1\|383629_384469_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	4.59163e-82
NZ_LT906460.1\|WP_002464871.1\|384614_385499_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	5.63142e-39
NZ_LT906460.1\|WP_002464865.1\|374624_375803_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|180261	PRK05790, PRK05790, putative acyltransferase; Provisional.	0
NZ_LT906460.1\|WP_002462894.1\|365791_366508_+\|DUF3169-family-protein	gnl\|CDD\|371493	pfam11368, DUF3169, Protein of unknown function (DUF3169). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	7.65467e-20

>NZ_LT906460.1|WP_002464863.1|371581_372295_+|dihydrofolate-reductase-family-protein
MTRPTIIVHMSMSINGNITGPYGSVVEGEALKQAYESKHEYFDSKAMILGRKTIEEAFTATEMPELPSHPQIYSREEDYIADSDYNHYMVSLDPSGKAAWTSNYTTFRERPEMHVVEVVSETVSDAYLEHLRNLGISYIFGGENHQLDLKLVLEKLYRYFNLETVVLAGGGSINWSFFEQGLVDEVSVVIVPAVDDHYGRPQLFNNSHEDSDIKPQGFKIKHLEQLDGDIIWIHYSK
>NZ_LT906460.1|WP_002464862.1|370498_371422_+|alpha/beta-hydrolase
MNEQVMKFKTRNIETTGILRVPDNEGNKTLPTIVVMHPISSVKEQTASIYAKRLTEEGFVTFAFDAGHQGELHQAPEYIENPYYRVEDASFAIDFLNTLDVVDNDRIGILGICGGGGYAVNASMTDKRIKAVGSVVGADFGTLTREGDLSPNAALDMLHSLAKQREAEAMGSQHELTQYIPDSQQQRQDAGIEDIDIEQAVDYYKTDRGQHENSINRYRLISNMQVAGFDAYHLVDKLLDQPLYIVAGDVPGAFGSYRFAYKLFDNALTKDKKLHIVKGASHYDLYDQPQPVNEALSGLIPFYKEKL
>NZ_LT906460.1|WP_002464861.1|369761_370307_-|TetR/AcrR-family-transcriptional-regulator-C-terminal-domain-containing-protein
MDLRIQKTQKAIRQHFLELFYNENFDKITIKDITERAEIGRKTFYLHYIDKYDLLDKIVDQKMSELHDICLAKKELGLREGTTIWFDYFNHHRQFFTTLFQTSIAQKYKRQLQQLIADELADKLDEQHYRLNNIEPQLFLKFASSGIIELIDLYLQNEENDKHDIEEQTYQLLKAFLNVPQ
>NZ_LT906460.1|WP_002462900.1|368134_369256_-|low-temperature-requirement-protein-A
MEQSFTPRHLEEKRAAFHELFFDLIFVYAIQKIAHVILTTNNGTISAELFFKYVVMSLFLWLVWSHQTFFTNRFGQVTFKDVTFMMLNLFIMVFLSNSLYPSFEKTFFPFFLCVGLMYVSIGTQYLLHIRTGLNYADKRTCQSFALVAFVIAFLSFLSLVLPQSIHYIPGFLGVFVAATGLIPFRKYLKLSPVNMMHLVERFSLLTIIIFGEVLVGLASSSFSITHFSVTYIFQFIILVSLFGVYWIVSENYINDKLESIGFRLAYTHLIINIALGIINSAIIFSNNDKLHPLFELNMMYISILLFYIGLWLITPYFHDELMHIKYISYALAIVIISYLISLIFVGHDHIMIISVAIATFSIMLIYYKNQNRA
>NZ_LT906460.1|WP_002462897.1|367363_367990_+|ABC-2-transporter-permease
MKGMLLTSFYTTKNKTYIYLLIAILAAAFFSFINPLMSSTMAAIFLITPITDNIKQEKDSRWMYYVSTLPIKRSDYIKAYFVYYLILLIIGAIIGIISTSIVTQSIMMGLMSGLMGFGVLGLYAIVFPLTFKFGPENSNVIMILSSILIVISFLGFFFVYGMVGGSFDNGYDIGMNGILVTLIYSVSGIIIMILSYILSVKIFNQQDL
>NZ_LT906460.1|WP_002462896.1|366524_367364_+|ABC-transporter-ATP-binding-protein
MTKLLKIEHLTKRYSESSFKLENISLSIDSSETVGLIGKNGSGKSTLINILVGNRHKDSGNIEFFEQPLTKDMSYKEEIGVVFDDLRVPNKLTVTEVNKIFEHIYQSWDSNRYFDLIQHFDLPKDTKLSTFSRGMRMKIALSVAMSHHAKLLILDEATAGMDISGREEVLELLEMFVEQGGGILISSHISEDIEQLADKLVFMKDGKIILTERKDELLAKYGIVTTDSEEISIPEHTIIASRSYKGQRQILVNDTLQVFDAQPLTHIDDATKIMMRGDV
>NZ_LT906460.1|WP_002462894.1|365791_366508_+|DUF3169-family-protein
MKVVRYIVLLIIGGIVGGIFGLLISGEGIGFEKWQFATQNNVIIITIIATITIMLLEWIVLLFQRKALNYKTLVDNNEELDNVDEYELLANRYFFKANLLSNLQSSIPLIVLLIFTFGRGNFSSIVYFLIPFLLSSVLATQTMFFSRKFDPRMPKIGEKNSIEKRFAIMDEGERHITLLSLFKIFNVNVSLLFLAIVLIGFYSISTGVNQSFSLLIVIAIFVYSLFNYLFKIQQYYKN
>NZ_LT906460.1|WP_002462893.1|365591_365795_+|helix-turn-helix-transcriptional-regulator
MRNRLKELRAKNGLNQTQLAKLAQVSRQTISLIERNSFTPSVLTAIRIARIFNETVENVFILEEDET
>NZ_LT906460.1|WP_002462891.1|364258_365455_+|amidohydrolase
MTNLRETVFKKIEDKEQRIIELRRHLHSHPELSFEEENTSQFIKDFYKDKDVKMHTDLNGQHGLVVEINGGQSGNTIALRADFDALPIKEDTGLEFASQNEGVMHACGHDAHTAYLLGVAEALIEVKEDLPGTVKIIHQHAEEVPPGGAQDILASGVLDDVDEVYGIHFFPNIDVGTIFVHKGEAFAGRSNFDMHIQGKGGHAAMPQNTNDALVAGAYFVTEAQTVVSRRIDPLESAVVSISAFEAPGGYNVIQDNVTLRGTVRYMNEDLKETLYNEINNIARGLETTFNVKVNLDYKYDYPVLYNSDKQTDAIQHILEQAQGSYVTDVVDLGPITASEDFAYYLTDKPGAFIVVGAKPVDYGVYPPHHPKMVLNEDGFQVAAKALADIALNRLTAEI
>NZ_LT906460.1|WP_002462889.1|363616_364006_-|DUF1398-family-protein
MEFSLSAIEQAHQQYTGVDFPKLFTAFKDMGMTYNTVNIQKGIATYIHPMEEDIIAESVKANAKIADNADVKVVQDVLIRHQQGQTDFAIFCNEMAQAGIYKWLIDINQGTCTYLDLQDNAIVSEQIPQ
>NZ_LT906460.1|WP_002464864.1|372748_374077_-|MFS-transporter
MKKILDRLGFDNKHNFIGFLTVITAGQLIYSSFEAFKGTFYNLLLEVLNVSNAELGTLFSLIGIAVFFYIPGGWINNRFSIKSILIFGLVVRFITMSVIIFFTPNFTVLKCIAIIWGLIDAVFWPAVLNGIIFFTHQHNRGIGFGLLESIRRTQEVLMNLLIVGVMAVISGLAVFKGGMLFYNLLIIPLIYLIIRYIPKNGIAANHKLKHRYEINRDLESEDIVRDNKSLEALKGLLHVLFTQPRIWLASIGGLAAYWSYIILIYTVPYLQSVYQLTPNQTAIFGIINTGAMGIVMGLSAGLISDYIFKSATRMMFTALTLCIISLSLVAFFKTGIILSIILLLAFSIATFLANSIILAPISEINLPEKYTGAAMSLGSFATYAPIFFVYQMNGTLLDKYHYNIELAYHLIFRIGIIVDMIGAIAILLLLFMNRHKPKNSQA
>NZ_LT906460.1|WP_002464865.1|374624_375803_+|acetyl-CoA-C-acetyltransferase
MTKVVLAAAYRTPIGVFGGAFKDVPAYDLGATLIKHIIKQTNINPQDVDEVIIGNVLQAGQGQNPARIAAMKGGLPESVPSFTINKVCGSGLKSIQLAYQSILAGDNEIVIAGGMENMSQAPMLVNQGRFGFKMGHQTMIDSMVYDGLTDVFNQYHMGITAENLVEQYDISREEQDQFAVESQRKAVAAQQAGAFDSEIVPVTIPQRKGDPIVVTQDEGIRADASLEKLSRLRPAFKKDGSVTAGNSSGINDGAAMMLVMTEEKAQELNIKPLAVIDGFSSHGVDPSIMGIAPVGAIEKVLQRNNKAVADIDVFELNEAFASQSIAVDRELQLPKEKVNVKGGAIALGHPIGASGARVLVTLLHQLNDDVETGLTSLCIGGGQAVAAVVSKY
>NZ_LT906460.1|WP_002464866.1|375878_376625_-|cyclase-family-protein
MTQYPLWQQLQTLKQSTWVDLTHTFDPDIPRFSDFEKGEVSTLFTVKDHGFYVQRWNIVTQYGTHIDAPIHFVENKRYLEDLNLKELVLPLIVLDFSQQAAINNDFVVTRADLEAWEQQHGTIESDTFVALRTDWSKRWPDIAQFENKDAKGQQHAPGWGLDALKFLFEERHIQAIGHETFDTDASIDVVKNGDLVGERYVLGQDKYQVELLTNLDLLPTRGAIIYAISPKPKHAPGFPVRAFAIRPS
>NZ_LT906460.1|WP_095092558.1|376647_378897_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MTTITTSNLGFPRLGRKREWKKAIESYWAQTITKSELDQTLTDLHKENLLLQKNYNLDSIPVGDFSLYDHILDTSLLFNIIPERFQGRDNNDDLLFDIARGNKDHVASALIKWFNTNYHYIVPEWDNVEPKIVRNVLLERFKFAQSLNINAHPVIVGPITFVKLSKGGNQTFEEKVQTLLPLYKEVFQSLIDAGAEYIQVDEPILVNDDSESYENITKEAYDYFAEAGVGNKLVIQTYFERAHVKFLSSLPVGGLGLDFVHDNGYNLRQIEAGDFDRSKTLYAGIIDGRNVWASDIAAKKSLIETLLTYTDHLVIQPSSSLLHVPVSLDDETLDTNIAEGLSFATEKLDELDALRRLFNNQDSTKYDKLKSRFERFQNQSFKNLDYDFDSVRTSRQSAFAKRIEQQQQRLNLPDLPTTTIGSFPQSREVRKYRADWKNKRISDEAYETFLNNEIARWIKIQEDIGLDVLVHGEFERNDMVEFFGEKLQGFLVTKFGWVQSYGSRAVKPPIIYGDVKWTAPLTVKETVYAQSLTDKPVKGMLTGPVTILNWSFERVDIPRKVVQDQIALAINEEVLALEKAGIKVIQVDEPALREGLPLRSEYHEQYLKDAVLSFKLATSSVRDETQIHTHMCYSQFGQIIHAIHDLDADVISIETSRSHGDLIKDFEDINYDLGIGLGVYDIHSPRIPTKEEITTAIDRSLQQIDRSLFWVNPDCGLKTRQEDEVKAALTVLVEAVKAKRQDKDGQDIA
>NZ_LT906460.1|WP_002464867.1|378893_380735_-|bifunctional-homocysteine-S-methyltransferase/methylenetetrahydrofolate-reductase
MSQFLTQLKDNILVADGAMGTILYSEGIDTCPEAYNLSHPDKIEHIHRSYIAAGADVIQTNTYGANFEKLKNFGLEHKVKEIHQAAVRIAKKAATDHTFILGTVGGFRGIKQDDLSLQTILYHSEIQIDTLVEEGVDALLFETYYDLEELTHVIKHTRQKYEIPIIAQLTASNTNYLVNGTDINSALKSIVDCGANIVGLNCHHGPHHMQESFTHIELPDQAFLSCYPNASLLDIENSEIKYSDNAQYFGTVAQQLVNEGVRLIGGCCGTTPEHIKFIKSSVANLKPINSKKVVPITTSIHFNQSSTHTKQNLTSKVRERPTVIVELDTPKHLDTTKFFDNIAKLDKANIDAVTLADNSLATVRVSNIAAASLIKQYYNIEPLVHITCRDRNLIGLQSHLLGLSLIGVNEILAITGDPSKVGHLPGATNVYDVNSKGLTELALRFNQGINTDGDALKKCTHFNIAGAFNPNVRKLDGAVKRLEKKVDSGMSYFITQPVYSKEKIIEIYHATKHLDTPFFIGIMPIASYKNALFLHNEVPGIKMSDDILAQFEAVKDDKAKTRQLSLTLSKALIDTVHQYFNGLYIITPFQNVEDSLELAAYSKSITTHKEAIL
>NZ_LT906460.1|WP_002464868.1|380688_381864_-|PLP-dependent-transferase
MTLSRETEVIFDWRRGIDYHSANPPLYDSSTFHQQQLGGQTHYDYARSGNPNRTLVEEKLARLEHGDYAFAFASGIAAVSAVLLTFKSGDHIILPDDVYGGTFRLTEQILNRFNIAFTTVDTTNLEAITQAIQPNTKLIYLETPSNPCFKITDIEAVSTIAKAHNLLVAVDNTFMTPLGQSPLALGADIVIHSATKFLSGHSDLIAGAVITNNKVISDALYLIQNGTGNALSAQDSWMLAKHLKTLPVRFSQSVANTRKIVDFLLKQDEIAEVYYPGHNVTHLKQANNGGAVIGLRLKDETKAQAFVDALTLPLVSVSLGGVETILSHPATMSHAALPEEVRQQRGITFGLFRLSVGLEDPDELIADIKYALKEAFNESISHTIERQHFSS
>NZ_LT906460.1|WP_002464869.1|381860_382964_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MKDTELAQIALTHDHTGAIANPIYLSTAYQHPSLGQSTGYDYTRTKNPTRSAFEESFAKLERGIASFATSSGMAAIQLICNLFKPNDEILVSFDLYGGTFRLFDYYEQQYGIQFKYVDFLNYEEVTNQITANTKALFIEPISNPQMIAIDVEPYYQLAQKHQLLTIIDNTFLTPYLSTPLEEGADIVLHSATKYIGGHNDVLAGVVTVKDDKLAQQLFDFHNMIGATLSPLDSYLLQRGLKTLHLRIERSQSNAQQLAAKCQDLEAIDQVLYSGRTGMLSLRLNKNYNVAKFLESLDICIFAESLGGTETLITFPYTQTHVDMPDSEKDKRGIDEQLIRLSIGIEDYTDIERDIIQALKHAYVGGIL
>NZ_LT906460.1|WP_088177512.1|383629_384469_+|ParB/RepB/Spo0J-family-partition-protein
MVTNDDQRLIVSEDEQVIQIKLEQIKANPYQPRKTFDDIHLNNLADSIKQYGILQPIVVRKTIQGYYIVVGERRFRASKLAGLTTIPAIIKDLSDEDMMELAVIENLQREDLNAIEEAESYQRLMRELNITQREVAKRLSKSRSYIANMLRLLHLPQSIMVMVKKGDLSGAHGRTLLAIKNQNDMVKIARRVAKEHWSVRQLEQYINEIKQNNNETKDESKAQYRKPKFIAQQERQLKEQYGTKVDISTTNKVGKITFEFKSQEEFEILIKQLNVNYGK
>NZ_LT906460.1|WP_002464871.1|384614_385499_+|mechanosensitive-ion-channel-family-protein
MNQVMNILSSLFEPLTKIETYENVATKITMILIYIIVAIIVIKILDKMIEQGFRIQNKSRKGNKKRSKTLIALVQNVVKYIVWFIVITTILSKFGISVEGVIASAGVVGLAVGFGAQTIVKDIITGFFIIFESQFDVGDYVKINNGGTTVAEGTVKSIGLRSTRINTISGELTILPNSSMGEITNFSITNGTSIVEIPVSVDENIDKVEKKLNKLFLSLRSKYYLFVSDPVVLGIDAFEDTRITLRVSAETIPGEGASGARIIRKEAQKMFIQEGIKTPQPLYAAYNNIENDNN
>NZ_LT906460.1|WP_002464872.1|385525_385729_+|DUF951-domain-containing-protein
MTSKYGINDIVEMKKQHACGTNRFKIIRMGADIRIKCENCQRSIMIPRQAFDKKLKKIVVSHNDTNR

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Crispr_ID: NZ_LT906460_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_3

406385-406465

Orphan

Consensus_repeat	Method
AGAGAAACTGTGAAACAGTTTCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_3

>merge|NZ_LT906460|3|406385-406465|CRISPRCasFinder
AGAGAAACTGTGAAACAGTTTCAACAAGCAATGCGAGTTGGGCAAGGGACCCAACATAGAGAAACTGTGAAACAGTTTCAA

>NZ_LT906460|3|3|406385-406465|CRISPRCasFinder
AGAGAAACTGTGAAACAGTTTCAA	CAAGCAATGCGAGTTGGGCAAGGGACCCAACAT
AGAGAAACTGTGAAACAGTTTCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002461999.1\|414736_414958_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379173
NZ_LT906460.1\|WP_002462015.1\|402925_404314_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_LT906460.1\|WP_002464884.1\|393650_394280_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
NZ_LT906460.1\|WP_002462003.1\|411120_412662_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_LT906460.1\|WP_002462008.1\|407744_408323_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_LT906460.1\|WP_157738317.1\|401420_402605_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_LT906460.1\|WP_002461998.1\|414935_415196_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002462005.1\|409628_411095_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_LT906460.1\|WP_002464886.1\|396044_397568_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
NZ_LT906460.1\|WP_095092560.1\|398597_399353_+\|oxygen-insensitive-NADPH-nitroreductase	unknown	unknown	gnl\|CDD\|380322
NZ_LT906460.1\|WP_002462002.1\|412755_413892_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_LT906460.1\|WP_002462001.1\|413976_414594_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_LT906460.1\|WP_002462006.1\|408322_409591_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_LT906460.1\|WP_095092564.1\|406833_407241_-\|general-stress-protein	unknown	unknown	gnl\|CDD\|378584
NZ_LT906460.1\|WP_002461996.1\|415328_415484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_095092562.1\|399643_401338_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|226192
NZ_LT906460.1\|WP_002464885.1\|394318_395935_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198027
NZ_LT906460.1\|WP_002462012.1\|405546_406215_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002462014.1\|404471_405428_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_LT906460.1\|WP_002464887.1\|397585_398155_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002461999.1\|414736_414958_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	3.80103e-05
NZ_LT906460.1\|WP_002462015.1\|402925_404314_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_LT906460.1\|WP_002464884.1\|393650_394280_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	4.70916e-75
NZ_LT906460.1\|WP_002462003.1\|411120_412662_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_LT906460.1\|WP_002462008.1\|407744_408323_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	7.39333e-115
NZ_LT906460.1\|WP_157738317.1\|401420_402605_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	1.61254e-22
NZ_LT906460.1\|WP_002462005.1\|409628_411095_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_LT906460.1\|WP_002464886.1\|396044_397568_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
NZ_LT906460.1\|WP_095092560.1\|398597_399353_+\|oxygen-insensitive-NADPH-nitroreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	2.05228e-88
NZ_LT906460.1\|WP_002462002.1\|412755_413892_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	7.49544e-47
NZ_LT906460.1\|WP_002462001.1\|413976_414594_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.38561e-15
NZ_LT906460.1\|WP_002462006.1\|408322_409591_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	5.91123e-170
NZ_LT906460.1\|WP_095092564.1\|406833_407241_-\|general-stress-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	7.06121e-14
NZ_LT906460.1\|WP_095092562.1\|399643_401338_+\|IS1182-family-transposase	gnl\|CDD\|226192	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	8.13515e-37
NZ_LT906460.1\|WP_002464885.1\|394318_395935_-\|hypothetical-protein	gnl\|CDD\|198027	smart00959, Rho_N, Rho termination factor, N-terminal domain. The Rho termination factor disengages newly transcribed RNA from its DNA template at certain, specific transcripts. It it thought that two copies of Rho bind to RNA and that Rho functions as a hexamer of protomers. This domain is found to the N-terminus of the RNA binding domain.	0.00106206
NZ_LT906460.1\|WP_002462014.1\|404471_405428_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0.00750383
NZ_LT906460.1\|WP_002464887.1\|397585_398155_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	7.07274e-128

>NZ_LT906460.1|WP_002462012.1|405546_406215_-|hypothetical-protein
MQFKTIHSVKDPHYNEALALYDSKLDISLTEDKSIFKRSLENNKTENDYVFVVGLEDNHVISLATAHYEATTNSAFLIYLIAKNLPHHDDLMTATLAQVENELNTLSNIVHSRNINFLMMEVPKEPFDLTEAQNQVIEDRRQFLYEHQFKRQNDIDYIHPNYTFDDQAKEVDLFIKTNIELTKDIYGASIKSNYILKYVFANGISRDIIYPILEAMDLRKPF
>NZ_LT906460.1|WP_002462014.1|404471_405428_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEDDIELFRDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKQLPTNQNIAQLVEDLRNEIQQMRDERQLLGQMMNQVHQQQQELKELQHQITTKLDSNTESLKAIQTSQHEIKEAQATHSEELAKTSHTLEEQSKTQDTHKINHVDTSNHNQYSKTDDQLTEQSQTAESQKVSKEEQLSSSDAIAEASVAQHSDEAMTAADASEHHVDHNAQQHAEQQLVEEHATTTESSTTNDDAVTKTPNNSNTHEVNEPQQQSQHQEKKGFFARLFNL
>NZ_LT906460.1|WP_002462015.1|402925_404314_-|L-cystine-transporter
MGTLYTVINVIVLLIFVIVLNVMARKHVSFPKRVFTALGVGILLGVVLHLIYGVNSNVIETTSDWYSIIGEGYVALLQMIVMPLIFVSIVAAFSKIQIGDKFAKIGSFIFMFLIGTVAIAAIVGILYALIFGLDASTIDLGSAEHSRGSEIAKEAKNLTASTLPQQILELLPKNPFLDFTGQRTTSTIAVVIFASFVGFAYVRVARKQPEHGALLKKGIDAVYSLIMAIVTFVLRLTPYGVLAIMANTLATSNFTAVWTLGKFLLASYAALITMYLIHLLILSILGINPIRYMKKTLEVLIFAFTSRSSAGSLPLNVQTQTKRLGVPEGIANFSATFGLSIGQNGCAGIYPAMLAIMVAPVANVDIDFQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPIIDMGRTALNVNDSMLAGTGTARLTKHWDKETFDSDDYGELSAN
>NZ_LT906460.1|WP_157738317.1|401420_402605_-|IS110-family-transposase
MSKRNSVVAHYKDEKFQKEFTIQNNKNGYNYLLKYLNDLDHPQTIFESTGIYSRAMVRFCRVNQINFIEMNPLEAKFRTSSLRSWKTDQADAHKLAHLASTLKQTDSLSNHNHDSIFFELRERVRFHLEIENEQNRLKNEIVELLHQTFPGLENLFSSRYSIIALNIAEIFTHPDMVADISMDMLITHIFSSTDKGLSMNKAEKYAHQLVNIASESYPNVDRHSFLVEKVRLLIQQLKQSIERLKQLDNAMIQLAQQLDCFENIHSIPGIGKLSAAMIIGEIGDITRFRSHKQLNAFVGIDIKRYQSGGTSSKDTINKRGNKKARRLLFWVIMNILKGQHHYDNHVVDYYYKLRKQPNEKSHKTAVIACINRLLKTIHYLVMNQKLYDYQMSPH
>NZ_LT906460.1|WP_095092562.1|399643_401338_+|IS1182-family-transposase
MYKDYNMTQLTLPMETSVKIPQNDISRYVNDIVESIPDREFDEFKHYRGATSYHPKMMLKIILYAYTQSVFSGRKIERLLNDSLRMMWLSQNQTPSYKTINRFRVNPKTDALIESLFIQFHSQCLKQNLIDDQSIFIDGTKIEADANRYTFVWKKSILNYESDINENSKIIYQELVKDKIIPEIIEDKDTDLSKEDIDLIGSHLNKEIEDLNQQIENEIQPELRKQTRKKRTEIKKVKKKFDDYSERKSKYEEQKAILQDRNSYSKTDHDATFMRMKEDHMKNGQLKPGYNLQIATNSQFVLSYDVYQNPTDTRTLIPFLTLIKETYGYLPEYIVADAGYGSEQNYMAIIDDFNRTPLITYGMFIKDKTKKFKSDIFNTQNWEYDEINDEFICPNQKRLGFKRYAYRNDKYGFKRDFKLYECDDCTDCPLKHQCMKSKSKTNKKIMKNYNWEYFKSQVNQKLSEPETKKIYSQRKVDAEPVFGFTKAILGFTRMSVRGIDKVKRELGFVLMAVNIRKLAAQRAVYFKINNEKDNFYQFSIEIVFFYLNLELNVPGSFLRLVKYL
>NZ_LT906460.1|WP_095092560.1|398597_399353_+|oxygen-insensitive-NADPH-nitroreductase
MSDYVYNLVKKHHSVRKFKDKVLSEDTVRKLVEAGQSASTSSFLQAYSIIGVDDVKIKENLKEVSGQPYVVENGYLFVFVIDYYRHRLIDDNAETNMETAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILNLPDYVFPLFGMAVGEPADDENGSAKPRLPFEHVFHHNQYNDDKEQQREQIKQYDQTISGYYDKRTNGQRQETWSQQIETFLGNKARLDMLDQLRKAGLIQR
>NZ_LT906460.1|WP_002464887.1|397585_398155_-|peroxiredoxin
MSLINKEILPFTAQAYDPKNDEFKEVSDADLKGSWSVVCFYPADFSFVCPTELEDLQNQYAQLQELGVNVFSVSTDTHFVHKAWHDHSDAISKIQYTMIGDPSQTITRNFDVLDEALGLAQRGTFIVDPDGVVQAAEINADGIGRDASTLVHKIKAAQYVRQHPGEVCPAKWEEGSETLQPGLDLVGKI
>NZ_LT906460.1|WP_002464886.1|396044_397568_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGDVEFVASLGSDDKSKELKELLEEITDMSPRLSLSEKSLKRTPSFQVNKPGEDTGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKGLEGPFHFETFISLTCQKCPDVVQALNLMSVINPNITHTMIDGAVFREESENIMAVPAVFLDGQEFGNGRMTIQDILSKLGSTADASEFANKDPYDVLIIGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDTMTGIRATNIEKTDKAILVTLENDAVLESKTVIISTGASWRKLNIPGEDKLMNKGVAFCPHCDGPLFENKDVAVVGGGNSGVEAAIDLAGIVKHVTLLEYSDELKADNVLQDRLRSLSNVDIITNARSKEVIGEDHVTALSYEDVKTGDTQVIELDGIFVQIGLVPNTAWLNDIVELSPRGEVIIDRDNATNVPGIFAAGDVTDQKNKQIIISMGAGANAGLNAFDYIIRN
>NZ_LT906460.1|WP_002464885.1|394318_395935_-|hypothetical-protein
MLDINLIPNYKINNIRKFLNLSSKAHEVQIIHESLKPENIKRLANKITNKELQLLEDIIAKGDPAVIIDKDLVTELKITDHLGFIYQLSDDEFGINYLFLYFLNSVLFDEHNYELRDLTTEERHYIFFNVDRVQQHQNLNDVSLHDALENKTVPELKDICRTYEIKGFSNKNKDSLIDLICKAFFEDSSILNQMFVGSSLAELVMLFNILDNDKNYFIDNSLRLTEEMNLLDIDDFLMDYFIYFYDYRFDALVLPQDTRQHVIDFIDKQGGPKEFLNQFNDKLTDDDMLKDLQHITEYIEDNFDGDLEALDEFDGEDYLFGQGDQARRQLINELIIEIESGLIDKEDILPLRIILGAVNLYGLVTKAHLLSLMRQFYDASFSEQDLQFNLDILDPIGLYVQIRQFVLHPLMYDLFDNDEEVEEIGGHYYIPQTVDELINYDRYHFYKADTAIKEFIFYLRSQLVTTDDIEKGNWVDQILMLIRTLPHPDLILEFMNEFVENGIMKPITNEKLFNKKAKQAWNHLRVWALQGHSKYQLK
>NZ_LT906460.1|WP_002464884.1|393650_394280_-|NDxxF-motif-lipoprotein
MKTRLLFSTFLASALILTGCANKDSNQDDKQHHTTASQVPKHVKKITESDIFTSNKKNADISEKEMKEALTKYLAVNNDILDNKYYMQHELDKQSDSQTKVTDKQADRLSELSNLTVKNDLHFKNFVADNHIPKSYDKNTQRIINYFKALNSAISNVDETIEKLSYQPQNSINIVDVPTNYAGDVNKSQQDKIKDFLKSKNIPTDAINK
>NZ_LT906460.1|WP_095092564.1|406833_407241_-|general-stress-protein
MAEVTVLNTIGELYNAINEKKAQGYSESEMSVITKNKLHLNDLHDSEISLIATSGSFSDRTSKLLTGEDGERAVLTRYNFNPDEIANYKQQILDKKILLVVNADITSHKEVEEHNAAYKEVDITHYSEQSKGPKS
>NZ_LT906460.1|WP_002462008.1|407744_408323_+|xanthine-phosphoribosyltransferase
MESLGLKVKEDGVVIDEKILKVDGFLNHQIDAKLMNDVGRTFYEQFKDAGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGFFETDIHSFTKNKTSTVIVSKEFLNENDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQSGRQRLEDAGLIVSSLCKVASLKGNKVTLVGEE
>NZ_LT906460.1|WP_002462006.1|408322_409591_+|purine-permease
MKNLILSIQHLLAMYAGAILVPIIVGTSLKFTPDQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGLDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKNYGDVKNIILGVTTLIIILILQRFTTGFLKSIAILLGLLIGTILASMLGMVDLKQVGSAHWIGFPLPFRFSGFGFDITSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGNINFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIVLNFFFNGIKYKQTEENVK
>NZ_LT906460.1|WP_002462005.1|409628_411095_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDVLPKDVDLSVELSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMSIEEQADEVQKVKRSENGVISNPFFLTPGESVYEAEALMGKYRISGVPIVDNEEDRTLVGIITNRDLRFIEDFSIKIDDVMTKDNLITAPMNTTLESAEKILQEHKIEKLPLTKDGRLEGLITIKDIEKVIEFPNAAKDAHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIEQVKHIKKTYPEITLVAGNVATAEATKALYEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKTPKKFVPEGIEGRTAYKGPLQDTIYQLMGGVRSGMGYTGSHNLLQLREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>NZ_LT906460.1|WP_002462003.1|411120_412662_+|glutamine-hydrolyzing-GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEMSIEEIKRMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKATINAKSDELFAGLPSEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCNCTGEWTMENFIDIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAQERFMNKLQGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRALGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLERDIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>NZ_LT906460.1|WP_002462002.1|412755_413892_-|site-specific-integrase
MIKKYKKKDGTHAFMFVAYLGTDPVTGKQKRTTRRGFKTEREAKIAEAKLQTEIQQNGFLNNEITTFKEVYTLWLEQYQNTVRESTYQRVLTLFDTAILEHFKDIPVKKITIPYCQKVINKWNKKYKDMKAIRIYASNVLEYAVNLKIIADNPFKHTKQPRKNEVTQDDTLIYYSSDELQTFLGFVEDKPMYHAIFRTLAFTGFRRGELMALTWQDIDFDKKTISINKTCARGKDYKLVIQAPKTKSSLRTISIDDKTLDVLKHWKTQQRIESLKFGHNTMDKKQNVFTDITTNKILYPEHVNKVLNDICNDNNFKRIKVHGFRHVHCSLLFEAGLTIQEVQDRLGHGDIKTTMDIYAHVTEKQRDKVADKFANYINF
>NZ_LT906460.1|WP_002462001.1|413976_414594_-|helix-turn-helix-transcriptional-regulator
MENRIAELRKEKGLTLKKLSEELNVRDNTLSQYETGKRSPQLGLLQEIANFFNVSIEYLTKYTDQRDYPLENDEDALFLIKKLFNEPDFHYTHLSINTSLNLCMWIINNENLINSKYPELKSTTQWFIKDIISENKILNHYSKNRQEINKTLDKIDSLLLDEDYFGATPREVLTFMEESQRIGHEKTKELLSHMKTLPDSVNEED
>NZ_LT906460.1|WP_002461999.1|414736_414958_+|helix-turn-helix-domain-containing-protein
MFEIDKFLAIKLREIRARKNITLQKASIEIGISSKTLSLLENDQLKRIKKTTYKKITDWIMREGVGNESITKQ
>NZ_LT906460.1|WP_002461998.1|414935_415196_+|hypothetical-protein
MNQLLSNEASQQLVNDIVNLAEKLAIEKARKSQKRWLRQNEVMKEYRCTHADITNWEIAGLRKRRQGKSWYYDRKDIDEVLETFKQ
>NZ_LT906460.1|WP_002461996.1|415328_415484_+|hypothetical-protein
MKLYILISTLATAIGTLYAINIDFIHGLAITLLIQVFSVPVIERYEYKGDE

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Crispr_ID: NZ_LT906460_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_4

449052-449160

Orphan

Consensus_repeat	Method
TTTCACAGTTTCTACAGAAATGCAAGTTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_4

>merge|NZ_LT906460|4|449052-449160|CRISPRCasFinder
TTTCACAGTTTCTACAGAAATGCAAGTTGGGGTAGGCTGAGACAGCACCCTAGGAAGGGACCCAACACAGAGAAACTATTTCACAGTTTCTACAGAAATGCAAGTTGGG

>NZ_LT906460|4|4|449052-449160|CRISPRCasFinder
TTTCACAGTTTCTACAGAAATGCAAGTTGGG	GTAGGCTGAGACAGCACCCTAGGAAGGGACCCAACACAGAGAAACTA
TTTCACAGTTTCTACAGAAATGCAAGTTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002461752.1\|440536_440899_-\|DUF4064-domain-containing-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002461754.1\|441132_442158_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_LT906460.1\|WP_002464897.1\|462230_463937_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235505
NZ_LT906460.1\|WP_095092570.1\|443985_445236_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|180536
NZ_LT906460.1\|WP_002464349.1\|445837_446221_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240046
NZ_LT906460.1\|WP_002464893.1\|457027_458455_+\|PTS-system-trehalose-specific-EIIBC-component	unknown	unknown	gnl\|CDD\|273916
NZ_LT906460.1\|WP_002464896.1\|461652_462174_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_LT906460.1\|WP_002464899.1\|464349_464946_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_LT906460.1\|WP_040802315.1\|460207_460936_+\|trehalose-operon-repressor	unknown	unknown	gnl\|CDD\|274116
NZ_LT906460.1\|WP_088177493.1\|447811_448930_-\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|227725
NZ_LT906460.1\|WP_002461751.1\|439072_440218_+\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	unknown	unknown	gnl\|CDD\|181076
NZ_LT906460.1\|WP_002461756.1\|442157_442817_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_LT906460.1\|WP_002464350.1\|447026_447815_-\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|227725
NZ_LT906460.1\|WP_002464348.1\|445411_445681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002464898.1\|464025_464343_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669
NZ_LT906460.1\|WP_002464891.1\|450354_454854_+\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_LT906460.1\|WP_002464890.1\|449292_450177_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LT906460.1\|WP_002464894.1\|458542_460192_+\|alpha,alpha-phosphotrehalase	unknown	unknown	gnl\|CDD\|274115
NZ_LT906460.1\|WP_002464892.1\|454872_456336_+\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
NZ_LT906460.1\|WP_002461757.1\|442848_443691_+\|dipeptide-ABC-transporter-glycylmethionine-binding-lipoprotein	unknown	unknown	gnl\|CDD\|224381

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002461754.1\|441132_442158_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	1.88201e-160
NZ_LT906460.1\|WP_002464897.1\|462230_463937_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235505	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_LT906460.1\|WP_095092570.1\|443985_445236_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|180536	PRK06347, PRK06347, 1,4-beta-N-acetylmuramoylhydrolase.	2.78538e-37
NZ_LT906460.1\|WP_002464349.1\|445837_446221_+\|NUDIX-domain-containing-protein	gnl\|CDD\|240046	cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	8.43101e-34
NZ_LT906460.1\|WP_002464893.1\|457027_458455_+\|PTS-system-trehalose-specific-EIIBC-component	gnl\|CDD\|273916	TIGR01992, phosphotransferase_system_trehalose_permease, PTS system, trehalose-specific IIBC component. This model represents the fused enzyme II B and C components of the trehalose-specific PTS sugar transporter system. Trehalose is converted to trehalose-6-phosphate in the process of translocation into the cell. These transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci and Streptococci which contain their own A domain as a C-terminal fusion. This family is closely related to the sucrose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively). In E. coli, B. subtilis and P. fluorescens the presence of this gene is associated with the presence of trehalase which degrades T6P to glucose and glucose-6-P. Trehalose may also be transported (in Salmonella) via the mannose PTS or galactose permease systems, or (in Sinorhizobium, Thermococcus and Sulfolobus, for instance) by ABC transporters.	0
NZ_LT906460.1\|WP_002464896.1\|461652_462174_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	2.26326e-40
NZ_LT906460.1\|WP_002464899.1\|464349_464946_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	4.94295e-127
NZ_LT906460.1\|WP_040802315.1\|460207_460936_+\|trehalose-operon-repressor	gnl\|CDD\|274116	TIGR02404, Trehalose_operon_transcriptional_repressor, trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli. [Regulatory functions, DNA interactions].	2.12067e-67
NZ_LT906460.1\|WP_088177493.1\|447811_448930_-\|YibE/F-family-protein	gnl\|CDD\|227725	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown].	1.23456e-96
NZ_LT906460.1\|WP_002461751.1\|439072_440218_+\|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase	gnl\|CDD\|181076	PRK07671, PRK07671, bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase.	0
NZ_LT906460.1\|WP_002461756.1\|442157_442817_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.26324e-94
NZ_LT906460.1\|WP_002464350.1\|447026_447815_-\|YibE/F-family-protein	gnl\|CDD\|227725	COG5438, COG5438, Predicted multitransmembrane protein [Function unknown].	3.3255e-78
NZ_LT906460.1\|WP_002464894.1\|458542_460192_+\|alpha,alpha-phosphotrehalase	gnl\|CDD\|274115	TIGR02403, Trehalose-6-phosphate_hydrolase, alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.	0
NZ_LT906460.1\|WP_002464898.1\|464025_464343_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	3.58684e-40
NZ_LT906460.1\|WP_002461757.1\|442848_443691_+\|dipeptide-ABC-transporter-glycylmethionine-binding-lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.82321e-100
NZ_LT906460.1\|WP_002464890.1\|449292_450177_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.59558e-33
NZ_LT906460.1\|WP_002464892.1\|454872_456336_+\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NZ_LT906460.1\|WP_002464891.1\|450354_454854_+\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0

>NZ_LT906460.1|WP_088177493.1|447811_448930_-|YibE/F-family-protein
MLLQQRHFFTKPFNIIIVIFCIIYVCSIIFTLFNTSLYHQPIGKVTQVEHLSTTSTTDDQHNHDTKYKTKLTLNVLNGHFKGQTTNIEHDYVKSQADSEAFNKGDKVLLHISDKLTDADIIEKKRDTLTVTITGLFLLTVLIVGRKVGLQSILSLMINTIAVLTAIYIHITFSNTNLFLLMTMAMVCSTVITLLLVTGWHARTVITIISTIAGTMLAIGLTELVIALTGGQGIKYETMNFLSLPPKDIFLASVLIGSLGAIMDVAITIASGMHEILQRTPNISKTRWALAGRHIGQDIMGTMTNILLFSYLSGSLPMFLIYLKNANTLTYTISMNWSLEIVRALTGGIGIVLTIPITIVLMELGETLRRARL
>NZ_LT906460.1|WP_002464350.1|447026_447815_-|YibE/F-family-protein
MNAVVILGALLLILMIIFGGKKGLVSYLTLFLNFAILVISIIFIIFGMPIYIVTFIFCIVIAACNLFVLNSYNIKTQAAFIATIITTALLITVIYLAVYFGHLQGFATEQQDETYIYSMNIGINMVQFMVFTIILAVIAAVIDLAITISSPIYELYQVNPKLSQYELFQSGMRVGREILATSANTIYLAFFGGQLTLFFWFFKLNYSFGHIINSKIFAQEFISILLGGIAVAMSIPITAWMTSLLIKKRQHTRLKNDTVHMK
>NZ_LT906460.1|WP_002464349.1|445837_446221_+|NUDIX-domain-containing-protein
MIKCVCLVAETKDQILLVQVRHGAKYYFPGGKIEAGEGLVEALIRELDEELNLTLRQEDLEFIGTVVGPAYPQPNTLTELNGFRALIDIDWDDIAINNEITDIKWIDKQNSELIAPAVQQWIAQGIN
>NZ_LT906460.1|WP_002464348.1|445411_445681_-|hypothetical-protein
MSKKSQPERLSRLFNLAGFIVDGYNGMKYDAKNKKLVYLSLGLGAIGTLLDFYISFKSPRKVKKFGAVISLLGNGARLFTSLRKVKNEY
>NZ_LT906460.1|WP_095092570.1|443985_445236_+|LysM-peptidoglycan-binding-domain-containing-protein
MKYYKKRIKILKSSKLSKRRIFQVQKKVIAAIIGTSAIGAIASTQAEAASTHTVKSGESVWSISNKYGISIAKLKSLNGLTSNLIFPNQVLKVSGSTGVSNTTTSSNGSNSSSVYTVQAGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKLKVSGVASNTTNTGNAASASGSVYTVQAGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKLKVSGVASNTTNTGNAASAGSSVYTVQAGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKLKVSGTASPSTANTGNNASNGGNYQSPSFNHQNLYTWGQCTYHVFNRRAQIGKGISTYWWNANNWDNAAAADGYTIDGRATVGSIAQTDAGYYGHVMFVERVNSDGSILVSEMNYSAAPGIVTYRTIPAYQVNNYKYIH
>NZ_LT906460.1|WP_002461757.1|442848_443691_+|dipeptide-ABC-transporter-glycylmethionine-binding-lipoprotein
MKKLLGIIILAVLVLAACGGNNDKKVTIGVASNDTKAWEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQHFAFLDQYKKAHKGTEISALSTTVLAPLGIYSDKIKNIKDVKDGASVVVPNDVSNQARALKLLESAGLIKLKKDFGLSGTTKDITSNPKHLKIKAVDAQQTARALSDVDIAVINNGVATKAGKDPKKDPIYLENANSDAVKPYINIVAVNSKNMDNKTYKKIVDLYHSKEAQEALKQDVKDGEKPVNLSAKEIKAIEKDLAK
>NZ_LT906460.1|WP_002461756.1|442157_442817_+|ABC-transporter-permease
MFGSSLDSSQLMQALYETLYMVPVALVIGALIGIPLGILLVVTRKNGVWENQVIHQLLNPIINILRSVPFIILLIAIVPFTKLLVGTSIGTTAAIVPLTVYVAPYIARLVENSLLEVDEGIIEAAKAMGASPFQIIRYFLLPEALGSLILALTTAIIGLIGSTAMAGAVGGGGIGDLALVYGYQRFDTIVIVITVVVLIIIVQLIQTLGNILARLVRRH
>NZ_LT906460.1|WP_002461754.1|441132_442158_+|methionine-ABC-transporter-ATP-binding-protein
MIQFQHVNKTYRKKSRTIQALNDVNFTVNHHDIFGVIGYSGAGKSTLVRLVNHLESVSTGQVMVDGHDINQYSDKALRQVKKDIGMIFQHFNLLHSATVFKNVAMPLILSKVNKLEITQKVMEILDFVGLTDKKDHYPDELSGGQKQRVAIARALVTNPKILLCDEATSALDPATTASILELLKKVNRKFGVTIMMITHEMSVIKQICNRVAVMEKGEVVEIGSVKDVFSHPTTVTAKNFVSTVIQTEPTPSLLEQWNTKQTESYSDFKLFIDSTQMELPIINDLIENYHVKVNIMFSSMSEIQGEIVCYMWLRLTHTQQFRKDDVITYFDNQHIQYEEVQ
>NZ_LT906460.1|WP_002461752.1|440536_440899_-|DUF4064-domain-containing-protein
MSEINQNNTYVKQTSRVAEMVLGIMGSIFGMLGGIFAMFFGSLASSLEAEGGNSVIGLGVAVIIVCVITLILSCIINKKRVLMGTLLIIGGVLNIVFISLFGVLSGLLIIVAGILALIRK
>NZ_LT906460.1|WP_002461751.1|439072_440218_+|bifunctional-cystathionine-gamma-lyase/homocysteine-desulfhydrase
MKKKTKMIHGGHTTDDFTGAVTTPIYQTSTYLQDDIGDLRQGYEYSRTANPTRSSVESVIAALENGKFGFAFSSGVAAISAVVMLLDKGDHVILNSDVYGGTYRALTKVFTRFGIEVEFVDTTNTDNIEQAIKENTKMLFIETPSNPLLRVTDIKKSAEIAKQHHLISVVDNTFMTPYYQNPLDLGIDIVLHSATKYLGGHSDLVAGLVATSDDDLAERLAFISNSTGGILGPQDSYFLIRGLKTLGLRMEQINRSVSDIIAMLQAHPAVQQVFHPSIESHLNHDVHVAQADGHTGVIAFEVKDTDSAKQVIRETEYYTLAESLGAVESLISVPALMTHASIPADIRAKEGITDGLVRISVGIEDTEDLVQDLKSALDTLK
>NZ_LT906460.1|WP_002464890.1|449292_450177_-|LysR-family-transcriptional-regulator
MEIKQLRYFVEVAKREHISETALELNIAQSAISRQITLLEQELNVPLFQKQGRNISLTSEGKLLFNEALTILDHLDTTIEQFQNHGLSKHKSIYIGYEESDVSMMLLPLIQSFHLQNDTHIIPNLMTQNTIIDQVLNGNIDIGFTELNYDIKKHKSIYVLPLFEEHFHLYAPSDDPITLSTQPPLIQFENSRMYTLYSIAPSVKKQLQSFTKTDIYTISNKQLAQYILKQKDGYIICPKQISLPNSQDWVDITLEHTELKRTICAITKEPYVKSDIGILLTLIKQLMTKTSTFY
>NZ_LT906460.1|WP_002464891.1|450354_454854_+|glutamate-synthase-large-subunit
MHNDKLIKGLYDYREEHDACGIGFYANMDNKRSHDIIDKSLEMLRRLDHRGGVGADGMTGDGAGIMTEIPFEFFEQHITEFKIPSEGNYAVGLFFAKERIKGSIHEAIFHQYFENEGLKILGFRDVPVNKAAIAEHVAQTMPVIQQVFIDISDVTDVTKKLFLARKHLEYYTTTNDLELYFTSLSHKTIVYKGWLRSDQIKKLYLDLSNELYQSKLGLVHSRFSTNTFPSWKRAHPNRLLMHNGEINTIKGNVNWMRARQHKLINTVFGKDQHKIFNIVDEDGSDSAIVDNALEFLSLSMEPEKAAMLLIPEPWLYNKSNDANVRAFYEFYSYLMEPWDGPTMISFCNGDKIGALTDRNGLRPGRYTITKDNFIVFSSEVGVVDVPESNVAFKGQLNPGKLLLVDFNEHKVIENNDLKTRIANELPYQTWIEKYKKQFDFEHIQYRASDWSDETLFKLQRQFAYTKEDINKYMQELVESKKDPIGAMGYDAPIAVLNDKPESLFNYFKQLFAQVTNPPIDAYREKIVTSELSYLGGEGNLINPDEHVLDRIQLKRPVLNEHHIESIDQQTFNTTYLSTLYDGSLEEALNQLGESAIQAVTKGAQILVLDDSGLVDEKAYAMPMLLAISHIHQLLIKENLRMDTSLVAKSGETREVHHVACLLGYGANAVVPYLAQRTIEHMTLTERLPGDVIANVKTYTDVLSEGVIKVMAKMGISTVQSYQGAQIFEAIGLSDDVINRYFTGTQSKLSGLSIEQIDTENKARQQSGKDFLESGSTFQWRQQGQHHAFNPQTIFLLQHACRDNDYAKFKDYSQAVNHSRKDHIRHLLEFKPCRPIDIDQVEPVSDIVKRFNTGAMSYGSISAEAHETLAQAMNKLGGKSNSGEGGEDPKRYDVQVDGSNKVSAIKQVASGRFGVTSDYLQHAKEIQIKVAQGAKPGEGGQLPGTKVYPWIAKTRGSTPGIGLISPPPHHDIYSIEDLAQLIHDLKNANKDADIAVKLVSKTGVGTIASGVAKAFADKIVISGYDGGTGASPKTSIQHAGVPWEIGLAETHQTLKLNDLRSRVKLETDGKLLTGKDVAYACALGAEEFGFATAPLVVLGCIMMRVCHKDTCPVGVATQNKDLRALFRGKAHHVVNFMHFIAQELREILASLGLRSVEELVGRTDLLQRSTTIDPHSKAASLRVERLIENFEGINTKVIKQDHHLDIGFDLTQLYETTKPYIAAGQRYTGTFTVNNEQRDVGVITGSEITKRYGEQGLPENTINIYTNGHAGQSLAAYAPKGLTVHHTGDANDYVGKGLSGGTVIVKAPFEERQNEIIAGNVSFYGASGGKAFINGKAGERFCIRNSGADVVVEGIGDHGLEYMTGGHVLILGDVGKNFGQGMSGGVAYIIPSDIKTFIKDNQLDTLLMTTIKYNEEKLLIKGMLEEHIAQTNSTKAIDIVKKFNHIERYVVKVIPKDYQLMMQKIALHKSLNSNEDEATLAAFYDDSKVINHTQRPAIVY
>NZ_LT906460.1|WP_002464892.1|454872_456336_+|glutamate-synthase-subunit-beta
MGEFKGFMKYNKQYLSELSLVDRLTHHQAYQQRFTKDDASIQGARCMDCGTPFCQTGQLFGRETIGCPIGNYIPEWNDLVYRQDFKQAYERLSETNNFPDFTGRVCPAPCENACVMKINRESVAIKGIERTIIDEAFLNNWVKPKNPKARRNEKVAIVGSGPAGLTAAEELNYLGYRVTVYERAREAGGLLMYGIPNMKLDKEVVRRRIRLMEEAGIIFETGVEIGVDIDKDQLEQQYDAIILCTGAQKGRDLPLEGRMGAGIHFAMDYLTEQTQLLNGEITDITITAKDKNVIIIGAGDTGADCVATALRENCKSIVQFNKYTKLPEAITFKENNSWPLAMPVFKMDYAHQEYQAKFGKEPRAYGVQTMRYDIDNTGHIRGLYTQILQQSDQGMVMAEGPEKFWPADLVLLSIGFEGTETMVPRAFNIKTQHNKIVANDTDYQTNNDKIFAAGDARRGQSLVVWAIKEGRGVAKAVNQYLSTKVLV
>NZ_LT906460.1|WP_002464893.1|457027_458455_+|PTS-system-trehalose-specific-EIIBC-component
MAVKRQDVKAIVDAIGGQENLETATHCVTRLRLVLKDDSKVDKEALSDNPLVKGQFKADHQYQIVIGPGTVDEVYKQFVEETGTSEASKDDAKAAAAQKGNPLQRLIKLLGDIFIPILPAIVTAGLLMGINNILTMKGLFGPKELIVMYPQIADISNIINVIASTAFIFLPALIGWSSMRVFGGSPILGLVLGLILMHPQLVSQYDIGKGHIPTWNLFGLEIKQLNYQGQVLPVLIAAYVLAQLEKALNKVVHDSIKMLVVGPVALLVTGFLSFIVIGPIALIIGTGITAGVTFVFQHAGWLGGALYGLLYAPLVITGLHHMFLAVDFQLMGSSLGGTYLWPIVAISNICQGSAAFGAWYVYKRRKMVKEEGLALTSGISGMLGVTEPAMFGVNLPLKYPFVAAISTSCVLGAIIGMNKVLGSVGVGGVPAFISIQKEYWLVYIVVTIIAMIVPCILTIILSNFSKQQAKEIVED
>NZ_LT906460.1|WP_002464894.1|458542_460192_+|alpha,alpha-phosphotrehalase
MLKNQDWRKSVVYQIYPKSFNDTTGSGIGDIKGIIEKLDYITFLGVDYIWLTPVYESPMNDNGYDISNYLNINEDFGTLEDFELLVTEAHKRDLKVMLDIVINHTSTEHHWFKEAKKAKDNPYRDFYFFRKSQDGPPTNWESKFGGNAWQYDPVTDEYYLHLFDVTQADLNWENKEVRQALYNIVNHWIDFGVDGFRFDVINLISKGEFKDSSKIGKEFYTDGPRVHEFLHELNRQTFGDTDMMTVGEMSATTIDNCIKYTNPERQELNSVFNFHHLKVDYVNGEKWSNAKLDFHKLKTILMDWQTGIYQGGGWNAIFWCNHDQPRVVSRFGNDTTEELRQQSAKMLAITLHMLQGTPYIYQGEEIGMTNPHFTSIDQYRDVESLNAYQNMKQQGYDEDDIMDILGQKSRDNSRTPMQWSKENNAGFTEGKPWIDVARNYLSINVEQAIEDKNSILYTYKKLIDLRHQHDIITYGNIIPRHMKHNDLFIYDRTFDNRCWTVIANFSAQNVIIPEDVDLNGNIIIQEGIIEGNSISGYGAIVIETISENK
>NZ_LT906460.1|WP_040802315.1|460207_460936_+|trehalose-operon-repressor
MMKQKKFIKIYETLKADIINGKYSYGSSIPSENDLLQTYESSRETVRKALDLLVLDGMIQKIHGKGSLVIYQGRTEFPFSELVSFKEMQTELSITYTTDIIVNEVIKAYEVPEVQRKLAISDNETLIHIIRTRKINDHVKIVDEDYFLQSIVKAIGNDVAEDSIYHYLEHDLHLAISYSNKSITFEPFLEQEYKLFGQIEPAYCATVRSIVYLEDTTQFQYNISKHIATDYKFNEFSRRRTK
>NZ_LT906460.1|WP_002464896.1|461652_462174_+|N-acetyltransferase
MQIYLSTLTELDYDNSLDNIEESFNETPETSWQARKKVKYLRKSPLYNFELEVIAKNDNNEVVGHVLLIEVEIVSEVQTYYALAVASLSVKPDLRGQGLGSSLMSAVEERAKSQEYSTIIVRDNLEYFSRLGYDNAQAYDIQSEDHDNILVKFLWDHLDNPPHGVIKIPQQLV
>NZ_LT906460.1|WP_002464897.1|462230_463937_+|DNA-polymerase-III-subunit-gamma/tau
MNYQALYRMYRPQSFDDVVGQEHVTKTLKNAISKNKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSTDGEPCNECAICTGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISISQIVERLQYVADAQHLDYEDHALEFIAKASEGGMRDALSIMDQAIAFGDGQLTLQDALNVTGSVHDEALNQLFEEIVKGDVQAAFQRYHHFIAEGKEVNRLINDMIYFVRDTIMNKTADKENDYDALMTLDLNMLYQMIDIINDTLVSIRFSVNQNVHFEVLLVKLAELIKKQVPVVGVESNDVTHIVQQPNSDVLLQRMEQLEQELKALKAQGTSATSINKTNKKPTRSLQKNKNAFSMQQIAKVLDRANKEDIKLLKNRWQDVVDHAKNNDKKSLVSLLQNSEPVAASEDHVLVKFEEEIHCEIVNKDDEKRSNIESVVCNIVNKNVKVVGVPSDQWLRVRSEYIQSRKQDHSDDNSNDSSEQQQDVAQKAKDLFGEETVNIIDEE
>NZ_LT906460.1|WP_002464898.1|464025_464343_+|YbaB/EbfC-family-nucleoid-associated-protein
MRGGGNMQQMMKQMQKMQKKMAQEQEKLKEERIVGTAGGGMVAVTVTGHKEVVDVEIKEEAVDPEDVEMLQDLVLAATNEAMNKADELTQERLGKHTQGLNIPGM
>NZ_LT906460.1|WP_002464899.1|464349_464946_+|recombination-protein-RecR
MQYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRSVICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVNELILAMNPNLEGESTAMYISRLVKPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

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Crispr_ID: NZ_LT906460_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_5

744971-745069

Orphan

Consensus_repeat	Method
TTAGATTTTTAATCTTTACTAGCTCTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_5

>merge|NZ_LT906460|5|744971-745069|CRISPRCasFinder
TTAGATTTTTAATCTTTACTAGCTCTTATGCAATTGTTGCGCTAGCAATCAATTGTAATCATTTAAAGCAACTTAGATTTTTAATCTTTACTAGCTCTT

>NZ_LT906460|5|5|744971-745069|CRISPRCasFinder
TTAGATTTTTAATCTTTACTAGCTCTT	ATGCAATTGTTGCGCTAGCAATCAATTGTAATCATTTAAAGCAAC
TTAGATTTTTAATCTTTACTAGCTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002463917.1\|748155_749013_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_LT906460.1\|WP_002463919.1\|745465_746971_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_LT906460.1\|WP_002462129.1\|738826_739801_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_LT906460.1\|WP_002462127.1\|741424_741730_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225612
NZ_LT906460.1\|WP_002463843.1\|754987_755944_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_LT906460.1\|WP_095092591.1\|743257_743797_+\|5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
NZ_LT906460.1\|WP_002463918.1\|747616_748117_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|237320
NZ_LT906460.1\|WP_002462125.1\|741897_742953_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_LT906460.1\|WP_002463915.1\|750183_752289_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
NZ_LT906460.1\|WP_002463914.1\|752391_753360_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NZ_LT906460.1\|WP_002462131.1\|734939_736820_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_LT906460.1\|WP_002462130.1\|736834_738613_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_LT906460.1\|WP_002463916.1\|749822_750221_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|179603
NZ_LT906460.1\|WP_002463842.1\|755943_756702_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_LT906460.1\|WP_002462133.1\|731202_732207_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NZ_LT906460.1\|WP_002462128.1\|739793_741311_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_LT906460.1\|WP_002463841.1\|756814_757843_+\|siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_LT906460.1\|WP_002463844.1\|754029_755001_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
NZ_LT906460.1\|WP_002461875.1\|743889_744804_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_LT906460.1\|WP_002462132.1\|732580_734521_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	unknown	unknown	gnl\|CDD\|224287

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002463917.1\|748155_749013_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	9.58169e-09
NZ_LT906460.1\|WP_002463919.1\|745465_746971_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	6.59299e-165
NZ_LT906460.1\|WP_002462129.1\|738826_739801_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	2.36211e-156
NZ_LT906460.1\|WP_002462127.1\|741424_741730_-\|hypothetical-protein	gnl\|CDD\|225612	COG3070, TfoX, Regulator of competence-specific genes [Transcription].	6.9795e-08
NZ_LT906460.1\|WP_002463843.1\|754987_755944_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.37709e-108
NZ_LT906460.1\|WP_095092591.1\|743257_743797_+\|5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.78861e-97
NZ_LT906460.1\|WP_002463918.1\|747616_748117_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|237320	PRK13258, PRK13258, 7-cyano-7-deazaguanine reductase; Provisional.	3.52078e-77
NZ_LT906460.1\|WP_002462125.1\|741897_742953_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_LT906460.1\|WP_002463915.1\|750183_752289_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NZ_LT906460.1\|WP_002463914.1\|752391_753360_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	9.11324e-167
NZ_LT906460.1\|WP_002462131.1\|734939_736820_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_LT906460.1\|WP_002462130.1\|736834_738613_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_LT906460.1\|WP_002463916.1\|749822_750221_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|179603	PRK03600, nrdI, class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI.	1.91255e-53
NZ_LT906460.1\|WP_002463842.1\|755943_756702_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	3.33908e-137
NZ_LT906460.1\|WP_002462133.1\|731202_732207_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	7.26259e-131
NZ_LT906460.1\|WP_002462128.1\|739793_741311_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.31686e-146
NZ_LT906460.1\|WP_002463841.1\|756814_757843_+\|siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	4.68198e-113
NZ_LT906460.1\|WP_002463844.1\|754029_755001_+\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	3.48447e-146
NZ_LT906460.1\|WP_002461875.1\|743889_744804_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	2.04587e-72
NZ_LT906460.1\|WP_002462132.1\|732580_734521_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0

>NZ_LT906460.1|WP_002461875.1|743889_744804_-|diacylglycerol-kinase-family-lipid-kinase
MENKYTHGVLFYHEHSGLKNINEGIGEVTKSLSSICKHLSIQLSENEGDIIKYCQKIKDKQYADDIDILFILGGDGTVNELVNGVMTHQLNLPIGILPGGTFNDFTKTLNLNPNHKQASEQLVSSQVGSYDVIKVNDQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYVGSTVKTLMNPSKFTYDLTIDGKNYTGETSMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNDQSFSILNDIFKKRDSMNWNEITQGINHIAGKEITLSTDPVMKIDVDGEICLNTPIKIEVLPKAIQLLTFVN
>NZ_LT906460.1|WP_095092591.1|743257_743797_+|5'(3')-deoxyribonucleotidase
MARESIAIDMDEVLADTLGEIVEAVNYRESLGIKMEDLNGQKLKHVIPEHDGLITDILREPGFFRNLKVMPHAQDVVEKLNKHYDVYIATAAMDVPTSFEDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFSGKPIMFTAVHNINDDRFTRVNGWQDVEHYFLNDTK
>NZ_LT906460.1|WP_002462125.1|741897_742953_+|histidinol-phosphate-transaminase
MKEQLNQLSAYEPGLSPRALKEKYGIEGELFKLASNENLYGPSPKVKEAIKDHLDELYYYPETGSPLLKQAISKHLNVAPSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVEAANVVQVPLKDGGFDLEGIINSIDNDTKLVWLCNPNNPTGTYFSHEDLEDFMARVPSHVPVIIDEAYFEFVTAEDFPDTLAIQQQYDNAFLLRTFSKAYGLAGLRVGYVVASEQAITKWNIIRPPFNVTRLSEYAAVAALEDQDYLHEVTQKNSEQRQRFYDIPQSKHFLPSQTNFIFVKTDRVNDLYEALLNVGCITRPFPTGVRITIGFEEQNDKMLDVLRHFNY
>NZ_LT906460.1|WP_002462127.1|741424_741730_-|hypothetical-protein
MPTTKQYHDDILASLDSHHLTTRKMMGEYLLYFDKVLIGGFYDNRILLKQTPQPMTLLQSVPLVEPYKNAKKMYHIDHTFSNEQILNIMKDIQQQLNKYPI
>NZ_LT906460.1|WP_002462128.1|739793_741311_+|ABC-transporter-permease/substrate-binding-protein
MNSFWQILSERQGQLLSTLLEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGISEVDSSLIEAAKGIGMKPLRRLTKVELPIAMPVIMAGIRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIVFDLILRFMAHLSYRKLLITLGTIVLIIILAIVIPLFANKGDKITLAGKLGSEPSVITNMYKILIENDTKDSVEIKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEDLKSKQEHQVYEQAKHSLERQYHMTMLKPMKYNNTYALAVKKDFADKHHIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAIKKAYNLDLSNVKTMEPKLRYQAVNKNDINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKEKFLKEHPEIIKPLNKLENKISDEDMQTMNYKVTVKNEDPYTVAKDYLTKKGIIKN
>NZ_LT906460.1|WP_002462129.1|738826_739801_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYNNNVAVDNISFDINEGEFFVLIGPSGCGKTTTLKMINRLIDLSEGYIYFNNKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKEIDQRVNELLDMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLLNLQQKIKKTIVFVTHDIQEAMKLGDKICLLNEGHIEQIDTPDGFKEHPQSDFVKQFMGSHLTNNNQTSIDKKYIRELNIYRPINEAQYQSDLPKVNDNQVVEELYQLLSQHDAAIVSNSSGHEYVITRQDIFEYLSQHKEVASHE
>NZ_LT906460.1|WP_002462130.1|736834_738613_+|DNA-helicase-RecQ
MQQTLSHYFGYDQFRPGQEEIITRVINHQNVLGVLPTGGGKSICYQVPGLMLGGTTIVISPLISLMKDQVDQLKAMGINAAYLNSSLTQKEQQRIENELQQGTIQFLYVAPERFENRFFVNLLSHINIHLIAFDEAHCISKWGHDFRPSYQNVITKVFTLPQDFTIVALTATATTEVQQDIRQKLNISLDNEIKTSTKRHNLIFKVNPTYQRQKFVLDYVQQHRDEAGIVYCSTRKQVEELQEALQNQNIKSSIYHAGLSNKEREQAQNDFVYDRVKVVIATNAFGMGIDKSNVRFVIHYNMPGDIESYYQEAGRAGRDGLKSECILLFSERDIQLHEYFITISQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLAECQQCSNCVQENKTYNMTQEAKMIISCIARMKQQENYSVIIQVLRGEITDYIKFSHYDQLTTHGLMKDYTTSELSHLIDELRFKGFLNEKDEILLCDTSIKQLLNNEVEIFTTPFKQKTTETVYINTVEGVDRALYSQLLEVRQSLSDKLAIAPVSIFSDSTLEQFAKRKPETKQEMITIEGVGSYKLKHYCPAFLETIQNYKAIV
>NZ_LT906460.1|WP_002462131.1|734939_736820_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MESYKIEQLNKSYADKIIFDNLNLSISENEKIGLVGINGTGKSTLLKVIGGIDDDFTANINHPNQYRIRYSSQKQDLDGEMTVFQAVLSSDTTTLRVIRNYEQAVNDYAKDQSEQHFQTMMHAQEDMDRYEAWDYNAEIKTILSKLGINDTSKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESINWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELDRGKLKTYPGNYEDYIAMRAENEIIEQKQNQKQRALYKQELAWMRAGAKARSTKQQARINRFNDIEQDVKNQHKEDKAELNLAHSRLGKQVFELEQVTKSINKKVLFSDINEIIQSGQRIGIVGPNGAGKTTLLNILNGDDLNFDGTLKVGQTVKIAYFKQTEETLDRDIRVIDYLREESEIAKEQDGTVVSITQLLERFLFPSSTHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIATFKGAVITVSHDRYFLNKVAQFYWFIHDGKMEKIIGSFEDYESYKKEQDKLLLQQKQHKPKVEQSNRKKSGLSYKEKIEYQALMERIEQTERRMEEIDNQMVEASADYSKIKELNIEKEQLESQYDCDITRWSELEEIKEQQ
>NZ_LT906460.1|WP_002462132.1|732580_734521_+|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS
MSSQKKKISLFAFFILTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLIALILSVFLFFKGKKAFWFMFVGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTIVYLFVLIFRSKWLDTKAFSKKFVPVVMATAVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIQNNQQKALASEDDLTKVLNYTKQKHTQPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGNQDFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAYSLKGDNTYESLPAILDQKQGYTSNVMHGDYKTFWNRDQIYKHFGIDKFYDATYYDMSDDNVVNLGLKDKVFFKDSANYQAKMKQPFYSHLITLTNHYPFTLDEKDASIEKPNTGDSTVDGYIQTAHYLDQALEEYVNDLKKKGLYKDSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFADLNRTGFWIKIPGKSGGINKEYAGQADVMPTILHLVGIDTKNYIMFGTDLFSKDHNQVIPFRNGDFITKDYKFVNGKIYSNKNNEQLTTKPKDFDKNKNQVEKDLEMSDNVLNGDLFRFYDNPDFKKVNPAKYKYETGPKGNQKK
>NZ_LT906460.1|WP_002462133.1|731202_732207_+|biotin-dependent-carboxyltransferase-family-protein
MSIIIENSGLFSSFQDFGRKGYEHDGVIACGALDTLAHEIANRLVANDKHEATLEMTNKMPTIRFTEPTLIALAGGHVKAYTENMTIQPYKLYLLDEGDVLRFKETSYTSRVYLAVGGGFKLSSWLGSYSTDFNVKIGGFFGRQLQNGDQIELKRDYTSRHHKLFKNLADTKKTDWGIDGYALSFNYMSDVFHVIKNKGTQDFKEDAVHRFTKYDYKVTSKANRMGMILEGEKIKAFYDDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQLGTIASYHLTKLAQKPQGARLKFQFIDIETAEKNLVKYSNWLNQLFHGIEYRMQIEMNK
>NZ_LT906460.1|WP_002463919.1|745465_746971_-|peptide-MFS-transporter
MTQHNSHGSEIQEIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLLFYMYYAIVDNGLGIDKTTAMSIMSVYGALIYMTSIPGGWIADRITGTRGATLIGAVFIIIGHICLSLPFALFGLFASMFFIIIGSGLMKPNISNIVGRLYPENDKRMDAGFVIFYMSVNMGALISPIVLQQFLDVKNFHGGFLIAAIGMALGLVWYILFNRKNLGNVGMKPTNPLSPAEKKKYGTTIGIITAIVVIVLAITIITNSFSFNLISNTVLVLGLALPVIYFTIMIKSKDVTDTERSRVKAFIPLFILGMLFWAIQEQGSNVLNVYGIEQSDMKLNLFGWKTNFGAAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTTLAGASYILIGIIGYASGSAHFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKSFNAQMMSIWYLTNASAQALNGTLVKLIKPLGQTNYFIFLGVVAIVVTLIVLCFTPKIVKAMKGVR
>NZ_LT906460.1|WP_002463918.1|747616_748117_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MTQGRQQDELQDITLLGNQNNQYHFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNIKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNTKYETMAEHRLMNHDLYPEKIDNR
>NZ_LT906460.1|WP_002463917.1|748155_749013_-|DMT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLYFIFKYKQPMFGKLSSQPLLITRSTLGLIGVLLNIFAIDHMVLSDADSLMKLNPFWTILLSLIFLHEKVRKYQITAMLIAIIGMLLIVKPEFSSSMIPSLIGLLSGIFAASAYTCVRALSSREGPYTIVFYFSLFSVVVLIPFTIFTYVPMSNLQLLYLLGAGLSAAVGQIGITLAYSFAAAKDISIFTYASIIFTALFGFILFGESPDLYATLGYVVIIGASYYMFEKARREAKS
>NZ_LT906460.1|WP_002463916.1|749822_750221_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MKVIYFSFTGNVRRFIKRAEITDALEITQSNCTEVINEPFIIVTGTIGFGEVPNPVQSFLEVNHQNLVGVAASGNRNWGQNFAKAGRTISEQYNVPLLMKFELHGTNNDVIEFKNKVGNLNENHGREKVQSY
>NZ_LT906460.1|WP_002463915.1|750183_752289_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMDEKKYNHIELNNEVTKRQENGFFSLDKDQEALSVYLEEIHDKTIFFDSEIERLHYLVDNDFYFNVFEIYSEEDLVEITDYAKSIPFTFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGDKEQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPVAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKQEYGVTLDDIDLDKYYDDMVQNPNVDKKKKDAREMLNLIAQTQLQSGYPYLMFKDNANKVHANSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESEKFRDSVHTGMDALTVVSDEANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNSIGYESEEAKDFANIFFMMMNYYSIERSMQIAKERGVKYKDFDKSDYANGKYFDFYTSQNFEPQYDKVRQLFAHMDIPTAEDWKKLQQDVQQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLISTIQTHVDQGISTILYVNSEISTRELARLYVYAHHKGLKSLYYTRNKLLSVEECTSCAI
>NZ_LT906460.1|WP_002463914.1|752391_753360_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSHAEQEAFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSAETNYLLDEWVLEEPHLKYKSDKIVSNYHKLWGKEASIYDQYMARVSSVFLETFLFYSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQSLRNELSESEKQKADQEMYKLLDDLYLNEVSYTGMLYDDIGLTEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTSTKNHDFFSVKGDGYVLALNVEALQDEDFNFED
>NZ_LT906460.1|WP_002463844.1|754029_755001_+|ABC-transporter-permease
MTYLLKGYVLFILIIFLTVSSLFIGVSELSFADIFHLSSKQFNILFASRIPRTVSILISGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILVKLIFAVICSVGGTFLFVKIIDFIKVKDIIFVPLLGIMIGGIVSSFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEVLYLSIPLLIVTYFFANHFTIVGMGKDFTKNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVVPNIISMYRGDHLKHALPHTMMLGAIFVLFADIIGRIIVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAHH
>NZ_LT906460.1|WP_002463843.1|754987_755944_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MHITNNKKLMILAIVTLIISLVYLLVGLDFEIFEYQFSSRLRKLILMILVGTAIAISVVIFQSITNNRLLTPSIIGLDAVYLFIKVLPIFILGTQSMWVTNVYLNFILTLVTMVLFALFLFQVVFKLGNFSVYFILLFGVLLGTFFRSITSFIQLIMDPESFLAVQSSMFANFNASNSKLVFFGAIILIIMLVITIISIPYLDVMLLGRDEAINLGLSYDRLTRLLLIMVSILVSVSTALVGPITFLGLLTVNLAHELMKTYEHKYILITTIFLSWISLFSAQWVVENLFEATTEMSLIIDLIGGSYFIYLLIKRRNA
>NZ_LT906460.1|WP_002463842.1|755943_756702_+|ATP-binding-cassette-domain-containing-protein
MIHVDNLSKNIQNNSILKDITLDIHKGCLTSMIGPNGAGKSTLLSAICRLIDIDHGEVEVDGQLMSDYKNNDLSKKISILKQSNHTEMNITVEQLVRFGRFPYSKGRLTKEDYEAVNQALDILQLHDIKERNIKTLSGGQRQRAYIAMTIAQDTEYILLDEPLNNLDMKHAVQIMQTLQMLAHNMDKAIVIVLHDINFASCYSDQIIALKDGQLVKSDVKDNVIKSDVLSDLYEMNIQIEEIKDQKICLYFK
>NZ_LT906460.1|WP_002463841.1|756814_757843_+|siderophore-ABC-transporter-substrate-binding-protein
MKKTVFYLLLTLVLVLAACGNNSEKEDSATDSKDSKDTVTIKNNYELSGEKKDGSDAKNVNETVKVPKNPKNAVVLDYGALDVMKEMGLADKVKALPKGEGGKSLPDFLSDFKEDKYTNTGNLKEVNFDKVAETKPEVIFISGRTANQKNMDEFKKAAPKAKIVYVGSDDKQLVKSMKSNTTNIGKIYDKEDKAKELNKKLDDKIDSMKDKTKKFDKSVMYLLVNEGELSTYGPKGRFGSLVFDTLGFKPVDKDVSDSTHGQNVSNEYINKENPDVILAMDRGQAIGGKSTAKKTLNNSVLKDVTAVKEDKVYNLDPKLWYFSSGSTTTTVKQIEELEKVVE

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Crispr_ID: NZ_LT906460_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_6

1154042-1154136

Unclear

Consensus_repeat	Method
AAGAGCTAGTAAAATTTAAAAATTTAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_6

>merge|NZ_LT906460|6|1154042-1154136|CRISPRCasFinder
AAGAGCTAGTAAAATTTAAAAATTTAACATAAAGGAATACAATTGATTGCTAGCGCAACAATTGCATAAGAGCTAGTAAAATTTAAAAATTTAAC

>NZ_LT906460|6|6|1154042-1154136|CRISPRCasFinder
AAGAGCTAGTAAAATTTAAAAATTTAAC	ATAAAGGAATACAATTGATTGCTAGCGCAACAATTGCAT
AAGAGCTAGTAAAATTTAAAAATTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002462177.1\|1150037_1150439_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|369157
NZ_LT906460.1\|WP_002462589.1\|1155433_1157842_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|224119
NZ_LT906460.1\|WP_002462178.1\|1150601_1152299_-\|fibronectin-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224212
NZ_LT906460.1\|WP_002464926.1\|1143681_1144782_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_LT906460.1\|WP_002464552.1\|1165924_1166800_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|224084
NZ_LT906460.1\|WP_002462174.1\|1148747_1149359_+\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_LT906460.1\|WP_002462181.1\|1153228_1153441_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|224672
NZ_LT906460.1\|WP_002462588.1\|1158084_1158288_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225196
NZ_LT906460.1\|WP_002462583.1\|1162322_1163066_+\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	unknown	unknown	gnl\|CDD\|223704
NZ_LT906460.1\|WP_002462587.1\|1158501_1158990_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|184757
NZ_LT906460.1\|WP_095092669.1\|1144774_1147948_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_LT906460.1\|WP_002462176.1\|1149388_1149592_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002462586.1\|1158982_1159915_+\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_LT906460.1\|WP_002462590.1\|1154234_1155434_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_LT906460.1\|WP_002462172.1\|1148055_1148748_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_LT906460.1\|WP_002462584.1\|1161221_1162316_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237717
NZ_LT906460.1\|WP_002462582.1\|1163062_1165087_+\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_LT906460.1\|WP_002462179.1\|1152605_1153229_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_LT906460.1\|WP_002464927.1\|1142405_1143680_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_LT906460.1\|WP_002462585.1\|1159911_1161219_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	unknown	unknown	gnl\|CDD\|237857

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002462177.1\|1150037_1150439_+\|VOC-family-protein	gnl\|CDD\|369157	pfam06983, 3-dmu-9_3-mt, 3-demethylubiquinone-9 3-methyltransferase. This family represents a conserved region approximately 100 residues long within a number of bacterial and archaeal 3-demethylubiquinone-9 3-methyltransferases (EC:2.1.1.64). Note that some family members contain more than one copy of this region, and that many members are hypothetical proteins.	6.11222e-54
NZ_LT906460.1\|WP_002462589.1\|1155433_1157842_+\|primosomal-protein-N'	gnl\|CDD\|224119	COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair].	0
NZ_LT906460.1\|WP_002462178.1\|1150601_1152299_-\|fibronectin-binding-domain-containing-protein	gnl\|CDD\|224212	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].	2.57426e-177
NZ_LT906460.1\|WP_002464926.1\|1143681_1144782_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_LT906460.1\|WP_002464552.1\|1165924_1166800_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|224084	COG1162, COG1162, Predicted GTPases [General function prediction only].	1.1608e-125
NZ_LT906460.1\|WP_002462181.1\|1153228_1153441_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|224672	COG1758, RpoZ, DNA-directed RNA polymerase, subunit K/omega [Transcription].	6.29071e-18
NZ_LT906460.1\|WP_002462588.1\|1158084_1158288_-\|TM2-domain-containing-protein	gnl\|CDD\|225196	COG2314, XynA, Predicted membrane protein [Function unknown].	2.10722e-11
NZ_LT906460.1\|WP_002462583.1\|1162322_1163066_+\|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase	gnl\|CDD\|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	2.00973e-85
NZ_LT906460.1\|WP_002462587.1\|1158501_1158990_+\|peptide-deformylase	gnl\|CDD\|184757	PRK14595, PRK14595, peptide deformylase; Provisional.	3.15035e-91
NZ_LT906460.1\|WP_095092669.1\|1144774_1147948_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_LT906460.1\|WP_002462174.1\|1148747_1149359_+\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	1.67726e-73
NZ_LT906460.1\|WP_002462586.1\|1158982_1159915_+\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	1.06998e-150
NZ_LT906460.1\|WP_002462590.1\|1154234_1155434_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_LT906460.1\|WP_002462172.1\|1148055_1148748_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	3.38714e-130
NZ_LT906460.1\|WP_002462584.1\|1161221_1162316_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237717	PRK14455, PRK14455, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_LT906460.1\|WP_002462582.1\|1163062_1165087_+\|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	5.23846e-113
NZ_LT906460.1\|WP_002462179.1\|1152605_1153229_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	3.20172e-114
NZ_LT906460.1\|WP_002464927.1\|1142405_1143680_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_LT906460.1\|WP_002462585.1\|1159911_1161219_+\|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB	gnl\|CDD\|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	0

>NZ_LT906460.1|WP_002462181.1|1153228_1153441_+|DNA-directed-RNA-polymerase-subunit-omega
MLNPPLNQLTEQIKSKYLIATTAAKRARELDEHPETALLTEYHSYKPVGKALEEIADGKIRPIISSDYYG
>NZ_LT906460.1|WP_002462179.1|1152605_1153229_+|guanylate-kinase
MENEKGLLIVLSGPSGVGKGTVRKSIFEDPTTSYKYSISMTTRQMRDGEVDGVDYFFKTKDEFEALIKDDQFIEYAEYVGNYYGTPVQYVKDTMAEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESNEKIQSRINEAKKEVEMMNLYDYVVVNDEVELAKNRVQCIVEAEHLKRERVEAKYRKMLLEAKK
>NZ_LT906460.1|WP_002462178.1|1150601_1152299_-|fibronectin-binding-domain-containing-protein
MAYDGLFTKKMVESLQFLISGRIHKINQPDNDTIIMVVRQNRQNHQLLLSIHPSFSRLQLTNKKYDNPFNPPMFARVFRKHLEGGIIEDIRQIGNDRRVEIDIKSKDEIGDTTYRTVILEIMGKHSNLILVDNNYKIIEGFKHLTPNTNLYRTVMPGFKYEAPPTQHKVNPYDVNGKEVLQYIDFNSGNIAKQLLNHFEGFSPLITNEIVSRRHFMTTETLPEAFDEVMAETTLDPIPVFHKNHDSGKEDFYFMKLNQFYDDMVIYDSLNDLLDRYFDARGERERVKQRANDLVKFVQQQLHKYQNKLSKLIDEYENAKNKDTEQLYGELITANIYRIKQGDKEVIATNYYTNEDITIPLNPTKSPAANAQYYYKQYNRMKTREHELTHQINLTRENIDYFSNIEQQLQHITVSEIDDIRDELAEQGFMKQRKNATKKKKEQIQLQEYISSDGDTILVGKNNKQNDYLTNKKAKKSYIWLHTKDIPGSHVVILNDDPSEETIKEAAMLAGYFSKAGNSGQIPVDYTLIKHVHKPSGAKPGFVTYDNQKTLYATPDYEHIQQMRVK
>NZ_LT906460.1|WP_002462177.1|1150037_1150439_+|VOC-family-protein
MEIPKITTFLMFNNQAEEAVKLYTSLFEDSEIITMAKYDDNGPGDPGTVQHSIFTLNGQVFMAIDANSGTELPMNPAISLFVTVKDTLEMERLFNGLKKEGAILMPKTEMPPYREFAWVQDKFGVSFQLALPE
>NZ_LT906460.1|WP_002462176.1|1149388_1149592_+|hypothetical-protein
MNEQQTKNLYAKIKHCNEFINHSNDSNHSKEQLQQSETEMNEVQFDKNNNEDLFKHVKNVLRDQGHI
>NZ_LT906460.1|WP_002462174.1|1148747_1149359_+|orotate-phosphoribosyltransferase
MAKAIAKALLDIEAVTLSPNDLYTWSSGIKSPIYCDNRVTLGYPLVRGAIRDGLIKLIEAQFPDAEIISGTATAGIPHAAFIAEELKLPMNYVRSSSKSHGKQNQIEGANSKGKKVVVVEDLISTGGSSITAVDALKEAGADVLGVIAIFTYGLKKADDTFKNADLPFYTLSNYNELIEVAEDEGKITKDDIKTLVEWRDNLA
>NZ_LT906460.1|WP_002462172.1|1148055_1148748_+|orotidine-5'-phosphate-decarboxylase
MKDLPIIALDFESKEKVNQFLDLFDEPLFVKIGMELFYQEGPDLIKSVKSRGHDVFLDLKLHDIPHTVGKAMEGLAKLNVDLVNVHAAGGTLMMMQALQGLRKYNKNTKIIAVTQLTSTTEDMLHNEQNIQTSIEDAVLNYASLAKQAGLDGVVCSPLESQLLTNHLGVDFMKVTPGIRPQGSAKDDQHRITTPEQARQLGSTHIVVGRPITQSDDPVKSYQIIKESWLS
>NZ_LT906460.1|WP_095092669.1|1144774_1147948_+|carbamoyl-phosphate-synthase-large-subunit
MPKRNDIHTILVIGSGPIIIGQAAEFDYAGTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPTLGGQTGLNMAIQLHESGVLQANHVQLLGTELTSIQQAEDRELFRTLMNDLNVPVPESDIVNTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELLEIVSNGLHYSPATQCLLEKSIAGFKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVSLKVIRALGIEGGCNVQLALDPHSFDYYIIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEMLNPITGTSYAAFEPTLDYVISKIPRFPFDKFEKGERELGTQMKATGEVMAIGRTYEESLLKAIRSLEYGVHHLGLLNGESFDIDYIKERICQQDDERLFFIGEAIRRGISLDEIHDMTQIDYFFLHKFQNIINIEHELKAHQGDLEYLKYAKDYGFSDKTIAHRFDMTEEDVYQLRMANDIKPVYKMVDTCAAEFESTTPYYYGTYESENESIVTDKEKILVLGSGPIRIGQGVEFDYATVHAVWAIQQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTAINLADKLAKHGVTVLGTSLENLNRAEDRKEFEELLRRINVPQPQGKTATSPQEALTNAKEIGYPVVVRPSYVLGGRAMEIVDNDEELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAICDGETVVIPGIMEHIERAGVHSGDSIAVYPPQTLSNEELNTLEDYTIKLAKGLDIIGLINIQFVIAHDGVYVLEVNPRSSRTVPFLSKITNIPMAQLAMKAIMGEKLTAMGYKEGVQPYADGVFVKAPVFSFNKLKNVDITLGPEMKSTGEVMGKDETLEKALYKGLTGSGVEIKDHGTVLITVSDKDKDDIVKIAHRLNEVGYKILATSGTAERIKKDHIPVEVVGKIGGDNDLLTRIQQGDVQIVINTMTKGKEVERDGFQIRRTTVENGIPCLTSLDTANALTTVIESMTFTMREM
>NZ_LT906460.1|WP_002464926.1|1143681_1144782_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MQQKRYLVLEDGSYYEGYRLGSDHLNIGEIVFNTAMTGYQETISDPSYTGQIITFTYPLIGNYGINRDDFESLVPTLNGIVVKEASTHPSNFRQQKTLHDVLVLHQIPGISGVDTRSITRKIRQHGVLKAGFTDDKANIDNLIEKLQNVDLRNNEVESVSTKTPYVSTGQNLNVVLVDFGKKQNIVRELNIRGCNVTVVPFNTTAEAILAMSPDGVMLSNGPGNPEVVECAIEMIKGILGKIPFFGICLGHQLFALSQGATSFKMKFGHRGANHPVKHLQSGKVDITSQNHGYAIDKASLENTDLEVTHIALNDGTVEGLRHKTLPAFSVQYHPEANPGPTDSNYLFDDFVTMMNNAKEKGSQTHA
>NZ_LT906460.1|WP_002464927.1|1142405_1143680_+|dihydroorotase
MKLIKNGRILQNGELVNADILIEGKVIKEIGNDINVTEDVDIIDAQGHFVSPGFVDVHVHLREPGGEHKETIESGTLAAARGGFTTVCPMPNTRPVPDSIEHFDSLQRIIDDSAHVRVLPYASITTRQAGKALVDFEALAKEGAFAFTDDGVGVQTASMMYEAMQQASKVNKAVVAHCEDNSLIYGGAMHEGQRSKELGIPGIPNICESVQIARDVLLAEAAHCHYHVCHVSTKESVRVIRDAKRAGIHVTAEVTPHHLLLTEDDVPGNDAIYKMNPPLRSHEDRQALLDGLLDGTIDCIATDHAPHAREEKAQPMEKAPFGIVGSETAFPLLYTHFVKNGEWTLQQLVDYLTVKPSDTFNLDFGRLESGRLADITIIDLDNEQEIKGEDFLSKADNTPFIGYKVYGNPILTMVEGEIKYEGAK
>NZ_LT906460.1|WP_002462590.1|1154234_1155434_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MKKILLAVTGGIAAYKAIDLTSKLTQTGYEVRVMLTENAQQFVTPLAFQAISRNVVYTNTFLEENPHEIQHVALGDWADAIIIAPATANTIAKLSVGIADDMVTSTLLATETPTFVAPAMNVHMYNNKRTQHNMKILKDDGYHFIEPGSGYLACGYVAKGRMEEPLAIVSIIDDYFKAQQRISTSSFNGKNVLVTAGPTVEVIDPVRFVSNRSSGKMGFAIAQALMNRGANVTLVTGPTQLEDIPGAKMIHVQSAQEMFEAVKDRFEHQDMVVKAAAVSDYTPSEVLEHKLKKQDGDLSVTFKRTVDILKYLGEHKTSQFLVGFAAETKDVDAYAEQKLQKKNADVIISNNVGDQTIGFNSDDNELTMHFKDGQHIYIKKGRKSDLATRILDELETRWQ
>NZ_LT906460.1|WP_002462589.1|1155433_1157842_+|primosomal-protein-N'
MIAKVIVDIPSKSVDFKFDYIIPEHLESVVQKGIRVIVPFGPRTIQGYVMDIVNDLPEDIEQEKLKAIKEVQDIKPELTPELIELSEWMSSTHVIKRISMLEVMLPSAIKAKYHKAFKLIEGVDIPNHLAQRFDRHGYYNYKDAQKNNDITELIDLLQHDLVMEETILSQNIKKKVKKAARIIDSFNPDDVLAQLEKHIKQYDLYAYLTEERHKIVFLTDLDDMGFSKSSLDALVKKGYVEKYDAIVERNPFAERIFEQESKRQLTADQQRAYNAIKEKIVAHEQRTFLLHGVTGSGKTEVYLQTIEDVLNQDKQAMMLVPEIALTPQMVLRFKRRFGDDVAVLHSGLSNGERYDEWQKIRDGRARVSVGARSSVFAPFKNLGLIIIDEEHESTYKQEDYPRYHAREIAQWRSEYHHCPVILGSATPCLESYARAEKGVYQLLTLPNRVNNQALPKIDIVDMREELSEGNRSMFSIELRQAIQLRLDKNEQIVLFLNRRGYASFMLCRDCGYVPQCPNCDISLTYHKTTDLLKCHYCGYQETPPNSCPNCESEHIRQVGTGTQKVEELLQQEFEQARIIRMDVDTTSRKGAHEKLLSDFEQGKGDILLGTQMIAKGLDFPNITLVGVLNADTMLNLPDFRASERTYQLLTQVAGRAGRHDKEGQVIIQTYNPDHYAILDVQKNDYLTFYHKEMQYRKLGKYPPYYFLINFTISHQNMKKVMEASQHVHQILVQHLTDRALVLGPSPAALARINNEYRFQILVKYKSEPGLLQAIQFLDDYYHDKYIKDKLSLKIDIDPQLMM
>NZ_LT906460.1|WP_002462588.1|1158084_1158288_-|TM2-domain-containing-protein
MEVNKIIYILLAIFLGSFGVHKFYAGKNMQGILHLLFFWTGIPHILAIISAVLTLFRPSDENGNIMM
>NZ_LT906460.1|WP_002462587.1|1158501_1158990_+|peptide-deformylase
MAIKKLVPSTHPLLTTQAQKVTQFDNTLQQLLQDIEDTMYAHEAAGLCAPQIGQPLQVAMIDMEDEGLLQLINPTLISQSEETETDLEGSITIPDTYGRVTRSKLIVLESYDVNGNKVELTAHDDVARMILHTIDQLNGIPFIERAEHILTDKELEAYFNND
>NZ_LT906460.1|WP_002462586.1|1158982_1159915_+|methionyl-tRNA-formyltransferase
MTNIIFMGTPDFSTTILKMLVAEYNVIAVVTQPDRPVGRKKVLTAPPVKEVALEYDIPVYQPEKLAGSEELNQIIQLKADLIVTAAFGQLLPESLLQSPKLGAINVHASLLPKYRGGAPIHQAIIDGQQQTGVTIMYMVKKLDAGNIISQQAIDIEDQDNVGTMHEKLSFLGADLLKDTLPSIINGTNDSIPQDNDLATFASNISREDERINWDQKGRTIFNHIRGLSPWPVAYTTMDDTNLKIYQAHLVNGKQGEPGTIIATTKKAIIVATADDNAIAITDMQLAGKKRMLVANYLSGVQESLVGKKLI
>NZ_LT906460.1|WP_002462585.1|1159911_1161219_+|16S-rRNA-(cytosine(967)-C(5))-methyltransferase-RsmB
MTETVRSLAFDTIQDIMNDGAYSNIRINEVLSTNDLNAMDKGLFTEIVYGTVKRKYTLDYFLKPFVQTKIKAWVRQLLWMSIYQYVYLDKVPDHAIINEAVEIAKERGGYHNGNVVNGILRTMMRSDLPHFEEIADPKKRMAIEYSMPKWIIDHWVTHYGIEETKAILQSFMEQNDTTVRANITRASIDDIISKLQDEGYEVEQDQDLPYCLHILGQPIINSRSFKDGFVSIQDKSSMFVGHIIGLERHDHILDACSAPGGKACHIAELLMPEGHVDATDIHEHKIDLINYNIKKLRLNNIKAFQHDATKPYQQTYDKVLVDAPCSGLGVLRHKPEIKYTQSKEQIASLVDLQLEILENVKNNVKIGGTLIYSTCTIEQLENDNVIYTFLKNNKNFEFEPFQHPVTGEMVKTMQIMPQDFNSDGFFITKITRKEQ
>NZ_LT906460.1|WP_002462584.1|1161221_1162316_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MITTEKKKKNKFLPDFDKQSIYSLRFDEMQQWLVEHGQQKFRAKQIFEWLYQKRVNSIDDMTNISKDLRQLLQDNFTVTTLTTVVKQESRDGTIKFLFELQDGYTIETVLMRHDYGNSVCVTTQVGCRIGCTFCASTLGGLKRNLEAGEIVSQVLTVQKALDETNERVSQIVIMGIGEPFENYDEMMDFLKIVNDDNSLNIGARHITVSTSGIIPRIYDFADEDIQINFAVSLHAAKDDVRSRLMPINRAYNVEKLIEAIKYYQEKTNRRVTFEYGLFGGVNDQLEHARELAHLIKDLNCHVNLIPVNHVPERNYVKTPKDDIFKFEKELKRLGVNATIRREQGSDIDAACGQLRAKERQVETR
>NZ_LT906460.1|WP_002462583.1|1162322_1163066_+|Stp1/IreP-family-PP2C-type-Ser/Thr-phosphatase
MLEAQFFTDTGQHREKNEDAGGIFYNQTQQQLLVLCDGMGGHKAGEVASSFVTTELQQRFENENLIEQHQAENWLRQQIKDINFQLFHYAQENPEYHGMGTTCVCALVFDKSVVVANVGDSRAYVINGRQIDQITSDHSFVNHLVLTGQISKEEAFTHPQRNIITKVMGTDKRVSPDLFIKRLNFYDYLLLCSDGLTDYVKDHDIQRQLKKEQTLEEHGNHLMQLAMDHHSKDNVTFIVAAIEGDKV
>NZ_LT906460.1|WP_002462582.1|1163062_1165087_+|Stk1-family-PASTA-domain-containing-Ser/Thr-kinase
MIGKIINERYKIIDKLGGGGMSTVYLAEDTVLEMKVAIKAISIPPSEKEATLKRFEREVHNSSQLSHENIVSMIDVAEEDDCYFLVMEYIEGPTLSEYIHNHGPLSIDTAINFTNQILNGIKEAHDMRIVHRDIKPQNILIDKHKTLKIFDFGIAKALSETSFTQTNHVLGTVQYFSPEQAKGESTDEGTDIYSIGIVLYEMLTGEPPFNGETAVSIAIKHIQESVPNITTEIRHDVPQALSNVVLRATEKDKTNRYKTIQEMKDDLSSVLHENRAQEEVYELDKMKTKAVSYSKEDIANHLNNNPKATKQTMQVPIVEGPAHHQQFQHSEEALYTGPKKKKSKKKIILYSLIFVLLVVALISFVGMAMFGNKYEETPNVLGKTVKEAETIFNQHKLKLGKISRSYSDKYAENEIIKTNPNEGERIERGDSVDVVISKGPERVTMPNVIGLSKDEAIDKLKEVGLNNITVEQMYSHNVPEGKIADQSVAAESKVKKNGSEIKIYESLGPKQVYVDDYEGKSFSKAKKALENKGFKVVSKEVYDDDVDKGDVISQSPKAKSVDEGSTISFEVSKGKDKDASSKSDSDNDSDSDKVKSTSVSVDVPFSGKKNKPQTVKVYVRDKDNNGTSPKGEFTITSDQKIDIPLKIEKGKTAGYTVRVDGRIVADKDVSYDDA
>NZ_LT906460.1|WP_002464552.1|1165924_1166800_+|ribosome-small-subunit-dependent-GTPase-A
MKTGRIVKLISGVYQVDVESIRFNTKPRGLFRKNKFSPIVGDIVDFDVQNVNEGYIHHVHPRNNELKRPPVSNIDTLVVVMSAVEPNFSTQLLDRFLVIAHSYDLTARILVTKKDLASSKQVEEINQLLDIYNKIGYQTEFVGDGDDRKTLVDHWPPGLIVLSGQSGVGKSTLLNQYMPELKLETNDISKSLNRGKHTTRHVELFERHNGFIADTPGFSALDFDHIDKDDVKHYFLDLNYYGEQCKFRNCNHIKEPHCNVKKALEDGDIAQFRYEHYLQLFNEISNRKVRY

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Crispr_ID: NZ_LT906460_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_7

1689659-1689754

Orphan

Consensus_repeat	Method
GCAAGTTGGGCAAGGGACCCGTCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_7

>merge|NZ_LT906460|7|1689659-1689754|CRISPRCasFinder
GCAAGTTGGGCAAGGGACCCGTCATAGAAAAATTTTAAAAATAAAATTTTTTCTTTTATGTGCAAGACGGGCATAGTTGGGCAAGGGACCCGTCAT

>NZ_LT906460|7|7|1689659-1689754|CRISPRCasFinder
GCAAGTTGGGCAAGGGACCCGTCAT	AGAAAAATTTTAAAAATAAAATTTTTTCTTTTATGTGCAAGACGGG
CATAGTTGGGCAAGGGACCCGTCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002464920.1\|1682911_1683538_-\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_LT906460.1\|WP_002465058.1\|1678178_1679099_-\|primosomal-protein-DnaI	unknown	unknown	gnl\|CDD\|236353
NZ_LT906460.1\|WP_002462397.1\|1700895_1701753_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_LT906460.1\|WP_002462390.1\|1692458_1693727_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_LT906460.1\|WP_002462393.1\|1697026_1698784_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NZ_LT906460.1\|WP_002465060.1\|1673647_1675147_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223903
NZ_LT906460.1\|WP_095092752.1\|1680493_1680964_-\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|224246
NZ_LT906460.1\|WP_002462392.1\|1695238_1696600_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_LT906460.1\|WP_002462389.1\|1691521_1692226_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT906460.1\|WP_002462388.1\|1689857_1691525_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
NZ_LT906460.1\|WP_002465057.1\|1679098_1680493_-\|DnaD-domain-protein	unknown	unknown	gnl\|CDD\|226138
NZ_LT906460.1\|WP_002464921.1\|1681434_1682460_-\|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236079
NZ_LT906460.1\|WP_002465059.1\|1675756_1677697_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234752
NZ_LT906460.1\|WP_002462391.1\|1693768_1694890_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|184468
NZ_LT906460.1\|WP_095092754.1\|1683553_1684426_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|223344
NZ_LT906460.1\|WP_002462398.1\|1701883_1703113_-\|NAD-dependent-malic-enzyme-4	unknown	unknown	gnl\|CDD\|235976
NZ_LT906460.1\|WP_002462396.1\|1699951_1700896_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_LT906460.1\|WP_002464964.1\|1684441_1687075_-\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_LT906460.1\|WP_002464965.1\|1687267_1688761_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002462395.1\|1698805_1699774_-\|6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002464920.1\|1682911_1683538_-\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	2.08318e-91
NZ_LT906460.1\|WP_002465058.1\|1678178_1679099_-\|primosomal-protein-DnaI	gnl\|CDD\|236353	PRK08939, PRK08939, primosomal protein DnaI; Reviewed.	2.94738e-174
NZ_LT906460.1\|WP_002462397.1\|1700895_1701753_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_LT906460.1\|WP_002462390.1\|1692458_1693727_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_LT906460.1\|WP_002462393.1\|1697026_1698784_-\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NZ_LT906460.1\|WP_002465060.1\|1673647_1675147_-\|amino-acid-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	0
NZ_LT906460.1\|WP_095092752.1\|1680493_1680964_-\|transcriptional-repressor-NrdR	gnl\|CDD\|224246	COG1327, COG1327, Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription].	6.1545e-78
NZ_LT906460.1\|WP_002462392.1\|1695238_1696600_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_LT906460.1\|WP_002462389.1\|1691521_1692226_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.67317e-96
NZ_LT906460.1\|WP_002465057.1\|1679098_1680493_-\|DnaD-domain-protein	gnl\|CDD\|226138	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair].	5.30313e-115
NZ_LT906460.1\|WP_002464921.1\|1681434_1682460_-\|glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236079	PRK07729, PRK07729, glyceraldehyde-3-phosphate dehydrogenase; Validated.	0
NZ_LT906460.1\|WP_002465059.1\|1675756_1677697_-\|threonine--tRNA-ligase	gnl\|CDD\|234752	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_LT906460.1\|WP_002462391.1\|1693768_1694890_-\|citrate-synthase	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
NZ_LT906460.1\|WP_095092754.1\|1683553_1684426_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	1.68156e-104
NZ_LT906460.1\|WP_002462398.1\|1701883_1703113_-\|NAD-dependent-malic-enzyme-4	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_LT906460.1\|WP_002462396.1\|1699951_1700896_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_LT906460.1\|WP_002464964.1\|1684441_1687075_-\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_LT906460.1\|WP_002462388.1\|1689857_1691525_-\|sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	4.11762e-87
NZ_LT906460.1\|WP_002462395.1\|1698805_1699774_-\|6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0

>NZ_LT906460.1|WP_002464965.1|1687267_1688761_-|hypothetical-protein
MNIKQLEKTTITLIAILIFYILLGFFLPLMHDDLLWYSDYGNSMLNSETATLNGRYLGNFFEMIAVKISWIRWLTYGLTSVGLIWLIIKTIDAQKNIIFYFITFIMMLIMPSQIFSQTFGWFAGFYNYVPPILSTLFIIHTILNIIVYNKKMSVHNLVIFYIVCLIGQLFIENITVFNCMFLFLSLIYYFVSYRMINTKLLFGFLMSTIGTMLMFSNPNYHKIFFEGATDYQQVSNDKGFFTKIFETTTSVLPNWIYYNEIVIVIITTLILLFLLIKSKRFSQLDTLKRKSLIVGLLLLPTYYFIIYNQFELAHETHVSLFNIASTLICIIYIVAMILTMSIVLIDRKELIVTYIIMVSMHLISITLIIVSPIGPRNFLIVYVMHLIIVLMLLKRVCDYITFNLKWTISVATVLALVYLSTFSFINHQNELRVQNLKQQIKAYPKKKVYTLPLLPFEHYMQKVTPNEEKYQKFFNEYHGIPDDIKVKYIPFGTNKND
>NZ_LT906460.1|WP_002464964.1|1684441_1687075_-|DNA-polymerase-I
MNKLVLIDGNSLSFRAFYALPLLSNKAGIHTNAVYGFAMLLEKILKEEQPNHFLVAFDAGKTTFRHEKYSEYKGGRQSTPPELSEQFPYIRQLLDAYHIKRYELDNYEADDIIGTLSREADQAGFQTIIITGDRDLTQLATENVTIYYTKKGVTDVDHYTPEFIAEKYNGLKPKQIIDMKGLMGDSSDNIPGVAGVGEKTAIKLLNQFQNVEGVYEHIDDVSGKKLKEKLENSKEDAFMSKDLATINVESPIGVTLADTKMIDQENNNDKIELFKKLEFKQLLSDLDSDQADENTVVEKTFDIIDNFNDINFETISEASIHFELEGSNYLKDRILKFAVYIGDQHIVIDAQNIKDYPQLVAWLENQSTTKIVYDAKKTYVAAHRLNIDIQHIDFDVMLASYIIDPSRTIDDVQSVVSLYGQNYVKDNVAIYGKGKKFQVPEDDVLNPQVAAISEAINEAKPVMEEQLKEYNQLSLLADLELPLARILSQMEETGIYTDVNDLKEMEQEIQQKLDVLINNIHEAAGEQFNINSPKQLGVVLFETLKLPVIKKTKTGYSTAVDVLEQLQGEHPIIDYILEYRQLSKLQSTYVEGLQKVISDDQRIHTRFNQTLAQTGRLSSIDPNLQNIPVRLEEGRKIRKAFKPTSKDSVILSADYSQIELRVLAHITQDESMKEAFINGDDIHTATAMKVFGVEADEVDSLMRRQAKAVNFGIVYGISDYGLSQSLGITRKKAKAFIDDYLDSFPGVKQYMSDIVKDAKAVGYVETLLHRRRYIPDITSRNFNLRSFAERTAMNTPIQGSAADIIKLAMVQFADKVEDTNYHATLLLQVHDELIFEVPKSEVEDFSKFVEEIMENAIQLDVPLKVDSSYGPTWYDAK
>NZ_LT906460.1|WP_095092754.1|1683553_1684426_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEHVKRGIEPYIIGETIDKVLFSPKVIEGKDSGRATIIKGIELDTFKQLSEGYSIKKVTRRSKYIVFNIENDHDQRVLISHLGMAGGFFIVDQLHDILIPNYRKHWHVIFELSNGKKLVFSDIRRFGEIRNVATIESYPPFLDIAPEPFSDDALTYYLKRINQKTNINKPIKQVILDHKVIAGCGNIYACEALFRAGIRPDKKVSDLTHQQQEMVFYYVREVLEKGIKYGGTSFSDYRHADGKTGAMQLHLNVYKQNICKVCGDHIATQVIATRNSHYCPTCQK
>NZ_LT906460.1|WP_002464920.1|1682911_1683538_-|dephospho-CoA-kinase
MPKVIGLTGGIASGKSTVSDILTVYGFKVVDADKASRQAVEKGSKGLKQIIETFGEEALDDNGEMDRAYMGELVFNYPEKRLELNAIVHPIVREIMERDKEQLLKEGHNVIMDIPLLFENDLQHTVDEVWVVYTSESIQIERLMQRNDLSIEDARARVYSQIAIDKKSRMADHVIDNLGDKLELKQNVERLLEEEGYIEKPYYSDTNN
>NZ_LT906460.1|WP_002464921.1|1681434_1682460_-|glyceraldehyde-3-phosphate-dehydrogenase
MSTNIAINGMGRIGRMVLRIALQQEDLNIVAINASYPPETIAHLINYDTTHGKYDEKVEPIENGLKVGDHEIKLVADRNPENLPWKELDIDIVIDATGKFNHGDKAIAHINAGAKKVLLTGPSKGGDVQMIVKGVNDNHLDIDHFDIFSNASCTTNCIGPVAKVLNDNFGIINGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEQQVTAEAVNKAFENAGLEGIVEVEYEPLVSVDFNTNPHSAIIDAQSTMVMGDNKVKVIAWYDNEWGYSNRVVDVAKQLGKLMTSEKMVNAS
>NZ_LT906460.1|WP_095092752.1|1680493_1680964_-|transcriptional-repressor-NrdR
MKCPKCNSTHSKVVDSRHAEEINAIRRRRECENCGIRFTTFEHIEVSQLIVVKKDGTREQFLRDKILNGLVRSCEKRPVRFQQLEDITNKVEWQLRDEGHTEVSSRDIGEHVMNLLMNVDQVSYVRFASVYKEFKDVDQLLASMQGILSDNKRSDN
>NZ_LT906460.1|WP_002465057.1|1679098_1680493_-|DnaD-domain-protein
MGMQAYEFGLRPQDQFEVIQYFDLNHSHLDVLNRLFTPLIGSKAIGLYHFMTQFVERRRTSSHYLSHYVFMNELKLNLLEFRQQMDLLEAIGLVKTFVKHNKEESQFVYELIQPPTAHLFFNDPMLSIFLYSEVDHKRFQELKHYFEYQQKDLSTFKQTTRTFTEVFKVPTTKVDIDTSDIPINQSYQGMDLSDETFDFDMLIQMLGKHFISKEIITKEAKQLIIQLATLYGLTPDGMKRVILKSITSGQQLSFENMRKEARSYYLIQHDNRMPKLQVNTTNEAKTQPQNEDFNPQDNLEDWFELLEQTSPIDMLASWSESEPTLSQKAMIEELIDREKMSFGVINVLLQFVMLKEDMKLPKAYIFEIASNWKKKGIKTAKEAYNYAKKVNQPKQDNGNYQGGKNSTYHRQRKLISKEKTPKWLAEREVVKATNNDNEQNDQKLEQDRQEFLARLSKKWEEDDN
>NZ_LT906460.1|WP_002465058.1|1678178_1679099_-|primosomal-protein-DnaI
MKSFQNIMGSSKDLEQRIAKIKKDVVNDPDVKLFLQQHQSELTNAMIDEDLNVLQEYKDQQKHYDGHTFANCPNFVKGHVPELYIENKRIKIRYLPCPCKIKYDEERFDSQLITSHHMQRDTLNAKLKDIYMTNRERLDVAMAADEICTAITNGDTVKGLYLYGSFGTGKSFILGAIANQLKSKKISSTIVYLPEFIRTLKSGFKDGSFESKLQRVREANVLMLDDIGAEEVTPWVRDEVIGPLLHYRMVHELPTFFSSNFNYNELEHHLAITRDGEEKTKAARIIERIKSLSQPYYLIGENYRNN
>NZ_LT906460.1|WP_002465059.1|1675756_1677697_-|threonine--tRNA-ligase
MEQINIQFPDGNKKAFDKGTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTRPLEEDGTIEIVTPGSEEALEVLRHSTAHLMAQALKRLYGDVKFGVGPVIEGGFYYDFDIEKNISSDDFDEIEKTMKQIVNENYKIKRKVVSREEAKEFFKDDPYKLELIDAIPEDENVTLYSQGEFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSDNKMLQRIYGTAFFDKKDLKAHLEMLEERKERDHRKIGKDLELFANNQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVMANVDLYKTSGHWDHYREDMFPPMQLDETEAMVLRPMNCPHHMMIYKNKPHSYRELPIRIAELGMMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAEAMLKEAVDELGLPYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPQRFDLTYIGQDGEQHQPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVEIIPVNIDLHYDYARQLQDELKSQGVRVNIDDRNEKMGYKIREAQMQKIPYQIVVGDKEVENNEVNVRQYGSQDQETMEKDEFIWNLVDEIRLKKNRK
>NZ_LT906460.1|WP_002465060.1|1673647_1675147_-|amino-acid-permease
MTKVRDESNNGVKRGLKDRHISMIAIGGCIGTGLFVTSGGAIHDAGALGALIGYAIIGAMVFFLMTSLGEMATYLPVSGSFSTYATRFVDPSLGFALGWNYWFNWVVTVAADITIAAQVIQYWTPLQGIPAWVWSSIFLVVIFALNSLSVRIYGESEYWFALIKVITVIFFIAIGLLTILGIMGGEFVGFDTFTKGEGPILGGNLGGSLLSILGVFLIAGFSFQGTELIGITAGESENPERAVPKAIKQVFWRILLFYILAIFVIGMLIPYDSNALMGGDNDIATSPFTLVFKNAGLAFAASFMNAVILTSVLSAGNSGMYASTRMLYSMSKDKLAYPAFGKTNKSGIPLMSLLVTAVVVVIIFVLQTLTDGAYQYIVAASGLTGFIAWVGIAISHYRFRRAFDHQNYDKSKLKYKAKLFPFGPIFAGVLCALVIIGQDVDFIKTGNFDLNRFLITYMGIPVFLVFYIYHKVKYKTKKIPLSEVDLRQEVDMEEIKHHN
>NZ_LT906460.1|WP_002462388.1|1689857_1691525_-|sensor-histidine-kinase
MMKFHHRLMLLISTILIISFITLGLILQFSIGSLINHKQQQSLTQDAQTYIYLSQQNKDHQLEKIAKQQHIDIRIIKNNKDIFKTQDINVNTSNNTNYIHNGKTYTFMKKIDEYQVIIKGINHDINDMQKNLWLYLAIICLVVLICLYFVSQSFKHTFIKPIQEVTYATQLLADGHYHIRVPESNVIEAKELFITTNNLARQLQKLNNEQKIQSNRLKTTIENIPSSVLMIDRYGKVVVANRAYYEQFNINHHIEHERYSNYLHHDIEALILECFKVEKAIYEQLEIPLNNVHTKYFDISCVPILTKSKKSLQGILLVMHDISNLKRLENLRREFVANVSHELKTPITSIKGFTETLIDGAKNNSESLDMFLNIILKESNRIESLISDLLDLSHIEQQDKLEMDYMNLSELTFRIIDNLQTQAMNKHIEIITTITEDVIIQAQESKMAQVITNLLNNAINYSYENGIVNVNVYRNQATTVLEIQDFGIGINEEDIQHIFERFYRVDKARSRDSGGTGLGLSITKHIVESHNASIEVHSEIGKGSIFKVIFNDYMS
>NZ_LT906460.1|WP_002462389.1|1691521_1692226_-|response-regulator-transcription-factor
MSQKVLVVDDEQSIVTLLKYNLETAGYEVAVAFDGDEAMAMVDSEQPDLIVLDVMLPKKDGIEVCKLIRSNKNLVPILMLTAKNDEFDRVLGLELGADDYMTKPFSPREVVARVKAILRRSQFSKNVEEIEEDIQIGAIRIRPEYFEVYKNNELLELTPKEFELLLYLIERQGRVITREHMLNTVWNYEFAGDSRIVDVHISHLRDKLEENPKKPQLIKTVRGLGYKLERPKEQ
>NZ_LT906460.1|WP_002462390.1|1692458_1693727_-|NADP-dependent-isocitrate-dehydrogenase
MTAEKITQGTNGLNVPNEPIIPFIIGDGIGPDIWHAASRVIDAAVDKAYNGDKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKDYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFQGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTDEVKKVIDFLQNEMGAKNIRFPETSGIGIKPVSKEGTERLVRAAIQYALDNDRKSVTLVHKGNIMKFTEGSFKQWGYDLAHNEFGDQVFTWQQYDEIVEKEGKDAANAAQDKAEREGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDAIEDTIASKVVTYDFARLMDGATEVSTSEFADELIKNLK
>NZ_LT906460.1|WP_002462391.1|1693768_1694890_-|citrate-synthase
MAELQRGLEGVIAAETKISSIIDSQLTYAGYDIDDLAEHAQFEEVIFLLWNYRLPNEEELTHLKEKLNYYMTLNPRVYTHFEEYVTDQVHPMTALRTSLSYIAHFDPDAEDESDENRYERAMRIQAKVASLVTAFARVRQDKDPIKPDENLSYAANFLYMLRGEKPNDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMSMLNDIGSIDNVDAYLDNKFANKEKIMGFGHRVYKDGDPRAKYLREMSRKITKDAGQEQLFDMSIKIEKRIADEKGLIPNVDFYSASVYHSMDIPHDLFTPIFAVSRTAGWIAHILEQYRDNRIMRPRAKYIGETDRKYIPLEERK
>NZ_LT906460.1|WP_002462392.1|1695238_1696600_+|amino-acid-permease
MAENLQRGLSNRHIQLIAIGGAIGTGLFLGAGQTIAMTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTDFNSFADVTNKYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPHVPNWISALFCVLVLMTFNLLSAKLFGELEFWFAIIKILTIIALIVVGFFMILFAYKTQFGHASLTNLYNHGVFPKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFTLIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSNQNQAPPSFANTNKNGVPHIAIFASSALLLIAALLNYIFPNATLVFTYVTTISTVLFLVVWGLIIIAYINYSTKNPELHKRATYKLFGGKYMGYFILVFFIFVFGLLFINPDTRRAIYFIPVWFILLGFMYLRYRRIERKLNS
>NZ_LT906460.1|WP_002462393.1|1697026_1698784_-|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLGKTVAILLDTKGPEIRTHNMKNGVIELERGNEVIVSMNEVEGTPDMFSVTYENLINDVQVGSYILLDDGLIELQVKDIDKAKKEVKCDILNSGELKNKKGVNLPGVSVSLPGITDKDADDIRFGIKENVDFIAASFVRRPSDVLEIRELLEEKNANIQIFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAISAEAAQDYKKLLSDRTKLVDTSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPNEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVSNGDLIIITAGVPTGETGTTNMMKIHLVGDEIASGQGIGRGSVVGTTVVAESAKDLEGKDLTDKVIVTSSVDETFVPFIENALGLITEENGITSPSAIVGLEKGIPTIVGVEKAIKNIKNDMLVTIDASQGKIFEGYANVL
>NZ_LT906460.1|WP_002462395.1|1698805_1699774_-|6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAIRAVVRTAIYNEIEVYGVYHGYQGLLDDDIHKLELGSVGDTIQRGGTFLYSARCLEFKKPEVRQIAINNLRKRDIEGLVVIGGDGSYRGAQLISQECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIDLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIMVPEVKTDLKDVAEKIEQGIKRGKKHSIVLVAEGVMTAQECSNELAKFINIDTRVSVLGHIQRGGSPTGADRVLASRLGGYAVELLMNGETAKGVGIKNNKVIATPFDDIFDGNDHKFDLDLYELAKKLSI
>NZ_LT906460.1|WP_002462396.1|1699951_1700896_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLYEIRHKIDSLKESQEKNDVDLQEEIDMLETSLERETKKIYTNLKPWDRVQIARLQERPTSLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGQAVTVVGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLVEMASLTVPVIAIVIGEGGSGGALGIGIANRVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITANDIKQLGIIDQVINEPIGGAHKDVETQALAIKDAFVKQLAELQQFSAEEVAQDRFDKFRNIGSYIE
>NZ_LT906460.1|WP_002462397.1|1700895_1701753_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNEVPAGIMTKCPNCKKIMYTKELAENLNVCFNCDHHIALTADKRIEAISDEGTFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLNEAVITGTAELDGIKYGVAVMDSRFRMGSMGSVIGEKICRIIDYCTEHRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTNPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRKEMRKTLSQILKIHQGVSK
>NZ_LT906460.1|WP_002462398.1|1701883_1703113_-|NAD-dependent-malic-enzyme-4
MSLKDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKAIYEDPRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALDTTDTEEIINTVKLLQPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTMAGLINALRVVNKDLSEIKVVLNGAGAAGIAIVKLLYSYGVRNMIMCDSRGAIFEGRSYGMNETKDVVAKWTNKDKIEGSLEHVIKDADVFIGVSVANALSQEMVRNMATNPIIFAMANPNPEINPDDAKEAGAKVIGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEDMKKAAVEAIADLINSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTIKLTDLQ

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Crispr_ID: NZ_LT906460_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_8

1795566-1795663

Orphan

Consensus_repeat	Method
AAATTTATTTTTGTCACACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_8

>merge|NZ_LT906460|8|1795566-1795663|CRISPRCasFinder
AAATTTATTTTTGTCACACTCCCCTTTTTAAAAATCAAGTCAGTCTTCACATGTATTGCGAAATAAATTTTATGGAAATTTATTTCTGTCACACTCCC

>NZ_LT906460|8|8|1795566-1795663|CRISPRCasFinder
AAATTTATTTTTGTCACACTCCC	CTTTTTAAAAATCAAGTCAGTCTTCACATGTATTGCGAAATAAATTTTATGG
AAATTTATTTCTGTCACACTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002464286.1\|1787393_1788026_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_LT906460.1\|WP_002464276.1\|1796201_1796570_+\|fluoride-efflux-transporter-CrcB	unknown	unknown	gnl\|CDD\|184566
NZ_LT906460.1\|WP_162096506.1\|1802696_1803455_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423
NZ_LT906460.1\|WP_002464287.1\|1786177_1787383_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_LT906460.1\|WP_002464283.1\|1791331_1792189_-\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226656
NZ_LT906460.1\|WP_002464484.1\|1803998_1804250_+\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_LT906460.1\|WP_002464274.1\|1797074_1797908_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381383
NZ_LT906460.1\|WP_002464282.1\|1792419_1792650_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002464278.1\|1794453_1795167_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
NZ_LT906460.1\|WP_002464275.1\|1796563_1796917_+\|CrcB-family-protein	unknown	unknown	gnl\|CDD\|223317
NZ_LT906460.1\|WP_002464272.1\|1799055_1800252_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_LT906460.1\|WP_002464273.1\|1798028_1798937_-\|NERD-domain-containing-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002464288.1\|1785706_1786165_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_LT906460.1\|WP_002464277.1\|1795719_1796022_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002464285.1\|1788033_1789077_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_LT906460.1\|WP_002464280.1\|1793337_1793775_+\|competence-protein-ComK	unknown	unknown	unknown
NZ_LT906460.1\|WP_002464271.1\|1800621_1802214_+\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_LT906460.1\|WP_040802166.1\|1803459_1803933_-\|nucleoside-triphosphatase-YtkD	unknown	unknown	gnl\|CDD\|131752
NZ_LT906460.1\|WP_002464284.1\|1789454_1790975_-\|FAD/NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|226906
NZ_LT906460.1\|WP_002464279.1\|1793767_1794211_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002464286.1\|1787393_1788026_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	3.81667e-87
NZ_LT906460.1\|WP_002464276.1\|1796201_1796570_+\|fluoride-efflux-transporter-CrcB	gnl\|CDD\|184566	PRK14201, PRK14201, fluoride efflux transporter CrcB.	1.8956e-53
NZ_LT906460.1\|WP_162096506.1\|1802696_1803455_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	1.76608e-43
NZ_LT906460.1\|WP_002464287.1\|1786177_1787383_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_LT906460.1\|WP_002464271.1\|1800621_1802214_+\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NZ_LT906460.1\|WP_002464484.1\|1803998_1804250_+\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	2.64441e-42
NZ_LT906460.1\|WP_002464274.1\|1797074_1797908_-\|aldo/keto-reductase	gnl\|CDD\|381383	cd19157, AKR_AKR5G1-3, AKR5G family of aldo-keto reductase (AKR). Bacillus subtilis glyoxal reductase (GR), uncharacterized oxidoreductase YtbE, and Bacillus aryabhattai aldo-keto reductase are founding members of aldo-keto reductase family 5 member G1-3 (AKR5G1-3), respectively. GR (YvgN, EC 1.1.1.283), also called methylglyoxal reductase, reduces glyoxal and methylglyoxal (2-oxopropanal). It is not involved in vitamin B6 biosynthesis.	9.35387e-127
NZ_LT906460.1\|WP_002464275.1\|1796563_1796917_+\|CrcB-family-protein	gnl\|CDD\|223317	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning].	1.41611e-25
NZ_LT906460.1\|WP_002464278.1\|1794453_1795167_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	6.22809e-151
NZ_LT906460.1\|WP_002464272.1\|1799055_1800252_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_LT906460.1\|WP_002464284.1\|1789454_1790975_-\|FAD/NAD(P)-binding-protein	gnl\|CDD\|226906	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown].	2.71739e-121
NZ_LT906460.1\|WP_002464283.1\|1791331_1792189_-\|glucosaminidase-domain-containing-protein	gnl\|CDD\|226656	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].	4.16144e-115
NZ_LT906460.1\|WP_002464285.1\|1788033_1789077_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.73002e-88
NZ_LT906460.1\|WP_040802166.1\|1803459_1803933_-\|nucleoside-triphosphatase-YtkD	gnl\|CDD\|131752	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious, with papers disagreeing in both interpretation and enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it. [DNA metabolism, DNA replication, recombination, and repair].	4.05252e-65
NZ_LT906460.1\|WP_002464288.1\|1785706_1786165_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	1.26926e-89

>NZ_LT906460.1|WP_002464278.1|1794453_1795167_-|transaldolase
MVKLNVEVFADGADIEQMKAAYKNKEVDGFTTNPSLMAKAGVTNYKAFAEEAVKEIPDASISFEVFADDLETMEKEAEILKQYGDNVFVKIPIVNTKGESTIPLIKKLSANNVRLNVTAVYTIEQVKEITDAVTEGVPTYVSVFAGRIADTGVDPLPLMKESVAVTHSKKGVKLLWASCREVINVIQADEIGADIITCPADVVKKVNTNLGRDIEELSVDTVKGFAKDIQSSGLSIL
>NZ_LT906460.1|WP_002464279.1|1793767_1794211_-|hypothetical-protein
MNKSTFDKKVKKQLWFLNKNEKRELDNHLTQLDDSESNHFNKPIAYSNDYLRHHVFNESSAKSYNTFLLLVGIVFTYVCLLGLFLFGLITSLTGVQFFIQPKVNLSTTTVILTIIGAVLLMIVSIYLIKTVTAFFTKKLLQAKFNSK
>NZ_LT906460.1|WP_002464280.1|1793337_1793775_+|competence-protein-ComK
MNNFSTNELLYIKTSTSKQLSTDCVYTHYSYSLPYSIHKVLNYYLKLHFKSLDLQTEYAKRILKINKLIPIYINPQVILFPIKQKRAPIQYYINARQIIGINVKRNVTIINFNNAISLEVDEPHTLVMKKCQESLILSQLITQTI
>NZ_LT906460.1|WP_002464282.1|1792419_1792650_-|hypothetical-protein
MDYAHLNLEHFFARNDDLDIIRDRSDFVMINNFTNEMMYRDGQIEGTIDLNQYYYKNRSSAASFIMMDYKRDITGN
>NZ_LT906460.1|WP_002464283.1|1791331_1792189_-|glucosaminidase-domain-containing-protein
MNKHKKGSIFAIIGLVIIFAVVAFLFFSMISDQIFFKHVKSDVKIEKLNVTLKDAAKKQINNYTSQQVSNKENTAWRDASGTEIKSAMDSSKFIDDKKQKYQFLDLSKYQGIDKNRIKRMLIDRPTLLKHTDAFLDAAKDKHVNEVYLISHALLETGAVKSELANGVEIDGKKYYNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAINGGADFIHKHFLSNKDQDTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYQNMKTEGKYFKYFVYKDDSNHLDKK
>NZ_LT906460.1|WP_002464284.1|1789454_1790975_-|FAD/NAD(P)-binding-protein
MRVAIIGMGTAGVSVLRALVKHPKFKNLHVDLYDDKVNMGQGVPFQNDSSELLINMPSKTMSLNLDDDQEFWKWYQQQHDFHFDDPTYLPRFVFGHYMKSYVSMFNEQYDNITTIYHKVKGVYTNSNIDETTLKYYVCTTANRDEWHEYDYLFLTCGTFAYHDPYELKGKPGYIPTPYPTYNTLDNVQSNDDIAIIGTGLASLDVVRYVAAHHPKLPITMTSRSANLPSVRGEMIPITFNHLTKHRFNLIKQDNYGNVPLDTAVTLFLKECDDYGVDFKKLVERRTGNHIADLTYDLERPQELGAFQSIIEYLKENLNWIWNSFSLEDQKLFNKQYTKMIQLNSNPMPPRTAKLIIDLIRDESLIIKKGLEHVSYQDESFVFSYQGYPDDEQFNVVINATGSKTHLSQLDEDDQLILNLENRQIVQAHPMGGIQIIPETNQVVSPRYGTLTNVIAIGQMTNGVNKLRNGVKMIVEQVDNTVSQLYTSLAQFERNQQKVNTTENDKS
>NZ_LT906460.1|WP_002464285.1|1788033_1789077_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MSQFMKYAIQLAKMVDGQTGVNPPVGSVVVKDGRIVGIGAHLQKGDKHAEVQALDMAGTQAKEATIYITLEPCSHYGSTPPCVNKIIDAQISKVIYATKDQSLKTHGDDILHAHGIEVDYQYDEEAASLCQHFFKAKAQQIPEITVKVAASLDGKQANDNGQSQWITNKEVKQDVYQLRHKHDAVLTGRGTLELDNPQYTTRFADGKNPIKIILSRSGDLDFRQQLFQDTSTAIWIYTENPNLTTDQENIDITYLQQCHLTTILQDIYQKGVGKLLVEAGPHTTSEFLQSDYIDEFILYFAPKLIGGAGTYQYYQTDDVFNIPESNQFEIVHSELINQNIKLILRKK
>NZ_LT906460.1|WP_002464286.1|1787393_1788026_-|riboflavin-synthase
MFTGIVEEIGTVTNVRMHQSVRTLDIKAHKITEDMHIGDSISVNGACLTVIDFNESSFSVQVIQGTENKTYLADIAKQSEVNLERAMSGSGRFGGHFVLGHVDELGKISKIKENANSRIVTIQCSSTVLNQLVKQGSITVDGVSLTVFDKHASAFDIHLIPETRRSTILATKKLGDNVHLETDVLFKYVENILSQDRSQLTFDKLKSFGF
>NZ_LT906460.1|WP_002464287.1|1786177_1787383_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MHFDNIESALEALKNGQSIIVVDDEDRENEGDLVAVTEWMNDDTINFMAKEARGLICAPISKEIAQRLELHQMVSDNSDIYGTKFTVSIDHKETTTGISANERTLTAKKLIDPSTVASDFNRPGHLFPLVAEDEGVLVRTGHTEAAIDLAKLTNAQPAGVICEIMNDDGTMAKGQQLQNFKEKHQLKMITIASLIAYRQQHQQHMINQSNIDIQMKAKVKMPTDFGTFDMYGFTTSTSNEEIVVLAKGGIRSVENVRLHSSCLTGDIFHSQRCDCGAQLEASMQYIEEHGGMIIYLPQEGRGIGLINKLRAYELIEQGYDTVTANLALGFDEDLRDYYIAAQILKYFKVAHINLLSNNPSKFEGLQHYGIDIKQRIEVIVPETEHNHHYMETKKLKMGHLI
>NZ_LT906460.1|WP_002464288.1|1785706_1786165_-|6,7-dimethyl-8-ribityllumazine-synthase
MNFEGKLVGKDLKVAIVVSRFNDFITGRLLEGAKDTLIRHEVESDNIDVAYVPGAFEIPLVAKKLAKSNKYDAVITLGCVIRGATSHYDYVCNEVAKGVSKVNDETEVPVIFGILTTESIEQAVERAGTKAGNKGAEAAVSAIEMANLLKSF
>NZ_LT906460.1|WP_002464277.1|1795719_1796022_+|hypothetical-protein
MSRSKKFFYLSCLMIIISFFFNTNNDLLSTIFPSIVKLIFVCSIVNTVILILAILFADRSIKALKPNSDWIRVASKSLPWIILVVIVIHALSMIHTFGII
>NZ_LT906460.1|WP_002464276.1|1796201_1796570_+|fluoride-efflux-transporter-CrcB
MTYLYIFIGGAIGALLRFSLSTLNHDSTFPIGTLVANLIGALLMGLFTAISINLFNNHPTLKKAITTGLLGALTTFSTFQVELVQMMEQHQFLLSLCYALTSYIFGILLCYCGMKIGGKIKC
>NZ_LT906460.1|WP_002464275.1|1796563_1796917_+|CrcB-family-protein
MLNIIYILIGGGLGAVARAAITDYWNTHHHSSLPIATLIVNLIGSIMISILLGLSIHNPILSNLIITGFLGGLTTFSTLSKELVEMLTTKFNISHFITYSLLQFVVGFIACYIGYHI
>NZ_LT906460.1|WP_002464274.1|1797074_1797908_-|aldo/keto-reductase
MQYKKFYNGNRIPQVGLGTFRVENNDECNEAVKFAIEEGYRSIDTAKVYGNEEKVGEGIRLALESTGLKREDLFITSKLYFEDFGRENVQPAYQASLDRLGLDYLDLYLMHWPGTNEAIMINTWKGMEDLYKNSQLKNIGVSNFEVEHLEALLAQVSFKPVINQVECHPYLNQHKLRHYLEAQHIVMESWSPLMNAQILSDDTIQQIAQTHRRSAAQIIIRWNVQHGIVTIPKSVTPNRIIENINVFDFELTDDEMTQIDNLNKNQRIGPDPKIFEG
>NZ_LT906460.1|WP_002464273.1|1798028_1798937_-|NERD-domain-containing-protein
MDFSSPIVIGLIAAVVIALIFFVLYLVALGSKKKVKRQTEEKYEQKEQNIKKTHEEQLEKERIENKKTITKQQEDYNEMVSTKDREIDALKLFSKNHSEYVTDMRLIGIRERLVKEKRIRPEDMHIMANIFLPSNKFNDIERISHLVLTRTGLYIIDSQLLKGHVYNGISGGQFKDLPPMEQVFKTLDLDASRPQTIIMDQNDDQKSLSFVNYSDKLESIKQLAEDLQKELGTKYTPTSILYFNPKNDGDVTISNYNQNAAVKVLVGKEQLDEFFNKFVFHGRIQYNVDDLQNIMDKIESFN
>NZ_LT906460.1|WP_002464272.1|1799055_1800252_-|methionine-adenosyltransferase
MLYNKRLFTSESVTEGHPDKIADQVSDAILDAILKDDPNARVACETTVTTGMALIAGEISTTTYVDIPKVVRETIKDIGYTRAKYGYDYETMAILTAIDEQSPDIAQGVDQALEYRDNSSEEEIEATGAGDQGLMFGFATNETDSYMPLAIDLSHKLAKRLSDVRKDHILDYLRPDGKVQVTVEYDEQDHPVRIDTIVVSTQHAEDVTLEQIQQDIKTHVIYPTVPENLLDEHTKFYINPTGRFVIGGPQGDAGLTGRKIIVDTYGGYARHGGGCFSGKDPTKVDRSAAYAARYVAKNIVAAGLAAQCEVQLAYAIGVAEPVSIAIDTFGSGKVSEGQLVEAVRKHFDLRPAGIINMLDLKQPIYKQTAAYGHFGRTDVLLPWEKLDKVNELKDAVQQ
>NZ_LT906460.1|WP_002464271.1|1800621_1802214_+|phosphoenolpyruvate-carboxykinase-(ATP)
MSVDSYTESTKIDNLLKKPSSLFQLSTTQLYNKILDNDEGVLTELGAVNASTGKYTGRSPKDKFIVTEPSYRDNIDWGTINQPIDEETFLSLYHKVLDYLDQKDELYVFNGYAGSDKDTMLKLTVINELAWHNLFAKNMFIRPESKEEASKIKPNFTIVSAPHFKADPKVDGTNSETFVIISFKHKVILIGGTEYAGEMKKGIFSVMNYLLPMQDIMSMHCSANVGEKGDVALFFGLSGTGKTTLSADPKRKLIGDDEHGWNKNGVFNIEGGCYAKAIHLSKEKEPQIYDAIKYGTILENTVVAEDGSVNFDDNRYTENTRAAYPINHIDNIVVPSKAAHPNTIIFLTADAFGVIPPISKLNKKQAMYHFLSGFTSKLAGTERGVTEPEPSFSTCFGAPFLPLHPTVYADLLGELIDQHDVDVYLVNTGWTGGKYGVGRRISLHYTRRMVNQAISGKLKHAEYTKDSTFGLSIPVEIEDVPKTILNPINAWSDSDKYKAQAQDLIQRFENNFEKFGKEVEHIASQGGFNK
>NZ_LT906460.1|WP_162096506.1|1802696_1803455_-|prolyl-oligopeptidase-family-serine-peptidase
MPVTSFDHQFDEVTYVVDHLNVKALMMTPFTEVKRIVVYLRGGKGQVGRVRAARLMQFADKHTLVIGPYYRGNNGSEGKDEFYRGDLNDVTTLIRLLHSKYPDAFIHMIGFSRGGLQGLLTFQELPVNSYIIWGGVSDIKLMYEERIDLRGMLRRMVGHPQKDKVQYEARDAIHLLNRQSPPILIVHGEKDQQVGIHQAYYLEQQLSQKGVTYDTFYQQDEGHVPRPPALKEALNYIKSFMTKVETNQLTNR
>NZ_LT906460.1|WP_040802166.1|1803459_1803933_-|nucleoside-triphosphatase-YtkD
MKFWDKDQRLVELTYKTDSNDADGNHVLAIPVYNNQLLFTNHKIRGIEFPGGKREDFETSVDAVKRELYEETGATVKSLHYIAQYHIATAADETFIKDVYFIDVDEINEKYDYMETTGPVLFNNINDISKEQQSYLLQDETILTCLERVIALGFYQN
>NZ_LT906460.1|WP_002464484.1|1803998_1804250_+|membrane-protein-insertion-efficiency-factor-YidD
MKKIFLALIHFYQRFISPLTPPTCRFYPTCSEYTREAIQYHGAFKGLYLGIRRILKCHPLHKGGFDPVPLKKNRTKHSHHNHD

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Crispr_ID: NZ_LT906460_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_9

1885858-1885999

Orphan

Consensus_repeat	Method
AAATTTTTCTATGACGGGTCCCT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LT906460_9

>merge|NZ_LT906460|9|1885858-1885999|CRISPRCasFinder
AAATTTTTCTATGACGGGTCCCTTGCCCAACTATGCCCGTCTTGCACATAAAAGAAAAAATTTTATTTTTAAAATTTCTCTATGACGGGTCCCTGCGTTGTCTGAAAAAACTGACTAACCAGTTTTTTTGTGTTGGGTCCCT

>NZ_LT906460|9|9|1885858-1885999|CRISPRCasFinder
AAATTTTTCTATGACGGGTCCCT	TGCCCAACTATGCCCGTCTTGCACATAAAAGAAAAAATTTTATTTTTA
AAATTTCTCTATGACGGGTCCCT	GCGTTGTCTGAAAAAACTGACTAAC
CAGTTTTTTTGTGTTGGGTCCCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002464186.1\|1876416_1877214_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_088177468.1\|1882043_1883015_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_LT906460.1\|WP_002463263.1\|1883493_1884012_-\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153228
NZ_LT906460.1\|WP_002464449.1\|1888890_1889166_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227313
NZ_LT906460.1\|WP_002464444.1\|1893262_1893649_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002463267.1\|1884549_1885701_+\|radical-SAM/CxCxxxxC-motif-protein-YfkAB	unknown	unknown	gnl\|CDD\|275271
NZ_LT906460.1\|WP_002464452.1\|1886813_1888058_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
NZ_LT906460.1\|WP_002464445.1\|1892546_1893248_-\|transporter	unknown	unknown	gnl\|CDD\|227100
NZ_LT906460.1\|WP_002464188.1\|1875089_1876067_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_LT906460.1\|WP_002464448.1\|1889461_1890679_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_LT906460.1\|WP_088177495.1\|1888072_1888273_-\|DUF1128-family-protein	unknown	unknown	gnl\|CDD\|227177
NZ_LT906460.1\|WP_002464453.1\|1886213_1886744_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|224523
NZ_LT906460.1\|WP_002464182.1\|1878754_1879069_-\|YfhH-family-protein	unknown	unknown	gnl\|CDD\|378063
NZ_LT906460.1\|WP_002464447.1\|1890887_1891517_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_LT906460.1\|WP_002464181.1\|1879046_1879865_-\|recombination-regulator-RecX	unknown	unknown	gnl\|CDD\|237619
NZ_LT906460.1\|WP_002464446.1\|1891506_1892550_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_LT906460.1\|WP_002464450.1\|1888419_1888884_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_LT906460.1\|WP_002463265.1\|1884145_1884307_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002463259.1\|1880521_1881331_-\|monofunctional-peptidoglycan-glycosyltransferase-SgtB	unknown	unknown	gnl\|CDD\|184078
NZ_LT906460.1\|WP_002464184.1\|1877222_1878740_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224057

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002464453.1\|1886213_1886744_-\|acyl-CoA-thioesterase	gnl\|CDD\|224523	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism].	1.77119e-61
NZ_LT906460.1\|WP_088177468.1\|1882043_1883015_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	1.57984e-69
NZ_LT906460.1\|WP_002463263.1\|1883493_1884012_-\|type-1-glutamine-amidotransferase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	7.35734e-75
NZ_LT906460.1\|WP_002464449.1\|1888890_1889166_+\|hypothetical-protein	gnl\|CDD\|227313	COG4980, GvpP, Gas vesicle protein [General function prediction only].	0.00348802
NZ_LT906460.1\|WP_002463267.1\|1884549_1885701_+\|radical-SAM/CxCxxxxC-motif-protein-YfkAB	gnl\|CDD\|275271	TIGR04478, radical_SAM_superfamily_domain_protein, radical SAM/CxCxxxxC motif protein YfkAB. Members of this highly conserved family in some Firmicutes have an N-terminal radical SAM domain (pfam04055) and a C-terminal pfam08756 domain with a CxCxxxxC motif that suggests binding to an additional metallocluster. It appears all correct sequences in this family are about 370 amino acids in length, containing the YfkA and YfkB regions originally reported as separate ORFs in Bacillus subtilis. Partial Phylogenetic Profiling shows occurrences almost exclusively in the Bacilli, with very few examples of either lateral transfer or gene loss. The essentially monophyletic distribution suggests a housekeeping function. Members have no well-conserved gene neighborhood. The function is unknown. [Unknown function, Enzymes of unknown specificity].	0
NZ_LT906460.1\|WP_002464452.1\|1886813_1888058_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
NZ_LT906460.1\|WP_002464445.1\|1892546_1893248_-\|transporter	gnl\|CDD\|227100	COG4758, COG4758, Predicted membrane protein [Function unknown].	1.74467e-71
NZ_LT906460.1\|WP_002464188.1\|1875089_1876067_+\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	3.31886e-37
NZ_LT906460.1\|WP_002464448.1\|1889461_1890679_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	2.76082e-85
NZ_LT906460.1\|WP_088177495.1\|1888072_1888273_-\|DUF1128-family-protein	gnl\|CDD\|227177	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown].	2.76711e-22
NZ_LT906460.1\|WP_002464182.1\|1878754_1879069_-\|YfhH-family-protein	gnl\|CDD\|378063	pfam08838, DUF1811, Protein of unknown function (DUF1811). This is a bacterial family of uncharacterized proteins. Some of the proteins are annotated as being transcriptional regulators. The structure of one of the proteins in this family has revealed a beta-barrel like structure with helix-turn-helix like motif.	1.25808e-43
NZ_LT906460.1\|WP_002464447.1\|1890887_1891517_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.64601e-79
NZ_LT906460.1\|WP_002464181.1\|1879046_1879865_-\|recombination-regulator-RecX	gnl\|CDD\|237619	PRK14135, recX, recombination regulator RecX; Provisional.	1.32032e-105
NZ_LT906460.1\|WP_002464446.1\|1891506_1892550_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.30984e-69
NZ_LT906460.1\|WP_002464450.1\|1888419_1888884_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	9.46108e-63
NZ_LT906460.1\|WP_002463259.1\|1880521_1881331_-\|monofunctional-peptidoglycan-glycosyltransferase-SgtB	gnl\|CDD\|184078	PRK13481, PRK13481, glycosyltransferase; Provisional.	5.59341e-149
NZ_LT906460.1\|WP_002464184.1\|1877222_1878740_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224057	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane].	3.23175e-64

>NZ_LT906460.1|WP_002463267.1|1884549_1885701_+|radical-SAM/CxCxxxxC-motif-protein-YfkAB
MNSVNIKQPISIYNDPWEAYNDMQQYDKLTLSNIEFTTTNLCNMRCSHCAVGYTLQTSDPEPLDMDLIYRRLDEIPHLRTMSITGGEPMFSKKSIRNVVKPLLKYAHERGIYIQMNSNLTLPQDRYLDIAEYIDVMHISHNWGTTDEFATVGFGAMQKQPPLKAKLKLYDQMIENARTLSEQGMFVSAETMLNQSTLPYLQKIHHEIVHDMKCSRHEIHPMYPADFASQLNVLSLAEMKKAINDLLDFRNEDIWMLFGTLPVFPCLNDDNDQQLLRRLRTARNVTTRNDPDGRSRLNVNVFTGNVIVTDFGDETGTISNIKQDKLTDVFDKWLNSNLAQSLNCHCSQFNCLGPNILVKNMYYPNMDFKENERMMHSKPQIVQQ
>NZ_LT906460.1|WP_002463265.1|1884145_1884307_-|hypothetical-protein
MDEQQTIDQIKTRLNKFIEDIDHVNPDEVRVEDIDEWIGLLDQLEEKMKQVSK
>NZ_LT906460.1|WP_002463263.1|1883493_1884012_-|type-1-glutamine-amidotransferase
MTKKVAVILANEFEDIEFTSPKEALENAGFETEVIGDTANSEVVGKHGEKVNVDVSIADAKPEHYDALLIPGGFSPDHLRGDAEGRYGTFAKYFTKNDVPAFAICHGPQILIDTDDLNGRTLTAVLNVRKDLSNAGAQVVDESVVVDNNIVTSRTPDDLDDFNREIVKQLQD
>NZ_LT906460.1|WP_088177468.1|1882043_1883015_-|ABC-transporter-substrate-binding-protein
MLSACSTNSNDKKDEKQKTVTIKQTYEFKEKNKDHNKGKVKTEMTKVPVNPKRVAVMDYGALDVMKSLKLQNRIVAVSKGQGSSLLPESLNEFKDKKYTNLGNPGKPDYDQLAKTKPELIFASFRQAHTQTLDEMKKAAPKAKIVFVSPDNDNYLQSIKHNTKNIGKIFNKEQQTDKLITKLNNKVEDTKKVINDERVLFLNVDDKGIKVFADSGRFGGFLNKNLGIRHADSNMKPNSSGTIISNEYLEKLNPDKIFVIDRTKNSTQHKKQIPQALNNPVIKNVKAIKQHNVTPFDSNTWFFGEGGINLTIEQLDNIQKAYQK
>NZ_LT906460.1|WP_002463259.1|1880521_1881331_-|monofunctional-peptidoglycan-glycosyltransferase-SgtB
MKRSDRYASSTKHLEHNTREPHYNTYYQPVGKPPKKKKSKRIILKITVFILVIIAIFFGVMYFLASRDNVDDLKKIENKSDFVAANNMPDYVKGAFISMEDERFYKHHGFDIKGTTRALFSTISDHDVQGGSTITQQVVKNYYYDNGRSFTRKVKELFVAHRVEKQYSKDEILSFYLNNIYFGDNQYTIESAANHYFGATVNKNNTMMPHLTVLQSAILASKVNAPSVYDINDMSNNFRQRISTNLEKMKQQAYISNAQYQEAMSQLNH
>NZ_LT906460.1|WP_002464181.1|1879046_1879865_-|recombination-regulator-RecX
MPTISKLEVQKKNKERFNLYLDGQFEMGIDIDTLVKFNLKKGQQLEVSDMQHIQQYDHYRKGLNTAIQYLSYKKRTAKEVRQYLAKAEISEQAIDEVINYCYQEKLIDHVDYAESLKNTMIRTTDKGPEIYRQKLFQVGVEPSIIDQYTELYKEQQPLEDIIAIANKIMKTKKGPVTKVKQKVMQSLMQKGFDMETIQQVLSEMNFEQDEAVLDDLLQRDLEKVYSKLRKKYDQRKLIHKTIEALMRKGYKYDKIKAKLEESGIVDGTEEIE
>NZ_LT906460.1|WP_002464182.1|1878754_1879069_-|YfhH-family-protein
MEQKKLSEMSEQELRHEIQQYKEKMRKAEMNGILNEYDVYQSKVIVAESYLVDRNKIEIGKIYKLNDGSNQYFKVERLKGIFAWGFRFNSNEPEEGLPIALLQL
>NZ_LT906460.1|WP_002464184.1|1877222_1878740_-|ABC-transporter-ATP-binding-protein
MASSIVLKLLKVTHYYRNKRNHKWYLPFGYGAEDIELNNVSLHIYQGEVLGIIGEPESSKTLVGQILGGAINPDKGKVVCKDDIFYSYIEDHKAINQTIENYVAQIVELFNYQINDHKAEQIIHYAHLHDIKERKVSDLTKEQYAQLVLSIARSSKSNIIILNHILTYLSEQFMERALELADDYIDNNQTIVFIDDDVNKIEQVSNYIAWFSHGQLRMEGSLKQVLPVFKEHERDRQSLTDEEEIKNYDLDWKKSRSRIPEMTYNFKRIERYNHAKPPQFLIRFWTIVTTSLLGMLLMAALIFNSSGIISFADNTNRNAIENENKDPYVDKLAYGIAFEGSVTLDGDKSVTLPKYSVVTITGENSKNYKVSSDNKTFIVNKNKLDYFNPAGLYQSHSMKKLAPFMKSNYSNYIDYFNSQLHKQHSSVTKTLVPSDDNRYVAPITQQPIDMLFNDNNQLYGFVYPIVDKAKFKDKFNVNSNIWIAKVGNGYCIANMKENKWIYIEL
>NZ_LT906460.1|WP_002464186.1|1876416_1877214_-|hypothetical-protein
MLDQIISYFKNLPHSVRFTIKRLKTTWPLFIALIALCALLLIVFELVVHFGNLSDVREARWMLRIISFIVYLCIIFAIYKGYQYYAKDFVLMQSFNLSATIPIVVIVILSMVSLTVVTTFASVLKPINFETSIIALLFYIVLSAIFINTLSVTIGLLKLIFRNVDVIFYVCSLINIVILPIVLMPNPNQMLLNHILMLNPFYYLVNGMSQSVMFGVTSMENIPYHFYFIFIIVLLLVINFALARYTTHAIYKQHTKESTVTESVE
>NZ_LT906460.1|WP_002464188.1|1875089_1876067_+|metal-dependent-hydrolase
MDTATHIAMGIGLTALATQDPAMAGTFGATATTLIIGSLIPDGDTVLKLKDNATYISHHRGITHSIPFTILWPILITFLIFTFFKGVEPLHIWMWAQLAVFLHVFVDIFNSYGTQALRPITNKWIQLSVINTFDPIIFIILCLGIVLWIIGVHPFIVFFPIIAILIIYYIIRFKMRSTIKKQALQTIQQEHHPIKIFVAPTMKFMEWRVAIQTDEYDYVGLARGRNVVFSDKVKRQGLTTDSLLWKVKGNKDIRTFLNFSSIYRWQTTDLGDGTTEIRLIDLRYLKNNHYSFVAIAHLTTDNIIDHSYIGWVFTEDKLQRKLYSH
>NZ_LT906460.1|WP_002464453.1|1886213_1886744_-|acyl-CoA-thioesterase
MSKNDRPMKSMSASKCYKNRQVFPQDTNHHHTMFGGTLMANIDEIAAITAMKHAGAQVVTASTDSVDFLKPIKTGDILQYVAMVSYAGTSSMEVVVQIRIDDVFNNTQELAALSFLTFVALDDNDRPKHVPGVYPEDDVEKWFFETAPQRVERRKARRIESKQTIEYLSKVQHIND
>NZ_LT906460.1|WP_002464452.1|1886813_1888058_-|aminopeptidase
MTNYQHKLQQYAELLVKVGLNVQPEQPVFIRSSVETLELTHLIVAEAYKNGASDVRVEYSDPTLKRLKYENEPETYFMTNDVKQYDVDARMDYVSRGAANLALISEDPYLMEGIDSNKLQAAQQQYSSAYKGYMEGVQKNAFPWVVAAFPSKAWAHRVYPDLPVEEAYSKFIDEVFEIVRVDGQDPIENWQQHIKNLSVYSNKLQQKNYKALHYVSEGTDLVVGLPENHIWEDATSYVNHNGPSFIANIPTEEVFTAPDRLRVNGYVTNKLPLSHNGTIIDGFTLTFENGEIIRVQAQQGEEVLKDLINTDEGSKYLGEVALVPYDSPISNKNTIFYNTLFDENASCHLAIGSAYGFNVKGGTEMTTEEKLASGLNDSNVHVDFMIGSSDLNIYGILEDGREELVFKDGNWADF
>NZ_LT906460.1|WP_088177495.1|1888072_1888273_-|DUF1128-family-protein
MTNEDKVLAIRQKLNIVNQGLLDPEKYKNANEEEITEIYDFVQSRDRLSPSEVTAIADALGQLRQD
>NZ_LT906460.1|WP_002464450.1|1888419_1888884_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MIDVAFVCLGNICRSPMAEAIMRQRLQDRQINDIKVHSRGTGSWNLGEPPHKGTQQILDQHHIPYKGIISELFEPTDDFDYIIAMDQSNVDNIKSINPNLKGQLFKLLEFSNMKESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVKDANLKEG
>NZ_LT906460.1|WP_002464449.1|1888890_1889166_+|hypothetical-protein
MKNKLVPGMLIGAVIGGVATLADKSTRDSLVQSFKDAKNGNRSRKPSKITNIKDEVLYWKDVVEEIRRNNPELERSLKDAKDTFVNRKNQR
>NZ_LT906460.1|WP_002464448.1|1889461_1890679_+|YihY/virulence-factor-BrkB-family-protein
MSKKDSTSSKFLNSIKNNQDNHNSQKSSSSKIKVDRTYVEPQQFQSKDTKKDDQVLFVSRLNKPAKYKKDSNFLSYLIYRIGKDDASGLAAQMTYHFVLALFPMLIFLLTLLPFFNIKQSQITEMLSNAPADTSTLIKGVINDVTQNSSGGLLSVGLILAIWSASNGMTAIMNSFNVAYDVEDSRNGIVLKLLSVLFTIVMGVVFVVALALPTLGSVISHFLFGPLGLDDEVRWIFNLIRIGLPIIIIFIVFIVLYSVAPNVKTKIKSVLPGAIFTSVIWLVGSFGFGWYISNFGNYSKTYGSIAGIIILLLWLYITSFIIIVGAEINAIIHQRNVIKGKTPEEAALQHDDNNQNHYNEDTKYQYNNDASNTHDTKYHIDKHPEEEYPEDDKNIAKKIVDKFKKD
>NZ_LT906460.1|WP_002464447.1|1890887_1891517_-|response-regulator-transcription-factor
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGESGKDAISKAHDLNPDLILMDLLMEDMDGVEATTQIKKDLPHIKVLMLTSFIEDNEVYRALDAGVDSYILKTTSAKDIADAVRKTYNGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ
>NZ_LT906460.1|WP_002464446.1|1891506_1892550_-|sensor-histidine-kinase
MNHYIRTIGSMLILVYSMLAAFFFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNLIIIFLCIIVGSILAYKINQQNEWIKTQIERSIEGETVGINDQNIELYSETIELYHTLVPLNQELHKLRLKTQNLTNENYNINDVKVKKIIEDERQRLARELHDSVSQQLFAASMMLSAIKETTLEPPLDQQIPILEKMVQDSQLEMRALLLHLRPLGLKDKSLGEGIKDLVVDLQKKVPMKVVHEIQEFKVPKGIEDHLFRITQEAISNTLRHSDGTKVTVELFNKEDYLLLRIQDNGKGFDMNDEVKQSYGLKNMEERALEIGATFHIISMPDAGTRIEVKAPLNKEDSYDD
>NZ_LT906460.1|WP_002464445.1|1892546_1893248_-|transporter
MTHKYISTQMLIIFTALMIIANFYYIFFEKIGFLLVLLLGCVLVYVGYLYFHKIRGLLAFWIGALLIAFTLLSNKYTIIILFLFLLLLMIRYLIYKFKPMKVVATEETMSSPSFIKQKWFGEQKTPVYVYKWEDVQIQHGIGDLHIDLTKAANIKENNTIVVRHILGKVQVLVPINYNINLHMAAFYGSAYVNDKSYKVENDNIHIEEIVKTDNYTINIYVSTFIGDVEVVYR
>NZ_LT906460.1|WP_002464444.1|1893262_1893649_-|hypothetical-protein
MNYVEHYINNFLKATVKNNIVDYRMVLDEKLKNLEGYIKYLTDKKAQLSKLIDSLMFTLENKYIDIADKYEVSCVSEINHLEIERIKAQLNSIETYYARIEAEIKLQSQERLTTENECYLINYMNAVA

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Crispr_ID: NZ_LT906460_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906460_10

2314799-2314899

Orphan

Consensus_repeat	Method
GCATAAGAGCTCCTAACAACCGTAGATTGTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906460_10

>merge|NZ_LT906460|10|2314799-2314899|CRISPRCasFinder
GCATAAGAGCTCCTAACAACCGTAGATTGTAAGATTCAATAGTTTACATGCGTCTTTTCATTCCTCATGCATAAGAGCTCCTAACAATCGTAGATTGTAAG

>NZ_LT906460|10|10|2314799-2314899|CRISPRCasFinder
GCATAAGAGCTCCTAACAACCGTAGATTGTAAG	ATTCAATAGTTTACATGCGTCTTTTCATTCCTCAT
GCATAAGAGCTCCTAACAATCGTAGATTGTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906460.1\|WP_002464757.1\|2302818_2303235_-\|DUF2871-domain-containing-protein	unknown	unknown	gnl\|CDD\|378551
NZ_LT906460.1\|WP_002464678.1\|2307993_2309436_-\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NZ_LT906460.1\|WP_002464688.1\|2320423_2321146_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_LT906460.1\|WP_002464691.1\|2323257_2323707_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|379056
NZ_LT906460.1\|WP_002464685.1\|2317144_2317588_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_LT906460.1\|WP_002464677.1\|2306891_2307836_+\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NZ_LT906460.1\|WP_002464692.1\|2323725_2324403_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_LT906460.1\|WP_002464683.1\|2314927_2316205_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|183075
NZ_LT906460.1\|WP_002464674.1\|2303783_2304563_-\|glucose-1-dehydrogenase	unknown	unknown	gnl\|CDD\|187610
NZ_LT906460.1\|WP_002464676.1\|2306220_2306850_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_LT906460.1\|WP_002464682.1\|2314041_2314611_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	unknown
NZ_LT906460.1\|WP_002464689.1\|2321519_2322173_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_LT906460.1\|WP_002464690.1\|2322195_2323230_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_LT906460.1\|WP_002464681.1\|2313437_2313860_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226389
NZ_LT906460.1\|WP_002464680.1\|2311270_2313376_+\|AraC-family-transcriptional-regulator-Rsp	unknown	unknown	gnl\|CDD\|225117
NZ_LT906460.1\|WP_002464687.1\|2319530_2320445_+\|metallopeptidase	unknown	unknown	gnl\|CDD\|227791
NZ_LT906460.1\|WP_002464684.1\|2316388_2316754_-\|DUF3139-domain-containing-protein	unknown	unknown	gnl\|CDD\|371476
NZ_LT906460.1\|WP_002464686.1\|2317992_2319162_-\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_LT906460.1\|WP_002464675.1\|2304788_2306066_-\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_LT906460.1\|WP_002464679.1\|2309591_2309963_+\|DUF1722-domain-containing-protein	unknown	unknown	gnl\|CDD\|377982

Protein	Function_ID	Function_description	E-value
NZ_LT906460.1\|WP_002464757.1\|2302818_2303235_-\|DUF2871-domain-containing-protein	gnl\|CDD\|378551	pfam11070, DUF2871, Protein of unknown function (DUF2871). This family of proteins has no known function.	7.01784e-48
NZ_LT906460.1\|WP_002464678.1\|2307993_2309436_-\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_LT906460.1\|WP_002464688.1\|2320423_2321146_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	7.16389e-34
NZ_LT906460.1\|WP_002464691.1\|2323257_2323707_-\|GAF-domain-containing-protein	gnl\|CDD\|379056	pfam13185, GAF_2, GAF domain.	8.68877e-07
NZ_LT906460.1\|WP_002464685.1\|2317144_2317588_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.42091e-20
NZ_LT906460.1\|WP_002464677.1\|2306891_2307836_+\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	5.8677e-108
NZ_LT906460.1\|WP_002464692.1\|2323725_2324403_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	3.88868e-109
NZ_LT906460.1\|WP_002464683.1\|2314927_2316205_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	1.37926e-169
NZ_LT906460.1\|WP_002464674.1\|2303783_2304563_-\|glucose-1-dehydrogenase	gnl\|CDD\|187610	cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs. NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser).	1.35073e-98
NZ_LT906460.1\|WP_002464676.1\|2306220_2306850_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.30491e-11
NZ_LT906460.1\|WP_002464689.1\|2321519_2322173_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.18161e-77
NZ_LT906460.1\|WP_002464690.1\|2322195_2323230_-\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.4717e-69
NZ_LT906460.1\|WP_002464681.1\|2313437_2313860_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	6.77443e-45
NZ_LT906460.1\|WP_002464680.1\|2311270_2313376_+\|AraC-family-transcriptional-regulator-Rsp	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.58906e-19
NZ_LT906460.1\|WP_002464687.1\|2319530_2320445_+\|metallopeptidase	gnl\|CDD\|227791	COG5504, COG5504, Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones].	3.97398e-72
NZ_LT906460.1\|WP_002464684.1\|2316388_2316754_-\|DUF3139-domain-containing-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	1.65829e-08
NZ_LT906460.1\|WP_002464686.1\|2317992_2319162_-\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	1.17413e-119
NZ_LT906460.1\|WP_002464675.1\|2304788_2306066_-\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	6.16177e-51
NZ_LT906460.1\|WP_002464679.1\|2309591_2309963_+\|DUF1722-domain-containing-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	5.48654e-18

>NZ_LT906460.1|WP_002464682.1|2314041_2314611_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKKLSILGATTLAGTILFTGIGHQAQAAEQLNMNNAKDIAIKASSNDQAKKASFSPEGNSDIANPAYTTTKSGNDYIFSSPEGAYTYRLTNDGKLYITTKYDGKEHFISQENVEESSQQATQKQAPNNNQVTNETPQHINQSQQQVQSQATVLPTTGKDEVNSSLVTSIATVLLAVGSLLTFKRFSNNK
>NZ_LT906460.1|WP_002464681.1|2313437_2313860_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MDKAQVTTAITNVLDTSKVGVLATAYNNKPNSRYMVFYNDGLTLYTKTNINSTKVKEIKENPAAYVMLGYNDTTNHSFVEMEATIEVVTDQKVINWLWETQDKSFFDSENDPELCVLKVVPKQVKLMNDKDLDTPATIEL
>NZ_LT906460.1|WP_002464680.1|2311270_2313376_+|AraC-family-transcriptional-regulator-Rsp
MTCQLYIHRTLSTVPRRNINHIIILFSLTNQCRITINGATKEVNNHIVLINHSDIYHIDEGDNIVELSIPVYYFFRQNNNFFNGYLDRYLLQSTNYIKSVFADIIHNDQAHSKIESKICQLIVDTLLNETFVKIEQEYLPNIALTNPVFIECLNYIHDHIQSHLSLRDIAMNCNISESYCSNLFVRYLNMNFKDYFTSIKIAKAINLLLSTDHSINTVAELAGFNSHTNFANQFKNYLNFSPKQFRTLLSKLTHTPHIQYSSDNVAQFANLIATIDLTAQVATNNTTINIDDFNPKDRSQRANVFVRFNTFNELFQFIFNEYYDINFEYLPKPVILIDDISDIEMSQTNYNLLNRCFEKLFEKNIGLAICIKSTTQFETLRQLILTFLQVNQDYNKNKKSVKFILVFCSKHMTADEIHLCHLKIKNKNKNIKYSITVDGLLEKYHTISQTYDVMKRLNFNYYFIDIESAETTHQLISKSHHFHQTDTHFEHYKTFILESGIPSTKFVYNDLTKSGFKYTNGGKNPLQLSDLVCHLIALLRYGGGISYQLLDDHTHHLSLYNKYGSPLPLVHLYKMMAPFVNEDIEITNNYLLSRKDNNYHFLLFNKIHDRYLSDVQQTFSFYNQLPSDSLMISHTLNHEHGSIEHLLPASKHLVYIEKDILDALDKSNYPKTELAVQEEDNKTFVVKLNQEEVKYICFKSC
>NZ_LT906460.1|WP_002464679.1|2309591_2309963_+|DUF1722-domain-containing-protein
MKERGLVEKLWREEKYHVLLHSQQYYNDIRQRLKTNISLTELEQLIHQALLLSPSTGSVINAYDHMWGYFKTLATEEEKRKAQDLKQRHVADAIPYSTLLHYLAILADKYHVSYLQQSKVLKK
>NZ_LT906460.1|WP_002464678.1|2307993_2309436_-|PTS-sucrose-transporter-subunit-IIBC
MDYNKSAEEILKAIGGEENLDAMAHCSTRLRLVLNDESKVDEQALSNLDVVKGTFSTGGQYQIIIGAGTVNKVFAELEKLTGKEASTTSDVKAQSAKNMNPLQRFVKMLSDIFVPIIPAIVAGGLLMGLNNILTAKDLFFAGKSLIDVYSQFAGLADMINVFANAPFTLLPILIGFSAAKRFGGNPFLGAALGMILVHPGLMSAYDFPKAVEAGKSIPYWDVLGLHINQVGYQGQVLPMLVAAYILAVIEKSIRKVIPAVLDNLLTPLLSIFITAFLTFLFVGPITRQLGYWLSDGLTWLYEFGGAIGGLIFGLLYAPIVITGMHHSFIAVETTLIADAAKTGGSFIFPIATMSNMAQGGAAIAAFFIIKQNKKLKGVASAAGISAVLGITEPAMFGVNLKLRYPFIGAIIGSGIGSAYIAFFKVKAIALGTAGIPGFISINPVHSGWLHYFIGMIISFTIAIVVTFVLSKRKANKEITE
>NZ_LT906460.1|WP_002464677.1|2306891_2307836_+|magnesium-transporter-CorA-family-protein
MITSFRHSEDVDKHIIETPLDHTASWINVVEPEREEIEMLIEQYNIPEDFIRDPLDSEESARIEYDEDSGYSLIIIDLPMINSTNRSVLSFVTMPLGIIIGNGIIMTVCDAENEFLENFSRRDINLKYHSRFALEILITISNHYNRNLRLLNKSRIRIEKELKNNITNKQLFKLMEVEKSLVYFLAALKGNDTIIKKLFRLPAIKRFEEDEELLEDLIIENNQAIETTELHQRILESITTSYASLLSNDMNTIMKTLTLFTVLLTLPTLVFSFFGMNVPLPIDDHSYVSWLIVVGISLILVVIVSIFLWRKQKL
>NZ_LT906460.1|WP_002464676.1|2306220_2306850_+|TetR/AcrR-family-transcriptional-regulator
MKEDRRVRKTKSSIKKAFTKLLQEKDLDKITISDITTRADVNRGTFYLHYEDKYMLLADMEDEYIAELSSYTKFNELQGASVEDIANEFVNNVLKNIFQHIHNNLEFYHTILQLERTSQLELKINEHIRKNMQKYISIDHTVGGVPEMYFYSYVSGATISIIKYWVLDDQPISVDELAKHIHNIVFNGPLRIMAKNRLHKSHVELQSKE
>NZ_LT906460.1|WP_002464675.1|2304788_2306066_-|YhgE/Pip-domain-containing-protein
MNIFKNKLLWIAPIAIMLILVIFSIAFYPAYNPKPKDLPIGIMNNDKGTTIQDKDINIGKKIEDKLMDSDSDKIKWVKVDNKKDLDKDLKDEKIYGVAIFDKDFSKDAMSKTQKVVMDSKKEEMKEKVESGEIPPQVVQQMQKKMGNQKVDVKQGQFKTIVSEGSSMQGSQIATSVLTGMGDNVNNQITKQSLDTLKKQNVKVNAADIDGITNPVKIDNVKVNKVKDHQAGGNAPFLMFMPVWMGSIVTSVLLFFAFRTSNNIKIQHRIIASVGQMLFAVISAFAGSFAFIYFMKGVLGFDFEHPNRIATFVALALLGFVGLILGVMVWLGLKSVPIFFILMFFSMQLVTLPKAMLPEGYQKYGYDWNPFTHYAGTVREIVYLNHPIELNSTMWMFIGFMIFGAVSSLISAIVRKHSNKRTEVPS
>NZ_LT906460.1|WP_002464674.1|2303783_2304563_-|glucose-1-dehydrogenase
MTILDKFKLNDKVAIVTGGASGLGKAMGLALAEAGANLVIADMNLEVGQQTAQEFEQATGNKAIACKVDVTNEDEVNAMVKETMDTFGHIDILFNNAGINEHVDFEDMPYERWKKTMDVNLNSMVLVTNAVGKVFREQQSGVIVNTSSMSGIIVNTPQPQAAYNTSKAAVIMLTKSLANEWAKHNIRVNTIAPGYMKTELTKDYFAQGGEMIDTWMNMTPMQRPGVPEELQGAALYLASDASSFVTGSVVTVDGGYTAL
>NZ_LT906460.1|WP_002464757.1|2302818_2303235_-|DUF2871-domain-containing-protein
MRRLLYSFLFYMIIGLVSGFYYRELTKAYDFTGDTQLSLVHTHTLILGMFMFLLIIPLEKLFKLTSYYLFNWFFYVYHISVITTIGLMLIKGSFQVTGKAYSPEALAGFAGIGHTGMLAALLLLFFLLRQAIIKEPRD
>NZ_LT906460.1|WP_002464683.1|2314927_2316205_-|cation:dicarboxylase-symporter-family-transporter
MALFKRKISLPMQVVIALVLGVVVGLLLYGQENVANYIKPFGDVFLNLIKMIVIPVVFCSLALSISNVGESKTVGRYGWKTILYFEVITTIAIGLGIIFGNLFHPGSGLDPSKLPKGDISKYQSSAHAAEQTTYGNHFIDTIVNIIPTNFFEALNKGELLPIIFFAVFFGLGLAAVGKKGEPVKEFLSGTLEAVFWMINKILKLAPLGVFAFICTTIITFGASALLPLLKLVLVVVFAMFFFVFVVLGFVAWLCGINIMNIIRILKSEILLAFSTSSSEAVLPIMMKKMEHFGSPKDITSFVIPIGYTFNLDGSALYQSIAALFVAQMYGMHLTLSEQIVLMLTLMITSKGMAAVPGTSIVVLLTTLGAMGLPAQGLALIIGVDRILDMVRTCVNVIGNALSTVVIARWENVYDKKKGQEYLESI
>NZ_LT906460.1|WP_002464684.1|2316388_2316754_-|DUF3139-domain-containing-protein
MSRKQIITRVVIILVISLIVAVAFFFCLKTYQGHKNIAMIDSYLEEKNLKDKVKTQDTLYSAKKGIYYKEITFKDDPGVTYIVQPISTYKGIFVEGFDSETKKSLKHAKHKYFSQTYKPSK
>NZ_LT906460.1|WP_002464685.1|2317144_2317588_+|MarR-family-transcriptional-regulator
MYVENSYLSKQICFLFYVSSKEIIKKYTTYLKEYDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVIRTREEKDERNLQISLTKQGQEIKKPLADISLKVYDEFNITSDEATELVHSLRNFVSKNFDTPSK
>NZ_LT906460.1|WP_002464686.1|2317992_2319162_-|NarK/NasA-family-nitrate-transporter
MYKTKGGFQLTLQTLSLVVGFMAWSIIAPLMPYISQDVKVSAGQISIILAIPVILGSILRVPFGYLTNIIGAKWVFFCSFIVLLFPIFFLSTAQTPGMLMLSGLFLGVGGAIFSVGVTSVPKYFPKEKVGLANGIYGMGNIGTAVSSFLAPPIAGIIGWQTTVRTYLIIIALFALIMFIFGDAKERKVKVPLMAQMKSLSKNYKLYYLSLWYFITFGAFVAFGLFLPNYLVNHFGIDKVDAGIRSGIFIALATFLRPLGGVLGDKFNAVKVLMIDFVVMIIGAVILGISDHIALFTVGCLTISICAGIGNGLIFKLVPSYFSNEAGSANGIVSMMGGLGGFFPPLVITYIASLTGSSHPAFILLAVFGVLALITMGHLYKKEYGSLKVK
>NZ_LT906460.1|WP_002464687.1|2319530_2320445_+|metallopeptidase
MYQLNIYKTDQIYNHLLSLPVEERNNYFINNLINPFEGKFNAQHIPLKAQSNNFVDALFMLNQIQLSPEKLSNSDLQHIKHLNDDFWLDCDKYFDHALKAFADKHIFSKIKHYHFTALLGDKTKPAMYLNNNYLGDGGIPGYIIIYLIPNIYTLSKLKGVITHEVNHNVRYQYIDWDGGSLKELVVAEGLAENFVEHLYGKNALGPWVTAINWQDNKQSIKNIINTHLDITDLVSAMPYLYGDDITTAQGGQAVGLPHAAGYTYGYYLIKYFLAKTNIPIEEATILPAETILNEVTEFWNITTH
>NZ_LT906460.1|WP_002464688.1|2320423_2321146_+|MerR-family-transcriptional-regulator
MEYNYTLTDIIKITDVTKRTLHYYDEIGLLTPVKNNKNYRIYTQDHLITLQKILIFKSLDFTIKQIKELLTYDDRNLTTIIAKQRDVLDRKIAHLASMQCAIDQLIKGVPMSELNILNKPLTQQYQIEAKLKYGHTTSYQSFKQKHSGDSFNTDQIKAMEAVFDLFNDLSISKCSLKKAQSAVLQWKNLLQQYADFDDTTLRCIAQTYQTDERFNDYFKRYDNPKLTDYIVNAVNYHLNV
>NZ_LT906460.1|WP_002464689.1|2321519_2322173_-|response-regulator-transcription-factor
MKIVIADDHAVVRTGFSMILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGESGLIATSKIAESFPETKILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVTNSNQDIENSSDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
>NZ_LT906460.1|WP_002464690.1|2322195_2323230_-|sensor-histidine-kinase
MINEDSIQLEALLKKYYENSIEKIVFVDDLGKIIAMNNAAKDILSEEDNYSAMTNAICRRCEGYTNEYDLQSCKDCFLESLQVQTSNFQVFMKTKDHKIMPFTATYQTIDPVKGIHAFTLQNVSSQIERQEKLHQQRMMRKTISAQENERKRISRELHDSVIQEMLNVDVQLRLLKYQEDKSQLLDSAENIECLVTKLIDDIRNMSVELRPASLDDLGLEAAFKSYFKQFEENYGVKINYTSNIKNMRFDSEVETVVYRIVQEAILNALKYADVNDINVVIQQTGRHLIAEIEDYGNGFDPSSKPKGSGLGLYGMNERAELVNGRVNIETEIGKGTNVTLNIPI
>NZ_LT906460.1|WP_002464691.1|2323257_2323707_-|GAF-domain-containing-protein
MTPEAIIQNRSFQETLDNIRTHEGYDFAAIAFYESKKPSAPIKWHYVSGNQNNRFKLIILRKGHGLAGTVMKTGKRMVIANVGLALSPEEKIDYPILLSENLTAVFALPLWYNNQVYGVLLFGQRDGTPLPKIIDHYDIQHKFGIFNEE
>NZ_LT906460.1|WP_002464692.1|2323725_2324403_-|respiratory-nitrate-reductase-subunit-gamma
MLNQFLWVIYPYLCLAIFIFGHLARYRYDQFSWTAKSSELIEKKRLMWGSLLFHLGIIPVFFGHVVGLLIPKSWMEAFGVTEHLYHIGAVYIGSIFGIITLVGMFLLTARRVTTKSIRRLSSASDIFVNFLLLLIVFMGCYATLVTNAQHPEFNYRTSLSIWFRQLLMFKPDAAMMNSVPIGFKIHVLLGFTIMACWPFTRLVHVWSVPLSYINRRYIIYRKNKV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT906460_1	1.1\|369522\|43\|NZ_LT906460\|CRISPRCasFinder	369522-369564	43	NZ_LT906460.1	163419-163461	0	1.0
NZ_LT906460_1	1.1\|369522\|43\|NZ_LT906460\|CRISPRCasFinder	369522-369564	43	NZ_LT906460.1	598739-598781	0	1.0
NZ_LT906460_1	1.1\|369522\|43\|NZ_LT906460\|CRISPRCasFinder	369522-369564	43	NZ_LT906460.1	1535057-1535099	0	1.0
NZ_LT906460_1	1.1\|369522\|43\|NZ_LT906460\|CRISPRCasFinder	369522-369564	43	NZ_LT906460.1	77669-77711	0	1.0
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_LT906460.1	1810465-1810494	0	1.0
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	163431-163476	0	1.0
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	598751-598796	0	1.0
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	1303021-1303066	0	1.0
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	1535069-1535114	0	1.0
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	2007591-2007636	0	1.0
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	77654-77699	0	1.0
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	163419-163466	0	1.0
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	598739-598786	0	1.0
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	1535057-1535104	0	1.0
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	77664-77711	0	1.0
NZ_LT906460_1	1.1\|369522\|43\|NZ_LT906460\|CRISPRCasFinder	369522-369564	43	NZ_LT906460.1	2245559-2245601	1	0.977
NZ_LT906460_1	1.1\|369522\|43\|NZ_LT906460\|CRISPRCasFinder	369522-369564	43	NZ_LT906460.1	296859-296901	1	0.977
NZ_LT906460_6	6.1\|1154070\|39\|NZ_LT906460\|CRISPRCasFinder	1154070-1154108	39	NZ_LT906460.1	767546-767584	1	0.974
NZ_LT906460_6	6.1\|1154070\|39\|NZ_LT906460\|CRISPRCasFinder	1154070-1154108	39	NZ_LT906460.1	767613-767651	1	0.974
NZ_LT906460_6	6.1\|1154070\|39\|NZ_LT906460\|CRISPRCasFinder	1154070-1154108	39	NZ_LT906460.1	767680-767718	1	0.974
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	296844-296889	1	0.978
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	296854-296901	1	0.979
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	163490-163514	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	369593-369617	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	598810-598834	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	2007650-2007674	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	2493330-2493354	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	77616-77640	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	819118-819142	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	1636963-1636987	1	0.96
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_LT906460.1	2266310-2266334	1	0.96
NZ_LT906460_1	1.1\|369522\|43\|NZ_LT906460\|CRISPRCasFinder	369522-369564	43	NZ_LT906460.1	1910361-1910403	2	0.953
NZ_LT906460_5	5.1\|744998\|45\|NZ_LT906460\|CRISPRCasFinder	744998-745042	45	NZ_LT906460.1	745126-745170	2	0.956
NZ_LT906460_6	6.1\|1154070\|39\|NZ_LT906460\|CRISPRCasFinder	1154070-1154108	39	NZ_LT906460.1	486278-486316	2	0.949
NZ_LT906460_6	6.1\|1154070\|39\|NZ_LT906460\|CRISPRCasFinder	1154070-1154108	39	NZ_LT906460.1	490254-490292	2	0.949
NZ_LT906460_6	6.1\|1154070\|39\|NZ_LT906460\|CRISPRCasFinder	1154070-1154108	39	NZ_LT906460.1	767747-767785	2	0.949
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	1083968-1084013	2	0.957
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	819156-819201	2	0.957
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	1265603-1265648	2	0.957
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	1910346-1910391	2	0.957
NZ_LT906460_7	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	NZ_LT906460.1	2567357-2567402	2	0.957
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	1083956-1084003	2	0.958
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	819166-819213	2	0.958
NZ_LT906460_9	9.1\|1885881\|48\|NZ_LT906460\|CRISPRCasFinder	1885881-1885928	48	NZ_LT906460.1	1910356-1910403	2	0.958

1. spacer 1.1|369522|43|NZ_LT906460|CRISPRCasFinder matches to position: 163419-163461, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	Protospacer
*******************************************

2. spacer 1.1|369522|43|NZ_LT906460|CRISPRCasFinder matches to position: 598739-598781, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	Protospacer
*******************************************

3. spacer 1.1|369522|43|NZ_LT906460|CRISPRCasFinder matches to position: 1535057-1535099, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	Protospacer
*******************************************

4. spacer 1.1|369522|43|NZ_LT906460|CRISPRCasFinder matches to position: 77669-77711, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	Protospacer
*******************************************

5. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to position: 1810465-1810494, mismatch: 0, identity: 1.0

attttattcccactaattggggtcagctca	CRISPR spacer
attttattcccactaattggggtcagctca	Protospacer
******************************

6. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 163431-163476, mismatch: 0, identity: 1.0

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	Protospacer
**********************************************

7. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 598751-598796, mismatch: 0, identity: 1.0

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	Protospacer
**********************************************

8. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 1303021-1303066, mismatch: 0, identity: 1.0

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	Protospacer
**********************************************

9. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 1535069-1535114, mismatch: 0, identity: 1.0

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	Protospacer
**********************************************

10. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 2007591-2007636, mismatch: 0, identity: 1.0

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	Protospacer
**********************************************

11. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 77654-77699, mismatch: 0, identity: 1.0

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	Protospacer
**********************************************

12. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 163419-163466, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	Protospacer
************************************************

13. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 598739-598786, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	Protospacer
************************************************

14. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 1535057-1535104, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	Protospacer
************************************************

15. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 77664-77711, mismatch: 0, identity: 1.0

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	Protospacer
************************************************

16. spacer 1.1|369522|43|NZ_LT906460|CRISPRCasFinder matches to position: 2245559-2245601, mismatch: 1, identity: 0.977

tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	CRISPR spacer
tgcccaactttgcccgtcttgcacataaaagaaaaaattttat	Protospacer
********* *********************************

17. spacer 1.1|369522|43|NZ_LT906460|CRISPRCasFinder matches to position: 296859-296901, mismatch: 1, identity: 0.977

tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	CRISPR spacer
tgcccaactatgcccgtcttgcacatataagaaaaaattttat	Protospacer
*************************** ***************

18. spacer 6.1|1154070|39|NZ_LT906460|CRISPRCasFinder matches to position: 767546-767584, mismatch: 1, identity: 0.974

ataaaggaatacaattgattgctagcgcaacaattgcat	CRISPR spacer
ataaaggaatacaattgcttgctagcgcaacaattgcat	Protospacer
***************** *********************

19. spacer 6.1|1154070|39|NZ_LT906460|CRISPRCasFinder matches to position: 767613-767651, mismatch: 1, identity: 0.974

ataaaggaatacaattgattgctagcgcaacaattgcat	CRISPR spacer
ataaaggaatacaattgcttgctagcgcaacaattgcat	Protospacer
***************** *********************

20. spacer 6.1|1154070|39|NZ_LT906460|CRISPRCasFinder matches to position: 767680-767718, mismatch: 1, identity: 0.974

ataaaggaatacaattgattgctagcgcaacaattgcat	CRISPR spacer
ataaaggaatacaattgcttgctagcgcaacaattgcat	Protospacer
***************** *********************

21. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 296844-296889, mismatch: 1, identity: 0.978

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaattttttcttatatgtgcaagacggg	Protospacer
****************************** ***************

22. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 296854-296901, mismatch: 1, identity: 0.979

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacatataagaaaaaattttattttta	Protospacer
*************************** ********************

23. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 163490-163514, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

24. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 369593-369617, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

25. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 598810-598834, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

26. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 2007650-2007674, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

27. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 2493330-2493354, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

28. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 77616-77640, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

29. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 819118-819142, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

30. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 1636963-1636987, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

31. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to position: 2266310-2266334, mismatch: 1, identity: 0.96

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcattgtctgaaaaaactgactaac	Protospacer
**.**********************

32. spacer 1.1|369522|43|NZ_LT906460|CRISPRCasFinder matches to position: 1910361-1910403, mismatch: 2, identity: 0.953

tgcccaactatgcccgtcttgcacataaaagaaaaaattttat	CRISPR spacer
tgcccaactatgcccgtcttgcacattaaagtaaaaattttat	Protospacer
************************** **** ***********

33. spacer 5.1|744998|45|NZ_LT906460|CRISPRCasFinder matches to position: 745126-745170, mismatch: 2, identity: 0.956

atgcaattgttgcgctagcaatcaattgtaatcatttaaagcaac	CRISPR spacer
atgcaattgttgcgctagcaaccaattataatcatttaaagcaac	Protospacer
*********************.*****.*****************

34. spacer 6.1|1154070|39|NZ_LT906460|CRISPRCasFinder matches to position: 486278-486316, mismatch: 2, identity: 0.949

ataaaggaatacaattgattgctagcgcaacaattgcat	CRISPR spacer
ataaagggttacaattgattgctagcgcaacaattgcat	Protospacer
*******. ******************************

35. spacer 6.1|1154070|39|NZ_LT906460|CRISPRCasFinder matches to position: 490254-490292, mismatch: 2, identity: 0.949

ataaaggaatacaattgattgctagcgcaacaattgcat	CRISPR spacer
ataaaggattacaattgattgctagcacaacaattgcat	Protospacer
******** *****************.************

36. spacer 6.1|1154070|39|NZ_LT906460|CRISPRCasFinder matches to position: 767747-767785, mismatch: 2, identity: 0.949

ataaaggaatacaattgattgctagcgcaacaattgcat	CRISPR spacer
ataaaagaatacaattgcttgctagcgcaacaattgcat	Protospacer
*****.*********** *********************

37. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 1083968-1084013, mismatch: 2, identity: 0.957

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttataactaaaattttttcttttatgtgcaagacggg	Protospacer
************ ** ******************************

38. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 819156-819201, mismatch: 2, identity: 0.957

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttataactaaaattttttcttttatgtgcaagacggg	Protospacer
************ ** ******************************

39. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 1265603-1265648, mismatch: 2, identity: 0.957

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttataactaaaattttttcttttatgtgcaagacggg	Protospacer
************ ** ******************************

40. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 1910346-1910391, mismatch: 2, identity: 0.957

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttaaaaataaaatttttactttaatgtgcaagacggg	Protospacer
************************** **** **************

41. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to position: 2567357-2567402, mismatch: 2, identity: 0.957

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttataactaaaattttttcttttatgtgcaagacggg	Protospacer
************ ** ******************************

42. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 1083956-1084003, mismatch: 2, identity: 0.958

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttagttata	Protospacer
****************************************** ** **

43. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 819166-819213, mismatch: 2, identity: 0.958

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacataaaagaaaaaattttagttata	Protospacer
****************************************** ** **

44. spacer 9.1|1885881|48|NZ_LT906460|CRISPRCasFinder matches to position: 1910356-1910403, mismatch: 2, identity: 0.958

tgcccaactatgcccgtcttgcacataaaagaaaaaattttattttta	CRISPR spacer
tgcccaactatgcccgtcttgcacattaaagtaaaaattttattttta	Protospacer
************************** **** ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906460_9	9.2\|1885952\|25\|NZ_LT906460\|CRISPRCasFinder	1885952-1885976	25	NZ_CP040853	Lactobacillus murinus strain V10 plasmid unnamed, complete sequence	52211-52235	2	0.92
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP046304	Staphylococcus hominis strain FDAARGOS_746 plasmid unnamed1, complete sequence	13308-13337	4	0.867
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP043848	Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence	26137-26166	4	0.867
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NC_029119	Staphylococcus phage SPbeta-like, complete genome	72488-72517	4	0.867
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP009047	Staphylococcus epidermidis strain SEI plasmid unnamed, complete sequence	32504-32533	5	0.833
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP051645	Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence	24308-24337	5	0.833
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	KC821606	Cellulophaga phage phi12:2, complete genome	2296-2325	7	0.767
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NC_014508	Enterococcus faecalis plasmid pEF-01, complete sequence	13489-13518	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_KX274135	Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence	44515-44544	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	MK798157	Enterococcus hirae strain fas4 plasmid pfas4-1, complete sequence	15095-15124	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP028839	Enterococcus faecalis strain FC plasmid unnamed4, complete sequence	9628-9657	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	MN831412	Enterococcus faecalis strain M18/0011 plasmid pM18/0011, complete sequence	16698-16727	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP037957	Enterococcus hirae strain CQP3-9 plasmid pCQP3-9_2, complete sequence	10671-10700	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP038165	Enterococcus faecium strain HB2-2 plasmid pHB2-2, complete sequence	7289-7318	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP038167	Enterococcus faecium strain SC3-1 plasmid pSC3-1, complete sequence	22280-22309	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP038171	Enterococcus faecium strain SDGJP3 plasmid pSDGJP3, complete sequence	34875-34904	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP038169	Enterococcus faecium strain SCBC1 plasmid pSCBC1, complete sequence	10121-10150	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP038162	Enterococcus faecium strain GZ8 plasmid pGZ8, complete sequence	29360-29389	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP038176	Enterococcus faecium strain HN11 plasmid pHN11, complete sequence	65308-65337	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	MT074685	Enterococcus faecium strain T-E1077-31 plasmid pT-E1077-31, complete sequence	11080-11109	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	MT074685	Enterococcus faecium strain T-E1077-31 plasmid pT-E1077-31, complete sequence	25012-25041	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP038173	Enterococcus faecium strain YN2-1 plasmid pYN2-1, complete sequence	13576-13605	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	MT074684	Enterococcus faecium strain E1077 plasmid pE1077-23, complete sequence	11088-11117	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_MH784601	Enterococcus faecium strain 25 plasmid pC25-1, complete sequence	38436-38465	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_MH784602	Enterococcus faecium strain 27 plasmid pC27-2, complete sequence	33144-33173	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_MK140642	Enterococcus faecalis strain E076 plasmid pE076, complete sequence	2853-2882	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_MK140641	Enterococcus faecalis strain E035 plasmid pE035, complete sequence	33287-33316	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_MK861852	Enterococcus faecalis strain C10 plasmid pC10, complete sequence	16048-16077	8	0.733
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	MG869617	Polaromonas sp. E3S plasmid pE3SP1, complete sequence	37065-37094	9	0.7
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP010676	Phaeobacter gallaeciensis strain P75 plasmid pP75_c, complete sequence	69449-69478	9	0.7
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NC_023139	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_C110, complete sequence	69607-69636	9	0.7
NZ_LT906460_2	2.1\|372631\|30\|NZ_LT906460\|CRISPRCasFinder	372631-372660	30	NZ_CP010591	Phaeobacter gallaeciensis strain P11 plasmid pP11_c, complete sequence	69449-69478	9	0.7

1. spacer 9.2|1885952|25|NZ_LT906460|CRISPRCasFinder matches to NZ_CP040853 (Lactobacillus murinus strain V10 plasmid unnamed, complete sequence) position: , mismatch: 2, identity: 0.92

gcgttgtctgaaaaaactgactaac	CRISPR spacer
gcgttgtctgaaaaaattgacaaac	Protospacer
****************.**** ***

2. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP046304 (Staphylococcus hominis strain FDAARGOS_746 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.867

attttattcccactaattggggtcagctca	CRISPR spacer
atataattcccactaattggggtcagtcca	Protospacer
** * *********************..**

3. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP043848 (Staphylococcus epidermidis strain NCCP 16828 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.867

attttattcccactaattggggtcagctca	CRISPR spacer
atataattcccactaattggggtcagtcca	Protospacer
** * *********************..**

4. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NC_029119 (Staphylococcus phage SPbeta-like, complete genome) position: , mismatch: 4, identity: 0.867

attttattcccactaattggggtcagctca	CRISPR spacer
atataattcccactaattggggtcagtcca	Protospacer
** * *********************..**

5. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP009047 (Staphylococcus epidermidis strain SEI plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.833

attttattcccactaattggggtcagctca	CRISPR spacer
atataattcccactaattggggtcagtcta	Protospacer
** * *********************...*

6. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP051645 (Staphylococcus caprae strain SY333 plasmid pSY333-41, complete sequence) position: , mismatch: 5, identity: 0.833

attttattcccactaattggggtcagctca	CRISPR spacer
atataattcccactaattggggtcagtcta	Protospacer
** * *********************...*

7. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to KC821606 (Cellulophaga phage phi12:2, complete genome) position: , mismatch: 7, identity: 0.767

attttattcccactaattggggtcagctca	CRISPR spacer
attgtattcccattaattggggttgatgca	Protospacer
*** ********.**********.... **

8. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NC_014508 (Enterococcus faecalis plasmid pEF-01, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

9. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_KX274135 (Staphylococcus arlettae strain SA-01 plasmid pSA-01, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

10. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to MK798157 (Enterococcus hirae strain fas4 plasmid pfas4-1, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

11. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP028839 (Enterococcus faecalis strain FC plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

12. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to MN831412 (Enterococcus faecalis strain M18/0011 plasmid pM18/0011, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

13. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP037957 (Enterococcus hirae strain CQP3-9 plasmid pCQP3-9_2, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

14. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP038165 (Enterococcus faecium strain HB2-2 plasmid pHB2-2, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

15. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP038167 (Enterococcus faecium strain SC3-1 plasmid pSC3-1, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

16. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP038171 (Enterococcus faecium strain SDGJP3 plasmid pSDGJP3, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

17. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP038169 (Enterococcus faecium strain SCBC1 plasmid pSCBC1, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

18. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP038162 (Enterococcus faecium strain GZ8 plasmid pGZ8, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

19. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP038176 (Enterococcus faecium strain HN11 plasmid pHN11, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

20. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to MT074685 (Enterococcus faecium strain T-E1077-31 plasmid pT-E1077-31, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

21. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to MT074685 (Enterococcus faecium strain T-E1077-31 plasmid pT-E1077-31, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

22. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP038173 (Enterococcus faecium strain YN2-1 plasmid pYN2-1, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

23. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to MT074684 (Enterococcus faecium strain E1077 plasmid pE1077-23, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

24. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_MH784601 (Enterococcus faecium strain 25 plasmid pC25-1, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

25. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_MH784602 (Enterococcus faecium strain 27 plasmid pC27-2, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

26. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_MK140642 (Enterococcus faecalis strain E076 plasmid pE076, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

27. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_MK140641 (Enterococcus faecalis strain E035 plasmid pE035, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

28. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_MK861852 (Enterococcus faecalis strain C10 plasmid pC10, complete sequence) position: , mismatch: 8, identity: 0.733

attttattcccactaattggggtcagctca	CRISPR spacer
caccaactcccactaattgaggtcagttca	Protospacer
  .. *.************.******.***

29. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to MG869617 (Polaromonas sp. E3S plasmid pE3SP1, complete sequence) position: , mismatch: 9, identity: 0.7

attttattcccactaattggggtcagctca	CRISPR spacer
ccaactgtccaactaattggggtcagttca	Protospacer
 .  .  *** ***************.***

30. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP010676 (Phaeobacter gallaeciensis strain P75 plasmid pP75_c, complete sequence) position: , mismatch: 9, identity: 0.7

attttattcccactaattggggtcagctca	CRISPR spacer
ccgccgattccactaattggagtcagctca	Protospacer
 . ... *.***********.*********

31. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NC_023139 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_C110, complete sequence) position: , mismatch: 9, identity: 0.7

attttattcccactaattggggtcagctca	CRISPR spacer
ccgccgattccactaattggagtcagctca	Protospacer
 . ... *.***********.*********

32. spacer 2.1|372631|30|NZ_LT906460|CRISPRCasFinder matches to NZ_CP010591 (Phaeobacter gallaeciensis strain P11 plasmid pP11_c, complete sequence) position: , mismatch: 9, identity: 0.7

attttattcccactaattggggtcagctca	CRISPR spacer
ccgccgattccactaattggagtcagctca	Protospacer
 . ... *.***********.*********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

215797 : 276852

Streptococcus_phage(38.46%)

holin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157738314.1\|215797_216982_-\|transposase	IS110 family transposase	A0A1X9I619	Streptococcus_phage	4.4e-61	36.8
WP_002464223.1\|217364_218120_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	3.6e-08	24.9
WP_002464224.1\|218234_218918_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_002464225.1\|219058_219295_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_002464226.1\|219370_221218_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.8e-88	32.1
WP_002464227.1\|221358_221475_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_088177485.1\|222044_222155_-\|transposase	transposase	NA	NA	NA	NA
WP_002464229.1\|223212_223812_-	phosphoglucomutase/phosphomannomutase family protein	A0A1X9I671	Streptococcus_phage	1.0e-29	42.0
WP_002464230.1\|224158_224395_+	hypothetical protein	D7RWE8	Brochothrix_phage	2.6e-05	48.9
WP_002464232.1\|224901_227334_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_095092550.1\|227364_230271_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_002464233.1\|230525_230777_+	hypothetical protein	NA	NA	NA	NA
WP_142380913.1\|230742_231834_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	6.4e-43	35.6
WP_002462571.1\|232011_233490_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002462572.1\|233654_234791_+	MFS transporter	NA	NA	NA	NA
WP_002462573.1\|235108_235780_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_002462574.1\|236019_236376_-	DUF488 family protein	NA	NA	NA	NA
WP_002462575.1\|236494_236923_+	6-carboxytetrahydropterin synthase	NA	NA	NA	NA
WP_002462576.1\|237052_237232_-	hypothetical protein	NA	NA	NA	NA
WP_002462577.1\|237260_238406_-	nitric oxide dioxygenase	NA	NA	NA	NA
WP_002462578.1\|239014_239968_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_002462579.1\|240262_241204_+	nucleoside hydrolase	NA	NA	NA	NA
WP_040801522.1\|241469_242921_+	SulP family inorganic anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	2.4e-117	48.7
WP_002462581.1\|243210_244188_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_002461629.1\|244625_246038_-	sucrose-6-phosphate hydrolase	NA	NA	NA	NA
WP_002461628.1\|246063_247341_-	MFS transporter	NA	NA	NA	NA
WP_002461626.1\|249202_251284_+	transcription antiterminator	NA	NA	NA	NA
WP_002461624.1\|251283_251751_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_002461623.1\|251791_252070_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_002461622.1\|252189_253449_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_002461621.1\|253466_254501_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_002461620.1\|254517_254664_+	hypothetical protein	NA	NA	NA	NA
WP_002461619.1\|254687_255734_+	galactitol-1-phosphate 5-dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	1.3e-13	26.6
WP_002461617.1\|255977_256847_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.3e-73	48.8
WP_002461615.1\|257030_258518_+	glycosyltransferase	NA	NA	NA	NA
WP_002461613.1\|258584_260222_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.2e-96	37.1
WP_002461612.1\|260481_261972_+	glycosyltransferase	NA	NA	NA	NA
WP_002461611.1\|262124_263069_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.0e-126	71.1
WP_002461610.1\|263263_263662_-	glycerol-3-phosphate cytidylyltransferase	A0A222YWT0	Streptomyces_phage	1.9e-16	39.3
WP_002461607.1\|263762_265934_-	bifunctional glycosyltransferase family 2 protein/CDP-glycerol:glycerophosphate glycerophosphotransferase	NA	NA	NA	NA
WP_002461606.1\|266216_267389_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_002461605.1\|267438_268278_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA
WP_002461604.1\|268567_268876_+	hypothetical protein	NA	NA	NA	NA
WP_002461603.1\|268924_269791_-	hypothetical protein	NA	NA	NA	NA
WP_002461602.1\|269993_270611_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_002461600.1\|270671_271943_-	amidohydrolase family protein	NA	NA	NA	NA
WP_002461598.1\|272212_272887_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA
WP_002461596.1\|273094_274855_+	sensor histidine kinase	B6DZC2	Enterobacteria_phage	2.6e-54	30.1
WP_002461595.1\|274851_275592_+	DNA-binding response regulator	NA	NA	NA	NA
WP_050801493.1\|275714_276158_+\|holin	antiholin-like murein hydrolase modulator LrgA	NA	NA	NA	NA
WP_002461593.1\|276150_276852_+\|holin	antiholin-like protein LrgB	NA	NA	NA	NA

DBSCAN-SWA_2

409628 : 424927

Staphylococcus_phage(56.25%)

terminase,integrase

attL 399473:399517|attR 437064:437108

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
399473:399517	attL	NA	NA	NA	NA
WP_002462005.1\|409628_411095_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	3.0e-96	41.2
WP_002462003.1\|411120_412662_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.8e-23	32.6
WP_002462002.1\|412755_413892_-\|integrase	site-specific integrase	Q938N9	Temperate_phage	1.2e-68	43.7
WP_002462001.1\|413976_414594_-	helix-turn-helix transcriptional regulator	A0A0A8WFG2	Clostridium_phage	3.7e-11	40.6
WP_002461999.1\|414736_414958_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002461998.1\|414935_415196_+	hypothetical protein	NA	NA	NA	NA
WP_002461996.1\|415328_415484_+	hypothetical protein	NA	NA	NA	NA
WP_002461994.1\|415485_415701_+	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	1.1e-12	57.4
WP_002461993.1\|415690_415987_+	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.7e-14	42.0
WP_002461992.1\|416082_418338_+	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	0.0e+00	75.7
WP_103262348.1\|418637_418985_+	hypothetical protein	Q4ZE71	Staphylococcus_phage	5.4e-12	35.0
WP_002461990.1\|418985_419627_+	hypothetical protein	Q4ZE67	Staphylococcus_phage	1.2e-92	77.5
WP_040800965.1\|420073_420427_+	hypothetical protein	Q4ZE66	Staphylococcus_phage	5.7e-41	73.0
WP_002461987.1\|420450_421179_+	hypothetical protein	Q4ZE82	Staphylococcus_phage	3.9e-28	31.7
WP_002461986.1\|421239_421704_+	hypothetical protein	A0A1W6JQH7	Staphylococcus_phage	9.7e-33	58.7
WP_002461984.1\|421707_422049_+	hypothetical protein	Q4ZE86	Staphylococcus_phage	3.1e-12	35.2
WP_095092566.1\|422053_422620_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	3.2e-54	56.2
WP_002464992.1\|422862_423372_+	DUF4065 domain-containing protein	D7RWK7	Brochothrix_phage	8.5e-22	40.5
WP_002464993.1\|423364_423973_+	hypothetical protein	NA	NA	NA	NA
WP_002464994.1\|424103_424562_+	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_103262347.1\|424609_424927_+	DUF3102 domain-containing protein	A0A2H4JAH5	uncultured_Caudovirales_phage	3.4e-21	57.0
437064:437108	attR	NA	NA	NA	NA

DBSCAN-SWA_3

722799 : 729348

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002462146.1\|722799_723486_-	response regulator transcription factor	W8CYM9	Bacillus_phage	9.6e-37	37.8
WP_002462145.1\|723460_723934_-	DoxX family protein	NA	NA	NA	NA
WP_002462144.1\|724043_724475_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_002462143.1\|724684_725266_-	hypothetical protein	NA	NA	NA	NA
WP_002462142.1\|725471_726185_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	7.9e-50	42.7
WP_002462141.1\|726177_726609_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	1.5e-06	28.6
WP_002462140.1\|726611_727283_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	3.4e-63	54.7
WP_002462139.1\|727619_728213_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.1e-32	37.7
WP_002462137.1\|728196_729348_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	5.2e-19	37.2

DBSCAN-SWA_4

747616 : 756702

uncultured_Caudovirales_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002463918.1\|747616_748117_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	8.5e-51	70.8
WP_002463917.1\|748155_749013_-	DMT family transporter	NA	NA	NA	NA
WP_002463916.1\|749822_750221_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	6.6e-54	75.0
WP_002463915.1\|750183_752289_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_002463914.1\|752391_753360_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	9.4e-171	91.9
WP_002463844.1\|754029_755001_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.1e-142	81.7
WP_002463843.1\|754987_755944_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	54.0
WP_002463842.1\|755943_756702_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.5e-17	29.1

DBSCAN-SWA_5

951524 : 1002283

Staphylococcus_phage(45.61%)

protease,terminase,holin,transposase,capsid,tail,portal,integrase,head,plate

attL 955949:955967|attR 999640:999658

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002461907.1\|951524_952127_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002461909.1\|952141_952318_-	DUF2187 family protein	NA	NA	NA	NA
WP_095092635.1\|952400_953348_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.8e-134	72.4
WP_002461530.1\|953591_954578_+	lipoate--protein ligase	NA	NA	NA	NA
WP_002461531.1\|954658_954877_-	IDEAL domain-containing protein	NA	NA	NA	NA
WP_002461533.1\|955084_955654_+	competence protein ComK	NA	NA	NA	NA
955949:955967	attL	NA	NA	NA	NA
WP_095092637.1\|956119_957184_-\|integrase	tyrosine-type recombinase/integrase	B7T092	Staphylococcus_virus	5.5e-180	87.3
WP_002464319.1\|957276_957756_-	hypothetical protein	NA	NA	NA	NA
WP_002464320.1\|957804_958431_-	helix-turn-helix domain-containing protein	A0A2H4J3T7	uncultured_Caudovirales_phage	2.0e-97	86.5
WP_002464321.1\|958627_958843_+	helix-turn-helix transcriptional regulator	A0A2H4JBV7	uncultured_Caudovirales_phage	8.2e-27	87.3
WP_095092639.1\|958858_959548_+	phage repressor protein	A9CR56	Staphylococcus_phage	2.7e-79	66.5
WP_002462593.1\|960033_960267_+	hypothetical protein	NA	NA	NA	NA
WP_002462594.1\|960283_960448_-	hypothetical protein	NA	NA	NA	NA
WP_002462595.1\|960506_960722_+	DUF771 domain-containing protein	B7T098	Staphylococcus_virus	4.6e-30	88.4
WP_002462596.1\|960736_960889_+	hypothetical protein	NA	NA	NA	NA
WP_040801540.1\|960881_961073_+	DUF1270 family protein	A0A059T7J6	Staphylococcus_phage	1.2e-08	62.3
WP_002462598.1\|961133_962816_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_002462599.1\|962816_963077_+	DUF1108 family protein	A0A2I6PDH1	Staphylococcus_phage	3.6e-29	68.6
WP_040801552.1\|963082_963334_+	hypothetical protein	A0A0H3U2S3	Staphylococcus_phage	3.0e-20	63.9
WP_002462601.1\|963326_963863_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	4.4e-85	93.2
WP_002462602.1\|963863_964499_+	ERF family protein	A0A059T7J7	Staphylococcus_phage	2.0e-76	66.5
WP_002462603.1\|964498_964942_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	3.9e-55	71.2
WP_002462604.1\|964954_965506_+	HNH endonuclease	A0A1W6JPN8	Staphylococcus_phage	6.3e-79	75.0
WP_002462605.1\|965506_966178_+	hypothetical protein	A0A2H4J4Z9	uncultured_Caudovirales_phage	3.9e-107	83.7
WP_002462606.1\|966174_966930_+	DnaD domain protein	B7T0A7	Staphylococcus_virus	2.1e-101	74.9
WP_002462607.1\|966929_967283_+	hypothetical protein	B7T0A8	Staphylococcus_virus	7.6e-54	86.3
WP_002462608.1\|967282_968524_+	AAA family ATPase	A0A0E3T8L1	Staphylococcus_phage	3.4e-205	87.7
WP_002462609.1\|968520_968757_+	hypothetical protein	Q4ZA49	Staphylococcus_virus	5.7e-21	70.3
WP_002462610.1\|968719_968944_+	DUF3269 family protein	A7TWN4	Staphylococcus_phage	1.0e-24	75.7
WP_002462611.1\|968952_969357_+	DUF1064 domain-containing protein	A0A2H4J2N3	uncultured_Caudovirales_phage	1.5e-61	86.5
WP_002462612.1\|969361_969547_+	DUF3113 family protein	R4IFK8	Staphylococcus_phage	1.2e-13	55.7
WP_002462613.1\|969539_969842_+	hypothetical protein	NA	NA	NA	NA
WP_002462614.1\|969868_970384_+	hypothetical protein	C8CGZ9	Staphylococcus_phage	2.1e-12	53.9
WP_002462615.1\|970388_970628_+	hypothetical protein	NA	NA	NA	NA
WP_002462616.1\|970605_970788_+	hypothetical protein	A0A1W6JPR6	Staphylococcus_phage	1.3e-17	68.3
WP_002462617.1\|970798_971020_+	DUF3310 domain-containing protein	A0A2H4J2X1	uncultured_Caudovirales_phage	1.3e-27	78.3
WP_002462619.1\|971205_971520_+	DUF1140 family protein	A0A2H4J2Y8	uncultured_Caudovirales_phage	5.0e-33	67.0
WP_002462620.1\|971513_971915_+	hypothetical protein	A0A060AF22	Staphylococcus_phage	3.3e-21	46.8
WP_162096499.1\|971968_972163_+	hypothetical protein	NA	NA	NA	NA
WP_136527609.1\|972159_972426_+	hypothetical protein	NA	NA	NA	NA
WP_002462625.1\|972661_973198_+	dUTP pyrophosphatase	A0A1J0MG68	Staphylococcus_phage	1.1e-72	80.2
WP_002462626.1\|973234_973387_+	DUF1381 domain-containing protein	Q4ZCG4	Staphylococcus_virus	8.7e-07	55.6
WP_002462627.1\|973379_973562_+	hypothetical protein	NA	NA	NA	NA
WP_002462628.1\|973564_973762_+	DUF1514 family protein	A0A0D4DCK3	Staphylococcus_phage	1.7e-07	46.2
WP_002462629.1\|973774_974209_+	transcriptional regulator	A7TWI7	Staphylococcus_phage	2.4e-65	86.7
WP_002462630.1\|974746_975100_+	HNH endonuclease	H9A108	Staphylococcus_phage	6.7e-50	79.6
WP_002462631.1\|975244_975718_+\|terminase	phage terminase small subunit P27 family	A0A1D6Z2B0	Staphylococcus_phage	5.2e-58	68.3
WP_002462632.1\|975710_977462_+\|terminase	terminase large subunit	A0A0N9SI77	Staphylococcus_phage	6.4e-312	88.7
WP_002462633.1\|977474_977663_+	hypothetical protein	A0A2H4J9T6	uncultured_Caudovirales_phage	9.4e-11	60.9
WP_002462634.1\|977665_978898_+\|portal	phage portal protein	A0A2H4JA65	uncultured_Caudovirales_phage	1.1e-208	87.8
WP_002462635.1\|978887_979445_+\|head,protease	HK97 family phage prohead protease	H9A114	Staphylococcus_phage	6.7e-89	84.9
WP_002462636.1\|979487_980819_+\|capsid	phage major capsid protein	A0A2H4J4F8	uncultured_Caudovirales_phage	1.1e-158	80.5
WP_002462637.1\|980833_981172_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JDD1	uncultured_Caudovirales_phage	9.2e-41	76.8
WP_002462638.1\|981161_981491_+\|head,tail	head-tail adaptor protein	A0A2H4JGE5	uncultured_Caudovirales_phage	6.9e-49	82.6
WP_002462639.1\|981487_981898_+	hypothetical protein	A0A2H4J3L8	uncultured_Caudovirales_phage	1.3e-41	61.8
WP_002462640.1\|981898_982303_+	hypothetical protein	A0A2H4JA89	uncultured_Caudovirales_phage	1.4e-64	88.8
WP_002462641.1\|982315_982939_+\|tail	phage tail protein	A0A2H4JH93	uncultured_Caudovirales_phage	3.1e-98	86.5
WP_002462642.1\|982953_983139_+	hypothetical protein	A0A0N9STM6	Staphylococcus_phage	1.8e-22	83.6
WP_002462643.1\|983201_983564_+	hypothetical protein	A0A2H4JDN2	uncultured_Caudovirales_phage	1.5e-52	87.5
WP_002462645.1\|983777_988181_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JDT7	uncultured_Caudovirales_phage	0.0e+00	66.5
WP_002462646.1\|988182_989010_+\|tail	phage tail family protein	A0A2H4JFA2	uncultured_Caudovirales_phage	8.1e-123	73.1
WP_002462647.1\|989018_990617_+\|tail	phage tail protein	A0A2H4J5K5	uncultured_Caudovirales_phage	3.5e-223	69.3
WP_002462648.1\|990609_991050_+	hypothetical protein	A0A2H4JCK2	uncultured_Caudovirales_phage	1.3e-05	75.9
WP_002462649.1\|991062_993669_+	hypothetical protein	A0A2H4JF10	uncultured_Caudovirales_phage	7.6e-308	62.7
WP_002462650.1\|993682_995170_+\|plate	BppU family phage baseplate upper protein	A0A2H4JH16	uncultured_Caudovirales_phage	1.7e-91	63.6
WP_002462652.1\|995595_995745_+	XkdX family protein	A0A060AB44	Staphylococcus_phage	5.3e-09	56.5
WP_002462653.1\|995781_996225_+	hypothetical protein	A0A2H4JB99	uncultured_Caudovirales_phage	4.8e-37	48.3
WP_002462654.1\|996197_996611_+	hypothetical protein	A0A2H4J2M0	uncultured_Caudovirales_phage	9.2e-43	63.5
WP_002462655.1\|996660_996921_+\|holin	phage holin	A0A0F6N3M0	Staphylococcus_phage	1.8e-36	84.9
WP_002462656.1\|996923_998330_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCA1	uncultured_Caudovirales_phage	2.2e-245	86.5
WP_157738308.1\|998463_999243_+	glycerophosphodiester phosphodiesterase	A0A076G4Q2	Staphylococcus_phage	4.9e-29	36.3
WP_002462658.1\|999347_999560_+	hypothetical protein	NA	NA	NA	NA
WP_050801503.1\|1000843_1001767_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
999640:999658	attR	NA	NA	NA	NA
WP_002462662.1\|1002055_1002283_-	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	9.0e-08	43.9

DBSCAN-SWA_6

1210590 : 1286740

Staphylococcus_phage(32.0%)

protease,terminase,holin,transposase,capsid,portal,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002464267.1\|1210590_1211877_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_002464266.1\|1211899_1213603_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_002464265.1\|1213918_1218235_+	PolC-type DNA polymerase III	A0A0A8WJ41	Clostridium_phage	4.5e-23	41.2
WP_002464264.1\|1218431_1218899_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_002464263.1\|1218919_1220119_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_095092673.1\|1220137_1220422_+	YlxR family protein	NA	NA	NA	NA
WP_002464261.1\|1220418_1220736_+	ribosomal L7Ae/L30e/S12e/Gadd45 family protein	NA	NA	NA	NA
WP_002464260.1\|1220740_1222858_+	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	1.5e-24	24.7
WP_002464258.1\|1223698_1224052_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_002464257.1\|1224378_1225296_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_002464256.1\|1225310_1226282_+	riboflavin biosynthesis protein RibF	A0A1V0SD03	Indivirus	4.7e-05	28.6
WP_002464255.1\|1226395_1226665_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_002464254.1\|1226941_1229041_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_002464253.1\|1229752_1231426_+	ribonuclease J	NA	NA	NA	NA
WP_002464252.1\|1231644_1234029_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	9.6e-84	47.7
WP_002464251.1\|1234031_1234745_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_088177487.1\|1234857_1236045_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	7.0e-43	29.6
WP_002464249.1\|1236041_1237328_+	insulinase family protein	G3MBJ8	Bacillus_virus	4.2e-17	22.9
WP_002464248.1\|1237327_1238032_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002464247.1\|1238124_1238952_+	YmfK family protein	NA	NA	NA	NA
WP_002464246.1\|1238974_1239367_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002464245.1\|1239400_1239976_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_002464244.1\|1240655_1241798_+	CinA family nicotinamide mononucleotide deamidase-related protein	NA	NA	NA	NA
WP_002464243.1\|1241971_1243021_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	7.1e-124	65.3
WP_002464242.1\|1243484_1245044_+	ribonuclease Y	NA	NA	NA	NA
WP_095092675.1\|1245224_1246541_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	4.1e-44	30.5
WP_002463863.1\|1247326_1247542_-	hypothetical protein	NA	NA	NA	NA
WP_002463864.1\|1247706_1248498_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
WP_002463865.1\|1248751_1250512_+	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
WP_002463866.1\|1250512_1251379_+	2-oxoacid:ferredoxin oxidoreductase subunit beta	NA	NA	NA	NA
WP_002463867.1\|1251742_1252033_+	thiamine-binding protein	NA	NA	NA	NA
WP_002463868.1\|1252434_1253979_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
WP_002463869.1\|1253980_1254334_+	YlbF family regulator	NA	NA	NA	NA
WP_002463870.1\|1254370_1254868_+	energy coupling factor transporter S component ThiW	NA	NA	NA	NA
WP_002463871.1\|1255183_1257802_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.9e-40	25.9
WP_002463872.1\|1257814_1259755_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.3e-62	30.7
WP_002463873.1\|1259768_1260302_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_002463874.1\|1260987_1261806_+	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	2.5e-31	35.7
WP_002463875.1\|1261941_1263438_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_002463876.1\|1263600_1265274_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_002463887.1\|1266030_1266939_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_088177474.1\|1266963_1267899_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_002463889.1\|1267914_1268154_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_002463890.1\|1268507_1268984_-	glutathione peroxidase	Q70H87	Fowlpox_virus	1.2e-22	38.0
WP_002463891.1\|1269094_1270333_+	GTPase HflX	NA	NA	NA	NA
WP_002463892.1\|1270351_1271590_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_162096503.1\|1271831_1272200_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002463894.1\|1272218_1273559_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_002463896.1\|1274120_1274309_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	3.0e-17	69.4
WP_002463898.1\|1274728_1274929_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	6.7e-15	58.5
WP_002463899.1\|1275201_1275387_+	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.3e-17	73.7
WP_002463900.1\|1275422_1275818_+	type II toxin-antitoxin system HicB family antitoxin	A0A1P8VVW2	Streptococcus_phage	9.2e-24	44.0
WP_002463901.1\|1275983_1276412_+\|terminase	terminase small subunit	H9A0M8	Staphylococcus_phage	1.7e-39	68.8
WP_002463902.1\|1276398_1277673_+\|terminase	PBSX family phage terminase large subunit	Q4ZE37	Staphylococcus_virus	1.7e-191	74.1
WP_002463903.1\|1277687_1279130_+\|portal	phage portal protein	Q4ZE36	Staphylococcus_virus	2.9e-184	67.9
WP_002463904.1\|1279122_1280511_+\|capsid	minor capsid protein	A0A1J0MFV1	Staphylococcus_phage	1.9e-116	59.1
WP_002463905.1\|1280530_1280770_+	hypothetical protein	NA	NA	NA	NA
WP_002463906.1\|1280931_1281525_+	DUF4355 domain-containing protein	A0A1J0MFB3	Staphylococcus_phage	3.1e-15	45.6
WP_002463907.1\|1281545_1281965_+\|holin	phage holin family protein	H9A0N3	Staphylococcus_phage	4.7e-10	62.7
WP_002463911.1\|1283300_1283498_+	hypothetical protein	A0A0K1LL29	Staphylococcus_phage	7.0e-17	72.1
WP_088177476.1\|1284603_1284912_+	hypothetical protein	D7RWK9	Brochothrix_phage	5.9e-10	35.6
WP_136527613.1\|1285343_1285484_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_002465207.1\|1286386_1286740_+	hypothetical protein	A0A1J0MF61	Staphylococcus_phage	3.7e-24	49.6

DBSCAN-SWA_7

1633838 : 1643251

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002462056.1\|1633838_1634357_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.3e-29	46.5
WP_002462055.1\|1634379_1636653_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.0e-66	29.2
WP_002462956.1\|1637229_1639509_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.1e-31	36.0
WP_002462958.1\|1639780_1640041_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.7e-06	42.6
WP_002462960.1\|1640058_1641198_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	3.2e-85	44.7
WP_002462962.1\|1641219_1642245_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002462964.1\|1642246_1643251_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	2.2e-05	29.1

DBSCAN-SWA_8

1770226 : 1808424

Staphylococcus_phage(92.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002464297.1\|1770226_1776499_-	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.4e-57	31.1
WP_002464296.1\|1776793_1777105_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	2.2e-41	79.6
WP_002464295.1\|1777120_1779535_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	92.1
WP_002464294.1\|1779818_1781006_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	1.1e-192	85.5
WP_002464293.1\|1781114_1782068_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.4e-72	89.5
WP_002464292.1\|1782064_1782625_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	6.2e-74	72.0
WP_002464291.1\|1782681_1783083_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002464290.1\|1783513_1784344_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002464289.1\|1784578_1785577_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	5.0e-159	85.6
WP_002464288.1\|1785706_1786165_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.3e-63	91.4
WP_002464287.1\|1786177_1787383_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.4e-187	81.5
WP_002464286.1\|1787393_1788026_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.7e-92	79.0
WP_002464285.1\|1788033_1789077_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.0e-156	77.3
WP_002464284.1\|1789454_1790975_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	2.5e-21	78.6
WP_002464283.1\|1791331_1792189_-	glucosaminidase domain-containing protein	Q4ZCC7	Staphylococcus_virus	4.4e-39	38.1
WP_002464282.1\|1792419_1792650_-	hypothetical protein	NA	NA	NA	NA
WP_002464280.1\|1793337_1793775_+	competence protein ComK	NA	NA	NA	NA
WP_002464279.1\|1793767_1794211_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	4.2e-33	57.1
WP_002464278.1\|1794453_1795167_-	transaldolase	M1PR54	Cyanophage	2.1e-18	34.8
WP_002464277.1\|1795719_1796022_+	hypothetical protein	NA	NA	NA	NA
WP_002464276.1\|1796201_1796570_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.2e-39	68.6
WP_002464275.1\|1796563_1796917_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	6.7e-10	37.6
WP_002464274.1\|1797074_1797908_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.6e-118	73.3
WP_002464273.1\|1798028_1798937_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	1.0e-118	91.4
WP_002464272.1\|1799055_1800252_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.7e-203	93.2
WP_002464271.1\|1800621_1802214_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.0e-295	93.4
WP_162096506.1\|1802696_1803455_-	prolyl oligopeptidase family serine peptidase	A0A2H4PQM6	Staphylococcus_phage	2.5e-110	78.0
WP_040802166.1\|1803459_1803933_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.5e-52	66.0
WP_002464484.1\|1803998_1804250_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	5.8e-40	91.8
WP_040802164.1\|1804246_1805245_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	5.1e-111	59.5
WP_002464482.1\|1805234_1806656_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.0e-174	64.0
WP_136527616.1\|1806830_1807331_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	9.5e-26	44.2
WP_002464480.1\|1807710_1808424_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	4.5e-13	33.9

DBSCAN-SWA_9

1814018 : 1824726

Staphylococcus_phage(53.85%)

integrase

attL 1809328:1809343|attR 1832184:1832199

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1809328:1809343	attL	NA	NA	NA	NA
WP_002464470.1\|1814018_1814783_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	7.4e-54	44.0
WP_002464466.1\|1816797_1817232_+	DUF4145 domain-containing protein	A0A1X9I5M7	Streptococcus_phage	8.3e-26	43.2
WP_002464465.1\|1817228_1817390_-	hypothetical protein	NA	NA	NA	NA
WP_002464464.1\|1818190_1818412_-	DUF2483 family protein	A0A1W6JQ25	Staphylococcus_phage	2.0e-20	67.1
WP_103262359.1\|1818383_1818668_-	hypothetical protein	A0A0H3U2S3	Staphylococcus_phage	4.4e-20	63.9
WP_002464459.1\|1819342_1819558_-	DUF771 domain-containing protein	B7T098	Staphylococcus_virus	3.0e-29	84.5
WP_002464458.1\|1819617_1819827_+	hypothetical protein	W5R9J5	Staphylococcus_phage	4.8e-24	84.1
WP_002464457.1\|1819816_1819960_-	hypothetical protein	W5R8I6	Staphylococcus_phage	1.2e-10	78.7
WP_002464456.1\|1820052_1820523_+	hypothetical protein	NA	NA	NA	NA
WP_095092763.1\|1820734_1821421_-	phage repressor protein	A9CR56	Staphylococcus_phage	2.9e-102	82.1
WP_002463692.1\|1821443_1821668_-	helix-turn-helix transcriptional regulator	A0A059T617	Staphylococcus_phage	5.4e-29	94.1
WP_002463690.1\|1821831_1822158_+	helix-turn-helix transcriptional regulator	Q4ZC39	Staphylococcus_virus	4.4e-40	79.4
WP_002463686.1\|1822645_1823485_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A2H4PQQ5	Staphylococcus_phage	4.2e-26	34.5
WP_002463683.1\|1823672_1824128_+\|integrase	phage integrase SAM-like domain-containing protein	B7T092	Staphylococcus_virus	1.0e-58	83.8
WP_095092765.1\|1824165_1824726_+\|integrase	site-specific integrase	B7T092	Staphylococcus_virus	2.8e-90	88.6
1832184:1832199	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_LT906460.1|WP_002463889.1|1267914_1268154_+|RNA-chaperone-Hfq

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_LT906460.1|WP_002463889.1|1267914_1268154_+|RNA-chaperone-Hfq

1267914_1268154_+

79 aa aa

1210590-1286740

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_LT906460_7	Orphan	7.1\|1689684\|46\|NZ_LT906460\|CRISPRCasFinder	1689684-1689729	46	1265603-1265648	2

1. spacer 7.1|1689684|46|NZ_LT906460|CRISPRCasFinder matches to NZ_LT906460 position: 1265603-1265648, mismatch: 2

agaaaaattttaaaaataaaattttttcttttatgtgcaagacggg	CRISPR spacer
agaaaaattttataactaaaattttttcttttatgtgcaagacggg	Protospacer
************ ** ******************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906460

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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