CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906439	Streptococcus merionis strain NCTC13788 chromosome 1	2 crisprs	cas3,DinG,csm6,DEDDh,cas2,cas1,cas4,cas7,cas8c,cas5	1	4	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906439_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906439_1

1353138-1354954

TypeI

I-C

Consensus_repeat	Method
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CRISPRCasFinder
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CRT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	PILER-CR

27 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_LT906439_1

>merge|NZ_LT906439|1|1353138-1354954|CRISPRCasFinder,CRT,PILER-CR
GCGAAATCACGCGCACCCGCAAAGGGTGCGACCTATCTATGTACGAGTTAGCACAAGTTTACAAGCCATTTCAATCCACGCACCCGCGAAGGGTGCGACAAAACGAGCTGGGAACCTCGCAAAAAGCAACCTAATTTCAATCCACGCACCCGCGAAGGGTGCGACTAAGTTGCAGGCAATGGACAATCTGGCCAAAATATTTCAATCCACGCACCCGCGAAGGGTGCGACCTAGCGCCACCATTTCGAGATCCAGTTGGTACTATTTCAATCCACGCACCCGCGAAGGGTGCGACCCTCGGAGCGACAAGTGCTGGAACTTTGCAGACATTTCAATCCACGCACCCGCGAAGGGTGCGACAAATACCCTGTGTCTATTATACCATAAAGGAGAATTTCAATCCACGCACCCGCGAAGGGTGCGACGGGCCTATGGACGACTTTGCTAGACGCTGGCAAATTTCAATCCACGCACCCGCGAAGGGTGCGACTTGCCACCAAGTGCTTCAATGTATAGCTCATTGAATTTCAATCCACGCACCCGCGAAGGGTGCGACCCAATTCGCATCAGCTACATCAACGACTTGTTCCATTTCAATCCACGCACCCGCGAAGGGTGCGACATGACTTATCAAATAAAAAATATCGTAAGACCCATTTCAATCCACGCACCCGCGAAGGGTGCGACATGGTCTAGGTGGTTCATCATCAAAAGCCCCTTATTTCAATCCACGCACCCGCGAAGGGTGCGAAGGTTTAGTCTGTTTTTAACCTAGTTCGAATAGTATTTCAATCCACGCACCCGCGAAGGGTGCGACGTAGCCTCCTGTGCTATAATGAAGCTATCATTACGGATTTCAATCCACGCACCCGCGAAGGGTGCGACTGTCTATGTCGATTTAGGCTTTAATGTTGGTTCCATTTCAATCCACGCACCCGCGAAGGGTGCGACAGTACGAGGACATCTTTATAGATTATCCGCCAGCAATTTCAATCCACGCACCCGCGAAGGGTGCGACTGTTGATAGTCTTTACTCATGATAGCTGTATCAGGATTTCAATCCACGCACCCGCGAAGGGTGCGACGGTCGGAGTCCTGTCAGTGTTTGCACAGCTAGAACGAATTTCAATCCACGCACCCGCGAAGGGTGCGACACAAATCCTAATGTATCATCAAGATATGTACTTATTTCAATCCACGCACCCGCGAAGGGTGCGACAAGGTAATAGTCTTAGTCTCGTAACGATTACTTTATTTCAATCCACGCACCCGCGAAGGGTGCGACTCAAATCACAGAAATTATCGTCACGTCAGCATTGGATTTCAATCCACGCACCCGCGAAGGGTGCGACGCATTGAGCGATACCTGAGAGCATATACTTGGCCTATTTCAATCCACGCACCCGCGAAGGGTGCGACCGAAGTTTTTCATGGACAAATGGAAATCACTCTTATTTCAATCCACGCACCCGCGAAGGGTGCGACTCAACATGTTTCAAAATAGCGTCTCTTGAATTGATTTCAATCCACGCACCCGCGAAGGGTGCGACGTTTCCCGGACTTTCTGCGGCCATACATCAACCAGATATTTCAATCCACGCACCCGCGAAGGGTGCGACTTTAGATACGCGGTCAATGCTGTACTAGCCACCGCAATTTCAATCCACGCACCCGCGAAGGGTGCGACAAAATGAGTTTCGGAGGTAGTTTATGACACCGAATTTCAATCCACGCACCCGCGAAGGGTGCGACTTGATAAGCTGGGTTAATTGAACTTATAAAATCATTTCAATCCACGCACCCGCGAAGGGTGCGAC

>NZ_LT906439|1|1|1353138-1354954|CRISPRCasFinder
GCGAAATCACGCGCACCCGCAAAGGGTGCGAC	CTATCTATGTACGAGTTAGCACAAGTTTACAAGCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAAACGAGCTGGGAACCTCGCAAAAAGCAACCTA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TAAGTTGCAGGCAATGGACAATCTGGCCAAAAT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CTAGCGCCACCATTTCGAGATCCAGTTGGTACT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CCTCGGAGCGACAAGTGCTGGAACTTTGCAGAC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAATACCCTGTGTCTATTATACCATAAAGGAGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GGGCCTATGGACGACTTTGCTAGACGCTGGCAA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTGCCACCAAGTGCTTCAATGTATAGCTCATTGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CCAATTCGCATCAGCTACATCAACGACTTGTTCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ATGACTTATCAAATAAAAAATATCGTAAGACCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ATGGTCTAGGTGGTTCATCATCAAAAGCCCCTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAA	GGTTTAGTCTGTTTTTAACCTAGTTCGAATAGT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GTAGCCTCCTGTGCTATAATGAAGCTATCATTACGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TGTCTATGTCGATTTAGGCTTTAATGTTGGTTCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AGTACGAGGACATCTTTATAGATTATCCGCCAGCA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TGTTGATAGTCTTTACTCATGATAGCTGTATCAGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GGTCGGAGTCCTGTCAGTGTTTGCACAGCTAGAACGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ACAAATCCTAATGTATCATCAAGATATGTACTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAGGTAATAGTCTTAGTCTCGTAACGATTACTTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TCAAATCACAGAAATTATCGTCACGTCAGCATTGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GCATTGAGCGATACCTGAGAGCATATACTTGGCCT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CGAAGTTTTTCATGGACAAATGGAAATCACTCTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TCAACATGTTTCAAAATAGCGTCTCTTGAATTG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GTTTCCCGGACTTTCTGCGGCCATACATCAACCAGAT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTTAGATACGCGGTCAATGCTGTACTAGCCACCGCA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAAATGAGTTTCGGAGGTAGTTTATGACACCGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTGATAAGCTGGGTTAATTGAACTTATAAAATC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC

>NZ_LT906439|1|1|1353138-1354954|CRT
GCGAAATCACGCGCACCCGCAAAGGGTGCGAC	CTATCTATGTACGAGTTAGCACAAGTTTACAAGCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAAACGAGCTGGGAACCTCGCAAAAAGCAACCTA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TAAGTTGCAGGCAATGGACAATCTGGCCAAAAT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CTAGCGCCACCATTTCGAGATCCAGTTGGTACT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CCTCGGAGCGACAAGTGCTGGAACTTTGCAGAC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAATACCCTGTGTCTATTATACCATAAAGGAGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GGGCCTATGGACGACTTTGCTAGACGCTGGCAA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTGCCACCAAGTGCTTCAATGTATAGCTCATTGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CCAATTCGCATCAGCTACATCAACGACTTGTTCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ATGACTTATCAAATAAAAAATATCGTAAGACCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ATGGTCTAGGTGGTTCATCATCAAAAGCCCCTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAA	GGTTTAGTCTGTTTTTAACCTAGTTCGAATAGT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GTAGCCTCCTGTGCTATAATGAAGCTATCATTACGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TGTCTATGTCGATTTAGGCTTTAATGTTGGTTCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AGTACGAGGACATCTTTATAGATTATCCGCCAGCA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TGTTGATAGTCTTTACTCATGATAGCTGTATCAGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GGTCGGAGTCCTGTCAGTGTTTGCACAGCTAGAACGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ACAAATCCTAATGTATCATCAAGATATGTACTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAGGTAATAGTCTTAGTCTCGTAACGATTACTTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TCAAATCACAGAAATTATCGTCACGTCAGCATTGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GCATTGAGCGATACCTGAGAGCATATACTTGGCCT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CGAAGTTTTTCATGGACAAATGGAAATCACTCTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TCAACATGTTTCAAAATAGCGTCTCTTGAATTG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GTTTCCCGGACTTTCTGCGGCCATACATCAACCAGAT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTTAGATACGCGGTCAATGCTGTACTAGCCACCGCA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAAATGAGTTTCGGAGGTAGTTTATGACACCGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTGATAAGCTGGGTTAATTGAACTTATAAAATC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC

>NZ_LT906439|1|1|1353205-1354954|PILER-CR
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAAACGAGCTGGGAACCTCGCAAAAAGCAACCTA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TAAGTTGCAGGCAATGGACAATCTGGCCAAAAT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CTAGCGCCACCATTTCGAGATCCAGTTGGTACT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CCTCGGAGCGACAAGTGCTGGAACTTTGCAGAC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAATACCCTGTGTCTATTATACCATAAAGGAGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GGGCCTATGGACGACTTTGCTAGACGCTGGCAA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTGCCACCAAGTGCTTCAATGTATAGCTCATTGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CCAATTCGCATCAGCTACATCAACGACTTGTTCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ATGACTTATCAAATAAAAAATATCGTAAGACCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ATGGTCTAGGTGGTTCATCATCAAAAGCCCCTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAA	GGTTTAGTCTGTTTTTAACCTAGTTCGAATAGT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GTAGCCTCCTGTGCTATAATGAAGCTATCATTACGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TGTCTATGTCGATTTAGGCTTTAATGTTGGTTCC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AGTACGAGGACATCTTTATAGATTATCCGCCAGCA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TGTTGATAGTCTTTACTCATGATAGCTGTATCAGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GGTCGGAGTCCTGTCAGTGTTTGCACAGCTAGAACGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	ACAAATCCTAATGTATCATCAAGATATGTACTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAGGTAATAGTCTTAGTCTCGTAACGATTACTTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TCAAATCACAGAAATTATCGTCACGTCAGCATTGG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GCATTGAGCGATACCTGAGAGCATATACTTGGCCT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	CGAAGTTTTTCATGGACAAATGGAAATCACTCTT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TCAACATGTTTCAAAATAGCGTCTCTTGAATTG
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	GTTTCCCGGACTTTCTGCGGCCATACATCAACCAGAT
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTTAGATACGCGGTCAATGCTGTACTAGCCACCGCA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	AAAATGAGTTTCGGAGGTAGTTTATGACACCGA
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC	TTGATAAGCTGGGTTAATTGAACTTATAAAATC
ATTTCAATCCACGCACCCGCGAAGGGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906439.1\|WP_018374433.1\|1350911_1351886_-\|nucleoside-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|179431
NZ_LT906439.1\|WP_018374430.1\|1349205_1349949_-\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|235038
NZ_LT906439.1\|WP_018374438.1\|1356427_1357099_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|224385
NZ_LT906439.1\|WP_018374428.1\|1347282_1347927_-\|segregation/condensation-protein-B	unknown	unknown	gnl\|CDD\|234657
NZ_LT906439.1\|WP_018374443.1\|1363453_1364053_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372434
NZ_LT906439.1\|WP_026217033.1\|1364062_1366051_-\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_LT906439.1\|WP_018374427.1\|1346463_1347186_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_LT906439.1\|WP_018374429.1\|1347910_1348630_-\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|234635
NZ_LT906439.1\|WP_018374440.1\|1357952_1359830_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl\|CDD\|273839
NZ_LT906439.1\|WP_018374437.1\|1355405_1356431_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_LT906439.1\|WP_018374441.1\|1359829_1360567_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|273847
NZ_LT906439.1\|WP_018374434.1\|1351882_1352677_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_LT906439.1\|WP_083903332.1\|1346213_1346462_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|178815
NZ_LT906439.1\|WP_018374431.1\|1349935_1350406_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341400
NZ_LT906439.1\|WP_018374442.1\|1360846_1363255_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_LT906439.1\|WP_018374432.1\|1350402_1350918_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223695
NZ_LT906439.1\|WP_018374439.1\|1357100_1357949_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	COG3649_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_LT906439.1\|WP_018374445.1\|1366132_1366459_-\|putative-heavy-metal-binding-protein	unknown	unknown	gnl\|CDD\|179228
NZ_LT906439.1\|WP_018374436.1\|1355101_1355395_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_LT906439.1\|WP_018374435.1\|1352727_1352964_-\|YneF-family-protein	unknown	unknown	gnl\|CDD\|226286

Protein	Function_ID	Function_description	E-value
NZ_LT906439.1\|WP_018374433.1\|1350911_1351886_-\|nucleoside-triphosphate-diphosphatase	gnl\|CDD\|179431	PRK02491, PRK02491, putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed.	6.03417e-177
NZ_LT906439.1\|WP_018374430.1\|1349205_1349949_-\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|235038	PRK02436, xerD, site-specific tyrosine recombinase XerD.	1.04476e-94
NZ_LT906439.1\|WP_018374438.1\|1356427_1357099_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|224385	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense mechanisms].	1.36424e-28
NZ_LT906439.1\|WP_018374428.1\|1347282_1347927_-\|segregation/condensation-protein-B	gnl\|CDD\|234657	PRK00135, scpB, segregation and condensation protein B; Reviewed.	2.31101e-83
NZ_LT906439.1\|WP_018374443.1\|1363453_1364053_-\|HD-domain-containing-protein	gnl\|CDD\|372434	pfam13023, HD_3, HD domain. HD domains are metal dependent phosphohydrolases.	1.19591e-39
NZ_LT906439.1\|WP_026217033.1\|1364062_1366051_-\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_LT906439.1\|WP_018374427.1\|1346463_1347186_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	3.98597e-104
NZ_LT906439.1\|WP_018374429.1\|1347910_1348630_-\|segregation/condensation-protein-A	gnl\|CDD\|234635	PRK00104, scpA, segregation and condensation protein A; Reviewed.	1.90221e-103
NZ_LT906439.1\|WP_018374440.1\|1357952_1359830_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|273839	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. We designate this family Csd1 (CRISPR/Cas Subtype DVULG protein 1). The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria. In a few species (Xanthomonas axonopodis pv. citri str. 306 and Streptococcus mutans UA159), homology to this protein family is split across two tandem genes; the trusted cutoff to this family is set low enough to capture at least the longer of the two.	6.0728e-108
NZ_LT906439.1\|WP_018374437.1\|1355405_1356431_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_LT906439.1\|WP_018374441.1\|1359829_1360567_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|273847	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This small Cas family is represented by CT1134 of Chlorobium tepidum. This family belongs to a set of several Cas protein families, one each for a number of different CRISPR/Cas subtypes, that share a region of N-terminal sequence similarity modeled by TIGR02593. This family represents the Dvulg subtype of CRISPR/Cas locus.	2.61715e-93
NZ_LT906439.1\|WP_018374434.1\|1351882_1352677_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	6.81576e-134
NZ_LT906439.1\|WP_083903332.1\|1346213_1346462_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|178815	PRK00041, PRK00041, hypothetical protein; Validated.	3.15238e-38
NZ_LT906439.1\|WP_018374431.1\|1349935_1350406_-\|CBS-domain-containing-protein	gnl\|CDD\|341400	cd04643, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	4.70441e-55
NZ_LT906439.1\|WP_018374442.1\|1360846_1363255_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.35004e-78
NZ_LT906439.1\|WP_018374432.1\|1350402_1350918_-\|metallophosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	1.28387e-44
NZ_LT906439.1\|WP_018374439.1\|1357100_1357949_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	7.7755e-138
NZ_LT906439.1\|WP_018374445.1\|1366132_1366459_-\|putative-heavy-metal-binding-protein	gnl\|CDD\|179228	PRK01119, PRK01119, putative heavy metal-binding protein.	1.02158e-46
NZ_LT906439.1\|WP_018374436.1\|1355101_1355395_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.55543e-33
NZ_LT906439.1\|WP_018374435.1\|1352727_1352964_-\|YneF-family-protein	gnl\|CDD\|226286	COG3763, COG3763, Uncharacterized protein conserved in bacteria [Function unknown].	5.50468e-25

>NZ_LT906439.1|WP_018374435.1|1352727_1352964_-|YneF-family-protein
MNIGLAILLIVLALAGGTFLGAFLVRKQIEKDFAENPRLNVDAVRAMMSSMGQKPSEAKVQQVYRQIKASQKEATKKK
>NZ_LT906439.1|WP_018374434.1|1351882_1352677_-|glutamate-racemase
MDNRPIGFLDSGVGGLTVVREFMRQLPHERVIFVGDQARAPYGPRPAEQIRKYTWEMVRFLLTKDVKMIVLACNTATSVVWEEIKAELDIPVLGVILPGASAAIKASRLGKIGVLGTQMTINSDIYRQKIQSLSPDTEVTSLACPRFVPLVESNELDSSLAKKIIYETLQPLKGTIDTLVLGCTHYPLLRPIIQNAMGPEVKLIDSGAETARDISVLLNYFEINAARDAAEKHHQFYTTASPEAFQKMAESWLGQRIEVEHVKL
>NZ_LT906439.1|WP_018374433.1|1350911_1351886_-|nucleoside-triphosphate-diphosphatase
MNEKSPKIFEYRDDLDWFVGAVSDYTYISSFVDDEVHFQIQHDLAQLLENQQSSEDKGIHIHVITYSSVFKLIRFAVEMINESFGRNLVVKQHQGAILVLENDQLLQVVLPEEGVPLESFTGSSEDLGDMILIATRNEGKTNEFREFFANLGYGVQNLNDFPDLPEVEETGMTFEENARLKAETIAEMTGKMVLADDSGLKVDALGGLPGVWSARFSGPDATDDTNNQKLLHELAVVFEQKDRSAQFHCTLVLAKPGKASLVVEADWPGFIAYEAKGEHGFGYDPLFIVADTGKRAAELTTEEKNSQSHRALALKKLLEVFPTW
>NZ_LT906439.1|WP_018374432.1|1350402_1350918_-|metallophosphoesterase
MVTRFIIMSDSHGDRGIVEDIKARYQGKVAALFHNGDSELDASDSLWDGIHVVKGNCDWTAFPERVITTIDGVTIAQTHGHLYAINYGWTRLNYWAEEAGADICLYGHLHVPAADMRDGCLFVNPGSISQPRGLIQERLYAILDIYPDHFHIEYLDRNHQPYPDLTRDIKR
>NZ_LT906439.1|WP_018374431.1|1349935_1350406_-|CBS-domain-containing-protein
MINPHFKEFLRSQEETFLTPAENLAVLIDTHNMDHAKLVLTHMAYSRVPVVTQEGKFVGTIGLTEITRYQLENELSDEDLNQDISSIVKTDVAVVSEFYSLTQVMHDLIDQSFLPVVDQDGFFKGIITRKAILKAINSMLHKFADDYVIEEKDDSH
>NZ_LT906439.1|WP_018374430.1|1349205_1349949_-|site-specific-tyrosine-recombinase-XerD
MTAIDDFLDQKKLAQNSLSAYRYDLEQFRQLVEGEIEPAKLKAYQQFLTDLKPTAQKRKISAVNQFLYYLYETGQIKQFHKLSLPSQVRLVSPRFTSKTEVLDLAILWQKSERPVGQLFALFIWTMGLQPSEILQLEAEHLNLDFQILTVRRGQDKRVLKIPQKLLPYLIELPEVGFLFAKGGKPYSRQWLFNQLRLYLETIGMAHLTAQKLREQYILSQLASDVSLEKVAKNLGLKSAVTLEKYVR
>NZ_LT906439.1|WP_018374429.1|1347910_1348630_-|segregation/condensation-protein-A
MDIKLKDFEGPLDLLLHLVSKYQMDIYDVPITEVIEQYLAYIATLQAMRLEVAGDYMLMASQLMLIKSRKLLPKVVAEAPEEDDPERDLIDQIEEYRKFKLLSQKLSDQHDRRAQYFSKPKQDLVYEDVTLKQDKTSLDIFLAFSQVMTAKQAEFKRSHTTIAADDYKIEDMMSYIETQFSEKIEVRLEEIFQVSQSMNELITMFLATLELIKTQVITAVQEEVFGQVYLRKVSYEPIS
>NZ_LT906439.1|WP_018374428.1|1347282_1347927_-|segregation/condensation-protein-B
MNRLAEIEALLFIAGEEGLSLRQMAEVLELPPTGLSQSLEKLADKYRDDEFSCLALIQSGNKYRLVTKEIHADLLRRFSRTPINQTMSRALLETLSIVAYKQPITRLEVDEIRGVNSSSALSKLVTFELIEVVGHKEAIGRPRLYATTEYFLDFLGINSLEELPEVTALDLSQEESQLFVEREDSPEETEPLAAGELAEPDLPEELGLFESSVD
>NZ_LT906439.1|WP_018374427.1|1346463_1347186_-|rRNA-pseudouridine-synthase
MRINKFIAHAGVASRRKAEELVKQGLVTINGEVVRDLATTVKSGDRVEVEGTPIYNEEKVYYLLNKPRGVISSVSDDKGRQTVVDLLPQVKERIYPVGRLDWDTSGILILTNDGDFTDEMIHPRNEIDKVYVARVKGIANKENLRPLTRGVVVDGKKTKPAVYNILKVDPIKGRSVVQLTIHEGRNHQVKKMFEAVGLPVDKLSRTRFGNLDLTGLRPGEFRRLNKKDISKLHELAVRQK
>NZ_LT906439.1|WP_083903332.1|1346213_1346462_-|membrane-protein-insertion-efficiency-factor-YidD
MKKLLIVLVRWYQRRISPLSPPSCRFRPTCSNYMIEAIEKHGFKGILMGIARIFRCHPFSATGDDPVPDHFSLRRNWNHHKS
>NZ_LT906439.1|WP_018374436.1|1355101_1355395_-|CRISPR-associated-endonuclease-Cas2
MMVLVAYDVNTESAAGRKRLRHVAKLCVDYGQRVQNSVFECSVTPAEFVEIKDRLSKIIDMESDSIRFYLLGKNWQNRVETMGRDDSYDPDIGVLLL
>NZ_LT906439.1|WP_018374437.1|1355405_1356431_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYLTQEDFYLTRERDNIVIKQDGKVLNRFPYRIIDGIVCFSYLGASPSLIELCAENQINLSFHTPQGRFCGRFVGPTNGNVLLRRQHYRLADDVESLDFAKRFMLAKISNSRKYLLRFKRDHRDRVDVKLFEEIDNELVWALENVQVAQDKEMLLGIEGQAANQYFRAFNDMVLSDKETFRFNGRSRRPPLDCLNALMSFGYSLLTYECQSALEAVGLDSYVGFYHTDRPGRAGLALDLVEEFRSFIVDRFVFSLVNRGQLTAKHFEIKENGSVLLTEKGRAVFIENWQKRKHTEVEHPFLKEKVKLMLLPYVQAQLLAKAIRGDLDAYPPFLI
>NZ_LT906439.1|WP_018374438.1|1356427_1357099_-|CRISPR-associated-protein-Cas4
MGYAEDDYLMLSGIQHFQFCKRQWGLIHIEQHWLDNEATAHGQVLHQKADNPYVKEKRKDIITSRAMQVSSKSLGLYGILDVVEFHKHEDGVALKGRRGRWLPTIVEYKRGKPKKDSRDIVQLVAQVICLEETLGCQIDKSYLYYHSVNQKQEIIITPARRQKVADLAAQMHAYYADKRIEKAAYFRNCQLCSLVDICMPRLSKKTPSVSNYIQSALRSEALL
>NZ_LT906439.1|WP_018374439.1|1357100_1357949_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MLEHKIDFMATIEVREANANGDPLSGNMPRTDAKGFGLMSDVSIKRKIRNRMQDMGYPIFVQAGDRIEDEFRSLEKRFSNHFTAKTPDQEVEETANQLWLDVRSFGQVFTYLKKSIGVRGPVSISMAKSLEPIVISSLQITRSTNGMEAKNDSGRSSDTMGTKHFVDYGVYVIKGSINAHFAEKTGFSDADAEVIKEALLSLFENDASSARPEGSMRIREVFWFTHSSKLGNVSSARVFDLLEFNKEQLDKNSYEDYAIRLNQEKLESYQEKGLKVEILEGL
>NZ_LT906439.1|WP_018374440.1|1357952_1359830_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MDFFTSLLKTYDKAEETGWVDNPEKGKTLLLPRYHTSLKSNGKNIIFVQLDQSGNFMRAEFMGAETSIVFPVTPDSVARSGKNPAPHPLVDKLSYYVSEQNESQYQTFHRQLESWIGSSQDKTVKSYLELIQGFIKRADFLDVICRSLFGKEYRRDGLKITTVFDGKEKDTDLSACFLEFAIDNFIGLKTVSVSNYQELHQDYIKVVEAADAEKIRCNISGDLEILATKHRGLLGNAKLISVSNNGEAYKGRFREREDVFTVGNKTSEKIHLMAKFLLEREKTHAWLGSGQHLINWFDSDLVNDSALDITASDFFGDYDEEEDETAAFTVKDDNRNISDSFTRGTKIFQNSSTYNAAILNKTNDGRIALKYFRQLQGSRLLKHLEKWQDSYSWERQLKGGVGYYQKTPSFREIIVAAYGVDRGRYLELDNDSFLSDQYQQLVTALLDGQEIPRALVHKLQENIRQRQKYPKTWYQLQYVSLAVLQKQNRKVFTPMIDQENHDRSYLFGRLLAIYELIETQRYVMDGNSQERITNAERYWTAYTGQPAKMMMLLENKIKPYEEVLKLNRPGLWHKLAKEKEQIMERLMNQFTSRQFNQALEYMFLFGYYAEKRFFYTKQVKTESED
>NZ_LT906439.1|WP_018374441.1|1359829_1360567_-|type-I-C-CRISPR-associated-protein-Cas5
MYRSRNFYLRVTGDRALFTNPATKGGGERSSYAVPTKQALQGIVDSVYHKPTITNVVTEVKVVNQIQTELHGVRALLANYGADLSYVSYLSEVDYLVKFHFIWNEDRPDLIQDRLPNKHEAIMARSIRKGGRRDVFLGTRECLGLVEEISQDDYESASTEYDGQEIDFGVMFHSFAYPKDKSQPLRSFFTRTVMTDGRIHFKPQEDCEIVNTLSSYAFKVSGPVRSVEDEYEAYEVDRVREEGGQ
>NZ_LT906439.1|WP_018374442.1|1360846_1363255_-|CRISPR-associated-helicase/endonuclease-Cas3
MFAHYRLETGESQLLEDHLFLVAEKARSEADAIDQGDALFLIGLFHDLGKADRNFQEKLTRKPNLHVDHSYAGAKYLFAKIRLVLKRQNISKKEFNLFNEIVAYVISAHHGMYDIRFDADNSAFFQFNKLAKRCFGFEEGYHYQPDVEDFASILEKQLPQYGYESLDHLITLAFENFSSIWTKVSYNDDGEKDFYNACVVRLYLSLLKNADILDTINAYETLLTPPNPDETKYLAKAYLKSVEELYAGFADPKTPINRIRNQVATRVQERGTTDGPGIYRLNLPTGAGKTNLSLRYASHQMVLQQKQRFFYVTPYLSVLEQNAQAMKKVIGENGVLEHHSNVVKDKSDQGEEVGEQEELLSAYLLDSWDSPVVLTTMVQFFQTLFKTKSANIRRFSSLIDSIVILDEVQSLPIEVTTLFNLTMNFLSRVMGATVVLCTATQPIYDSKSIAHPIQYGGKNGEKPDIVELSANEQVVFQRTELFKFDEQDEKTSLTDLADSILKQNQSTLIVLNTKKSVGRLYQLLEGQTDRPLYYLSTNMCPQHRLNVIAEVKEGLEAGLPLICVSTQLIEAGVDLDFEQVVRSYAGLDSIVQASGRCNREGKREKGCVTLVNVSKEEENLSRLKAIRDKKKVTEDILHGLSSPIDVSRLNAIYFEKYFANEDARTLSYPVGDNDTVYDYLSSNSYSGPKKGALRQSFKTAGQKMDLIDDESLGVFVFHKDWEEALLNLEDRLAALPTFPELEDLRDIKEDLKKLQLFTVNLRETDELLKATRSYLNGQVLFLQEEYYDDVIGVKKEADSFIF
>NZ_LT906439.1|WP_018374443.1|1363453_1364053_-|HD-domain-containing-protein
MADNYRTPQELLSFFKELEWLKTVKRQNKTFDNGRHENSAEHSWQLAIMSQFLMVYFPEPVNMERVMTMLLLHDVGEIHAGDTSAFDEEGKTTSYEREWLSVQRTFGKLPNDLRQFALEHWQEFELGNSAEARYARVIDALAPLMNHFFIAEENENPSGLTKTQVLARKAFIAEESQPLWELTQYLIDASVKKGLYLDV
>NZ_LT906439.1|WP_026217033.1|1364062_1366051_-|excinuclease-ABC-subunit-B
MIERKTENHFRLVSKYEPSGDQPQAIEQLVDNIEGGEKAQILMGATGTGKTYTMSQVIQRVNKPTLVIAHNKTLAGQLYGEFKEFFPDNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSVNDEIDKLRHSATSALLERNDVIVVASVSCIYGLGSPKEYSDSVVSLRPGQEISRDGLLNALVDIQFERNDIDFQRGRFRVRGDVVEIFPASRDEHAFRVEFFGDEIDRIREIEALTGRVLGEVNHLSIFPATHFMTNADHMEQAISKIQTELEQQLKIFEAEGKLLEAQRLKQRTEYDIEMLREMGYTNGVENYSRHMDGRAEGEPPYTLLDFFPEDFLIMIDESHMTMGQIRGMYNGDRSRKEMLVNYGFRLPSALDNRPLRREEFESHVHQIVYVSATPGDYEIEQTDTIVEQIIRPTGLLDPEVEVRPTHGQIDDLLGEITSRAEKGERTFVTTLTKKMAEDLTDYFKEMGVKVKYMHSDIKTLERTEIIRDLRLGVFDVLIGINLLREGIDVPEVSLVAILDADKEGFLRNERGLIQTIGRAARNSEGHVIMYADNMTQSMQRAIDETARRRAIQMAYNEKHGIVPQTIKKDIRDLIAVTKSVDKDDIKKQSPETMTKKERQAMIKDLEAQMQEAAGLLDFELAAQIRDMVLELRAMG
>NZ_LT906439.1|WP_018374445.1|1366132_1366459_-|putative-heavy-metal-binding-protein
MIITTSQSVDGRQVTAYKGIVFGEVITGINMFKDIGAGLRNIFGGRSGSYEGELTQARETALQEMEARATELGADAVIAVKMDYEVLGADNGMLMVTCSGTAVSLTGY

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Crispr_ID: NZ_LT906439_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906439_2

1436461-1436550

Orphan

Consensus_repeat	Method
GAGTAATCGTTTACTCATTCTTGAAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906439_2

>merge|NZ_LT906439|2|1436461-1436550|CRISPRCasFinder
GAGTAATCGTTTACTCATTCTTGAAAAATTTTTTCGCCTAAAAATTAGGCGATATTTGCGACGAGTAATCGTTTACTCATTCTTGAAAAA

>NZ_LT906439|2|2|1436461-1436550|CRISPRCasFinder
GAGTAATCGTTTACTCATTCTTGAAAAA	TTTTTTCGCCTAAAAATTAGGCGATATTTGCGAC
GAGTAATCGTTTACTCATTCTTGAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906439.1\|WP_018373254.1\|1435305_1435776_-\|ribose-5-phosphate-isomerase-B	unknown	unknown	gnl\|CDD\|235509
NZ_LT906439.1\|WP_018373250.1\|1431086_1431983_+\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_LT906439.1\|WP_018373253.1\|1433929_1435285_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273919
NZ_LT906439.1\|WP_026216905.1\|1428345_1430505_-\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_LT906439.1\|WP_018373259.1\|1439608_1440004_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906439.1\|WP_018373255.1\|1435794_1436445_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
NZ_LT906439.1\|WP_018373260.1\|1440028_1441318_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|237262
NZ_LT906439.1\|WP_018373263.1\|1444093_1444996_-\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_LT906439.1\|WP_018373262.1\|1441641_1443726_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_LT906439.1\|WP_018373257.1\|1438119_1438728_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379324
NZ_LT906439.1\|WP_018373252.1\|1432982_1433918_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376340
NZ_LT906439.1\|WP_018373261.1\|1441333_1441642_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_LT906439.1\|WP_018373246.1\|1426528_1427791_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_LT906439.1\|WP_018373247.1\|1427903_1428359_-\|SprT-family-protein	unknown	unknown	gnl\|CDD\|235290
NZ_LT906439.1\|WP_018373256.1\|1436666_1437674_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_LT906439.1\|WP_018373249.1\|1430942_1431083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906439.1\|WP_018373251.1\|1431982_1432798_+\|TIGR03943-family-protein	unknown	unknown	gnl\|CDD\|226214
NZ_LT906439.1\|WP_018373264.1\|1445123_1445435_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_LT906439.1\|WP_018373258.1\|1438732_1439596_-\|class-II-fructose-bisphosphate-aldolase-family-protein	unknown	unknown	gnl\|CDD\|238477
NZ_LT906439.1\|WP_018373265.1\|1445440_1445752_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906

Protein	Function_ID	Function_description	E-value
NZ_LT906439.1\|WP_018373254.1\|1435305_1435776_-\|ribose-5-phosphate-isomerase-B	gnl\|CDD\|235509	PRK05571, PRK05571, ribose-5-phosphate isomerase B; Provisional.	1.64259e-84
NZ_LT906439.1\|WP_018373250.1\|1431086_1431983_+\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	1.63505e-74
NZ_LT906439.1\|WP_018373253.1\|1433929_1435285_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	5.24774e-147
NZ_LT906439.1\|WP_026216905.1\|1428345_1430505_-\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_LT906439.1\|WP_018373255.1\|1435794_1436445_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	2.32832e-88
NZ_LT906439.1\|WP_018373260.1\|1440028_1441318_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|237262	PRK12997, PRK12997, PTS sugar transporter subunit IIC.	1.47344e-148
NZ_LT906439.1\|WP_018373263.1\|1444093_1444996_-\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.47135e-48
NZ_LT906439.1\|WP_018373262.1\|1441641_1443726_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	2.09542e-29
NZ_LT906439.1\|WP_018373257.1\|1438119_1438728_-\|AAA-family-ATPase	gnl\|CDD\|379324	pfam13671, AAA_33, AAA domain. This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif.	7.46138e-08
NZ_LT906439.1\|WP_018373252.1\|1432982_1433918_-\|hypothetical-protein	gnl\|CDD\|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0.000750557
NZ_LT906439.1\|WP_018373261.1\|1441333_1441642_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.98253e-24
NZ_LT906439.1\|WP_018373246.1\|1426528_1427791_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_LT906439.1\|WP_018373247.1\|1427903_1428359_-\|SprT-family-protein	gnl\|CDD\|235290	PRK04351, PRK04351, SprT family protein.	2.9449e-80
NZ_LT906439.1\|WP_018373256.1\|1436666_1437674_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.15167e-103
NZ_LT906439.1\|WP_018373251.1\|1431982_1432798_+\|TIGR03943-family-protein	gnl\|CDD\|226214	COG3689, COG3689, Predicted membrane protein [Function unknown].	2.63882e-96
NZ_LT906439.1\|WP_018373264.1\|1445123_1445435_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	6.18766e-37
NZ_LT906439.1\|WP_018373258.1\|1438732_1439596_-\|class-II-fructose-bisphosphate-aldolase-family-protein	gnl\|CDD\|238477	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.	1.00963e-116
NZ_LT906439.1\|WP_018373265.1\|1445440_1445752_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	4.28141e-39

>NZ_LT906439.1|WP_018373255.1|1435794_1436445_-|ribulose-phosphate-3-epimerase
MQKLLCPSMMCADFSNLEQEVHNLDEAGFEIFHMDIMDGHFVPNFGMGLQDFELVRKSTKKLVDVHLMIQDPGRYVDQFADLGADIIYVHVEADQQITRTLGRIREKGKKVGIAINPGTSVESIKVLLPLVDYIMVMTVNPGFAGQKYLDFVDTKMDELLTLSTQYGYQLMVDGAISPEKIEKLSRKGVTGFVLGTSALFGKERSYREIYNNLKNL
>NZ_LT906439.1|WP_018373254.1|1435305_1435776_-|ribose-5-phosphate-isomerase-B
MKIAIGSDHVGLELKLTIAEFLKELGYEVDDFGPFSAERTDYPKYGKLVAQSVSSGSNDLGILICGTGVGISIAANKVKGIRAVVCSEPYSAKLSREHNNTNILAFGSRVIGSELAKMIVKEWLSASFEGGRHERRVNEIKAIEEQNLEVFEKLAK
>NZ_LT906439.1|WP_018373253.1|1433929_1435285_-|PTS-transporter-subunit-EIIC
MSKYNTLAKEIVSYVGGEGNIKSLAHCATRLRFRLIDIEKADKESLLNLKGVLNVVESGGQYQVVIGNEVGNVFNAIQELYGISGQKIDTVEKDDLKVRGRFIDSIVDLVTGIFTPVLPILIGGGMIRALLMIGTTFLGLKSTDGFYIVLNEIYNAVYSFLPIYLAYTSAKKFKCNPFIAVVAAVAMVSPVIQSSVQSEEGLEFLGIKMLFPAQGYGSSVIPIILTVYFMAKVEFICEKYIHPVVKNILTPLLVLFITVPLMFIVIGPIANTLQNILGEAYSWLYELSPLISGIVLGGLWQVLVVFGLHWGIIPLGQINLALYGRNTINAITGPSNWAQAGSALGVALRSKDKDIRETAFSAAVTGFFSITEPAIYGINLKYKKPFYIAVMMGALSGGIAGSANAAAIAGGPVGILSFPLFVGEGFVAFIVSMVVAFVGSAILTFLFGYKD
>NZ_LT906439.1|WP_018373252.1|1432982_1433918_-|hypothetical-protein
MSEVVRLINASASDFEGMTPMMLKESILKSEGRVIMGQHLLFASEGLVRGVTNSELMFSFGADMVMLNTFDLDVLDNNIGMQGLSYKELKERCKRPIGVYLGCLTNDLADVGKKQIYRREGMLCTPEHVQLCYEMGVDFIVLGGNPGSGTSLRDVINATRWIKEKYGDRLFVFAGKWEDGITEPVLGDPIANRDDKAIIKELIDAGADCIDLPAPGSRHGISVSMIQELVQYIHSYKPGTLAMTFLNSSVEGADMDTIRMISLMMKETGADIHAIGDGGFSGCATPENIHQMSISIKGKPYTYFRMASVNK
>NZ_LT906439.1|WP_018373251.1|1431982_1432798_+|TIGR03943-family-protein
MLRFLILFGYFQLGIYLYLSGKLDQYINLKYSYLTYISMVISLILAIVQLIVWVKKMKTHSHLTKWSDKVESYGLLIIPLIVGTLFPTVTLDANTVSAKGYSFPLAVENDPATQEQEGTTTQYLRPDTSSFFTKSAYTEEMQKALDKYVSQDHIEVTRENYMEVMEIIYDYPDQFVGKTITFTGFAYQDPDNASNLFLFRFGIIHCIADSGVFGLLLTNVPKQYDNDTWLSATGKITITYHQKLNQSLPTVEIETLTPIEKPDNQYVYRVF
>NZ_LT906439.1|WP_018373250.1|1431086_1431983_+|permease
MFSNLPPSVLQTGAIFMSIMIEALPFVLLGSLISGAIEVYVTPDRVHHYLPKNRFLRILFGTFIGFFFPSCECGIVPIVNRFLEKKVPAYTAIPFLATAPVINPIVLLATFTAFGNSWRFTLLRALGAILVALTLGLLLGFVKHDSIMRPDRKTVHEHDFSQLHGWRKVFQSLIQAIDEFFNTGRYLVFGCLFASIVQVYVPTRVLLSISTNPLMGILLMMLLAFLLSLCSEADAFIAASLLSSFGMAPVMAFLVIGPIIDVKNLIMMTSYFKTKAIAQFIGISSLVVILYTLMIGVL
>NZ_LT906439.1|WP_018373249.1|1430942_1431083_+|hypothetical-protein
MPVTYKKQDEWDKLFEQFASFDDLESVHFPEPEPKSNSDSNFSEED
>NZ_LT906439.1|WP_026216905.1|1428345_1430505_-|RNA-binding-transcriptional-accessory-protein
MDKKYLQMTEALGLSLKQIDTVLTLTAEGNTIPFIARYRKEATGDLDEVAIKAIIDMDKSLTALAERKEVVLAKIASLGKLTDQLRANIEAAEKLADVEELYLPYKEKRRTKATIAREAGLLDLTRLILQNVADLSTQAEKFISEAFPTVEKALSGAVDILAESLAEDTKLRAWTYNEIWTNSSLNASVKDQKADEKEVFQLYYDFSEPVSKLQGYRVLAINRGESLGILKVSFSHNFDKMQRFFLARFKAVNHYIEDAVTDAIKKKIVPAMERRVRSELTETAEDGAIQLFSTNLRNLLLVPPLKGKTVLGFDPAFRTGAKLAVVDATGKLLTTQVIHPVKPASASQIEEAKKELSLLIDQYAVEIIAIGNGTASRESEAFVAEVLPNHPGVSYVIVNESGASVYSASELARHEFPELTVEKRSAISIARRLQDPLAELVKIDPKSIGVGQYQHDVSQKKLSEQLDFVVETVVNQVGVNVNTASPALLSHVAGLNKTISENIVAYREENGEIRSRQELKKVPRLGDKAFEQAAGFLRLPNAENFLDNTGVHPESYPAVQALLEQLEITELDESAQAKLQALDLAVTADSLGLGQATLKDIVADLLKPGRDLRDDFAAPALRQDVLDMKDLKIGQELEGVVRNIVDFGAFVDIGVHEDGLIHISRMVERKRDKKTGRLPQLPHPSTILAVGDIVTVWVTEVDIKRSRIGLSLVKPRELD
>NZ_LT906439.1|WP_018373247.1|1427903_1428359_-|SprT-family-protein
MNLTDYVKQVSLEDFGKAFKHTAHWNKRLRSTGGRFFPKDGHLDFNPKIYEEHGLAIFRQIVRHELCHYHLYFEKKGYRHTDQDFKQLLTQVDGLRYAPALPNRQIYKRYHCQTCGMQYFRKRRINTANYRCGKCRGLLVFDGEMTKDVND
>NZ_LT906439.1|WP_018373246.1|1426528_1427791_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MKKIKITGNRPLSGEITISGAKNSVVALMPAAILADGIVTLDGVPNISDVDSLIAILEIMGVSVTRDGETLTIDPSGLKSMPMPYGKINSLRASYYFYGSLLGRFGTATVGLPGGCDLGPRPIDLHLKAFEAMGAEISYEGDTMTLKAIDGQLYGATIYMDTVSVGATINTILAAVKAKGRTVIENAAREPEIIDVATLLNNMGARIRGAGTDVITIEGVESLSGTRHQVIPDRIEAGTYVALAAAVGQGVRVTNVLYEHLESFIAKLEEMGVRMTVSEDSIFVEEQGTLKAVNVQTSPYPGFATDLQQPLTPLLLKAHGQATIKDTIYEKRIGHVAELARMSADIEVKGDRIAYQGGKRLEGAEVKATDLRAGAALVIAGLMAQGETIISNVEFILRGYSNIIEKLSALGADIQLIEED
>NZ_LT906439.1|WP_018373256.1|1436666_1437674_+|LacI-family-DNA-binding-transcriptional-regulator
MKTYSIKDIAKMAGVSVATVSRVINDNGRFSEETRKKVLKTIEETGYQVDSRAQTLRTNRSYTIGIIVPDITNYFFAKLIEIIEGLLYELNYSTIICNTARDFQKEQSYLKTLSRKGVDGLIIISGADKFNSDIIELKEIPYICIDREPQNPKETVFIGSNHFQGAYDATLKLVSAGSKHPIFLTHTHSSTSSSRRFEGFKAALRDTGISYQKYNHYFEFNDNQNHYEKNLKDFLRANSKIDAIFALNDHIAALTYNVIKQLNIRIPDDIMIIGFDDIPSNIFLTPPLASVVQDIPEIAKISVEKLKSLLNSPKELGKHYKIQTTLAIRESIRKD
>NZ_LT906439.1|WP_018373257.1|1438119_1438728_-|AAA-family-ATPase
MKKYLILLAGPPATGKTYLVNLIREVLPKMYVVSPDEFKEDMAESVGFNSLEEKALLEEKVWFYYYQALNIYMTVGKQFILTEYPFSIKQKGKLKGLAEQHNYEIITIRLTADFETLWNRRRARDLAKDRHLSFIMTHYHYGDVLDNRELADNHISKGDFYNIIEARRYNHFSLGKLYTLDVTDYDKVDYTPLMKALRSLAD
>NZ_LT906439.1|WP_018373258.1|1438732_1439596_-|class-II-fructose-bisphosphate-aldolase-family-protein
MYKTMKEVTDIAERLNMTIGAFNMHNLEMLPDMIRAAEEMGAPIIIQTSIDTAKYIGYSVVVAVVKELANNSLVDVALHLDHARDFGAIKDAIAAGYSSIMFDGSNLPFKENIEKTRLVVEYAHARGVSVEGELGTIGGTEEGISVDEGDKVYTRPEDAIVFVRETGVDALAVGIGTNHGQFKSKTDVQVPLLKEIHSAVDVPLVIHGGTGVKEEDYPELINNGIRKFNVGTELLVNWTQEAKNAFTETAVNKSLRYNVIPANQKVKEIVKNKISLFMNTQESLNNK
>NZ_LT906439.1|WP_018373259.1|1439608_1440004_-|hypothetical-protein
MFSFFKKKEKSNKTEQTQPLLTEEERQDLLAKIEAEREAQSSLESDHDLANSYEKVGIWQAELEEIDEAIKSLEASLDKELSMGDGYKKLMSLYNQKRAQAAKDRDNSAIEHYMNKMDDMRNIAKKLTLSR
>NZ_LT906439.1|WP_018373260.1|1440028_1441318_-|PTS-sugar-transporter-subunit-IIC
MGIVNFIINNILTQAAITIALIAMLGLLLQKKSFGQVLSGTLKTLLGFQVLSAGSSIIVGSLTYFGEIFQKGFHTQGIVPSIEAINGQAMNELGLGSDIALTFLAIFIFNIIFARFTQWKYIFLTGQAILWMATMATVFGYFAGLRGFVLIVVGGIVGGAFAVAMPAIAQPIIRKVTGSNDIALGHFCTIGYLFEAGVAKIFGEKGENKRSIEDIELPKAFDFLQDTYLSVMVVMVPLYIITALFAGPDAVDTGSQQYVMYAFMQSIQFVVGVYVLLSGVRLLLAEIVPAFRGIAMKLVPDAIPALDCPVFFPYSPNAVILGFITTTIGTVIAMLTLPLLGLATILPGMLTNFFAGGTAGIFGNAVGGRRGAIIGGIAHGFFITLLPALLVAAFNQLGFINATATDVDTVVAALLYAWLLSPIFKILSI
>NZ_LT906439.1|WP_018373261.1|1441333_1441642_-|PTS-sugar-transporter-subunit-IIB
MGKRLDILFVCGAGLGSSFAAQMAAEDVLNKYQVDAKLDHVDISTAASVQPDIIITAQNFQKQFATFSIDESKTAIIYLKNIVSSAEIEDKLIPVLKEKNII
>NZ_LT906439.1|WP_018373262.1|1441641_1443726_-|BglG-family-transcription-antiterminator
MKERSTLILNKLLTSKFPIPLKRFETDFSVSARTIRNDIVAINEFLAEKGFPLIFSVRSQGITLHLTVEQECQLKTELEIDDATDFLNRDERHLDMLLDLAFGKEKVFLYKKERFYQISKSTMDEDMRQFRQLLKPYQIDVVSHPKDGLLFKGQESAIRVMLFTIISQELVKSHEHLEGVKSRIINRYLPEKILVKLDGIFDFTISKREASLYRTYFNLFTAIWMLRLTSGHYINEDQGEVVDISLSEWLELYLTQINREFSLSISKIEKNYIAFILKTFNMQEAANPNNWLQLQMLVIQLIHFVEEKTKIPFSQKERQLQKALYNHMIGMAARVKNGIQLTNPLTDRIKHSYGVIYLAVKEFSKQLSQLFQLEIIDDEVAFLTIHFSTALSEINQANYGTYRAVVVCNQGLATGKLLAENLKEFFNIEILAILNSREIDIIQKLDVDLVFSTIEIDYQAKPLLVLDSIIQEDTKVRVQQFLNLHKDKQIITAKSSDFTQLFMDILKIMEEEGPVNKITYEQVQTLFQKNHLRINKREVQPMIEDILTDDKIMICQEKTEWRGAIKYVGNPLKEQDIITDAYIDAMIESVEEYGPYIVIAPGLALAHARPDDGAKQLGLSMAIFEEPVLFESEDQEDQEVCVIFCLSAVDAFSHLNVMKSLVNLMRDTDKIERLSQARDIETVKNILFHSKEEN
>NZ_LT906439.1|WP_018373263.1|1444093_1444996_-|ROK-family-protein
MNHYLSIDVGGTHIKYALFDKSGKLLQKNHCETPQNLEAFLVVVDQLIAAFAEQIRGVAVSCPGKIDTKAGIIYYGGALTYLHELNLSKHIWEKFGLPATVVNDGKAAALAEFWQGNLRGVNHGLALILGTGVGGGIISDGKLLLGQHFQAGELSLMAVPSETLQPLDMLGMNGSAVRMIGRVAEKLGLENRKDGRAVFEAINAKDERVYPIFQDFCRNIAYLIYNVQAVLDMKRVVIGGGISAQSVVLEEIQAQYQSILNGLGPFQFMVTPVDIQVCAFGSEANLIGAIYQLMLMEKSL
>NZ_LT906439.1|WP_018373264.1|1445123_1445435_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MDGLELVAFQIISSVGTARSCYIEAIQEAKNGNFDTAHSLIKEGEENYVTGHHAHAELIQKEANEENIPFSLILMHAEDQLMSAEAFKIIAEEFIEIHQQLQQ
>NZ_LT906439.1|WP_018373265.1|1445440_1445752_-|PTS-sugar-transporter-subunit-IIB
MTKIVLVCSAGMSTSLLMNKMEEYAQTIHLDLDVVAYPIAEVNEKGQDADVVFLGPQVRFNLNKVQQAFPDKPVEAINIQDYGMMNGKNVVKHALELLEKNRG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT906439_1	1.27\|1354890\|33\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1354890-1354922	33	NZ_LT906439.1	1522620-1522652	0	1.0

1. spacer 1.27|1354890|33|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to position: 1522620-1522652, mismatch: 0, identity: 1.0

ttgataagctgggttaattgaacttataaaatc	CRISPR spacer
ttgataagctgggttaattgaacttataaaatc	Protospacer
*********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906439_1	1.21\|1354490\|35\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1354490-1354524	35	MK448932	Streptococcus phage Javan42, complete genome	583-617	3	0.914
NZ_LT906439_1	1.21\|1354490\|35\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1354490-1354524	35	MK448669	Streptococcus phage Javan11, complete genome	583-617	3	0.914
NZ_LT906439_1	1.18\|1354292\|33\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1354292-1354324	33	MK448925	Streptococcus phage Javan386, complete genome	16220-16252	5	0.848
NZ_LT906439_1	1.13\|1353955\|36\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1353955-1353990	36	MK448944	Streptococcus phage Javan452, complete genome	5999-6034	8	0.778
NZ_LT906439_1	1.10\|1353760\|33\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1353760-1353792	33	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	642534-642566	9	0.727
NZ_LT906439_1	1.13\|1353955\|36\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1353955-1353990	36	MK448675	Streptococcus phage Javan129, complete genome	5716-5751	9	0.75
NZ_LT906439_1	1.13\|1353955\|36\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1353955-1353990	36	MK448850	Streptococcus phage Javan132, complete genome	5565-5600	9	0.75
NZ_LT906439_1	1.13\|1353955\|36\|NZ_LT906439\|CRISPRCasFinder,CRT,PILER-CR	1353955-1353990	36	EF116926	Streptococcus phage SMP, complete genome	13439-13474	9	0.75

1. spacer 1.21|1354490|35|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to MK448932 (Streptococcus phage Javan42, complete genome) position: , mismatch: 3, identity: 0.914

gcattgagcgatacctgagagcatatacttggcct	CRISPR spacer
acattgagcaatacctgagagcatatacttagcct	Protospacer
.********.********************.****

2. spacer 1.21|1354490|35|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to MK448669 (Streptococcus phage Javan11, complete genome) position: , mismatch: 3, identity: 0.914

gcattgagcgatacctgagagcatatacttggcct	CRISPR spacer
acattgagcaatacctgagagcatatacttagcct	Protospacer
.********.********************.****

3. spacer 1.18|1354292|33|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to MK448925 (Streptococcus phage Javan386, complete genome) position: , mismatch: 5, identity: 0.848

acaaatcctaatgtatcatcaagatatgtactt---	CRISPR spacer
acaaatcccaatgtgtcatcaagata---acttgaa	Protospacer
********.*****.***********   ****

4. spacer 1.13|1353955|36|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to MK448944 (Streptococcus phage Javan452, complete genome) position: , mismatch: 8, identity: 0.778

gtagcctcctgtgctataatgaagctatcattacgg	CRISPR spacer
tcctcccaccgtgctataataaagctatcattacgg	Protospacer
 .  **. *.**********.***************

5. spacer 1.10|1353760|33|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 9, identity: 0.727

atgacttatcaaataaaaaatatcgtaagaccc	CRISPR spacer
atgtcttatcaattaaaaaatatcaaactaaat	Protospacer
*** ******** ***********. *  *  .

6. spacer 1.13|1353955|36|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to MK448675 (Streptococcus phage Javan129, complete genome) position: , mismatch: 9, identity: 0.75

gtagcctcctgtgctataatgaagctatcattacgg	CRISPR spacer
ttcctcctgcgtgctataataaagctatcattacgg	Protospacer
 *  .*.. .**********.***************

7. spacer 1.13|1353955|36|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to MK448850 (Streptococcus phage Javan132, complete genome) position: , mismatch: 9, identity: 0.75

gtagcctcctgtgctataatgaagctatcattacgg	CRISPR spacer
ttcctcctgcgtgctataataaagctatcattacgg	Protospacer
 *  .*.. .**********.***************

8. spacer 1.13|1353955|36|NZ_LT906439|CRISPRCasFinder,CRT,PILER-CR matches to EF116926 (Streptococcus phage SMP, complete genome) position: , mismatch: 9, identity: 0.75

gtagcctcctgtgctataatgaagctatcattacgg	CRISPR spacer
gttgcctcctgtgctataataaagctgaaaggaggt	Protospacer
** *****************.*****.  *  * *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

224312 : 234583

Streptococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_018373107.1\|224312_226769_+	glycyl radical protein	Q66LZ4	Escherichia_phage	3.6e-09	52.8
WP_018373108.1\|226789_227458_+	fructose-6-phosphate aldolase	A0A0C5AMY8	Cyanophage	2.9e-22	31.5
WP_018373109.1\|227837_228929_+	glycerol dehydrogenase	NA	NA	NA	NA
WP_018373110.1\|229380_230781_+	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	A0A1V0S9I2	Catovirus	2.0e-25	43.5
WP_018373111.1\|230780_231146_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_018373112.1\|231388_232312_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	1.8e-142	81.1
WP_018373113.1\|232593_233223_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	3.8e-72	66.2
WP_018373114.1\|233278_234583_+	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	2.6e-155	63.6

DBSCAN-SWA_2

571173 : 580989

Streptococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026216931.1\|571173_571932_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.3e-23	33.6
WP_018373514.1\|571924_572545_+	ABC transporter permease	NA	NA	NA	NA
WP_018373515.1\|572958_574464_+	phosphomannomutase/phosphoglucomutase	NA	NA	NA	NA
WP_026216932.1\|574683_575703_-	helix-turn-helix domain-containing protein	W6MVG5	Pseudomonas_phage	1.3e-05	30.0
WP_018373517.1\|575951_576503_+	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	7.7e-61	62.9
WP_018373518.1\|576489_576987_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.6e-39	56.1
WP_018373519.1\|576999_577353_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	2.5e-36	61.5
WP_018373520.1\|577523_578876_-	glutathione-disulfide reductase	A0A2K5B2C5	Erysipelothrix_phage	5.5e-36	25.3
WP_018373521.1\|579131_580316_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_018373522.1\|580296_580989_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-37	43.0

DBSCAN-SWA_3

1579763 : 1587192

Streptococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026217015.1\|1579763_1580474_+	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	8.1e-87	68.1
WP_018374292.1\|1580574_1580733_-	hypothetical protein	A0A1X9I670	Streptococcus_phage	7.9e-11	72.7
WP_026217016.1\|1581437_1582676_+	Fic family protein	Q9AZ49	Lactococcus_phage	3.3e-59	33.8
WP_145955191.1\|1582872_1583064_+	hypothetical protein	NA	NA	NA	NA
WP_083903328.1\|1583588_1583837_-\|transposase	transposase	A0A1S5SBP9	Streptococcus_phage	7.0e-14	57.1
WP_145955192.1\|1583939_1584110_-	hypothetical protein	NA	NA	NA	NA
WP_145955193.1\|1584141_1584372_+	hypothetical protein	A0A1B1IMP1	Lactococcus_phage	1.0e-06	42.5
WP_018374299.1\|1584735_1586358_-	chaperonin GroEL	A0A219YK78	uncultured_virus	4.2e-155	56.8
WP_018374300.1\|1586376_1586658_-	co-chaperone GroES	A0A221S465	uncultured_virus	1.4e-10	40.2
WP_018374301.1\|1586796_1587192_-	single-stranded DNA-binding protein	A0A1X9I6R5	Streptococcus_phage	4.1e-24	39.4

DBSCAN-SWA_4

2039131 : 2048726

Streptococcus_phage(85.71%)

integrase

attL 2037055:2037070|attR 2043208:2043223

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2037055:2037070	attL	NA	NA	NA	NA
WP_018374014.1\|2039131_2040301_-\|integrase	site-specific integrase	A0A1X9I6A9	Streptococcus_phage	4.9e-158	70.7
WP_018374013.1\|2040995_2041283_-	hypothetical protein	NA	NA	NA	NA
WP_018374012.1\|2041367_2041793_-	helix-turn-helix transcriptional regulator	A0A1X9I723	Streptococcus_phage	1.5e-16	65.7
WP_018374011.1\|2041949_2042135_+	hypothetical protein	A0A1X9I5U7	Streptococcus_phage	1.1e-06	51.6
WP_018374010.1\|2042147_2042558_+	hypothetical protein	A0A1X9I5V7	Streptococcus_phage	8.9e-30	52.9
WP_018374009.1\|2042979_2043297_+	hypothetical protein	NA	NA	NA	NA
2043208:2043223	attR	NA	NA	NA	NA
WP_018374008.1\|2043286_2043490_+	hypothetical protein	NA	NA	NA	NA
WP_018374006.1\|2043674_2043941_+	helix-turn-helix domain-containing protein	A0A1X9I6M4	Streptococcus_phage	5.4e-12	47.1
WP_018374005.1\|2043952_2044093_+	hypothetical protein	NA	NA	NA	NA
WP_018374004.1\|2044097_2044616_+	hypothetical protein	NA	NA	NA	NA
WP_145955227.1\|2044653_2046330_+	DNA primase	A0A1X9I717	Streptococcus_phage	1.5e-168	55.0
WP_018374002.1\|2046692_2046929_+	hypothetical protein	NA	NA	NA	NA
WP_018374000.1\|2047392_2047560_+	hypothetical protein	NA	NA	NA	NA
WP_018373999.1\|2047718_2048726_+	hypothetical protein	Q4ZE82	Staphylococcus_phage	6.4e-05	25.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906439

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection