CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906483	Mycolicibacterium thermoresistibile strain NCTC10409 chromosome 1	2 crisprs	WYL,cas3,csa3,DEDDh,cas4,DinG	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906483_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906483_1

1692785-1692904

Orphan

Consensus_repeat	Method
CCCGGCGGCGGGCCGCCCCATTGACCCGGCGGCGGGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906483_1

>merge|NZ_LT906483|1|1692785-1692904|CRISPRCasFinder
CCCGGCGGCGGGCCGCCCCATTGACCCGGCGGCGGGCCGTAGGGACCGGGCGGGGGAGCACCGTGCGGGCCGCCCCATTGACCCGGCGGCGGGCCGCCCCATTGACCCGGCGGCGGGCCG

>NZ_LT906483|1|1|1692785-1692904|CRISPRCasFinder
CCCGGCGGCGGGCCGCCCCATTGACCCGGCGGCGGGCCG	TAGGGACCGGGCGGGGGAGCACCGTGCGGGCCGCCCCATTGA
CCCGGCGGCGGGCCGCCCCATTGACCCGGCGGCGGGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906483.1\|WP_003927780.1\|1691424_1692285_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_LT906483.1\|WP_003927784.1\|1693847_1697435_+\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_LT906483.1\|WP_040548454.1\|1688055_1688625_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_LT906483.1\|WP_003887539.1\|1708460_1709822_+\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|226950
NZ_LT906483.1\|WP_003927774.1\|1684675_1688059_+\|pyruvate-carboxylase	unknown	unknown	gnl\|CDD\|237263
NZ_LT906483.1\|WP_003927772.1\|1683205_1684006_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372611
NZ_LT906483.1\|WP_081475603.1\|1698707_1699622_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_003927777.1\|1689314_1690052_+\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226127
NZ_LT906483.1\|WP_003927783.1\|1693521_1693821_+\|acylphosphatase	unknown	unknown	gnl\|CDD\|237712
NZ_LT906483.1\|WP_050812100.1\|1690119_1690743_+\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|224317
NZ_LT906483.1\|WP_003927779.1\|1690739_1691432_+\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_LT906483.1\|WP_165483632.1\|1682016_1683162_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
NZ_LT906483.1\|WP_003924852.1\|1705263_1708149_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|368155
NZ_LT906483.1\|WP_003927773.1\|1684002_1684638_+\|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl\|CDD\|240605
NZ_LT906483.1\|WP_003927782.1\|1693118_1693535_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
NZ_LT906483.1\|WP_050811926.1\|1701947_1705253_+\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|225100
NZ_LT906483.1\|WP_162292341.1\|1699852_1701220_+\|ISL3-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_LT906483.1\|WP_110844496.1\|1697650_1698445_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_LT906483.1\|WP_003927776.1\|1688649_1689132_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_LT906483.1\|WP_040546470.1\|1701593_1701818_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935

Protein	Function_ID	Function_description	E-value
NZ_LT906483.1\|WP_003927780.1\|1691424_1692285_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	3.0205e-144
NZ_LT906483.1\|WP_003927784.1\|1693847_1697435_+\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_LT906483.1\|WP_040548454.1\|1688055_1688625_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	3.07029e-63
NZ_LT906483.1\|WP_003887539.1\|1708460_1709822_+\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.89001e-09
NZ_LT906483.1\|WP_003927774.1\|1684675_1688059_+\|pyruvate-carboxylase	gnl\|CDD\|237263	PRK12999, PRK12999, pyruvate carboxylase; Reviewed.	0
NZ_LT906483.1\|WP_003927772.1\|1683205_1684006_+\|DsbA-family-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	6.84122e-15
NZ_LT906483.1\|WP_003927777.1\|1689314_1690052_+\|DivIVA-domain-containing-protein	gnl\|CDD\|226127	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning].	1.15145e-34
NZ_LT906483.1\|WP_003927783.1\|1693521_1693821_+\|acylphosphatase	gnl\|CDD\|237712	PRK14422, PRK14422, acylphosphatase; Provisional.	2.02691e-52
NZ_LT906483.1\|WP_050812100.1\|1690119_1690743_+\|DUF177-domain-containing-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	8.98899e-38
NZ_LT906483.1\|WP_003927779.1\|1690739_1691432_+\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	7.06077e-118
NZ_LT906483.1\|WP_165483632.1\|1682016_1683162_+\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.0735e-97
NZ_LT906483.1\|WP_003924852.1\|1705263_1708149_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|368155	pfam04851, ResIII, Type III restriction enzyme, res subunit.	8.52285e-09
NZ_LT906483.1\|WP_003927773.1\|1684002_1684638_+\|vitamin-K-epoxide-reductase-family-protein	gnl\|CDD\|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	1.81735e-60
NZ_LT906483.1\|WP_003927782.1\|1693118_1693535_+\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	5.1612e-21
NZ_LT906483.1\|WP_050811926.1\|1701947_1705253_+\|site-specific-DNA-methyltransferase	gnl\|CDD\|225100	COG2189, COG2189, Adenine specific DNA methylase Mod [DNA replication, recombination, and repair].	1.26239e-19
NZ_LT906483.1\|WP_162292341.1\|1699852_1701220_+\|ISL3-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	1.39671e-56
NZ_LT906483.1\|WP_110844496.1\|1697650_1698445_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.0059613
NZ_LT906483.1\|WP_003927776.1\|1688649_1689132_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.90503e-94
NZ_LT906483.1\|WP_040546470.1\|1701593_1701818_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.3874e-18

>NZ_LT906483.1|WP_003927780.1|1691424_1692285_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVVRRGLHEHVTGRAVAAVRVHHPRAVRRHEAGPADLTARLVDARITGTGRRGKYLWLTLDDGAEALVVHLGMSGQMLLGPVPNENHLRIAALLDDGTTLSFVDQRTFGGWMIADMVTVEGSEVPAPVVHLARDPLDPLFDRDAVVTVLRGKHSEIKRQLLDQTVVSGIGNIYADEALWRARINGARTASALTRRRLGELLDAAADVMREALRQGGTSFDSLYVNVNGESGYFERSLDAYGRAGEPCRRCGAVLRREKFMNRSSFYCPKCQPRPRIRRC
>NZ_LT906483.1|WP_003927779.1|1690739_1691432_+|ribonuclease-III
MSADRSALLEALGVDLPDELLTIALTHRSYSYEHGGLPTNERLEFLGDAVLGLTITEELYHRHPDRSEGDLAKLRASIVNTQALADVGRRLSESGLGAYILLGKGEESSGGADKSSILADGVESLLGAIYIHHGLETSRAVILRLFGELLDTAPTLGAGLDWKSSLQELTAARGMGAPSYVVTSTGPDHDKEFTATVVIAEQEYGTGTGRTKKEAELKAAAAAWHALDGA
>NZ_LT906483.1|WP_050812100.1|1690119_1690743_+|DUF177-domain-containing-protein
MATHASAAAHRADRSPLVINISRLGRQPGSMLTFDETVASPSRLGVALVGVEQGAPLEFHLRIEAVSEGVLVSGTMSAPTTGECARCLDPVHGRVDIELTELFAYPDSITAETTDADDLGRVDTTGDVDTVDLEQPIIDAVGLVLPFSPLCGPDCLGLCPQCGIRLATAEPGHRHEVIDPRWAKLAAMFPDREAVSDRDGDGPGESG
>NZ_LT906483.1|WP_003927777.1|1689314_1690052_+|DivIVA-domain-containing-protein
MYRVFEALDELGAIVEEARGVPMTAGCVVPRGDVLELIDDIKDAIPGELDDAQDVLDARDTLLREAKEHSESMVSTATAEAESLVSHARAEADRLLAEAKAQADRMVAEARQHSERMVTEAREEASRIVATAKREYEATTGRAKSEADRLIESGNLAYEKAVQEGIKEQQRLVSQTEIVQTANAEASRLIDSAHAEADRLRGECDIYVDSKLAEFEEFLNGTLRSVNRGRHQLRTAAGTHDYVTR
>NZ_LT906483.1|WP_003927776.1|1688649_1689132_+|pantetheine-phosphate-adenylyltransferase
MSGAVCPGSFDPVTLGHVDVFERAAAQFDEVIVAVLVNPNKQGMFSLEERIEMIEESTTHLPNLRVESGSGLVVDFVKSRGMTAIVKGLRTGTDFEYELQMAQMNKHIAGVDTFFVATTPRYSFVSSSLAKEVAMLGGDVSELLPGPVNARLRKKLAERG
>NZ_LT906483.1|WP_040548454.1|1688055_1688625_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MTRIIAGAFRGRRITAPRSGSRPTTDRVREALFNLLTARMELAGATVLDLYAGSGALGLEAMSRGAASVVFVESDHRAAAIIAKNIATLGVRDAEVRRTSVASVLTAGADGPVDLVLADPPYRVTNDEMHALLATLVDRGWTAPGTVVAVERGTGHDPLRWPAGWTVWPPRRYGDTRLELARAEPDRPR
>NZ_LT906483.1|WP_003927774.1|1684675_1688059_+|pyruvate-carboxylase
MISKVLVANRGEIAIRAFRAAYELGIATVAVYPYEDRNSLHRLKADESYQIGEIGHPVRAYLSVDEIIRVARHAGADAVYPGYGFLSENPRLAAACEQAGITFIGPSAEILALTGNKSRAVAAARAAGIPVLASSAPSSSPEELMAAADEIGFPLFVKAVSGGGGRGMRRVADRAGLAEAIEAAGREAESAFGDPSLYLEQAVVNPRHIEVQILADTAGNVMHLYERDCSVQRRHQKVIELAPAPNLPDELRERICADAVAFAREVGYAYAGTVEFLVDEQGRHVFIEMNPRIQVEHTVTEEITDVDLVGAQLRIADGQTLADLGLSQETLRTRGTALQCRITTEDPANGFRPDVGRVTGYRSPGGAGIRLDGGTHVGAEISPHFDSMLVKLTCRGRDFATAVARARRALAEFRVRGVSTNIPFLQAVIADPDFRAGRINTSFIDERPHLLTARIPADRGTKILNYLADVTVNKPHGERPSAVYAQDKLPSVDLQAPPPAGSKQRLEELGPDGFAAWLRDEPAVGVTDTTFRDAHQSLLATRVRTNGLVMVAPYVARMMPQLLSIECWGGATYDVALRFLKEDPWDRLAAIREAVPNICLQMLLRGRNTVGYTPYPDTVTKAFVAEATAVGIDIYRIFDALNNVDSMRPAIDAVRETGTAVAEVAMCYTGDLSDPGERLYTLDYYLRLAEQIVAAGAHVLAIKDMAGLLRPPAAATLVGALRSRFDLPVHVHTHDTPGGQLATYLAAWQAGASAVDGAAAPLAGTTSQPALSAIVAATAHTEHDTGLDLSAVCDLEPYWEALRKMYAPFESGLPAPTGRVYTHEIPGGQLSNLRQQAIALGLGDRFEDIEAAYAGADRVLGRLVKVTPSSKVVGDLALALVGAGVSAEEFAADPSRVDIPDSVIGFLRGELGDPPGGWPEPLRSTALAGRRPARPTVELSAEDQAVLAQPGPKRQAALNRLLFPGPTAEFEAHRETYGDTTSLSANQFFYGLRHGEEHRVRLERGVELIIGLEAISDPDERGMRTVMCIINGQLRPVQVRDKSIASQIPAAEKADRANPDHIAAPFAGVVTLNISTGDRVEAGQTIATIEAMKMEAAITAPKAGTISRIAVSETAQVEGGDLLAVLN
>NZ_LT906483.1|WP_003927773.1|1684002_1684638_+|vitamin-K-epoxide-reductase-family-protein
MTVDTPSAAPAADSPVGAPSGLPVGRPTALWVLIAGVLGLAAAIALTIEKVALLIDPDYVPTCSLNPVLSCGSVMVTPQASVFGFPNSLIGVVSFTVVTVTGVLALAGIRLPRWYWGGLATGTLFGTVFVHWLIFQSLYRIEALCPYCMVVWAVTIPLLVVTASVALQPAGHTSPVARALYQWRWSLTALWFTALFLLILVQFWSYWSTLV
>NZ_LT906483.1|WP_003927772.1|1683205_1684006_+|DsbA-family-protein
MATKKKNARKPNKNARYDLKAADRRRNLFIQIGLTAVVVVFAVALVLYIVMTSDRPGSGDGQAVRVTSENVITDEESGEPKVVLSLYEDPLCPGCAGFERVFGPTISRIIDSGAAVVDYHMVAILDSTQSDNYSSRAGAAAYCVADESVDAFRRFHSALFVMQPREVGGVYPDNRQLIETARQAGAVGEVPNCINNGRYVDMVKGMAAAGGIHSTPTVRINGEDFDFTKSTPDDLVAAVKEIVGDVPGLEAAPPAQPQLDGPVPAP
>NZ_LT906483.1|WP_165483632.1|1682016_1683162_+|alpha/beta-hydrolase
MAGDRLPSLNVTDHASTTDPRSAPNRIAGQVKDAVLPVATKVSLRSLPHIPDPVKRLLLGGRSIIVDGNTLDTTLHLMLAAQRAAGMPGLVAGDDVNEARAQLSATAAMFRQYLPAEVAEHTLPGPAGPIRARLYRPLEGVAPAPLLIYYHGGGFCIGGLDTHDDLCRHICRNAGINVLSVDYRLAPEHKAPAAVEDAYAAYRWVLDHPGDVGADPARIAVGGDSAGGNLAAVVAQRCRDEGAPAPALQLLLYPVTDLRGRYRSRTLFADGFFLTAEDMDWFTAHYLDGSGVDEKDPRVSPLLADDLSGLAPALVVTAGFDPLRDEGNEYAEAMRAAGVPVDLREYGSLIHAFANFFPLGGGSATATAEVISALRAHLSRV
>NZ_LT906483.1|WP_003927782.1|1693118_1693535_+|OsmC-family-protein
MTELWVERTGARRYTGRSSRGAEVLIGSEDVEGVFTPGELLKIALAACSGMASDQPLRRRLGDDYPATIRVSGAADREQERYPLLEEKLELDLSGLSEQERDRVLTVVQRAIDQVCTVGRTLQSGTKVDFEVVDVGRD
>NZ_LT906483.1|WP_003927783.1|1693521_1693821_+|acylphosphatase
MDATDRRDEPEVRLTAWVHGHVQGVGFRWWTRSRALELGLTGYAANKPDGRVQVVAQGPRSACEQLLALLRGGQTPGRVDTVVADWTEPGDPIDGFTER
>NZ_LT906483.1|WP_003927784.1|1693847_1697435_+|chromosome-segregation-protein-SMC
MYLKSLTLKGFKSFASPTTLRFEPGITCVVGPNGSGKSNVVDALTWVMGEQGAKTLRGGKMEDVIFAGTSSRAPLGRAEVTLTIDNSDNSLPIEYSEVSITRRMFRDGGSEYEINGSSCRLMDIQELLSDSGIGREMHVIVGQGKLAEILESRPEDRRAFIEEAAGVLKHRKRKEKAVRKLEAMSANLARLTDLTTELRRQLKPLGRQAEVARRAQTIQADLRDARLRLAADDLVTRKAEFDNTNAAEATLRREHDEVSERLAVATAELQAQEAAVARLTERAELAQQTWFRLSALAERVGATVRIATERAQHLDTEPEISTGPDPDELEAEADEMAAREAQLQAELAESREQLEAARAELAEREHAAAEAERAHLAAARAEADRREGVARLAGQVDTMRTRVESIDETVARLSVSIEEAAARVEQAQAEFETVQARVGELDAGEVGLDEHHERTVAALRLADERVTELQAAERSAERQVASLRARIEALSVGLERKDGAAWLLENLGDAGLFGSVANLIRVREGYQAAIAAVLGAAADAVAAEDFGAARAAVAALKESDSGRAAIVLGHWSGAVPPIEAALPRGAVWAVDLVEVPDRILGAITAMLHGVVVVDDLTTGLDLVTAQPQLRAVTVDGDLVGAGWIAGGSDRKPSTLEIAAEIDKARAELEAAEKQVGELSAALSGALAEQQARQDAAEQALAALNESDAAISAIYETLGRLGQDVRAAQNEYQRLTRQRDELEANRTRTVEELAELEERLRNAEQEPIFDVEPVDRQASQAAAEAARAVEVEARLAVRTAEERANAVRGRADSLRRAAAAEREARERARRAREARAHAAAVAAAVAESGRLVAQRLGAVVAVAARTRDELAAERQQRAEALARVREEVNELGARITALTDALHRDEVAKAQAAMRIEQLETQVLEQFGMSADDLIAEYGPHVPLPPTELEMAEYEQALERGEQVTKPAPMPYDRATQERRAKRAERELAELGRVNPLALEEFAALEERYNFLSTQLEDVKAARKDLLDVIADVDQRILQLFAEAYTDVEREFREVFATLFPGGEGRLLLTDPNDMLTTGVEVEARPPGKKIKRLSLLSGGEKSLTAVAMLVAIFRARPSPFYVMDEVEAALDDVNLRRLISLFEQLRERSQLIVITHQKPTMEVADALYGVTMRDDGITTVISQRLRGQELVAQPG
>NZ_LT906483.1|WP_110844496.1|1697650_1698445_+|hypothetical-protein
MAEELRVDTELVSAAGGRIKGLAEAIPAPPDVSAPGGEDALSAAIAKRMSEVVDPVIDALPTTKEELKQFAQNVVNAADKYDATDRQIAEEILKRIGAFDEPPAHGGGMPTGGSPTAASTSTAAGVGASAGGMAGASLGGSAGPVGGFEQMMNMPMQMAQQAAQMPMQMAGTVGQVPQQLAQGAQGAMEQVTQFSGPAAGDRHGHEDDRSVDGAESGNPPPEPEPQGPSAVTEQPEGDDDSGQRAPVESPSGFGRAQSNSELVL
>NZ_LT906483.1|WP_081475603.1|1698707_1699622_+|hypothetical-protein
MSVSIASGGDDSPAALPGGGDSEYASANDTGPVNIITEDPTCAAWIPINNKLARIQQNGWHDRDRSIPAETWTSRQRAQYEEVAEAMRDAADQVSKLMKVTPNRAMRLLYEQFIAYARAYSNAVPDYEPADNFLVGVVGAVSSALVRVCLSIEYGAAPARAPFVAALSPSLLTDKVAAAAPPQPFLGNGDPTCSDWYALLAQFREDTVAWQNLDAEIPANEWSQEQRKTIDDIGPVMKEFANDIEELGRRSSNATLQDLALLAAQYRRAYVESLPTYTSVDSYLSGASAGITSAIIDGCRAAEA
>NZ_LT906483.1|WP_162292341.1|1699852_1701220_+|ISL3-family-transposase
MGVLDASRSKGASLPQTSGSLLLGLDGVVVESVHVDLDRTRTIYVRTAEQWGGVCPGCMVRSARSKGWVSTRPRDIKIGPDIPRIVWRKRKWVCANMCCDRKSFTESVPSIPPRARVTVRAKREMASAVLDDDRSVKAVAAAYGCTWNTCHDAVIATADPVLAGEPEAVSVLGIDETRRGKAKWETCSQTGTRSWVDRFDTGLVDITGTGGLLVQVNGRAAKPVTDWLDQRDPGWKATIEFVAIDMSVTYANAARQALPHAKLIVDRFHLVKRANEMVDEVRRRTTQAHRLRRGRKSDPEWINRRRLLRAAERLTDEQRHKLFVKLTSADPNGDIAAAWIAKELLRDVLVCTARGGLTYEIRDALYRFYTFCAACSVPEISKLARTISAWQEPMILAIQTGLSNARSEGYNRIIKHVGRIAFGFRNPENQRRRVRWACTRQSRRTPPSTKQVRPC
>NZ_LT906483.1|WP_040546470.1|1701593_1701818_+|helix-turn-helix-domain-containing-protein
MAGGPEEIFTLEEVAAYLKVGKRTVYRLVAAHELPAFKVGGSWRFRRQEIDQWINEQTITEQSGGASSKRPHDV
>NZ_LT906483.1|WP_050811926.1|1701947_1705253_+|site-specific-DNA-methyltransferase
MLALVPADGSPIGNKALRREIETQLAKEGVSISDDDYWQAHSALVAQGLLVKGQGRGGSVRLPSNLVKDSSAGAERTPFELTTEERSTRSASEDSGKLTRAHKAHAVTKRQTAGDDANQILSYRHTDKRVNNPEVGMVNPRTDPDAGKTRWAYDPHLDPALQFDPQRSRIEKLIDDALASGDTVQMKAALEELKRLQSPYLNWAGKAERTSFEVDTVSLHVHERIDPASILSAVRKAMKGEGKSKGMEKALQPGLFDAPFENLPLRDAIDFYRHEKGWANRLIAGDSLLVMNSLLQKESMAGKVQMIYIDPPYGIKYGSNFQPFVNKRDVKDRKDEDLTQEPEMIKAFRDTWELGIHSYLTYLRDRLLLARELLHESGSAFVQISDENVHHVRELMDEIFGDKNFCSLIYFSTTTGQASRLLPSAGDYIVWYAKDRNKVKYRQLYLSKGDGNFASYSNAKRQDGSIIKLSKSQLESLSSLPGNWKIFSAQNLRSQGGGDDGARTFTTMGRPFDCGPNHHWKTPPNPGLERLARAHRIIINGDTPNYVRYIDDHPVFPINERWLDTAIAGFSGDSKQYVVVTPAKVIERCVLMSTDPGDLVLDPTCGSGTTAYVAEKWGRRWITCDTSRVAITLAKQRLMTASYDYYELKYPHEGLKGGFIYKTVPHVTLKWIANNPEIDDIYERMHPAIEKALAELNAALRASPPKPFAVTEGGRKGKKVDFSLPASQKEKLPSGEEVMAGALLEWEVPFDFPEDWPDAARKPFEAFHAARQAMQKRMDESIAAHADQEILYDQPQVAKNRLRITGPFTVEAAPFPTVKSLDEAAGPDEADASIARTGESGRQHQWRDELLKTGIRGRGGQVLKFADLEPLPSDPSIRHLHAIGHLDSGERVVVSFGPEHAALEQRQVAQALTEAEKLRPQPAFIVFCAFTFDPEAAKDIDETRWPGVTLLKAQMNTDLLTEDLKKARASNQSFWLMGQPDVEVRQRKDGLYEVEVHGFDYFDTVKGELVSGGKSKIAMWSLDTDYDERSLFPRQMFFPMAGKGEGWEKLKKNIRAELDESRLQSFHGTVSLPFEAGEHRKVAVKIVDDRGIESLKVINLD
>NZ_LT906483.1|WP_003924852.1|1705263_1708149_+|DEAD/DEAH-box-helicase-family-protein
MTQPKSLIINSPFERPTHHWRRVSDQRLELVEGRRPAGYEIFDTRNNTVRSVELELVNRIRERVDEWRDAGYPGVTAVTRALLEHWRDPEANRPYPFYFCQLEAIETLIWHVEAPAEFKQGIFVPGDGGPFERLCNKMATGSGKTTVMAMIITWQVLNALTYPKRNKDFSRAIFIVAPGLTVKERLQVLHTGHPENYYDAFLLCPNEAMRQKLNQMELLIGNWHSLMPLKDQDRSVVKKGAESDEAYVRRVLGKLAGHKDIVVINDEAHHAYRKPAEVKVSKKDAEELGIDLDEATRWIEGLDRIHKMRRISHCFDLTATPFAPTGKTSTETALFPWVISDFGLNDAIESGLVKTPRVVVRDNALPNAQTYKSKLYHLYREPEVGQDLNRRGAEPHEPLPQLVQEAYTLLGADWRETLKAWQEAGHTSPPVMLTVCNRTETAARIEYYFRNGDAYWPELKAPERTLRVDSKVLEKAEIGESATSDKAYEEVLKNIVEAAGIPESRKQPLRAMKKEELLRAIVDNVGKRGTPGQDLQNVISVAMLSEGWDAKNVTHIMGLRAFTSQLLCEQVIGRGLRRVSYDTEAVVCPDGQTRQLFKSEYVNVFGVPLSIFQDVGEGGDPPPPPKPSTQIESLAERSSLEITWPNVLRVDVIVRPELTVDWSKMPPLKIDPAQVVVTADLAPALGGAADMSKAVSIDLEAIPEEFRLQRLLFRAAHKAMEALQHSFTGSRELLIQQLVRLVEQFFNSDRLEIPSLFHQDPLRKRILIALSIDTIVSHVVNQIQQQNSNRLEPVFDQEFPIGSTRFMRTWYTTKPCLETVKSQISHAVADSAWEHYTATHLENLNEVAAYAKNDHLGFQIYYLWRGSKRKFLPDYLIRLANGKQLVLEIKGEDSDQNRAKRMALDAWVRAVNARGGFGTWCWDVVKAEPSKLHDVILHHAKTATFSEPIGENLITSVLASP
>NZ_LT906483.1|WP_003887539.1|1708460_1709822_+|DDE-type-integrase/transposase/recombinase
MLTWEDDVEVHALAKRGWTISAIARHTGFDRKTVRKYLAGDGTPGVRARPGPDPFDPFVDYVTARLTEDPHLWARTLFDELEDLGFGLSYQSLTRNIRTRNLRPVCEACRTATGRPNAVIPHPPGEETQWDWLELPDPPASWGWGKTAHLLVGSLSHSGKWRGNLAPSEDQPHLVAGLDRVTRGLGGLTRVWRFDRMATVCDPGSGRVTASFAGVAKHYGVSVAICPPRRGNRKGVVEKVNHTAAQRWWRTLADDLTVEAAQASLDRFARVRGDTRLRATADGRSSVAVVAKTEPLAPVPAQAYPVIVAETRTASRQAMVSYRGNRYSVPPELAAAQVVVSHPVGGEHLDIATTAGIVVARHRMAADGLGVMVRDSGHVIALDTAAMATAATGRPHRRKERIPPGPAAKAAAAQLLRIKQADSSVHQSSTPSTDSTVIDLSAYERAAQNRTLQ

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Crispr_ID: NZ_LT906483_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906483_2

4425654-4425749

Orphan

Consensus_repeat	Method
TCTGGAGAGGGTCTCGAGAGGGTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906483_2

>merge|NZ_LT906483|2|4425654-4425749|CRISPRCasFinder
AATTGGGACCCTCTGGAGAGGGTCTCGAGAGGGTCTCGAGAGGGTCTTGCCGACCTGGGGAAACGGGACCCTCTGGAGAGGGTCTCGAGAGGGTCT

>NZ_LT906483|2|2|4425654-4425749|CRISPRCasFinder
AATTGGGACCCTCTGGAGAGGGTCT	CGAGAGGGTCTCGAGAGGGTCTTGCCGACCTGGGGAAACGGGACCC
TCTGGAGAGGGTCTCGAGAGGGTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906483.1\|WP_003925151.1\|4422132_4422366_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_003925150.1\|4421630_4421924_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_131588030.1\|4419697_4419928_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377917
NZ_LT906483.1\|WP_003925161.1\|4427826_4428072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_003925153.1\|4423471_4424044_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_LT906483.1\|WP_003925166.1\|4429268_4429538_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_131588033.1\|4429534_4430335_-\|RusA-family-crossover-junction-endodeoxyribonuclease	unknown	unknown	gnl\|CDD\|377564
NZ_LT906483.1\|WP_131588032.1\|4428068_4428329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_003925163.1\|4428325_4428478_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_081475473.1\|4427078_4427264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_040546790.1\|4428474_4429014_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_003925152.1\|4422836_4423415_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_131588031.1\|4427392_4427827_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_050811954.1\|4424177_4424480_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_081475472.1\|4424509_4424980_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378932
NZ_LT906483.1\|WP_003925148.1\|4419548_4419698_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_040546634.1\|4419316_4419562_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_061252229.1\|4429029_4429269_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906483.1\|WP_081475493.1\|4419960_4421364_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227697
NZ_LT906483.1\|WP_003925157.1\|4426367_4426520_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906483.1\|WP_081475472.1\|4424509_4424980_-\|hypothetical-protein	gnl\|CDD\|378932	pfam12710, HAD, haloacid dehalogenase-like hydrolase.	0.00972843
NZ_LT906483.1\|WP_003925153.1\|4423471_4424044_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	5.0181e-52
NZ_LT906483.1\|WP_131588033.1\|4429534_4430335_-\|RusA-family-crossover-junction-endodeoxyribonuclease	gnl\|CDD\|377564	pfam05866, RusA, Endodeoxyribonuclease RusA. This family consists of several bacterial and phage Holliday junction resolvase (RusA) like proteins. The RusA protein of Escherichia coli is an endonuclease that can resolve Holliday intermediates and correct the defects in genetic recombination and DNA repair associated with inactivation of RuvAB or RuvC.	3.59342e-16
NZ_LT906483.1\|WP_131588030.1\|4419697_4419928_-\|hypothetical-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0.00691708
NZ_LT906483.1\|WP_081475493.1\|4419960_4421364_-\|hypothetical-protein	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	2.59626e-37

>NZ_LT906483.1|WP_081475472.1|4424509_4424980_-|hypothetical-protein
MPPVMDRKSSRARAENAWRLRVRGRLWREIAEELGYRSPRSAQKAVEDFLARTPPTDAETLRRAMGDGLTMIRQKLLDALDAAEEAGDHQAVATLGRAAADTIEKQAKLAGLHIAIPQQIELNVRSAAAVLERAEQELLAIAQQPQSEIVDAEVVE
>NZ_LT906483.1|WP_050811954.1|4424177_4424480_-|hypothetical-protein
MAVARDVAEGRLQPDQLDALAADECRALFGTVVGAGDALWELHVDVARQVLALGGVPANELAEWLAVTRAAEAEAEPEAEVGGSWIERALAQLGDGDEDG
>NZ_LT906483.1|WP_003925153.1|4423471_4424044_-|recombinase-family-protein
MTGQLVGYIRVSTLDQNTERQLDGIDLDKVFTDKASGKDTNRPALDECLRYVREGDTLIVHSMDRLARSLPDLRRLVDELTARGVAVRFVKEGLTFTRDESDPCSVLMLSVMGAVAEFERSLMLQRQREGIAIAKAKGVYKGRKPALSDAQAAEVAQRLSAGESATELAREYGVSRATVYNVRNRARGAA
>NZ_LT906483.1|WP_003925152.1|4422836_4423415_+|hypothetical-protein
MAQLSGCLQLAGAGLTLLGAIITAAGIASGLKRTDDRFQRFLQGVRELPQALLARIQQVVDRMADAYDISPQEPHKASFTVGVDVDVTMDARAGMYTPRIRGGTAEKQLETIWNDITQLYDNLRQTQQAIAAIRVDTGPIYATIGAVKEEVKEEIAEAQNLVAARDFCVAIIGAALVVAGTGLSFAGILLGL
>NZ_LT906483.1|WP_003925151.1|4422132_4422366_+|hypothetical-protein
MSTRKPRHYLNQAQFAERIGVTPSAMGRYKLPEPDVIVGPINEDGTIPRGTVRGWTRETIDQWNATRPGRGARTDLH
>NZ_LT906483.1|WP_003925150.1|4421630_4421924_-|hypothetical-protein
MRVGLMFASAAALAFGLTAAGPALAVPGDPMPGCETQVFANWCDGPIREDGSWKRCLFAHGQYGGGVYTPPVQNCFIVPGPDRIPPLPLGQPPYHID
>NZ_LT906483.1|WP_081475493.1|4419960_4421364_-|hypothetical-protein
MARRLDPRFNVTPTIRLLSDLAVRAVRQRNQRDIVNTPPRTGKSKLLAVWLPVWALGEDPDMQIVIISNGDDLAQEHSREVREIIREHSGFLGYRIAQDKTAVGRWRVEGRRGGMLAAGINSGVVGFGADLMIIDDPVKDAAQADSAAHRRRVLNEYQGSLSTRVHPGGSVFLVMTRWHQQDLAGSLLELEPDRWRATNVPAVSEPGVPDALGRPPGVTMVSALGFTPRDFEDRRRSVGERMWWAQYQGVPSSPEGGLVKREWLNAWRLKVAPQNPVLTVVGVDPSDSGSGDACGLVAASLMPDGVRVLIADKSAPMTSDEWARAAVDLAVEVGASEIAVEAFAARETYTRVVREALRRARVDWPIRVSGWPPKGRARVGDAVARSSALLQGLETGMARLAGYFPDFEEAAVGWLAGRHQPDSLAALVVADDVLLNSRGRSWELAAPVGVAGGSVTSVDDWMRRKVG
>NZ_LT906483.1|WP_131588030.1|4419697_4419928_-|hypothetical-protein
MASEPDLRAIRRRSWSGDPPAKQPPPAPRPPVSIRELVDALTELAERVGWDAPVEGRDGDPVQVVDAGDGRGVGVF
>NZ_LT906483.1|WP_003925148.1|4419548_4419698_-|hypothetical-protein
MCGPRWAVAECLHEHVYEGVRQVNLAGEVLRDDPAECADCGLVFGDDRP
>NZ_LT906483.1|WP_040546634.1|4419316_4419562_-|hypothetical-protein
MTAPESRLAALPDAAIGLALGMSVAQPDARHAGRVSVLIDELRRRGVFDAVMAALDPELAQSIRLLDSVDRGQRWAQTGRH
>NZ_LT906483.1|WP_003925157.1|4426367_4426520_-|hypothetical-protein
MSDENRCPDETVGHCNHHDDHAWVHDCTHTPGHVGPHECDCGHTWTTADD
>NZ_LT906483.1|WP_081475473.1|4427078_4427264_-|hypothetical-protein
MEQPTAVIADAIAGFMPEGDGGQDGLANLGNAHQIKAALRAAGYVIVRVADIAFEGRDTNG
>NZ_LT906483.1|WP_131588031.1|4427392_4427827_-|hypothetical-protein
MRSYDEVIASARDEAPFSNGTEGYGWMENWCYRPCMNPVEVAWRRYENGERKTPPKDYPGGCPLIQAALLGKTPVEWIDQWGGTGPYPIADRFHCIEFRGPDGGSGEPRPRPDPPGMDGLFERPERAVRMLAQPHEAREAVPVP
>NZ_LT906483.1|WP_003925161.1|4427826_4428072_-|hypothetical-protein
MTAQLALFGDDSLPVDSGTHVQVAVVFTAQGGPNKGERVYQPQTRHHTREWLDWYATEHLPPQANARLMQRQITISEWEEI
>NZ_LT906483.1|WP_131588032.1|4428068_4428329_-|hypothetical-protein
MSGADRKAAFLVVAYSAKFAADTLYVEPPRPLQPTDDNLRRVLGQCVRPPREHHLPLIRQQFLRDYGKALERITAIHEPGLFEVTP
>NZ_LT906483.1|WP_003925163.1|4428325_4428478_-|hypothetical-protein
MTARIIHQRTGRTVAVFDTYEEAGHYRAELRRQVPPDQPCPYAIRTEEDR
>NZ_LT906483.1|WP_040546790.1|4428474_4429014_-|hypothetical-protein
MLTLDQRWLLMTMGGWQIVDALIGPGGVSHLMQSRWGGFRQKPIPGAPAWMTSWFTGNGRIVSPYGRGVEPRVAVTAAQIDRYATTIPDEIKDQLRDIRAQSTANAVLRGRFCGCGSKPCGYAYMGDRICPPTERQESDARADYLRIRAYEKVYLAKALRLTAHDLEPSGQLDLFEAAL
>NZ_LT906483.1|WP_061252229.1|4429029_4429269_-|hypothetical-protein
MLTWTAHDDIAGAITSVGVRGVYTIQKVGPAWHLSGVGHDGLWMPGLPPGGQILGSLELAQTYAQRVDARPAPAEVSGG
>NZ_LT906483.1|WP_003925166.1|4429268_4429538_-|hypothetical-protein
MNRRPIYVDQRENRKGDFWYAVRGANGETVLTSKMYRQRWRAVRAARAFITSIAPAPVSFTYWSGPTPASVKAGTSRGKLIQHTERVRC
>NZ_LT906483.1|WP_131588033.1|4429534_4430335_-|RusA-family-crossover-junction-endodeoxyribonuclease
MLDMFSALGLGETANTQYMITIPGAPWSKARPRFARNGHVYSRSEDLDAEKRTAAYLRRAVREPFTGNVGLACLFFRPNRQRIDVDNLLKHVCDAANGILWLDDSQCTALMGVVELDAERPRTVVVVGEHISTLKRGSDDSVPCRSCGKLVGRGSRARDQPPKTCSRACRQKSLGYPDLAELVPCGHCGRRYRRRVRTQKFCGEGCRVDSRRNARKAASAPFSRCADCGKELTHRRGGRCRDCWKADVRARKRSAGVNIRVEGELA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

34966 : 105533

Mycobacterium_phage(44.44%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_040547465.1\|34966_35728_+\|protease	hydrogenase maturation protease	NA	NA	NA	NA
WP_040547467.1\|35733_35967_+	hypothetical protein	NA	NA	NA	NA
WP_003925671.1\|35970_37269_+	hypothetical protein	NA	NA	NA	NA
WP_003925672.1\|37280_38207_+	NifU family protein	NA	NA	NA	NA
WP_003925673.1\|38203_39394_+	hypothetical protein	NA	NA	NA	NA
WP_003925674.1\|39411_41856_+	carbamoyltransferase HypF	NA	NA	NA	NA
WP_003925675.1\|41859_42114_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_003925676.1\|42110_42884_+	hypothetical protein	NA	NA	NA	NA
WP_003925677.1\|42880_43600_+	SIS domain-containing protein	A0A067XQR2	Caulobacter_phage	1.2e-08	35.7
WP_003925678.1\|43592_44669_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_003925679.1\|44690_44960_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_003925680.1\|44975_46121_+	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_050812028.1\|46180_46897_+	hypothetical protein	NA	NA	NA	NA
WP_003925682.1\|46893_47739_+	hypothetical protein	NA	NA	NA	NA
WP_003925683.1\|47726_48641_-	HNH endonuclease	NA	NA	NA	NA
WP_040547000.1\|48772_50065_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_003925685.1\|50356_50566_+	hypothetical protein	NA	NA	NA	NA
WP_003925686.1\|50617_51130_+	PPOX class F420-dependent oxidoreductase	NA	NA	NA	NA
WP_003925687.1\|51119_51596_+	nitroreductase family deazaflavin-dependent oxidoreductase	NA	NA	NA	NA
WP_003925688.1\|51576_52443_-	thioesterase family protein	NA	NA	NA	NA
WP_003925689.1\|52488_52818_-	N-acetyltransferase	NA	NA	NA	NA
WP_003925690.1\|52914_53886_-	pirin family protein	NA	NA	NA	NA
WP_003925691.1\|53939_54221_+	DivIVA domain-containing protein	NA	NA	NA	NA
WP_061252242.1\|54523_55582_+	DUF1942 domain-containing protein	NA	NA	NA	NA
WP_061252248.1\|55588_57232_-	serine/threonine protein kinase	A0A0G2Y6J2	Acanthamoeba_polyphaga_mimivirus	2.3e-12	26.5
WP_003925694.1\|57460_57754_-	WhiB family transcriptional regulator	NA	NA	NA	NA
WP_003925695.1\|58079_58889_+	hypothetical protein	NA	NA	NA	NA
WP_003925696.1\|58893_60339_-	ATPase	NA	NA	NA	NA
WP_003925697.1\|60963_61827_+	ESX secretion-associated protein EspG	NA	NA	NA	NA
WP_003925699.1\|61969_63691_+	type VII secretion AAA-ATPase EccA	V5UQM2	Mycobacterium_phage	4.0e-63	32.8
WP_003925700.1\|63694_65155_+	type VII secretion protein EccB	NA	NA	NA	NA
WP_003925701.1\|65154_67383_+	type VII secretion protein EccCa	X2JLG5	Bacillus_phage	4.0e-15	32.3
WP_003925702.1\|67382_69140_+	type VII secretion protein EccCb	A0A142F150	Bacillus_phage	6.8e-10	25.6
WP_040547004.1\|69311_69608_+	PE family protein	NA	NA	NA	NA
WP_040547006.1\|69653_70961_+	PPE family protein	NA	NA	NA	NA
WP_003925705.1\|71047_71350_+	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_003925706.1\|71380_71668_+	WXG100 family type VII secretion target	A0A2I6AZH7	Macacine_betaherpesvirus	1.8e-24	65.3
WP_003925707.1\|71770_73207_+	AAA family ATPase	NA	NA	NA	NA
WP_003925708.1\|73203_74757_+	type VII secretion integral membrane protein EccD	NA	NA	NA	NA
WP_003925709.1\|74768_75071_+	hypothetical protein	NA	NA	NA	NA
WP_003925710.1\|75077_75545_-	hypothetical protein	NA	NA	NA	NA
WP_003925711.1\|75609_77433_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003925712.1\|77675_78218_+	hypothetical protein	NA	NA	NA	NA
WP_040547010.1\|78695_79922_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_131588041.1\|79939_80650_+	hypothetical protein	NA	NA	NA	NA
WP_131588042.1\|80840_81779_+	hypothetical protein	NA	NA	NA	NA
WP_040547486.1\|83298_84123_+	hypothetical protein	NA	NA	NA	NA
WP_131588043.1\|84200_85340_+	hypothetical protein	NA	NA	NA	NA
WP_131807465.1\|87625_88384_+	hypothetical protein	NA	NA	NA	NA
WP_095176397.1\|88461_89868_+\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	2.6e-81	42.2
WP_081475407.1\|90898_91198_-	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_003923665.1\|91306_92968_+	hypothetical protein	NA	NA	NA	NA
WP_157997563.1\|93108_93582_+	hypothetical protein	NA	NA	NA	NA
WP_003923522.1\|96171_97494_-\|transposase	IS256 family transposase	A0A2P1JQX9	Mycobacterium_phage	7.9e-237	95.2
WP_095176399.1\|98649_100056_-\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	2.6e-81	42.2
WP_003925023.1\|100441_101017_+	hypothetical protein	NA	NA	NA	NA
WP_131588021.1\|101042_102149_+	hypothetical protein	NA	NA	NA	NA
WP_131588020.1\|102444_103413_+	hypothetical protein	NA	NA	NA	NA
WP_095176403.1\|103895_105533_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1574753 : 1582594

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003924911.1\|1574753_1575623_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	1.1e-05	28.0
WP_003924912.1\|1575627_1576779_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	2.2e-57	35.5
WP_040546521.1\|1576804_1577899_-	DNA polymerase IV	F1C5A5	Cronobacter_phage	1.8e-13	26.0
WP_050811930.1\|1577895_1578525_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_040546525.1\|1578612_1579197_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.4e-07	32.4
WP_003924916.1\|1579748_1579988_+	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	3.7e-20	64.4
WP_003924917.1\|1580000_1580444_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA
WP_081475457.1\|1580410_1582594_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	2.6e-213	51.8

DBSCAN-SWA_3

3442295 : 3503325

Bacillus_phage(30.0%)

integrase,transposase

attL 3447044:3447103|attR 3464777:3466032

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095176457.1\|3442295_3443702_-\|transposase	IS1380 family transposase	A0A222ZN33	Mycobacterium_phage	3.4e-81	42.4
WP_095176459.1\|3443988_3444786_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.9e-24	33.3
3447044:3447103	attL	NA	NA	NA	NA
WP_003923659.1\|3451476_3452058_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_040545936.1\|3452047_3453031_-	aromatic ring-hydroxylating dioxygenase subunit alpha	NA	NA	NA	NA
WP_003923657.1\|3453173_3454169_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_003923653.1\|3454669_3456604_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	5.0e-06	26.0
WP_003923652.1\|3456621_3457677_-\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	4.1e-10	29.2
WP_050811921.1\|3459638_3460373_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_040546436.1\|3460472_3460769_+	hypothetical protein	NA	NA	NA	NA
WP_040546438.1\|3460921_3461155_+	hypothetical protein	NA	NA	NA	NA
WP_131588016.1\|3461242_3461704_+	hypothetical protein	NA	NA	NA	NA
WP_003924812.1\|3461721_3462540_+	alpha/beta fold hydrolase	A0A249XU20	Mycobacterium_phage	4.7e-06	26.1
WP_040546440.1\|3462540_3463428_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_095176455.1\|3464904_3465712_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_095176461.1\|3465718_3466639_-\|transposase	transposase	NA	NA	NA	NA
3464777:3466032	attR	NA	NA	NA	NA
WP_003924143.1\|3466754_3468047_+	sensor histidine kinase	NA	NA	NA	NA
WP_003924142.1\|3468034_3468679_+	response regulator transcription factor	NA	NA	NA	NA
WP_003924141.1\|3468726_3469587_+	hypothetical protein	NA	NA	NA	NA
WP_081475424.1\|3469604_3470705_-	nitronate monooxygenase	NA	NA	NA	NA
WP_003924138.1\|3470704_3471268_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_040546162.1\|3471362_3471698_+	hemophore-related protein	NA	NA	NA	NA
WP_003924136.1\|3471736_3472213_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_003924134.1\|3472273_3473008_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_003924133.1\|3473004_3474867_-	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	1.4e-37	27.5
WP_050811885.1\|3474867_3475812_-	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_003927147.1\|3476277_3476772_-	carbonic anhydrase	NA	NA	NA	NA
WP_131588065.1\|3476864_3477218_-	hypothetical protein	NA	NA	NA	NA
WP_003927145.1\|3477326_3477572_-	hypothetical protein	NA	NA	NA	NA
WP_003927144.1\|3477774_3478752_+	ABC transporter permease	NA	NA	NA	NA
WP_003927143.1\|3478748_3479663_+	ABC transporter permease	NA	NA	NA	NA
WP_003927142.1\|3479659_3481522_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.7e-16	29.4
WP_110844448.1\|3481533_3483261_+	ABC transporter family substrate-binding protein	NA	NA	NA	NA
WP_003927140.1\|3483350_3484742_+	DUF1298 domain-containing protein	NA	NA	NA	NA
WP_003927139.1\|3484776_3487392_-	AAA family ATPase	NA	NA	NA	NA
WP_003927138.1\|3487388_3488573_-	exonuclease SbcCD subunit D	NA	NA	NA	NA
WP_003927137.1\|3488703_3489216_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003927136.1\|3489276_3489846_-	DUF3558 domain-containing protein	NA	NA	NA	NA
WP_110844479.1\|3489842_3490373_-	DUF3558 domain-containing protein	NA	NA	NA	NA
WP_003927134.1\|3490554_3492288_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.1e-42	27.4
WP_040547909.1\|3492296_3494180_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.4e-53	29.4
WP_003927132.1\|3494227_3496390_+	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_110844478.1\|3496580_3496769_+	hypothetical protein	NA	NA	NA	NA
WP_040547402.1\|3496779_3497337_-	hypothetical protein	NA	NA	NA	NA
WP_003927129.1\|3497411_3497615_-	hypothetical protein	NA	NA	NA	NA
WP_040547904.1\|3497723_3498305_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_003927127.1\|3498404_3499214_+	thioesterase family protein	NA	NA	NA	NA
WP_040547401.1\|3499265_3499466_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_081475580.1\|3499477_3501718_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.3e-95	34.3
WP_157997571.1\|3501987_3503325_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

4381064 : 4435404

Mycobacterium_phage(81.63%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_131588026.1\|4381064_4381634_+	hypothetical protein	A0A222ZLN2	Mycobacterium_phage	1.6e-24	60.2
WP_003925109.1\|4382082_4382763_+	hypothetical protein	NA	NA	NA	NA
WP_157997577.1\|4382716_4383148_+	hypothetical protein	NA	NA	NA	NA
WP_003925111.1\|4383671_4384823_-	cutinase family protein	A0A2K9VEY7	Mycobacterium_phage	8.2e-81	45.8
WP_003925112.1\|4384822_4386007_-	N-acetylmuramoyl-L-alanine amidase	A0A2P1N356	Mycobacterium_phage	1.1e-128	64.2
WP_003925114.1\|4386210_4386918_-	hypothetical protein	G8I4P4	Mycobacterium_phage	1.4e-75	65.0
WP_003925115.1\|4386919_4387336_-	hypothetical protein	Q19YW2	Mycobacterium_phage	1.2e-05	69.6
WP_110844413.1\|4387354_4387639_-	hypothetical protein	G8I875	Mycobacterium_virus	2.1e-14	51.7
WP_040546617.1\|4387674_4388031_-	hypothetical protein	A0A1J0MDR3	Mycobacterium_phage	3.6e-27	55.1
WP_003925118.1\|4388064_4389360_-	hypothetical protein	G8I4P1	Mycobacterium_phage	5.6e-171	65.4
WP_003925119.1\|4389356_4389956_-	hypothetical protein	G8I4P0	Mycobacterium_phage	3.2e-84	71.9
WP_003925121.1\|4390056_4390698_-	hypothetical protein	G8I4N9	Mycobacterium_phage	1.7e-96	73.4
WP_003925122.1\|4390750_4391134_-	hypothetical protein	G8I3R5	Mycobacterium_phage	1.7e-38	62.2
WP_061252280.1\|4391190_4391490_+	hypothetical protein	NA	NA	NA	NA
WP_131588027.1\|4391486_4392635_-	hypothetical protein	G8I4N6	Mycobacterium_phage	3.5e-07	59.1
WP_131588028.1\|4393085_4395614_-	hypothetical protein	G8I4N4	Mycobacterium_phage	1.2e-10	48.6
WP_003925126.1\|4395610_4396651_-	hypothetical protein	G8I4N3	Mycobacterium_phage	7.1e-140	70.5
WP_003925127.1\|4396647_4398081_-	hypothetical protein	G8I4N2	Mycobacterium_phage	7.3e-212	74.9
WP_003925128.1\|4398080_4404185_-	tape measure protein	T2A952	Mycobacterium_phage	3.8e-217	46.0
WP_003925129.1\|4404210_4404708_-	hypothetical protein	V5UNJ3	Mycobacterium_phage	3.8e-27	49.1
WP_003925130.1\|4404743_4405148_-	hypothetical protein	G8I4M9	Mycobacterium_phage	3.2e-40	64.9
WP_131588029.1\|4405134_4405452_-	hypothetical protein	NA	NA	NA	NA
WP_050811951.1\|4405537_4406011_-	hypothetical protein	G8I4M7	Mycobacterium_phage	3.8e-48	60.2
WP_040546620.1\|4406067_4406826_-	hypothetical protein	F1B2P9	Tsukamurella_phage	1.3e-74	54.2
WP_050811952.1\|4406853_4407435_-	hypothetical protein	S5XYN6	Mycobacterium_phage	4.4e-75	72.2
WP_003925135.1\|4407482_4408313_-	hypothetical protein	A0A2P1JRD2	Mycobacterium_phage	1.5e-92	61.6
WP_003925136.1\|4408410_4408899_-	hypothetical protein	A0A076G982	Mycobacterium_phage	1.5e-55	66.2
WP_003925137.1\|4408891_4409302_-	hypothetical protein	A0A0A7RVM7	Mycobacterium_phage	9.1e-51	69.9
WP_003925138.1\|4409311_4409671_-	hypothetical protein	F1B2P4	Tsukamurella_phage	6.6e-21	58.7
WP_040546624.1\|4409672_4410467_-	hypothetical protein	G8I4L8	Mycobacterium_phage	7.9e-75	56.5
WP_003925140.1\|4410557_4412312_-\|capsid	major capsid protein	G8I4L7	Mycobacterium_phage	8.7e-199	67.2
WP_157997578.1\|4412538_4412718_+	hypothetical protein	NA	NA	NA	NA
WP_157997579.1\|4412805_4413159_-	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_040546626.1\|4413689_4413875_-	hypothetical protein	A0A2R4AN68	Mycobacterium_phage	1.9e-08	50.0
WP_003925143.1\|4413879_4416315_-	hypothetical protein	G8I4L5	Mycobacterium_phage	9.0e-279	61.7
WP_050811940.1\|4416314_4418171_-	hypothetical protein	G8I4L4	Mycobacterium_phage	7.3e-188	55.4
WP_040546630.1\|4418213_4418612_-	DUF1360 domain-containing protein	G8I4L3	Mycobacterium_phage	1.4e-27	53.0
WP_110844402.1\|4418664_4419216_-	hypothetical protein	G8I4L2	Mycobacterium_phage	1.5e-51	62.0
WP_040546634.1\|4419316_4419562_-	hypothetical protein	B9W1I8	Mycobacterium_phage	3.2e-11	47.4
WP_003925148.1\|4419548_4419698_-	hypothetical protein	NA	NA	NA	NA
WP_131588030.1\|4419697_4419928_-	hypothetical protein	NA	NA	NA	NA
WP_081475493.1\|4419960_4421364_-	hypothetical protein	G8I4L0	Mycobacterium_phage	2.6e-190	66.5
WP_003925150.1\|4421630_4421924_-	hypothetical protein	G8I4Q1	Mycobacterium_phage	7.1e-13	44.7
WP_003925151.1\|4422132_4422366_+	hypothetical protein	A0A142KB66	Gordonia_phage	1.3e-30	77.9
WP_003925152.1\|4422836_4423415_+	hypothetical protein	NA	NA	NA	NA
WP_003925153.1\|4423471_4424044_-	recombinase family protein	M9Q1K0	Clostridium_phage	2.2e-34	48.0
WP_050811954.1\|4424177_4424480_-	hypothetical protein	G8I4U1	Mycobacterium_phage	7.3e-21	60.0
WP_081475472.1\|4424509_4424980_-	hypothetical protein	G8I4U0	Mycobacterium_phage	2.4e-26	43.8
WP_095176480.1\|4425282_4426290_-	hypothetical protein	A0A1B3AZC9	Gordonia_phage	7.3e-33	38.2
WP_003925157.1\|4426367_4426520_-	hypothetical protein	NA	NA	NA	NA
WP_081475473.1\|4427078_4427264_-	hypothetical protein	NA	NA	NA	NA
WP_131588031.1\|4427392_4427827_-	hypothetical protein	NA	NA	NA	NA
WP_003925161.1\|4427826_4428072_-	hypothetical protein	NA	NA	NA	NA
WP_131588032.1\|4428068_4428329_-	hypothetical protein	NA	NA	NA	NA
WP_003925163.1\|4428325_4428478_-	hypothetical protein	A0A097EWK2	Mycobacterium_phage	2.3e-07	57.4
WP_040546790.1\|4428474_4429014_-	hypothetical protein	NA	NA	NA	NA
WP_061252229.1\|4429029_4429269_-	hypothetical protein	G8I6T5	Mycobacterium_virus	3.0e-14	46.8
WP_003925166.1\|4429268_4429538_-	hypothetical protein	A0A0F6WEQ5	Mycobacterium_phage	3.2e-12	54.3
WP_131588033.1\|4429534_4430335_-	RusA family crossover junction endodeoxyribonuclease	G8I6T4	Mycobacterium_virus	1.2e-38	57.1
WP_003925167.1\|4430370_4431432_-	hypothetical protein	A0A2D1GGG2	Gordonia_phage	9.3e-63	62.7
WP_050811956.1\|4431428_4432316_-	YqaJ viral recombinase family protein	A0A142F2J2	Mycobacterium_phage	6.7e-91	61.0
WP_003925169.1\|4432324_4432474_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_003925170.1\|4432470_4432683_-	hypothetical protein	A0A142K840	Mycobacterium_phage	6.4e-16	59.4
WP_003925171.1\|4432679_4432883_-	hypothetical protein	NA	NA	NA	NA
WP_040546798.1\|4432882_4433140_-	hypothetical protein	A0A142K839	Mycobacterium_phage	4.4e-19	62.5
WP_040546639.1\|4433154_4433454_-	hypothetical protein	NA	NA	NA	NA
WP_003925173.1\|4433450_4433654_-	hypothetical protein	NA	NA	NA	NA
WP_003925174.1\|4433650_4433959_-	hypothetical protein	NA	NA	NA	NA
WP_003925175.1\|4434025_4434586_-	hypothetical protein	NA	NA	NA	NA
WP_003925176.1\|4434582_4435404_-	phage antirepressor KilAC domain-containing protein	E0YQ36	Mycobacterium_phage	3.9e-93	65.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906483

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection