CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906442	Legionella waltersii strain NCTC13017 chromosome 1	5 crisprs	csa3,PD-DExK,cas3,DinG,DEDDh,RT,PrimPol	3	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906442_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906442_1

98407-98528

Orphan

Consensus_repeat	Method
TGACTAGCATTTGATTCAAACAGCAAAGAAGGAACCGAGCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906442_1

>merge|NZ_LT906442|1|98407-98528|CRISPRCasFinder
TGACTAGCATTTGATTCAAACAGCAAAGAAGGAACCGAGCCGCGCGCGTCAGCAAGCGGACCGACTCACTCCCTGCTGTGACTAGCATTTGATTCAGACAGCAAAGAAGGAACCGAGCCGCG

>NZ_LT906442|1|1|98407-98528|CRISPRCasFinder
TGACTAGCATTTGATTCAAACAGCAAAGAAGGAACCGAGCCGCG	CGCGTCAGCAAGCGGACCGACTCACTCCCTGCTG
TGACTAGCATTTGATTCAGACAGCAAAGAAGGAACCGAGCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906442.1\|WP_058481012.1\|107904_108918_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_LT906442.1\|WP_133141210.1\|101405_102665_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372382
NZ_LT906442.1\|WP_058480916.1\|90131_90800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_083500089.1\|91828_92524_-\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377460
NZ_LT906442.1\|WP_058480928.1\|102767_104174_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|334815
NZ_LT906442.1\|WP_058480917.1\|90815_91667_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_LT906442.1\|WP_058480930.1\|105045_105798_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_LT906442.1\|WP_058480934.1\|109114_110635_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238064
NZ_LT906442.1\|WP_157066285.1\|92713_92881_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480919.1\|93079_93349_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480920.1\|93497_94382_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|379231
NZ_LT906442.1\|WP_058480926.1\|100549_101284_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270340
NZ_LT906442.1\|WP_058480922.1\|95270_96302_-\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_LT906442.1\|WP_058480925.1\|98703_100446_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_LT906442.1\|WP_058480924.1\|97850_98297_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|227259
NZ_LT906442.1\|WP_058480923.1\|96320_97655_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_LT906442.1\|WP_058480932.1\|106869_107526_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480921.1\|94360_95293_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480929.1\|104374_104947_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480931.1\|105860_106772_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170

Protein	Function_ID	Function_description	E-value
NZ_LT906442.1\|WP_058481012.1\|107904_108918_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	1.15502e-122
NZ_LT906442.1\|WP_133141210.1\|101405_102665_-\|hypothetical-protein	gnl\|CDD\|372382	pfam12919, TcdA_TcdB, TcdA/TcdB catalytic glycosyltransferase domain. This domain represents the N-terminal glycosyltransferase from a set of toxins found in some bacteria. This domain in TcdB glycosylates the host RhoA protein.	0.000346457
NZ_LT906442.1\|WP_083500089.1\|91828_92524_-\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	gnl\|CDD\|377460	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase. Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalyzing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.	1.40371e-10
NZ_LT906442.1\|WP_058480928.1\|102767_104174_-\|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|334815	pfam02113, Peptidase_S13, D-Ala-D-Ala carboxypeptidase 3 (S13) family.	3.31664e-89
NZ_LT906442.1\|WP_058480917.1\|90815_91667_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.7908e-09
NZ_LT906442.1\|WP_058480934.1\|109114_110635_-\|hypothetical-protein	gnl\|CDD\|238064	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).	3.31665e-10
NZ_LT906442.1\|WP_058480920.1\|93497_94382_-\|FUSC-family-protein	gnl\|CDD\|379231	pfam13515, FUSC_2, Fusaric acid resistance protein-like.	4.72033e-16
NZ_LT906442.1\|WP_058480926.1\|100549_101284_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270340	cd13622, PBP2_Arg_3, Substrate binding domain of an arginine 3rd transport system; the type 2 periplasmic binding fold. This subgroup is similar to the HisJ-like family that comprises the periplasmic substrate-binding proteins, including the lysine-, arginine-, ornithine-binding protein (LAO) and the histidine-binding protein (HisJ), which serve as initial receptors for active transport. HisJ and LAO proteins belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.8478e-78
NZ_LT906442.1\|WP_058480922.1\|95270_96302_-\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	4.59037e-49
NZ_LT906442.1\|WP_058480925.1\|98703_100446_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	0.00110805
NZ_LT906442.1\|WP_058480924.1\|97850_98297_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|227259	COG4922, COG4922, Uncharacterized protein conserved in bacteria [Function unknown].	5.11625e-36
NZ_LT906442.1\|WP_058480923.1\|96320_97655_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	2.09785e-35
NZ_LT906442.1\|WP_058480930.1\|105045_105798_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.94056e-27
NZ_LT906442.1\|WP_058480931.1\|105860_106772_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	6.93214e-13

>NZ_LT906442.1|WP_058480924.1|97850_98297_+|nuclear-transport-factor-2-family-protein
MKKVLLSSLSVSLMLYAVSGLAGSSQETNKQIVAQFYQKALNEKNFAAAESYLGAKYIQHNPLAQDGKDGLKNYIAYLKKTYPQSHSEVKRIMADGDYVVVHVNSVLEQGTKGRAIIDIFRLENNKICEHWDVIQPIPAEAANTNGMF
>NZ_LT906442.1|WP_058480923.1|96320_97655_-|TolC-family-protein
MLKKLFSLIVIGISLISCSHRPMATIATPKQFPSIIKEYKPAKELPCLAWWKQFHDSELDRLIEIGLQNNMDIHVALGNLQQAQGELRRVKLSWIPYVQLFGGYSTNPALGVPGGFYGVWPNYALNIMQLFTQQKQAKYQVQYYEAAIDGMRLVLIGQVTASYFTLSAQLEQLRLLTQLDKDLNALIKIGEQDVKIGLNNDIELAQLKSNEQLIAAQIKPVKHNIVVSQNALRYLINENPGPVKTKTQFSQLDFTQFKPGSLPMSVLANRPDMKMAYYALKSARAGVLVSYSDFFPLMQLDDFIGEAHLPNNTFEQATDAYFNWTIKPSSVGKIAASKGAYYAKMAEYIKTVRFILKEVDNAFSANQRMNEQFLSYWKAQKNYESKYKLQDGLVKTGLLSNKELLESKIYLDNLALSTNQAKLELAMSLVLLYQDLAGGYAYNS
>NZ_LT906442.1|WP_058480922.1|95270_96302_-|HlyD-family-secretion-protein
MINWTEYFKELKKRLVRFKREITLTNSIIFLGFLTLLFYLFSYLIPFTDNAFVVNNIRPVAALTSGYITDLYVKNGDVVHKGQKLFTVFKKPYEYSVEQLSADLAGAQAKLAALKTTYERDLKLSENQQNMYIKKSQDDKKFRRGYAIKSVSLITLQNSEQETKAAKDVWEAALKQLEIDNHQITAQENEIKSLNAKLKNAQVNLELTDVYAQGNGIIQNLFFSIGTPVNVNQPLFSLVDQDNIYIQANFNETDLRYVRKGSKVLIFPRMYLSRKRFHGVVDSDYWSANRQLVDSRTQLQNVTNENQWILLPQRLPVMIKVTDPDPNYPLRVGTSAYVYVKTY
>NZ_LT906442.1|WP_058480921.1|94360_95293_-|hypothetical-protein
MFTSRLTRWMDQVDPYAVQRIALYKSLFIATLMVYDYWLFLPTNLIAFFSPFLMIRFYESPALSSFKEKEGFLVFAAVGTILISVSFYLLYPFKVVLFFYSMAALATVYFYVLNNYYQLKNTTMLLLACGPAILNTEPQGNWLVVYDIVISVGIPMIPIIICLRLFPNQYLMVWKRALERFIQCLEQDIEASLSDHRDSMMQEEIAHLGMLRKYRRLVPKKYMLYTHKIANNVRNIQFSLDNLYYEEKNEAFWREIQKSLYFFRGAMKTNSHCHLPEMSVVPRTKLQHYVVNCLRQTCVYWNKLCSKLQH
>NZ_LT906442.1|WP_058480920.1|93497_94382_-|FUSC-family-protein
MQQTSTLRKKLDYARFIHLLIMFMVAMLIFLFSTFPERLWVLITVLSVSAGAEPGLILIRAIHRAGGTILALILLIPLLYLLQLNYRLIPILFIFSLIGLSVSTLNNKRYDISVFFITLFVFFLLAQTNSATSVNGPFEMVLNRSICTVIGIFIVLVGDFFLFNAYRYSHRLYLFHQMMVYNFLNECVQNIMRADAKKLNTFLFVEKLRSQAIEHFLPISTSSENLKLDYKTTLKTKQKVDDFQQTTWEIRRLVFALCISKFVLHSPKTTKQHLLRFNLLMKKARNDFIRYNRH
>NZ_LT906442.1|WP_058480919.1|93079_93349_+|hypothetical-protein
MKRILVILMMSLCFATGYTSKLSKFLNKMDSEQKQRDAQEWQQDMNFGDFMFRLQQRYTDNHGQRCRDYEFRARSNPYKHGYYTICDER
>NZ_LT906442.1|WP_157066285.1|92713_92881_-|hypothetical-protein
MAAGKQAVKDFFSHDTLLSDVPHLLKTGKMRALHEPNATTKPFIDSVNTEVQTGI
>NZ_LT906442.1|WP_083500089.1|91828_92524_-|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein
MIAEQLDIKFDIERIQNYFNTQVKHLEPICQNEMFGGWSIQSTSGDYRDGFQLQNGYHVYDKLSEEYIFDYERAHREIGYTWPKLHVNLTQVGNGYIAEVIETLRKIGLSPHHARWTRIPPNSTTIWHRDTREGSYGVRLHIPVITNPDCWYETEEGKFHMPADGYCYLVDVSRLHMAYNHGKEDRIHIIMDVIDDVGVSKHHRTHELRRKIFHMNKWSIIRVVKKLFYPS
>NZ_LT906442.1|WP_058480917.1|90815_91667_-|GNAT-family-N-acetyltransferase
MYQDKVDNSSTLPRKQSYVLDYPDESDLPDFLYYVRHEDAMAEIYFEEDVEKLDDETIQLFKHNGKLLHKNNTRCDLMLVLRDNGKIIGFIELRLSKNPEMLPQLFSLFMNESYRRKGLSNLMMVYALDFLVHSGQNNMTVSPTAESLTVYNKFGFYPPEFDEDNDALKKWFEKTESERLDDLVDDPSEFLMMDLKNQSCRAAFESHCKKASQYFVKFDISKRLKDDLKTDVFEWRKKAVTPISLSKSGLGVLGAVDGKKKRKVDQIEPDLSQDSEPRPPDSP
>NZ_LT906442.1|WP_058480916.1|90131_90800_+|hypothetical-protein
MTKPIIKTRQSSKSGLGCCYGYSSFWAKGQLHLPVQDVTYEIPLTNAIFDEQSSQIMPMHSKRLASFYIDYWNKKELLDDIKKGLKNVGDAFVIGYLGVIAGHALAIKKIDEDKYQFFDCNVGVYELDGKELDKLFSDYIDPLYQKLFYGLTLEYIPANGLSPDLIENILATAYIVACKLISTPIGVFRYLESLCELIGTLVLSEKLNSNNEQPHEIIIINR
>NZ_LT906442.1|WP_058480925.1|98703_100446_-|tetratricopeptide-repeat-protein
MYSSKQFDSKTSAKAIEFTVEKFIQFWNYVQSNTTLLELFKRYLIQKPYDRVVGQKLIFQLGQVQPNLKELHEFLTTLCKDIDKGGVNLKELIKRETKEVASEQAEVTFIERLDNNVSIREETTPPDFSFMYQTRSQLLLSPTERALARAARPDSEISGLTENTLEREETLRIAAAHLALGNQYATDKDDLLAERSYRKAVELYGSEDSHTAFSAKRNLVLTLIKLKRPEDALVFYGEVKARLARLTSDERTDESWMALDSDLQDDLQSIKDIYLDLGHKYGNVEQNYPLAEKSYRKAIELYENDDLYGACSTKWNLGLIFIKAGKLEEALVLYRDIKTHIERITPEEHAQIKWMDLEALLKKGFLFIADAYMDLGSKKRFEEHDYHLAEKNYRKAVELYGNEDSYHAFSAKRGLGRMLVKLGRLDEAAILEKEVETRVQRLSLAESMQPDWAKWVTHYSANYLNEIETIEAQYIVLFKDYLKENPKKSPSNEAAKEITQLIAVLKAKPQHDSKLTLIGLMASKQDELRKANSNTFWEEESEFSQLMSNLFKVLHCDQSFLAQAKVAFECYQHRQSSLTL
>NZ_LT906442.1|WP_058480926.1|100549_101284_-|transporter-substrate-binding-domain-containing-protein
MRKYRLVLFLITIIAPMLNAYALKLTIGTLSYNPPFEIESEKIHTQQFFGFDIDLMNEICKRIEAECEYKAMFFNQIPEMLNSGQIDLAIASIDITPERSQAFLFSLPYKTSEVQFVTNANSNYHSIEDFKGKNIGVFLNSPVESYVTELFANDVQLKKYNNTLDLLNSLVSQQVDAVVTNTEQAQFWVTNFHEHKLVGKPYPIAVGYGIMSKLNNTDLMDQINEALMSMEKDGTYLQIYNASF
>NZ_LT906442.1|WP_133141210.1|101405_102665_-|hypothetical-protein
MNHVEMMSMYTKQESSKIPIPKKIHFIWIGGPIPEKYLKSILGLAQVAKLSGYELNVWVDNEDNYRKPLNHMHKNLHGSDLAVSNDSLDKVLGIKVRTIEGLKSRMYGDNADSYYKGSDPDFPLQKGEDRAKDFWDCVDRERVGFKNLAAASDFLRIEILRQEGGFYLDADTEFPQINRPTQPNKMEPLPTDPPGTRREIERQNKLAIKQYQKDLKAYEERVAAKKPPPSLQQESSCLGIRGNFELQPYLTDGEHLRIVNVVGCNDVMGTTANHEVTRDAIRIAINSYKEMDKDKTTVVNTMQVKRFPEPVKTTHADATSESPPPDRKSLTVSTSGAAMFTALRNFWRKHNSIETLDTMLSDKKVLGIEFRSKFDNTWLAHGKQKLSSFYKETIERIFPSNSKSERESKGEGTSRRLTD
>NZ_LT906442.1|WP_058480928.1|102767_104174_-|D-alanyl-D-alanine-carboxypeptidase/D-alanyl-D-alanine-endopeptidase
MRLILILSVLLSAITNPVYTQSLSTKIDELIRNEFPYATIGVLIQDAESGQIIYRKNADKLLSPASNMKLFTAAATFYHFPPDYRFLTTLSQLNHDYYIRFSGSPTLTIDDLKGLILTLKEKGVREIKGDFILDVSRFQSPYYPGGTSYDDLGWYYSAPDSAVILNGNAASYQFISGKELGDPVLIKADKEENGLTIINQLRTVDKEEEKNHCGLNIEIKPNNTLRLFGCLAQQKDPKTLQLAIPNPSLLAKSIIKKSLAEQGITLHGTIRTGHLPAQATQIIALQSADLKQVVSHMLLESDNLYASSLMKQLAYSLTKEATYKQGAFAIKQILTQNTHLDMKQLELADGIGTRYNLVSALQIVTLLNDLYQDQKMRDLFLTTLPQSGVSGTLKDRMKKTILEKRVYAKTGTMHDVSSLSGYIIKPEEKSFIFSIIINGINQPIDKAKGLEEKILLAVVNELYVDKLD
>NZ_LT906442.1|WP_058480929.1|104374_104947_+|hypothetical-protein
MNYIVTQQYARGEEKPIAAFNDLNEAMLFLTKKSSKDDEESKKIIYRLFDDQGLRFELNEENISISNAKYADANGDFTYPIPFIFQVMIQTNLGSERTMVAQFNDVNDAKLFVLCQFEFNKTIHDNDLFLIFKGKVLIDSANKTIIANRKKESSGTGSNYTLSPLSTRPTPGGGPADYWVENREDDENSQ
>NZ_LT906442.1|WP_058480930.1|105045_105798_+|helix-turn-helix-transcriptional-regulator
MLTNRIDLRSYRTESCSHAHDFAQFVLPVTGSMELEVGNYSGLVNDDIGVYIAPNDVHCFAGSQNNRFLVIDVNPKNQPHDGHFESATLHLTTSTKKLIQFVHHYLENNERDFFTDSLVNQLVFHFAVNSFSPEQDSLVMKAKQWIDLYFAYSVDVTKVAKHCYLSVSQLQRRFKQAMGCSIAEYWRMRKLHHAKRLLAQRNLSIEAIAFALGYENLPAFSRRFSKVFGTSPSQWRTKALSAKKMHEMDN
>NZ_LT906442.1|WP_058480931.1|105860_106772_+|DMT-family-transporter
MGVEVSKSNSFLQGMLFLILAQTMVGVNIVFSKYVLSSIPILFILALRFSLAAVILLPLHWLSPAKKLPVYSYFSRLKRRDWFFIFAQALSAGVLFNVMILWGLNYTDANVAGIITSALPAIIAVMSWIILGEKISGKKAICVGFATLGLVVIAYEKLNGIKATHSFLGDSLVLVSLLPEATYYLLSKMHGNTLPVFLMSSLLNGINAIALLFCLSFTAWDGLSIQPMDWVILILLGLSSGLFYVFWYFGCQKVDGVLTSLSTAVMPIATVIIAWIILGERLTTGQTVGMGMVLLSIVICANR
>NZ_LT906442.1|WP_058480932.1|106869_107526_-|hypothetical-protein
MTPGKTLIERKNEAKHLMDSLFHAEMKKYPGERTKLKNKLRRIKTRIDHLSAEDWQQAESILLKLDKIVQNSHSWWHGFQEFFRQMKCRDNSYETLRNTLLFSLAFITLFSSLFPRQFCLLLLAYAESEGSSESTLQHIEQECEMINSRSLSENSLFLVNVMLLGVGLIGSLVTYPFLAKKESSILLNNSFFLTLPHPNHAMTSPNNSPKANLFTNEP
>NZ_LT906442.1|WP_058481012.1|107904_108918_+|tRNA-pseudouridine(13)-synthase-TruD
MYSLDWPRVYGKPQSTASFKLVPEDFQVHEITFDQFSGEGEHIVLKIEKRGLTTEEVIKSLARLINKPTKLISYAGLKDRQALTTQWLSIHAPGEIIDGIEQLQAPGWRVLEHNRHNKKLRPGYLVGNQFVIRLKDISDEEDLIQRLEQISKTGVPNYFGEQRFGREGGNLIKAEEMLVQGRKVKDRFLKGVYYSAARSWLFNLILAKRVREHCWNTPLSGDVMQLSGSNSIFGIDEVDDILMQRIQDKDVSPASPLPGKGKSMVKAQALEFIHEVYSDWMPWITGLENHGLEEAWRSNTLYTNQFECTINDKTAELSFSLPPGSYATAVLRELVNY
>NZ_LT906442.1|WP_058480934.1|109114_110635_-|hypothetical-protein
MIEELHKANYLSLEQKNHYLEKIPVELTLEERCDIAANRCDFKEAIAIADIYNQKGVYWAGMAIYWLCKAFEFNPDLQKTFDLDAFFKRFKQLYYPGIFAERYQPLLEVLKRNTTISEVNFGTYFNPDYVNKYLADFLAESNTIKTLDLSTAWNQDNSNVLNDSDMDYIAHALKFNSSIEELILCQQPIGDEGLFILLNGLKDNKNTKLRVLNLAATGLSEIGVAALIEFMQNNVTLECVNIKLSPLFNSTKTEEQYIEQIEKITDRNRQLHLQHQLPNNKVQFNNTDTSTHHETNQNSSPLAQQSFLNTLGERLHVGKNLRSRTDINWFMRFEEICADYADLKALIIHISEYKNDGLRFVIVLEHKKELNIDALSGEGFVFNTHGSGISTNSKKVHFSVNGPGYQNYYFHKNSSVLDITIDGIKVKNQEELDKKLEEAFVEIKLVISQMFTNGIYRFDKKQPCVSWLTSKEATFEYLRKRAENDGSVLLYDQSSFPEHSQELKIN

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Crispr_ID: NZ_LT906442_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906442_2

959249-959358

Orphan

Consensus_repeat	Method
AACCGAGCCGCGCACGTCAGCAAGCGGACCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906442_2

>merge|NZ_LT906442|2|959249-959358|CRISPRCasFinder
AACCGAGCCGCGCACGTCAGCAAGCGGACCGACTCACTCCCTTCTATGACTGGGATTTGATTCAGACAGCAAAGAAGGAACCGAGCCGCGCGCGTCAGCAAGCGGACCGA

>NZ_LT906442|2|2|959249-959358|CRISPRCasFinder
AACCGAGCCGCGCACGTCAGCAAGCGGACCGA	CTCACTCCCTTCTATGACTGGGATTTGATTCAGACAGCAAAGAAGG
AACCGAGCCGCGCGCGTCAGCAAGCGGACCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906442.1\|WP_058481916.1\|970404_970833_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227303
NZ_LT906442.1\|WP_058481377.1\|963303_964263_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133030
NZ_LT906442.1\|WP_058481379.1\|966392_967325_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_LT906442.1\|WP_058480126.1\|944090_945578_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|223903
NZ_LT906442.1\|WP_058480125.1\|945936_946620_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_LT906442.1\|WP_058480217.1\|947919_948378_+\|dUTP-diphosphatase	unknown	unknown	gnl\|CDD\|234802
NZ_LT906442.1\|WP_058481375.1\|961238_962129_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183142
NZ_LT906442.1\|WP_058480218.1\|946696_947902_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_LT906442.1\|WP_058480216.1\|958348_958933_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_LT906442.1\|WP_058480121.1\|956655_958347_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227310
NZ_LT906442.1\|WP_058481380.1\|967290_967920_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319568
NZ_LT906442.1\|WP_083500109.1\|962930_963323_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
NZ_LT906442.1\|WP_058481381.1\|968077_970279_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	unknown	unknown	gnl\|CDD\|273036
NZ_LT906442.1\|WP_058480124.1\|948379_949768_+\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
NZ_LT906442.1\|WP_058481374.1\|959648_961082_+\|cellulase-family-glycosylhydrolase	unknown	unknown	gnl\|CDD\|365907
NZ_LT906442.1\|WP_133141251.1\|964397_966362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058481376.1\|962138_962981_+\|ChbG/HpnK-family-deacetylase	unknown	unknown	gnl\|CDD\|212118
NZ_LT906442.1\|WP_058480219.1\|945667_945889_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480123.1\|950149_956113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480127.1\|943071_943989_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|236971

Protein	Function_ID	Function_description	E-value
NZ_LT906442.1\|WP_058481916.1\|970404_970833_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227303	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion].	1.30913e-27
NZ_LT906442.1\|WP_058481377.1\|963303_964263_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	1.2498e-85
NZ_LT906442.1\|WP_058480124.1\|948379_949768_+\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_LT906442.1\|WP_058480126.1\|944090_945578_-\|amino-acid-permease	gnl\|CDD\|223903	COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism].	1.15667e-179
NZ_LT906442.1\|WP_058480125.1\|945936_946620_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	5.27869e-93
NZ_LT906442.1\|WP_058480217.1\|947919_948378_+\|dUTP-diphosphatase	gnl\|CDD\|234802	PRK00601, dut, dUTP diphosphatase.	2.91468e-91
NZ_LT906442.1\|WP_058481375.1\|961238_962129_+\|EamA-family-transporter	gnl\|CDD\|183142	PRK11453, PRK11453, O-acetylserine/cysteine exporter.	8.45862e-57
NZ_LT906442.1\|WP_058480216.1\|958348_958933_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	3.25932e-107
NZ_LT906442.1\|WP_058480121.1\|956655_958347_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|227310	COG4976, COG4976, Predicted methyltransferase (contains TPR repeat) [General function prediction only].	3.75639e-46
NZ_LT906442.1\|WP_058481380.1\|967290_967920_-\|hypothetical-protein	gnl\|CDD\|319568	cd16654, RING-Ubox_CHIP, U-box domain, a modified RING finger, found in carboxyl terminus of HSP70-interacting protein (CHIP) and similar proteins. CHIP, also known as STIP1 homology and U box-containing protein 1 (STUB1), CLL-associated antigen KW-8, or Antigen NY-CO-7, is a multifunctional protein that functions both as a co-chaperone and an E3 ubiquitin-protein ligase. It couples protein folding and proteasome mediated degradation by interacting with heat shock proteins (e.g. HSC70) and ubiquitinating their misfolded client proteins thereby targeting them for proteasomal degradation. It is also important for cellular differentiation and survival (apoptosis), as well as susceptibility to stress. It targets a wide range of proteins, such as expanded ataxin-1, ataxin-3, huntingtin, and androgen receptor, which play roles in glucocorticoid response, tau degradation, and both p53 and cAMP signaling. CHIP contains an N-terminal tetratricopeptide repeat (TPR) domain responsible for protein-protein interaction, a highly charged middle coiled-coil (CC), and a C-terminal RING-like U-box domain acting as an ubiquitin ligase.	0.000438432
NZ_LT906442.1\|WP_083500109.1\|962930_963323_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	5.45452e-17
NZ_LT906442.1\|WP_058481381.1\|968077_970279_-\|DNA-internalization-related-competence-protein-ComEC/Rec2	gnl\|CDD\|273036	TIGR00361, Recombination_protein_2, DNA internalization-related competence protein ComEC/Rec2. Apparant orthologs are found in 5 species so far (Haemophilus influenzae, Escherichia coli, Bacillus subtilis, Neisseria gonorrhoeae, Streptococcus pneumoniae), of which all but E. coli are model systems for the study of competence for natural transformation. This protein is a predicted multiple membrane-spanning protein likely to be involved in DNA internalization. In a large number of bacterial species not known to exhibit competence, this protein is replaced by a half-length N-terminal homolog of unknown function, modelled by the related model ComEC_N-term. The role for this protein in species that are not naturally transformable is unknown. [Cellular processes, DNA transformation].	2.95822e-100
NZ_LT906442.1\|WP_058480218.1\|946696_947902_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_LT906442.1\|WP_058481374.1\|959648_961082_+\|cellulase-family-glycosylhydrolase	gnl\|CDD\|365907	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5).	8.48463e-08
NZ_LT906442.1\|WP_058481376.1\|962138_962981_+\|ChbG/HpnK-family-deacetylase	gnl\|CDD\|212118	cd10807, YdjC_like_3, uncharacterized YdjC-like family proteins from bacteria. This subfamily contains many hypothetical proteins, and belongs to the YdjC-like family of uncharacterized proteins from bacteria. The YdjC-family is represented by an uncharacterised protein YdjC (also known as ChbG) encoded by the chb (N,N'-diacetylchitobiose, also called [GlcNAc]2) or cel operon in Escherichia coli, which encodes enzymes involved in growth on an N,N'-diacetylchitobiose carbon source. The molecular function of this subfamily is unclear.	1.65416e-96
NZ_LT906442.1\|WP_058481379.1\|966392_967325_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.06969e-08
NZ_LT906442.1\|WP_058480127.1\|943071_943989_-\|SAM-dependent-methyltransferase	gnl\|CDD\|236971	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional.	1.92538e-21

>NZ_LT906442.1|WP_058480216.1|958348_958933_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MKEIILATSNPGKIKELQDLLSPISCISQASLNIQSPEETGLSFVENAILKARHVSLISGKPALADDSGLVVPVLNGEPGIYSARYSGDNANDKRNIDLLLQKLDPISQNQRKAYFYCAIALVMHAKDPTPIIATGQFQGQIAQSPSGQNGFGYDPIFYVSEYQCTVAELPATIKNKISHRAKALSQLRLFLQD
>NZ_LT906442.1|WP_058480121.1|956655_958347_-|tetratricopeptide-repeat-protein
MSKTISALFDEAYKLQYEGQLPQAISLYEQILNLSPKHAESLHFLGLTHAQLGDMDNAILYLRQAMEIDNSNPSLLNNLANAYKKIGQLDEAVQCYKKAIELKPGYAQAHNNLATIYSLRNEYQNALEHYVIAVNTEPDFSSAHFNLGLLLIKNNQLSAAKTQFNNVLSLNSKHLEARFYLGILLLEDNLIDEAEKAFQLVLEADSEHTQALINLGVIALKREQNQLAVHFFTKALALDNDDIDARNNLAATFMHHDRFENALMHYDVLLQKDPQNIEYLYNSGVAQMALGHLNEATLFFDQIIEQQPNHGPSLNNLAAVYLKMEMRETAKEYLERALSVNPNDKISLHMLNAIKGETQADTSEEYAHNLFNNYALYYDQHMQGTLKYSIPQHIARKIHELHLLQIGKALDIGCGTGLSGVVLREVSKHLTGVDIAEKMIERAKEKHLYDRLQCSELIEFLKEDKQTYNLMVAADVLPYFGDLNEVFKQIGAHLDKEGYFIFTTEISPTFSWKLEPSARFSHSKEYIQEMANTYSMRLIQNESIPGRIQNNQAMSIMLYVLKK
>NZ_LT906442.1|WP_058480123.1|950149_956113_+|hypothetical-protein
MTKSGESIDASIKLSEQIANARDKLLKRFQSQMQTTYDGELTPFDSYDEGEPFIGFGSSPPQIAAVKKIINSLYHAEQAVKQWEEWDTSTSIHNALSIEQGAKRVARVYKGVTHVYNSLAFLNDATPEIQALVSRNYALLEPVFANVYALIKENGWESQFSSMDVVSSANTVISQGARYLSKEEGTDPVISFFTNLNDLLTQVVQYQKASSDKEEQRAQLNKLMAQLESNPLTKGVSLQSLQESQSVDSLLSWLKTLRESDFELNESAINKYVSWANQSLSGLIVFTDKLERSNYLQAGILSDPLCQGIDRFSVEVNHHLESSQLESLDKVEMTSSFVSVREQSIHQEQQVHVQNYNQLMGNQEAARDFFNLLENYKGRSLEDIPEHARETLRNLYPKVQEAIAHVNLELDTRLVEVLNQTGPDQLPYQGYVSYFSSFIVSAEVDTIIGKREEVSHFLSQQLLSEDYKLYVAEVACAKLDGNEQNLSIFERVSQRKIEVGNELVSSSDSDEIPRELVAYKASNLKNLRGNFAYLQELGLSKTVHALLVNASTLIRKNLNEQEQSYFTSLPHPIKPDDPDYIQQLKSIENALCNLEFALVAFEGLERNQSYWQTTRSLITLAQAALQVKSSIAVLSPTVRKTLAPILSNISNVGATLSAMNGRENNTTELSSLKDQPIEIVEEASITPEQIDKLHSNRKNAYINLLEVEHHQNSAKQFFETLSRYAERSFAEITPEDAAILRANFSRIQSEWNFVNLDMANELVHVLNRLEQQDSDLPIVSTLQPSAVLAEQTQLDRYILKQHKLAEINFSVTNQELEKGGIAAAHLLTKEYMENEQSLLKIGFEEQIINRKQIGPGELTPAFNLAGDIATARQNVLNLLKSNLSPAITNQLVPNPNPKEVPFIINVDNDPPQLQAIKRFINSMHHAEIAARKWNQIQYNPNSFIDQAIMVKQGLHVVSEMSIAIRELSEIGPEINDLLKNNYDLIAPMMEGASKLITENKWMKFAHGNDRSKIEAFASILGQGVNALNPGLLSSSTSQTLVEFLTSVPRYINTMSTMLDKSAASDTPLVFSPDKLKGMTAFFDLYLENKQSLNNYLHAGNGMIGFVQLYTMFSQERDTFYRTGAIRYQSFLKDNYANVLAFLEEVEVKNYLKPGTLTTPFQQQIEELTQTMNTYFGSKEKEIEEPTFKIPEDIPSQRLGHLRDMRYSYWEKLGHLSIGKTEATCFFEVLSHHKGKVLSDLSKEELKTLREQLFRFQDSLAAVDAQVTNHLITQLNQLENSEAVIPDNPLAIDRLLGLKESLNSHFTHERASTEFKVKVINVAIQSLGSISEDALNVEKMQHEQWQINYKIQLRHAPGPGELTPTPASPVPSLSNYLSSLQEVKLSERLHQLADQFRSAVKASMSDKVIEQLGSPKKQGLYDVQPDSPTIVKEIQLVENAFVRMEQSLLSLESMKKDGNLFAQATVLVALAQDARELSNQFNQIGPELQQQYAAIGSKVQAMCSYVGSLKSQIDSQVPFKEPETPSQKPPGEQQGKKSSGFYQLSSEYMKTVSSKIDQYVAYLDLTYTHLEGNSLSSPEEAVLPTQDINEVLELKDIVQQLSEMLVKLKMKGAESNAKLINQLIEFKKRAYGEALYNLSKLEDELYLKPGTLLDQGVEGINDLFKGVALELDNLPFELKLELADESNYLTLVKERTEQEIGAIKKNLEQSPEDKNLLLQLDLKKDKIDYLDGKLKNAPKGDIRKSELLDAQFNVLIKRAVSEYQFNTPEIKIEYERAFKVFYQANKNELLAKDAKHIDQALGQMIEQFKQENNANYFLVDKTIKKLMAFQRLLPGEEKQNKDIKNYINKQLLFLIGTNEDGQLGISSITDRVQFIKELPKNSEFKENIYSVNTGSNFFNEINVLLKTFKFIVEKGVKSFSEISTIYHENKIKEIVHSLIKNDPEQNNESQEQHNIDRTKSLREEMASHRPLPSQSDLEAPKSIATKGN
>NZ_LT906442.1|WP_058480124.1|948379_949768_+|phosphomannomutase/phosphoglucomutase
MTYQQTTVSPSVFRAYDIRGVVSKELNEDAYFSIGLAVACFLRQLNRQQIFLARDGRLTSPALATALKAGLVESGIEVFDLGAVATPVMYYATSTQGIDSGLMVTGSHNPADYNGIKMVLAGKTLTQNEIDILYRFHKSGERITGSGSDISKNVIPEYMNRIESDIKLKRPFKVVVDCGNGIAGTVIPEVIAHLGCEVIPLYCDVDGRFPNHHPDPSIETNLTDLKAAVATHKADIGLGFDGDADRLGLITDKGEMIWPDRLMMFYSRNLLRQNPGATIVFDVKCSSHLEQEIVASGGVAKMCPTGHSIVKSVMKQEKAILAGEMSGHLFFKDRWYGFDDALYSACRLLELLSESDLSVSEQFKLIPNSINTPEIKIAIEDDSKFEFIKQFSQLARFTDAKIITIDGLRVEFANGWGLLRASNTTPCLVARFEATDNDNLEKIKSIFKQQIQLINAELDVPF
>NZ_LT906442.1|WP_058480217.1|947919_948378_+|dUTP-diphosphatase
MQQVIQLKILDSRVGDTIPLPTYATDGAAGLDLRVCVSDAIQIAPQETVLLPTGISIYIADPQLAAVILPRSGLGHKHGIVLGNLVGLIDSDYQGELKISCWNRGHDVFTVNPGERIAQLVFVPVVQAAFEVVQEFQQSERGEGGFGSSGRQ
>NZ_LT906442.1|WP_058480218.1|946696_947902_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MQDFVNKKILLGVCGGVAAYKSVYLLRELTALGAEVRVVMTQSAQEFITPLMMQAISGNEVRTDLFDTQAERAMGHIELARWADYLLIAPATANCLAKMAQGIADDLLSTLYLVAEVPVIVCPAMNRSMWAHPATRANCELLQERGVIFVGPEEGAQACGEHGLGRVSESQQIINTLRLLDVNQLLTGKKVVITAGPTREAIDPVRYLSNYSSGKMGFAMAEACAMAGAQVTLISGPCDLETFSQIELIRVESAQSMYEEVKKHVCKGDIFIAAAAVADYRAHSPSPEKMKKKERNELTIDLVKNRDILASVSEQGKASFVVGFAAETNDVITYAKDKLQAKKLDMIVANKVGKGLGFERDENQVTVITKNKQIELPLTQKTRLAGQIIAIIASTLQNGAL
>NZ_LT906442.1|WP_058480125.1|945936_946620_-|DNA-repair-protein-RadC
MTVVQSTRQLDLREKLLIHGVASLSDSELLAVFISSGNKQRTCLELANDLMNQYSDLRALLNSDLNQFQLIPGLGIVRYTQLQAVKEMCRRSDFIQLKRDSAINNSRQTYSFLKRRLRDNKHETFAALYLDNQHRVIAYEELFSGTINSASVHSRPIVERVLQLNAAALILAHNHPSGVSDASQQDIEVTARIKQALELIDARLLDHIVIGDNEVYSIIAEHKWACN
>NZ_LT906442.1|WP_058480219.1|945667_945889_-|hypothetical-protein
MFQLFVPDFIKNKTIQFFLFVGILSDIYLASSLKHVLFIFGFPYLTAVLLYYLMNRKKPLVKAMVSAQYKRKN
>NZ_LT906442.1|WP_058480126.1|944090_945578_-|amino-acid-permease
MSQAQSSPELHKNLDARLLTMMTLGGSIGTGIFLASGSVLAKAGPGGILVAYLLMGVLVYFLMNSLGEMAAYMPTSGSFYQYAADFVDPSLGYALGWNYWYSWAISIAAEIAASAVLMRFWFPDSPHWIWTGSFLILILGFNAFSTKLFGEIEYWLSLIKVTVIILFIVIGFAMIFGLTSHHSVGLKNWSLGDAPFHDGCFGIFSAFMLAGFSFQGTEMIGIAAGESKDPGTTIPRVIKMVFWRIFIFFFLTMLIIAFLIPYTSAEYLDQNISMSPFTKAFALINHTYAPSFMNAIILIALLSTANSGLYASSRMLWFLAKEKHVPSVFSSITKRGIPIWALLATVSISFFVFITSLFSPKTIYLWLVNAGSLAGFIAWMGISVSHYKFRKQYIKNGNDLRKLPFLAKGFPYAPIGVFISCILMLIAYNIVAYIHYNLTWQELCISYLGLPLFFFVWFGKKYSLLSSIGSLRGAAPINSVLNTSTVPQNQSAEST
>NZ_LT906442.1|WP_058480127.1|943071_943989_-|SAM-dependent-methyltransferase
MFSIQHTATIYRGKPEFLKELCEEMSESSLIIEDLVFSPLKKEDLCFALDVWLEPQMVHFESISQAVKILRQAGKFWYLHPIKHIRRSKLIEEQLRKVPSLTRAFPVIEEIPKLGVFSLLDQNTLVYSAHRSKQWPDGNCFFTEDKITPPNRAYLKLWEALFLLNQYPKPDETVLDLGASPGGWTYVMQSFGAHVTSVDKAELAPKIMALPNISFRQQSAFALEPEKLSKPYDWVLSDIACYPDRAYSLITRWINSGKAKRLIFTIKLQGQTNMNIIRQLKEIPNSRVQHLFYNKHEVTFFYPSH
>NZ_LT906442.1|WP_058481374.1|959648_961082_+|cellulase-family-glycosylhydrolase
MTLIKQLSLSFLIFMSLDANAYMTRNGQIYDDRGNPVIINGLSWSGFQDTNVFQGLQSNPFYSLKTGSNTDKAGLLDLLTHPWDYADSGVDKQSAVQFKTIRLPIQPDVLYDDEHQVDLNKGLSNKLQPTTGNGVFCKTWQVNGNGCEQAVSPKQAFWVVLEEMKKNNIKVMIDIHHRNGYGDGMRDGTVYDMHQYEKDLTLLASEIKNRQLDNVIGIDVFNEPYQLSWFKGRNGQVAWMKVIATAANAVHQANPELLLFVEGPGGGNDDLDNPVICVPRSQIQDDPNGYAHWKDQSACGDSQDVVLFKGNWGEDFKPLLNKDLAKKGQAVFDVQYFANALVQQEPKINSATMDWFLGDDRAGNNGHLVFSPHVYPKEVAGWETAPGNPSNLRFDWSWGFLYQSGYPVVLGEASWKTSQGKQFFINALMPYLLHSGISPHNLYFWAIGYLGDTVSVINPNTGRLDSGVQQTLAPYFN
>NZ_LT906442.1|WP_058481375.1|961238_962129_+|EamA-family-transporter
MPITHLLLALVVVFAWGINFIFVKLGLDEISPLLLCALRFLLSSFPAVLFIKPPKAPFGIVASYGLIMFALQFSLVFIGLNVGMTPGMASLLMQVQVFFSMFFAVIFLGEQPNFGQIIGALVAFVGIGIVAMHFDHNVTLLGFLCIIGAAATWGIGNLITKKMKSTNFIAVIVWGSFVACLPMFVISLIFEGPSNFVETYQGITWKGVISLLYTVYISTWVGYGVWNWLIARHPVSTVVPYTLMVPVVGMLSSVLFLGEQFYLWKLVSGLLVISGLCINLLATRFFAVKKQEPETA
>NZ_LT906442.1|WP_058481376.1|962138_962981_+|ChbG/HpnK-family-deacetylase
MTYPKNILLCADDFGLSEGVSQGIIQLVQLQRISVASCMANSPYFAEQSKYLSNLHDHAKFGLHFNLTEGAFLSASTSIGYSLQTLLFKAHARMLDVQFIAKELRAQFECYVDLVGKFPSFIDGHQHVHQFPQIREVLLQFYEEKLKGSGVYIRSTYPAVNLAKYSLKTKVLAFTGGKILQSKLKKGFIPHNQCFAGIYDFSEQANYRNLFRQWLAAAPDDTLIMCHPAQDSSGVVEHATTRKHEFDYFTSDDFLNDCAEFQIQLSTRPKSRNNEVVHSN
>NZ_LT906442.1|WP_083500109.1|962930_963323_-|GtrA-family-protein
MTTASLKLSHRLFYYIIIGTSAAAVNILIVGLLVHFISISPLLANVLGFLIAFNVSYLGHKRYTFSNLDDQKELKLMHFFIVAASAGLLNEALYYLFLEYTSIHYLVSLTLVLVLVAVYNFVVSRFWACR
>NZ_LT906442.1|WP_058481377.1|963303_964263_-|glycosyltransferase-family-2-protein
MKNLSKQKKLISCVVPIFNEENLISEFIAALDKTLQELSYPYEILLIDDGSQDNTCTIIQNIRKQYTLRYVRFSRNFGKEKALSAGLEMAKGDAVILIDSDFQHPLELIKEFIIQWENGYDMVYAVRTSRSNESWLKRNCAKLFYQFASKINRINIPANAGDYRLLDRKIVNALLTLPERNRFMKGLYGWVGFKEIAIPFEVQPRKGGTSQWNFYSLLDLAITGITSFTAFPLRMIALGGICISSIALLYAAWIVCSTLLFGVQTPGWATIVTAISFFGGVQLFAIGVVGEYIGRVFDEVKNRPLYIVDEVASFDDSKS
>NZ_LT906442.1|WP_133141251.1|964397_966362_+|hypothetical-protein
MYQPYLETELEGLDSSKGSKNSAHEIHKVKCSMGKEKVRAFYKKNKNNEPLLSINEAAFSELARMLMPKSITPRHFLVQKAARGPITGVISQDIGSIINERDSIESTQFLAVDPITGTFKEVAITENSDIPYVFFHKLPHGYFYTLMRLREEGVVSIDMDSLASVLAVKYKLEEDDLHKGNFGFYVIKRVGKPPLIKFFTIDHDMLLANSVTSFIHFRLPNFSYTDTSFNITPEDLIRFPDLHDSKNHYWPTRKRLLVMTGDPKVYTNSEEMEAFKRLNTDPEFNHAKWKRFLKGILATDEMTRAALSLHLNKRNPKDLAKIQLISHAMNERIMQLRANLLSIPEFRNYINSGQGKADILDMIREFEEYITDVQDHFDLDPEQTKEGFQNELLDGIKELAKISSHSCDPDDKRAVKDGDTPLHIAIRIGQYRFEESEKAYSKYWSIPNSENKTAIEVAMDMAETCDAHCNRDVPALDPFAVIQDLLNRGAQRTPELDRLLERKGINIDTYFFNSKYYDEPVETYDDLKEIIAAIGNDSNLSLKTKKTIVIDVVRKNLNQLSSDDCARLRAELNGTSETSIAPEFLFISQLRSSLWIIRWIRGVYGMSSTRYELNSILDNRELQLGMEFCMAFFKPSMPARRDNNRETPTPIFSQ
>NZ_LT906442.1|WP_058481379.1|966392_967325_-|class-I-SAM-dependent-methyltransferase
MLIQDQIISHNDRTMDLEDSILQIQTRILQEGNKPHVSVEEQFALLQQLSEFEFGRFLINNQGINGYWTHYMLTHPWVGRKTGLNNQGQAFTDLERFLLDQAPTMIATQQRFKLFLKENQKSVNDGAVLASIPSGLMGELLYLDLKQVNNLQLVGIDFDVNTLKEASALAEKLKIRQNIEFMHLNAWALPMRDQFDLISSNGLNIYEPEDEKVTDLYRQFYKSLRPGGKLVTSFLTHPPMSTEECEWVLDKVNKDHLLLQRIIFVDLLNAKFRCFRSTKQTQKQLESVGFNGIQFLYDEAHIFPTVIAMK
>NZ_LT906442.1|WP_058481380.1|967290_967920_-|hypothetical-protein
MGKIVYLLDDRNKTLYDEDSVPKHMKTREPDAATLLRLLENRLNLLGVTNIDWLYCAITIEPIRNPVFYPNKEGITVLYEKSKLNEWLNKKGGIGLDPTALSQKAKLTDYLVPTSEQLLDFVVKSSSIAREFFVDQYHDFKPEETQSVKEPLLPNSDLEKRSSHVERITPKRSRAALLFRSIFCCISPNSEQTKEKEPHAHPRPNYFPQ
>NZ_LT906442.1|WP_058481381.1|968077_970279_-|DNA-internalization-related-competence-protein-ComEC/Rec2
MEIVCFYLGILFVYTQEIYLIPALLLLYFLTPKYRLILYFLGACSVAWIHECIVFPKGLPEKQVIPYAIIEGIISSIPNQNTHKTQFHLSLQKFNDQAAKGVILLSWYNHPPKLKAGQTWRLKVKLKKPRNFKNPGSYNYTLFLSARHIHWTGYILPKGSQLLSTTSNELSLLPLRERLANSIASLAHDKQIAAILEALTLNIATHIAPETWELFRRTGTIHLFGISGEHIAFIAGILFYCCRWIWSRFPACCLCIPARSFAGVCSLIVAFMYSLLAGFEPPVQRALSGYFFFTLGCVGSQRFTPWQIWRYALFVVLCIDPHAVFMQGFYFSFGAVACLLITHQRWQLKGYQLKLALQLSCLIGLLPLSFFWYGYGSINGFIANLFAIPLVGFLIVPLALMTLLFSSQSWSWILMKPLSLLVSLLLKGLALTEYLSTLNINWSIQTAPMMLSLLFGIMMLAILPTKPFKHIAILWIVIPLFPHQDSIKSGEALVNVLDVGQGLSVVIRTQNHVLVYDTGDQFFQGSDLGKMVVLPFLNSKGIKSIDAVVISHPDKDHMGGLGSIEQSLPVDRLIVDDPDYYNRGLNCHTFHEWRWDKVTFKFFPIHEVLGKKNNHSCVLRVSNSVSSILLTGDIEAVAEDYLVRTYSNQLNSEVFIVPHHGSSTSSSYRFLLDVNPRYAIASLGFDNRFHFPHDKTTLKLKSLNIPFIRTDESGMVQIKLPKNGHLYPPEVYS
>NZ_LT906442.1|WP_058481916.1|970404_970833_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKKQNINRELGFSLIELMIAMVILGILTAIAYPSYKQYIMESRRSDALSTLTQDQIIFERCYSQNFSYAAACGAIPVFPQTSPQGYYRITATNVTPTTYTLTATPLGTQVEDTDCVSMSINQANVKTALDSSAASQPKCWNP

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Crispr_ID: NZ_LT906442_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906442_3

2045871-2045966

Orphan

Consensus_repeat	Method
ACTCACTCCCTGCTGAACTAAGATTTGATTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906442_3

>merge|NZ_LT906442|3|2045871-2045966|CRISPRCasFinder
ACTCACTCCCTGCTGAACTAAGATTTGATTCAGACAGCAAAAAAGAAACCGAGCAAGCGGACCAACTCACTCCCTGCTGAACTAAGATTTGATTCA

>NZ_LT906442|3|3|2045871-2045966|CRISPRCasFinder
ACTCACTCCCTGCTGAACTAAGATTTGATTCA	GACAGCAAAAAAGAAACCGAGCAAGCGGACCA
ACTCACTCCCTGCTGAACTAAGATTTGATTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906442.1\|WP_058480508.1\|2054509_2058331_-\|TIGR02099-family-protein	unknown	unknown	gnl\|CDD\|273971
NZ_LT906442.1\|WP_058480505.1\|2060123_2060774_-\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|307978
NZ_LT906442.1\|WP_083500075.1\|2042152_2043319_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_LT906442.1\|WP_058480511.1\|2050940_2052212_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480507.1\|2058308_2058782_-\|flagellar-export-protein-FliJ	unknown	unknown	gnl\|CDD\|376722
NZ_LT906442.1\|WP_058480575.1\|2049907_2050693_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480515.1\|2043315_2044065_-\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	unknown	unknown	gnl\|CDD\|223639
NZ_LT906442.1\|WP_058480517.1\|2041396_2041768_-\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|223393
NZ_LT906442.1\|WP_058480516.1\|2041742_2042156_-\|iron-sulfur-cluster-assembly-scaffold-protein	unknown	unknown	gnl\|CDD\|188192
NZ_LT906442.1\|WP_058480513.1\|2046240_2047185_-\|S49-family-peptidase	unknown	unknown	gnl\|CDD\|132934
NZ_LT906442.1\|WP_058480519.1\|2038527_2039967_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	unknown	unknown	gnl\|CDD\|235489
NZ_LT906442.1\|WP_058480512.1\|2047272_2049849_+\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_LT906442.1\|WP_058480514.1\|2044305_2045094_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_LT906442.1\|WP_058480518.1\|2040613_2040904_-\|Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179020
NZ_LT906442.1\|WP_058480577.1\|2026147_2036710_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|238429
NZ_LT906442.1\|WP_058480510.1\|2052224_2052833_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480506.1\|2058778_2060131_-\|flagellar-protein-export-ATPase-FliI	unknown	unknown	gnl\|CDD\|274607
NZ_LT906442.1\|WP_058480521.1\|2036770_2037067_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	unknown	unknown	gnl\|CDD\|178810
NZ_LT906442.1\|WP_058480509.1\|2053131_2054496_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|130153
NZ_LT906442.1\|WP_058480520.1\|2037069_2038524_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	unknown	unknown	gnl\|CDD\|234572

Protein	Function_ID	Function_description	E-value
NZ_LT906442.1\|WP_058480508.1\|2054509_2058331_-\|TIGR02099-family-protein	gnl\|CDD\|273971	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein. This model describes a family of long proteins, over 1250 amino acids in length and present in the Proteobacteria. The degree of sequence similarity is low between sequences from different genera. Apparent membrane-spanning regions at the N-terminus and C-terminus suggest the protein is inserted into (or exported through) the membrane. [Hypothetical proteins, Conserved].	4.82967e-162
NZ_LT906442.1\|WP_058480505.1\|2060123_2060774_-\|flagellar-assembly-protein-FliH	gnl\|CDD\|307978	pfam02108, FliH, Flagellar assembly protein FliH.	1.13514e-22
NZ_LT906442.1\|WP_083500075.1\|2042152_2043319_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_LT906442.1\|WP_058480507.1\|2058308_2058782_-\|flagellar-export-protein-FliJ	gnl\|CDD\|376722	pfam02050, FliJ, Flagellar FliJ protein.	7.89518e-13
NZ_LT906442.1\|WP_058480515.1\|2043315_2044065_-\|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	1.16806e-99
NZ_LT906442.1\|WP_058480517.1\|2041396_2041768_-\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	6.39531e-36
NZ_LT906442.1\|WP_058480516.1\|2041742_2042156_-\|iron-sulfur-cluster-assembly-scaffold-protein	gnl\|CDD\|188192	TIGR01999, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, FeS cluster assembly scaffold IscU. This model represents IscU, a homolog of the N-terminal region of NifU, an Fe-S cluster assembly protein found mostly in nitrogen-fixing bacteria. IscU is considered part of the IscSUA-hscAB-fdx system of Fe-S assembly, whereas NifU is found in nitrogenase-containing (nitrogen-fixing) species. A NifU-type protein is also found in Helicobacter and Campylobacter. IscU and NifU are considered scaffold proteins on which Fe-S clusters are assembled before transfer to apoproteins. This model excludes true NifU proteins as in Klebsiella pneumoniae and Anabaena sp. as well as archaeal homologs. It includes largely proteobacterial and eukaryotic forms. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0.000103632
NZ_LT906442.1\|WP_058480513.1\|2046240_2047185_-\|S49-family-peptidase	gnl\|CDD\|132934	cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain.	8.89539e-74
NZ_LT906442.1\|WP_058480519.1\|2038527_2039967_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
NZ_LT906442.1\|WP_058480512.1\|2047272_2049849_+\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_LT906442.1\|WP_058480514.1\|2044305_2045094_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	8.81433e-120
NZ_LT906442.1\|WP_058480518.1\|2040613_2040904_-\|Fis-family-transcriptional-regulator	gnl\|CDD\|179020	PRK00430, fis, DNA-binding transcriptional regulator Fis.	5.58615e-18
NZ_LT906442.1\|WP_058480577.1\|2026147_2036710_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|238429	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.	0
NZ_LT906442.1\|WP_058480506.1\|2058778_2060131_-\|flagellar-protein-export-ATPase-FliI	gnl\|CDD\|274607	TIGR03496, FliI_clade1, flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. [Cellular processes, Chemotaxis and motility].	0
NZ_LT906442.1\|WP_058480521.1\|2036770_2037067_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	3.96774e-23
NZ_LT906442.1\|WP_058480509.1\|2053131_2054496_-\|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase	gnl\|CDD\|130153	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_LT906442.1\|WP_058480520.1\|2037069_2038524_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0

>NZ_LT906442.1|WP_058480514.1|2044305_2045094_+|inositol-monophosphatase
MEPLLNIAVSAARQAGEIINRYVDQIDRLKITPKNSLEFFSEVDIKAEQAIISTIHKAYPQHGILAEESGTQNDESDSVWIIDPLDGTSNYIHGFPFFSVSIALKVKNRLEHGVIYDPIRHECFAASRGRGARLNDRRIRVSKQTQLSDSLLATGFHFKSVQLAQRYLPTFEALFGKCAGVRRTGSAALDLAYVASGRIDGFWELGLRPWDIAAGALIIREAGGLISDAQGGEEFLSLGDVVAGTPKVFKSLLQTISPVLSK
>NZ_LT906442.1|WP_058480515.1|2043315_2044065_-|tRNA-(cytosine(32)/uridine(32)-2'-O)-methyltransferase-TrmJ
MNLESIRIVLVATSHPGNIGSTARAMKTMGLNKLYLVTPKSFPDLRAKEMAAGADDLLESAVVTSSLDEALAGCQLILGTSARPRGLSLPGLLPKDCAQLISQQTQSTQVAIVFGREHAGLTNEELLKCHYHINIPSNPEYSSLNLAQAVQIIAYELRMKLLAPSAEVSLRNEELATADEIEQFYAHLQQVFIDIQFLKLANPRRLMQRVRRLFNRMILEKMEVSILRGMLSQVQKSLHWARDGKRSNS
>NZ_LT906442.1|WP_083500075.1|2042152_2043319_-|IscS-subfamily-cysteine-desulfurase
MSSKSIYFDYMATTPVDPRVIKEMLKYLGPDGVYGNPASVTHDYGKEAAKAVENARSQIAEVLHASPRELVFTSGATEADNLAIIGAARFYKNKGKHLISMSTEHKAVLDSFHYLEKEGFEVTYLQPDSKGILDIKSLEQALRKDTILVSVMHVNNEIGVIQDIETIADLLRNKGIVFHVDAAQSAGKLEINLEKTPVHLMSFSAHKLYGPKGVGALFVRNKPRIRLQALTHGGGHEGGLRSGTLPTHQIVGMGEAFALADLERLSEQERILSYRKRIWEAIQQIPNVRLNGHEQQRVAGNLNISFTGLDGDAILLALHQLAISTSSACTSASIQPSYVLRAIGLSEQEAQSSIRLSLGRFTTEAQVEEAIAIICTQIKRLQTISPLT
>NZ_LT906442.1|WP_058480516.1|2041742_2042156_-|iron-sulfur-cluster-assembly-scaffold-protein
MMYNDIVQDCFFNPLHVGTLDLKNPFVVGLQREQLGQQNCVSFFVQCSAKGVILQASFKCNGNPYMIAALEWICRQSEGKQLDGISKFSHDELIKLFEIPTKYYPAAIYIEGICKEIQNLMMKKLWGKSNECRSSRS
>NZ_LT906442.1|WP_058480517.1|2041396_2041768_-|iron-sulfur-cluster-assembly-accessory-protein
MSVEVQEANSIESNITFSDTAVKHIVSYLSKSKEYQGIRLSVKKTGCSGMSYVVDYVSLPKDGDINSPLTGEYRVYVDKLSYPFIKNMHVDYVKQGLNYKFIFNNPNQTGQCGCGESFTVEER
>NZ_LT906442.1|WP_058480518.1|2040613_2040904_-|Fis-family-transcriptional-regulator
MNAVMQQVVQGTDALTHQVISAVKGYLTNVSGGKDANLNLYQLIVEEVEAPLFRTVMELTRYNQSKAARVLGVSRGTLRTKLKRYFDDEFIGTRDF
>NZ_LT906442.1|WP_058480519.1|2038527_2039967_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatB
MDWDTVIGLEVHAQLKTKSKLFSGSSTAFGASPNSQTSYIDAGLPGVLPVLNQNAITMAIQFGLAIHAEINDLSVFERKNYFYPDLPKGYQISQYQKPIVSNGYLNIHLGSNAEKKRVDILRAHLEEDAGKSIHDNHSQFSSIDLNRAGTPLLEIVTTPCLYSIEEAIGYLKSLHQLVRFLGICDGNMQEGSFRCDVNLSIKPKNSAKLGTRVELKNLNSFRFIEKAISYEQARQQDLLESGKQVTQETRLYNPDTNTTHSMRSKENENDYRYFPDPDLLPIHITKEQIEIIRDKMPALPDEIHNELKSVPALNEEDILFLLSFPDAYHFYKRVKEHSNAPDKLMINWLKGQFSANLNEANLSFDDSPIEPQTMAKFFDKISDNTMSSSIAKIVFPFLWKGEKDVDAILKREGYQQNQNDSELDGIIQRIISQHPEQVAEYKAGKEKLLAFFVGQVMKQTKGKASPENINERLRMQLSE
>NZ_LT906442.1|WP_058480520.1|2037069_2038524_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatA
MQFSSLIQLAKALQQRKVSSLELTKHCINQIQKHSDLNAFISVDEENALAEAKSADEILNKNLGKPLTGIPMAIKDLFCTKRLNTTCASKMLSNFQAPYEATIVTQLKNHGAIALGKTNMDEFAMGSSNENSYYGPVKNPWDKQRVPGGSSGGSAAAVAAEIVPFAIGSDTGGSIRQPAAFCGISGIKPTYGLVSRYGMVAYASSLDQAGPFARSAEDLALILQCMSGFDPKDSTSAKNAVPDYVNQLNSLPSKLRIGLPSCFFQPEVDKSVQKSIHEAVKLFESLGAEIIEIDLKLQALWVPCYYVVACAEASSNLSRYDGIRFGHRSKKQSNLIELITASRSEGFGAEVKRRILTGTHVLSSGYFDAYYLQAQKIRHLIQKELLSALSSVDVILGPTTPTTAFKIGEKIDDPIQNYLADVFTVAVNLAGLPAVSIPAGFDENQLPIGMQLMGKHFSEAQLLSIAHLYQQHTNWHQLSPEQHR
>NZ_LT906442.1|WP_058480521.1|2036770_2037067_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-subunit-GatC
MTLSALELQQIAKLAYLEEDPSHTEKLTEEISAIMDFVDQLKSVNTKDVSPLFHPLSLHQRLREDAITEKECIAELEALAPMFEDQMYLVPKVITTEK
>NZ_LT906442.1|WP_058480577.1|2026147_2036710_+|SDR-family-NAD(P)-dependent-oxidoreductase
MKNELKQTSHDSSNEPIAIIGMGCQFPGLDSDIEDVNAFYQMLINKQTPIKDMPKERWNLEEYYDPDRKKNDKFITRKGGFLTAPELFDAPFFKISSAEAKQMDPQQRIFLEVSMHALNHANIPMRSLKDSITGVYCGISTYEYSQLNYKDHIKFTAYTPIGIANSAAAGRLCHFLNLKGPSMAIDTACSSSFSALFLAVSALRTYECNMAIVGGVHLSLCPESFIGLTKASMLSAKGQCSSFDKNADGFVRSEGCAVVIVKRLSDALKDKDTIHAVIKSMVMNQNGDGTGLAAPSIDAQIDMHETALKQANLAPSDIDYIEAHGTGTIVGDPIEFNAIGAVHKGHHKNKPLVVGAVKSNIGHTISSSGLASLIKATCALKQEKIPANLHYSTPNEEIHPEQIPAEIPTETIDFKKSNVKKRIVQVSNFSFTGTNVAAILEEAPRQEISSQKPDEDLPQCFVLSANSEPSLKSMLFQYLEFLKNTKASLKDICTTLMVCKDHMKFRCAFVVQNKTELIRIIESNHFQISKVSIHEEKISISENPHSIQQAYLNGYDVSTVLHNVSFNKVEVPQYSFDRKPHWHEIRSSSDSLQWICSIYPLAKEEQLITIKAKIKSMLSTIINKSELNDDLDLEALGFTTAHLEQMDRDLKELFDAVLEIPSLTSMRYLTIDKLSRYIQQLLIPINVTRQPTITVLNPEPIAIIGMSCRFPKASNIDEFLSLLKNGETGMTDIPLDRWDNEKYYDPDPNALGKLYIKQLGFINDVSRFDAEFFNISPREAKLMSPQLRVFMENSYHALEHANLPLDAVKDTVTGVFVGVGTNEYPRVLAYQGVTLEDLNIFFATGNVLNALAGRVAYSFDFHGPIQAIDTACSSSMTAIHNACLSLQSGDCNMALAGGVNIILTPDSNITLSKARMLSPDSRCKTFSEDADGYGRSEGCGVVVLKRLSTAIKDNDTVLAVIKGTSINSDGKSGGFTVPNGTSQEEVILSALAKAHLAPKDIDFIEAHGTGTPLADPIELNTLVKIFAESHSNQHPLYVSSVKTNIGHSESASGVASVIKTILSIQSNTLFKHLNFKRLNPAIELKNTVIPLESFGWEKKDGLRTAGVSSFGFSGANAHIIIQETPTKRQTERTLPKECILVLSAKSTTALNSLIASYNDYLINTSNHFADICYTAATCRNHFQYRTAIIAASAQEASQKIQDKQYTISSINKEIDQNLDWDSLEALQKAYLNGYKIEWNSYFKSLKTSFNKITLPLYPFDKTEHWYGDGFKIKDTLIPKEWGFKTDWLASAIDKSNTKIQGNRWLYIGPDDLESALRAHGLTMTSENDNHSLSNLSGIIFAPGFQSFPQADIDYNINEQKRILKQFLTLVKQLDDEKIELQLIVITSNAIPELSGDAINIASSPIIGFFKTLILELPQFNSIAIDVDNHEIIDSAQWVIDEIHHNHSHKYEHLVAYRNKKRLVPRLKKQVIADHKRYFHGITGRYLITGGLGGLGLITAQALLSSGARDLVLISRHSNKQSSKEAVKGLQSLYPTAKIQALSVDVADKKQLKEAIKQINSDDLLRGVIHAAGAAIKTSLVEHKTDDVDYLYSAKVQGGWYLHEFTKDCDLDFFVVYSSISSVFGSNKESIYGATNSFLDALIAERIRLGLPGTAIQWGPWGEVGMASKRSRNQDLKKALISNAQGHALIKVLINGEYTHEAVISPDYLKFMLDFVPKPLPAFHEQLLQDLSSTDKIIHHDLSPWLSEYLNLSESKHLDECKQLLTDICKSILDMPDTEEINGDEGFFDLGFDSLMITELASEIKKRVDPILKIQVTIGFNHPTINKLSQFIKEELDQHLIYKQDNNLSNKPVDDSIAIIGMSCSFPNAPDVASFEHLIEKGLSGIKDIPPERWDNSKYYDSNMDAPRKSYVNKLGLVDNIDKFDANFFGISPREAQFIEPQQRLFLECCYKALENANYPIKSMQGSLTGVYAGVGPNEYYAMLEKSGFSDLELSAYSITGNVLNLIPGRVAYVFDLKGPSLSVDTACSSSLVAIHYACQSLRNKEIDYALAGGVNILLLPESNVTLCKARALAPDGLCKTFDERADGYARGEGCGVVFLKRFSDAIKDKDNILGVIKGSAVNNDGRTSGLTVPSGTSQEDVMKRVLALSKLTPGDISYIEAHGTGTPLGDPIEVQAVNQVYGKQRNKNNPLYIGTVKSNIGHLESAAGVAAVIKTVLGLKKHTIFKQINFNKLNPNIHLEETRIATENIEWTSTAKNRTAGINAFGFSGTNAHMIVQEYNQDQQTSPTRHDRNGVLFLSAASEESLQRLIEKYIAFLQTTTDDFADICYTAASCREHYNYRIAVVAKDSSQASQLLSKREFYTPDTVKQGNVLIDDPILQELTIDYLKGKLPDFSIYFQNNGETYLKVQLPNYAFDRKRFWPQPKLSNELQLNELPPLLTQMIVNSGIENPKELSLDIKLYNHTGNLVSQIEGFQLNSLGQNNTRPLENLYFTEWIPYNWNIQPSKKLPKLLVISSEPDKAQTSLKDVSYQLISNVNQIDTFEQRSLIFFFQQDQMDLLLSCFQRCFLQKPEHFILITENAYDVQEEDVVNPYHTMASSFWKSFYNELGLSTNYNIDIGSNNHLKPIFSCIFNVDNKESLLALRDRIYFPRLKKKTLPPRVIESKLSLDNNATYLITGGSGGIAKLLIRYLITRGAQHIVTLSRHECPDSILEEIKEPVQHKHYQVDVSQYQKMNKIIQDIQASPHPLKGVFHLAGIIHDGLIATINNEAMQKVLQSKMESALILHQLTKNLLLDQFVLFSSSASLLGPKGQANYSAANGFLDGLAHLRHHQGLPALSINWGPFDGIGMTRNLSSNLKSYGFIPLNHQDIEILDQLISSNETQLSPLPLNWGLYSKHSKPALALADLFVQEPPATEPLINLLNQLNVEKRIALLSQTLRNIVAQVLGMSSANDLHFEDDLYSKGLDSLMAMDIRARLQDIMQCPTLSLPIEYFINTPTLVKIAQQIAKDIDLIFLSQVNIPATLSDNEAIALTDSQFGFWGLSKVRYAYNLGTQVQLVGKLNKDFVHLAFDHVVKQNPAFWIHFDPEIPIQTIKKDGKFNIYFEDLSLVGDATALNGVFSSNIHKFIPLQESPLIKVFLYRINNDLHELHIVIPHIIVDGHSVDMVFEQFKRAYETLCQNQKLISDSIPNYFFDYVRLRNARYEKRLKDKEVFWKRYNKDFSLLRFARKYHLPDPSGESQHQFHYALDQEIIDSVIHWHSAQNLNISSGLTAASLMALSAVSNKSNIAFNLIHNGREYSKYQTVVGLFAEYKRLNIRINKNQSLRECINEFEKQLNETAPYQSCLHSIKDKGLKSDKSSYSMLLLETMNRLRLYNRFKKSKLSKKVINEYIHTYNAMLANTKSIHFKQTLNKWLNWKLPLINVEGLKVVITMTTSFFNKEIPSNTIANLKYNYPSHFGCLERPIGIHTLWIYFSRNQFGEPTFSINGAVTTECKDKIAESLKHILKKFTENNEITMEELI
>NZ_LT906442.1|WP_058480513.1|2046240_2047185_-|S49-family-peptidase
MNNDNSSDSQDLLKQLVMDYIQDKKKQRKWKWVRRSIIAIVILYLGYEFYDLTNEAEESTKKEHVGLIDLEGEITDSSSASADNFIKGIDKAFKNASMKAVIFRINSPGGSPVQAEYMYNTIKYYKSLRPEVKTYSVCVDMCASAAYYVAVAADEIYSSPASMVGSIGVIYNGFGFVDAIQKIGVSRRLQTSGINKGFLDPFSPTSESQQQKLQTMLDLIHKQFINRVKEGRGDRLHINEDTFSGLFWTGEQALDIGLIDGFASSGQVARDVIKINRVVDYSYKQNVVDRFVKNLGTAIADQLPVSLGLKPGLK
>NZ_LT906442.1|WP_058480512.1|2047272_2049849_+|ATP-dependent-chaperone-ClpB
MRMDKLTSKFQSALADAQSLALGRDNGFIEPEHVLKALLDQQGGSCRPLLSKAGVNIPLLRTLIDQALDKLPKVSGTGGDIHISNGLTRILNLTDKISQQRKDNFISSELFLLAAITEDGSLKSILKQADADPKQIEKAIDELRGGEQVNDPNAEDQRQALEKYTLDLTERAELGKLDPVIGRDDEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKNKRLLSLDMGALIAGAKYRGEFEERLKAVLNDLAKQEGQIILFIDELHTMVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQKVLVDEPNVEDTIAILRGLKERYEVHHGVEITDPAIVAAATLSHRYISDRQLPDKAIDLIDEAASLIRMEIDSKPESMDKLERRLIQLKIEREALKKENDEASKKRLGDLQKNIDELEKNYTDLEEIWKAEKATMQGSTQIKEALEKAKLELETARRAGDLSRMSELQYGRIPELEKRLSQVASAENMETKLVRNKVTEDEIAEVVSKWTGIPVSKMMEGEREKLLKMEEVLHNRLIGQNEAVDAVSNAIRRSRAGLSDPHRPIGSFLFLGPTGVGKTELCKALASFLFDTEEALVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTETVRRRPYSVILLDEVEKAHSDVFNILLQVMDDGRLTDGQGRTVDFRNTVIVMTSNLGSHLIQEMSNKYNYEQIKSAVMELVGQHFRPEFINRIDESVVFHSLAKEQIAKIASIQINYLHHRLKQQNMNLHVSDEALNHLAEAGFDPVYGARPLKRVIQQQLENPLAQSILTGQFKSGDSITVSYKDGNLVFNGK
>NZ_LT906442.1|WP_058480575.1|2049907_2050693_-|hypothetical-protein
MTLSASLGYSGAMGPASIASPGKIYIGAFGGAGAMTSGDIGQYGTAFILDVNGPLAVNAFGTSESSSMGVVGGHIGFAGPSNLGVHLAVTPAIELEGYYMGGAEIEGHDINNETTRLPEHDFLVKYPLRTGVFLVNAVLNANNTMFGKIKPYVGVGIGSAVVSIHGASAIQLSPPEPGLNHYNSDSDDTSVTFAAQPKIGFHYDLGSSTSIFAEYRFLYLSETNYVFGSTVAAGHVATAPWQVKIKPQCYNMGTIGIDFDV
>NZ_LT906442.1|WP_058480511.1|2050940_2052212_-|hypothetical-protein
MAYTPLDFALFLAKTRNLEIQYSTLLGRYKIKSEAPVQVKQPPVQEQVVQSGLEILLARVHEVNTCKTERKTAQDVFIKLTTELRDVLKENNEERNRQASLYLLGALLHRYFRIIKEYQNKNSYTYFSLFAANEKNCNLFKAIRSALGLPPEMDENYRAQDLKILDEVTIVKALEIFKKNMLATGGKETPKYKSYPHFAQDRNFEEYLQDIIDEHKKKGGDLLKEFQAIGFIESLALYLDEEQRRVVDDINKWSVLLKKEHPDFSKLNQSLLLESLKKNVANSQSQYDIANLLSTAQIQINFENFDHTTFVETMQALQISLASHRLLGGYCLLLQSKFVSKGLKGCIYQVLGIEENIKELTDKDILRSIKLLKQYIEFKPSLKINTEFFGGFDKFKTKVYQVELALLNVGEEPKPEEKSALLL
>NZ_LT906442.1|WP_058480510.1|2052224_2052833_-|hypothetical-protein
MLEFAKFQQNALSLSDKLMRRFVSSLGCCSFFYTNSINDERIQDCLLISLVAKSLHKDNDSVLLEYLRSNFLNARVTQRDLAEFKQKTLAGIYILVWSRYSSTISTYLNQSMIELFQRDLEVLSLNDMNSQLSDESLYALSQYCSFAYENQQIKIYSDLMRHLGESIQVDIYTLRSSKQESSSSFYDVYLGVKRTLGLNFLF
>NZ_LT906442.1|WP_058480509.1|2053131_2054496_-|UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl--meso-diaminopimelate-ligase
MKHIHILGISGTFMSALALMARDSGFKVTGSDANCYPPVSDLLTAKGISWTEGYEDASLALQADLVIIGNAIKRGMPVLEAVMESGKPYTSGPQWLAETILEKYQVIAVAGTHGKTTTTSMISWILDQAGLKPGFLIGGVASNFNTSSCLGAGNWFVIEADEYDSAFFDKRPKFMHYRPRIAVLNNLEFDHADIYQDLAAIQKQFHYLLRTIPPKGIAIKPRDDKALNEVLDRGQYSQVEETAFDGQAEWVAELLDDSGSSFKVLHHGKVAAEIHWPLIGRFNVENALAAIAASYHAGVEIRIAAKALEQFIPVKRRLEVKSNQFGVTVYDDFAHHPTAITKTIDALKKSKRHLRIFAVMEFASYTMRTGVHAADMAEALAPVDGAFVLEPQDFNLQKTVADWICPYKLCKSNEEIIQSVVSQVRTGDAILVMSNRGFNGIHQQLVSSIEKRFS
>NZ_LT906442.1|WP_058480508.1|2054509_2058331_-|TIGR02099-family-protein
MKNLWVNRLFKQAWLALAILIILAAVISSIFRSLTPWAKQYKGEVEQRLTSIIGQPVTIDSMETGWYWFEPVVKLKHVSIKSNDQRPIEIGQLFVGINLLKSLWHWRIQPGVLYIDSLDLSIRKSGNQWKIDGLSSNEIDATEINESKTQQLLLWLSQQESLILKHVSAHTHLQDGALIPINNLNLSIVNKGGYYKIKGEASLLQTNATKFEILGHIDFDPTELDQTKGQLYFSVKKFLPAQWQSILPNSLVQIEGGKGDIELWADLNKGTLTNVQAHVKFKRLAWKLINQTKSELIQSFYANLGWQPEKMGWKFQADHVKFRAAGVKWPENQYLVRFNKEQNTYQVFVKSLLVESLVNQAIEWPDSFYQILQLKPHGVLTDTQLLFKQNQVLYFLTRFSNLGWSGNPTIPAVENISGVLNWQPDEGRLELDSENSQIEVNGYPAQSVDILNGALDWKRISNGLRVSIDRFVLSQPDLTLSANGSIDEVTRDSLGHIRFEMDFTGKNLQKWIAFLPKHRMKPKLFMWLNNDVKRLGQATGRVLVNGMAKDFPFDNNQGEFSIQSHVLGGDLLITPKWQLLKNLGGYIRLHNRNLEIDVLEGYVKDVPINQLNLRIDDIGKDRETLLLHTIVQGSAQQMLNFILNSPLRDKLNALKMLTIKGILSINLRLEIPLYPENDDNLARGEILFKNNTVQIHHQLGNLSLDHLKGNLSFNESEIVDSTLLARAFGYPLNIRVKSEILPQPLTKISIEGETSIESLKRKVDMPIFSILQGRIAAKALIKITDNPNDLDNVVFHSDLRGLAVNLPQPLGKNYKDKVPLLVNLDFNPKKAFRLRTKLANRLSADIMFQQKNGVFSLDSGQIQLGDSLAVVQKRPGLGLVGKLKGLDIEAWRKVVKQFATVNSQYSILHKLSYIDLKLVHFDWMHQKLDNLSIFAKKMPDNDWSILLKQLNINADLLYHASTNTLTGFVKRLHMEKITGSPVGASSAANSNPDEIPNLNLRIDNLSIGQLMIGNVTLKSHSTPEQWKIDYCRVDSPYYQINIEGDWNKKNNKHQTTLQSRMNLKDLAKSLKYWSISPAVDAKKGYMEFRGGWNGRLYDFSLSNLNGTMYMQLKNGRITHLSPETEEKLGLGKLLSILSLQTIPRRLKLDFSDLSNEGYSFDVYKGNFNIKRGIMTTSKSYIDGPVAYADMKGDLDLVHNLYDLNLRISPHITASLPVVATIAGGPIAGLAAWVANKIINQSMQKITGYTYKVSGPWDNPIVQQLTIEKQTNDT
>NZ_LT906442.1|WP_058480507.1|2058308_2058782_-|flagellar-export-protein-FliJ
MSERLGRLTLLLQIKQEHTHTAYLELLKAKDLFNQNKARHEQLVGYRQEYMKQLETMGQQGTTLGPLRNRLNFINHLDTALIQLNTHLAQLAKARTKADLSYKQAKTAEEGIKKLIERVKKAEEYILQRQEQKEMDEYARKQWYNKLNKDHEKPLGE
>NZ_LT906442.1|WP_058480506.1|2058778_2060131_-|flagellar-protein-export-ATPase-FliI
MNEFKSHLRTILPEVRDNQHSGLLHCGRISRAVGLTLEAKGFNQPIGARCYVNINEQNKVEAEVVGFSNDSAYLMSIGNIQGIAPGMRIIPTGRVAQVAVGPQLLGRILNGSGNLIDDGPVIDTVDTYPLMGGVINPLKRAAIDTALDVGVRGINGLLTVGRGQRIGLFAGSGVGKSVLLGMMTRFTEADVVVVGLIGERGREVKEFIEHNLGVEGLKRAVVVAAPADESPLMRLHGAKVATSIAEYFRDQGKHVLLLMDSLTRFAQAQREIGLSIGEAPATKGYPPSVFAKLPKLVERAGNGKPGTGSITAFYTVLTEGDDMQDPIADSARAILDGHIVLSRSLAEEGQYPAIDLEASISRVMQSIVSEQHMKDMLQFKKYLSIYQKNKDLVLLGAYTKGSDPELDMALSAINRLRDYLIQNMNEQVNYNHSIELLEELVATCLTRTKP
>NZ_LT906442.1|WP_058480505.1|2060123_2060774_-|flagellar-assembly-protein-FliH
MANEFEPFDKQLKVSEFSAWEYKANNESAPAEEEHAELITELEALKQNAYQEGYTNGMQQAQKEIDDMKSELVKWLDLLQKPVHIIDEQLTQEIITTVIWLCQKSIAVELSISPDKLHSLFEKIKKELPSLHGKRILKMHPEDVDWIKANFSHNEIEGLLEILDGDPLLSRGDFYLQGDHSELDGRIETRLSMLFDQFITTEHLQVQPNSGKENNE

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Crispr_ID: NZ_LT906442_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906442_4

2465867-2465967

Orphan

Consensus_repeat	Method
GGCTCTTCCCCATTTCCGGGGGCACT	CRISPRCasFinder

1 spacers

PD-DExK

The CRISPR arrays of NZ_LT906442_4

>merge|NZ_LT906442|4|2465867-2465967|CRISPRCasFinder
GGCTCTTCCCCATTTCCGGGGGCACTAATCAAGAACATAAAACTTTAACCCTTGACCTATAATTTTCAAAGTTTCGGCTCTTCCCCATTTCCGGGGGCACT

>NZ_LT906442|4|4|2465867-2465967|CRISPRCasFinder
GGCTCTTCCCCATTTCCGGGGGCACT	AATCAAGAACATAAAACTTTAACCCTTGACCTATAATTTTCAAAGTTTC
GGCTCTTCCCCATTTCCGGGGGCACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906442.1\|WP_058478937.1\|2454282_2454579_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_LT906442.1\|WP_058478931.1\|2467744_2467927_+\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_LT906442.1\|WP_058478925.1\|2475331_2475757_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_LT906442.1\|WP_065235630.1\|2461710_2462304_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_LT906442.1\|WP_133141267.1\|2459471_2459663_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058478924.1\|2475902_2477564_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274008
NZ_LT906442.1\|WP_133141269.1\|2468734_2469373_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_083499995.1\|2460277_2461357_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_133141270.1\|2471099_2472191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_083499994.1\|2466316_2466706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058478932.1\|2467006_2467606_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236057
NZ_LT906442.1\|WP_058478938.1\|2452434_2453766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058478928.1\|2469886_2471020_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058478933.1\|2464680_2465694_+\|DUF1016-domain-containing-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|377634
NZ_LT906442.1\|WP_133141271.1\|2474465_2475224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058478936.1\|2454843_2458953_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|222980
NZ_LT906442.1\|WP_065235629.1\|2463374_2464598_+\|DUF4111-domain-containing-protein	unknown	unknown	gnl\|CDD\|379178
NZ_LT906442.1\|WP_058478955.1\|2462333_2462804_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_LT906442.1\|WP_083499993.1\|2472685_2473687_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_014844323.1\|2454038_2454293_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|274227

Protein	Function_ID	Function_description	E-value
NZ_LT906442.1\|WP_058478937.1\|2454282_2454579_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	3.96643e-17
NZ_LT906442.1\|WP_058478932.1\|2467006_2467606_-\|short-chain-dehydrogenase	gnl\|CDD\|236057	PRK07578, PRK07578, short chain dehydrogenase; Provisional.	2.21722e-125
NZ_LT906442.1\|WP_058478925.1\|2475331_2475757_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	9.26616e-52
NZ_LT906442.1\|WP_058478931.1\|2467744_2467927_+\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.1288e-09
NZ_LT906442.1\|WP_065235630.1\|2461710_2462304_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.43913e-17
NZ_LT906442.1\|WP_014844323.1\|2454038_2454293_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|274227	TIGR02606, Antitoxin_ParD, putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15. [Cellular processes, Other, Mobile and extrachromosomal element functions, Plasmid functions].	7.44375e-16
NZ_LT906442.1\|WP_058478933.1\|2464680_2465694_+\|DUF1016-domain-containing-protein	gnl\|CDD\|377634	pfam06250, DUF1016, Protein of unknown function (DUF1016). Family of uncharacterized proteins found in viruses, archaea and bacteria.	3.93144e-74
NZ_LT906442.1\|WP_058478924.1\|2475902_2477564_-\|hypothetical-protein	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.69857e-06
NZ_LT906442.1\|WP_065235629.1\|2463374_2464598_+\|DUF4111-domain-containing-protein	gnl\|CDD\|379178	pfam13427, DUF4111, Domain of unknown function (DUF4111). Although the exact function of this domain is not known it frequently appears downstream of the family Nucleotidyltransferase, pfam01909. It is also found in species associated with methicillin-resistant bacteria.	1.86563e-08
NZ_LT906442.1\|WP_058478955.1\|2462333_2462804_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	6.78296e-32
NZ_LT906442.1\|WP_058478936.1\|2454843_2458953_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|222980	PHA03095, PHA03095, ankyrin-like protein; Provisional.	8.82189e-16

>NZ_LT906442.1|WP_058478933.1|2464680_2465694_+|DUF1016-domain-containing-protein
MSSKKLLTDEQQFFSEISELLRSGRELAYRSVNSVMTKTYWQIGKRIVEQEQQGKARANYGEYLIANLSRYLTDCFGKGFTEANIRNIRQFYSRFSNFDQFTTQCVANLSWTHIRLIMRLDDEKERHYYLQEASSQNWSTRLLERNIKSGYYRRLLSTQGQEKLNIHDGEQHLDFIKDPYVLEFLNVPEDLKGQESLLESNIIEHLQKFLLELGKGFSFVARQMRVSTETSHFYIDLVFYNYLLKCFVVIDLKTEKLTHENIGQMDMYVRMFDELKRGKDDNPTIGIILCADKDETMVKYSVLKESKQIFASKYKTVLPTERELVSFIEQENYKNLL
>NZ_LT906442.1|WP_065235629.1|2463374_2464598_+|DUF4111-domain-containing-protein
MNALNVLHELSNAINKLYGYVTQPGDNFGEPAINSGPCAVFANSFFKLWNQKFSEKVHIVFIMQKDTDECWHTLIRLPNGSLYDGGYGVHSEEKYSNEFTVVNMYEYNRELLEKHAYGLEREYPRYCPSFSVSAIEQLIVTYLEQIPIDSPSNVVIQSIDSEIKALLQELVQKVQANLLDSFIGLYVGGSIANNSFNANTSDIDCYIITTEPLSEITISQIEAMHNELYSSHTPYVKKIEASYIAQNELLNFNPENKRPYFNEGKLYLAPYGNNFIIELSLLRNKGIAISGPDIKGMIKEVSPEELQLAIKKNLAEYWRVMLTDLVKLKRSDYQVFAIFTMCRTLYSLETGGITSKTKAAHWVINKYSVWSDLILKAIACKPGSELNKLKETQQFIKFVLDFVSSVE
>NZ_LT906442.1|WP_058478955.1|2462333_2462804_-|GNAT-family-N-acetyltransferase
MQIRRYQDEDAEFLSQIYYHTIHTINAKDYTKEQIDAWAPWSSVQDYSGWKQKLEKIVPYVAVINDTVVGFAEFESNGHIDCFYVHHDFQGCGVGSALMAAIDQEVRSKALSRVYAEVSITAKPFFERKGFNVVKQQSVTLRGVQLTNYIMEKYYR
>NZ_LT906442.1|WP_065235630.1|2461710_2462304_-|class-I-SAM-dependent-methyltransferase
MMTEENQGTCYDRIAADFAKMRDSFYKEQKYLDLLISYLQPNAHILDVGCGSGNPIASYLIKKGFRVTGVDGSKELLTIAALNCPTMHTVCGDGRTVVLNEQYDALLEWWCLFHVPKQDHEKMIARFAKWLKKDGLLEFTSGDAEYEARNSDMLNQELYFASLSVGAYEKALKENGFELLLREYDQEHHLVWMARKK
>NZ_LT906442.1|WP_083499995.1|2460277_2461357_+|hypothetical-protein
MNKKHDTMKKTNKQMLAAQNKPEAIPQMPWHERFYQFISSSSNFLIGKVTEDKFAFNELPDEIKYEIASFLTTKDFINLSKTTKSNSPFFTTNQHLKQGYEVRKFLHHVVRGNHEAVAKMLENNPSLMVIRGQVKDLSGREFSNISGFEYCLWALDKHMWTKMLDCVPKTEDGERIKTELRKQYQMIKEHGVTYTLHGVTKDYRPETTTTTEKHFDFKGTIISELQKFLDRNNNHQWITGVGGAQRLLPAHVVDEYCSDRPFELLPFYYFEQRHTSSKEYKNHLTNKKESWFGISSKMGESFAIVKGTGVVMSMARAWVPGVRDDLGAIRILYRVRKKDFLALEDDLKPCNSSENRYNY
>NZ_LT906442.1|WP_133141267.1|2459471_2459663_+|hypothetical-protein
MAQKECGELLTQIQKELATKTSATKGSCFFGLGGRDNTTETLYSEVLTLVNNYNNPSNKFDFK
>NZ_LT906442.1|WP_058478936.1|2454843_2458953_-|ankyrin-repeat-domain-containing-protein
MNPAPIKKTTLTKKDIISKFVELHSLVDNDELDKIKEIVQQAIHYKNTSPDFWSWSTEKALLQAFELAISLDRIETVEFFLKAGVRPSGIDIAIMRKSLPMVKLLVQYGCEIREESGQYYDSSLIGDNTAIECALKTLGSGDIVQYLLSEGASAKGCVHTKPKKPAESFLAYAAKKGDDATLEQLIRRLEYWCDILIIPSNKFWNKFSFIAGKLKGRDAIILIEGKQEIFFADWSERSLEKIVHKPKYDLYLQILFSDSPLKLASKRQLKWITKETGIRNDDLELALQLAISGAHRKYIKRIEPIKKTVSDYYKDKSKLQNQYPISNDKKEQSDRDDKIDKELSRTYNVENIKLLEKKIQEAGAKYRKIIGCLMDYVIGCDFPPEFLSFFTSLDDVSGINFIGVSIHGIPITREMLKEAGISGYEKALVTIQDWQNLSENSSPRLTELKRRVFDHPYYYEPGDNTDIDKNFNFVPLYIAAQIGDINTVKFRLTQGVNPNESILDQAQPIEYAVVNAHESIVRELINHPDFNEEKFKTAIELAKKHGHKTIEDLLKTSRNKSGDINSFDVAGNTELHYAIESGDIDEVRRLIDMGADVNLRGKLGYPLYICVGKSRFISEIGYYLKNELPPEFSLIQTEILRLLLEKGANPNIDANNSLLRYAESLEIIKILLPICKKNDITGYDPWEKKEERFPWYYTMLFNTFESPEWPGILKLLIEEKVDLNVISSSGKSLLHLVAETFPSVNQVYHSMEQTMRTILGVEDRALSRLEKSYSLRMMANKIAFLKPLKQLEFLLNHGVNPSLKNTKELEPVPHYILRKCDLSHIVNGYAQIFDLFISKGFGINEQDSNGYTLLHIASMRGDLDAIKYLMARKADVNIPDRWGRTPIYYAATGSPSRYHPKANPLTTEYLVHYCQAKVNVLDNEGLTPLQFSIEKYYEYGYPNLSYKDTDKQELRDSFLKAQDALWNEEYRRSCLLENAVGNNLTVHAASNEYTSKMKSYLSKFKTTIPIEILLSNTSLSKKDRKLFELYRDRISGQFMNIPVELNGRIYDLTTLTASHNNDPITGKPFGLSDIQPAEEVANEILELLKFFEITPNQPQQEMQSPSNVELVVTKHVKIENEKSSENSMHSLPKANELPEQLLTNIRQLGFEGYNEVEGDGNCLFYAIIDQCQQRNIPFGHLINSTTDKTAMTLELRLKIKEYITQHSDEYKDFFPIDQYQSLTDFINKVVIQKNYAGHMEITILAQLLVADIVIIRQDGVLTSIGNGNSTQTLYLGLVDHGSMSALNHYYSIIGKPNQPPLIENKIISSQTIQDHEDKVMSTSESGAGLGANNLQGLHGSVMKGNPHSMFAHPTSDHEKTQELRTGKFI
>NZ_LT906442.1|WP_058478937.1|2454282_2454579_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSNKTYRLYPKAVEDLESIYLYSTNEFGIKQTEDYILTIDLSFQRLADDPVIARKCDYIRPELHAFNVGSHIIFFKTTDYGISVIRVLHQSMDFNRHL
>NZ_LT906442.1|WP_014844323.1|2454038_2454293_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MTRTMTVDLGNELRNYVESLVRSGDYRSNSEVLRESLRLLREKQAESKLEQLRHLIDEGEASGKPETWDAHDFLKKMKKKSHVK
>NZ_LT906442.1|WP_058478938.1|2452434_2453766_+|hypothetical-protein
MVNITGGNINKKIYDEYLFYYQSRLPKDAHRHAPVLANISVFLSNPSLITQALTVLEQEVKFLWNFENSTRTADKQLKLNQSIQFCRFMNLLWPVPNEELISNKTNNLLSKVLLYREQKHGFNFDVNLSQRPVPTFVGFVDKKEADQVLEKNQLWSDENILSPLFFHGKETHRLQLNLIMIAVELGLLDIGGWVSVVELKNILAKVKTQNDLPLWDSVIDTVAVGDNAKMNLQHPLILRKTPAIITDNMEHNSQYIYGMDPFYFHSYLMSIARKDYPYLAQCVTEKFCKSAFKLNQIENALGYKMISNYGYDKLIALDVNERDIMSTLERLAKAYNTNNHIITSEHILQYQKAKTEGKAFNEVTNSKKLEIRGGKIESNGFTFKDTVGVVLFKKPYQGWQEYKEQRNPHPIMETSEKTESFNEGTNSNKLENWGSNKRAKVCF
>NZ_LT906442.1|WP_083499994.1|2466316_2466706_+|hypothetical-protein
MKEVSRLKIQMAKKYLHKKIKQGDNGYPAATVAYYGPNADIASKVVVTILLNEDDDPAYVEKWYSSMDIRKVDFVHLEIVEFIKSFQVRSIFALGEKILGCPHEEGIDYEENGHCPECPYWKDKDRWDL
>NZ_LT906442.1|WP_058478932.1|2467006_2467606_-|short-chain-dehydrogenase
MRILVIGGTGTIGQSVAKELSLRHEVIIAAREHGEVRVDIADKNSIEMMFQTVGKVDAVVSTTGKVHFGAFHEITEAQYALGLNNKLMGQVNLVSIGLNYLNDRGSFTLTSGILNRDPIRLGSSASMVNGAIDGFVKAAAIEMPRGLRINVVSPTVVSESMDKYADFFRGFEPVSAARVALAYVKSVEGAQTGQIYCVI
>NZ_LT906442.1|WP_058478931.1|2467744_2467927_+|transposase
MVANATYFFTLNLQNWKSNLLINPINSLRFVFKKVQKNHPFYLDAVVIMPDHCHMMMTLP
>NZ_LT906442.1|WP_133141269.1|2468734_2469373_+|hypothetical-protein
MFNDAGYKHRYRNLEKEILDIRMDSLEQRLTHVFKENKVDQNIQQQIAEVVDFFRKRPSLIEEYKAFITLLESIQIAENQPEAVAIALIKLNQQIPDRQQHLRLLNIGTIIGLVALTLVGLAAIAGAILVGLTVSVFDPMMGISHAIALSMCGVAALVMAGCTLGSITPSRELDNEINREKNLLSFFATKNSDQNTEQEPIVDNQSLEHVAF
>NZ_LT906442.1|WP_058478928.1|2469886_2471020_-|hypothetical-protein
MLTNRDTWILILTGLITSIIFTATYLLQLSAFMYVIFPLLVGLLFALSYNGRNVSELLGSSFFVALLLSIPFRGYGIWESEGTSHINLLIFYPVLVYITHCFHYTYHHNGGHWNMSYALLFEAAWNTLILLLFGTLFMYLSGNLILYPSFLFDSIYSSFLYNRVSTNGAFSLFLILFLLFLGIGIGQYNIKVLHQLRFILRTCMYYFLPFLVLTSVTFFILFWQNTDLNPNIIISAFFDLTLVSILFLNAYYQFGNNEKKQLAWLNGLLRGYKVFLLIMILIANYYAFRYMSLEFNQLICLTIAFFLGCIYAYSAFRPGKEAQKIMEEGNKYLAIVFMTALYLAIFPSFDFTVNQDKAPLSIWDGADYIRKHAFQDS
>NZ_LT906442.1|WP_133141270.1|2471099_2472191_-|hypothetical-protein
MLTKKDTWILNLTGLIVSIVTIFVLWRQFYIFVDFTLLFGFLFTLSYNGQNNLRLLGSSLFIALILSLPGLWISNPIKPGFFYFLVYCFHYTYHRSGNLWHMNYRLLFEAAWNGILVLLVAVLFLLASAVLIFCASFLFSSQGSPFVFNLIYTNTGRLFQLFLTWLLLFIGIGVAQYHIKTLCQLRFILLMSMYYLLPILVIISSVVLILLWNIDLNPNAIITVFFELTLLGILFLNAYYQDGSDEIKRLVWLNWLLRGYKVLLLLMILIANYYAFRYVSIELSQLIYLTILLFLGWFYAYSAFFSDERAQNVVENGNKCFAIVFIAAFYFVIASPFNFTVNKEKAPLSLWHGADSIGKNGAQ
>NZ_LT906442.1|WP_083499993.1|2472685_2473687_-|hypothetical-protein
MNEKKDTMKESNKPCNLSETQLYMQDKFECYDELPNDIKYVIAGFLPTTDFINLSKTAKSNSPFFSTNQHLKQVYEVRKFLHHVVRGNHEAVVMMLENNPYLILIRGQVKDLSGREFTNISGFEYCLWALDKHMWKKMLDCVPKTEEGERIKAVLRTHYQKIKEHGVTYTLHGVTKDHMPETTSRTENHFDFNSTIIKKLQEYINTVNHKKWVQGVGGAQRLLPVHVVREYFSDTPFYPVPTFENQPKSSKEFENWLTDMKQSRLCGKTKLGVNSAMYRGSARCGGHASRGTRAKSQVDLNAIMELYKVRTNDFLALEEDLKPCNLSENRYNH
>NZ_LT906442.1|WP_133141271.1|2474465_2475224_-|hypothetical-protein
MHQSGAFVRTAVLVRPELARDYHIPSSQQLRIKNQHVNYMFSGVASSFIDLGNYFLEFGNSYGNQFDDGASFSNDASQPLDGLKNLGKGIATLCLSPFMFIIERAGLSSGLKEDPLVKQMLSPLAHLEKFVGDLLTGTMLILKGLVQLATFPMTWFIKVPIRKFVAWGSPTSESEDSFDEGVENNPGSYYEMTEEFERNDTPSAIPVEEHGLEEIEEEDPKIEQSKVAKHEDKPRPKPSDDEIHASDPLSYN
>NZ_LT906442.1|WP_058478925.1|2475331_2475757_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MRLTIKTIQYFIITALIFSLSACMTTKPTTGSYTVKGKVYTPLKSAKGYKARGLASFYGNRFHNRKTSNGERYNMHSMTAAHPTLPFNTRLRVKNVKNGRTVVVRINDRGPFYSSRIIDLSYAAASRLGITSLSMVEIQAL
>NZ_LT906442.1|WP_058478924.1|2475902_2477564_-|hypothetical-protein
MKKRQLRAIYTNPIEISSEQALLEQVQEFAEIKFNQNLYNHITVNKNNIKRFTSGKFDGSKYSPEYLNFLEAMIQALTSAESNVNTRIIRDQYALYDHYSRQPRTKKDYPAIEDIKTDSTLESNVNKRLDAFKKKLEAIRDQQLILKAKSLAELTSKEVVEIQQTLSLMQDSYLKLCSNYSLESSVELDRKLESSFGEQSILQIRKRFAERKKAMDSILEACEGTPVAEAIRREQSMLEQQTEQFELIVKRANELMNLHQLLKQIKAIEGSVTEKASTLREDTDAPELREFIRFVTDKEKEIQQLKQGVKGNSKPYEQTDRTIDQIEQSIQQHKQRALLLLEKIEKQRNVVPENIEDNPIKALPKEAEPKNQEVLQIKKERLEEAINLIQRYREKLEKEPDKQRTVRFFHKSRNSAKIKYCTSLVQKLTEEVKTLTLESDLHQIINRAHGEVILGGDQTEITKGGSYFGTSRMLSLQRLLGIDEAWEKKGHSKFLGFSTQSDLHGLKTSGVVGDDVRGIVSNYYSDNPSSREQYQELIGQVFPDQEYPKPPCN

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Crispr_ID: NZ_LT906442_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906442_5

3625315-3625424

Orphan

Consensus_repeat	Method
AACCGAGCCGCGCACGTCAGCAAGCGGACCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906442_5

>merge|NZ_LT906442|5|3625315-3625424|CRISPRCasFinder
AACCGAGCCGCGCACGTCAGCAAGCGGACCGACTCACTCCCTGCTGTGACTAGCATTTGATTCAAACAGCAAAGAAGGAACCGAGCCGCGCGCGTCAGCAAGCGGACCGA

>NZ_LT906442|5|5|3625315-3625424|CRISPRCasFinder
AACCGAGCCGCGCACGTCAGCAAGCGGACCGA	CTCACTCCCTGCTGTGACTAGCATTTGATTCAAACAGCAAAGAAGG
AACCGAGCCGCGCGCGTCAGCAAGCGGACCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906442.1\|WP_058480742.1\|3620812_3622087_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370537
NZ_LT906442.1\|WP_058480999.1\|3619741_3620752_+\|asparaginase	unknown	unknown	gnl\|CDD\|181876
NZ_LT906442.1\|WP_058480749.1\|3631264_3633277_-\|methionine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234655
NZ_LT906442.1\|WP_058480744.1\|3623707_3624991_-\|VUT-family-protein	unknown	unknown	gnl\|CDD\|376842
NZ_LT906442.1\|WP_058481000.1\|3625842_3626907_+\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213362
NZ_LT906442.1\|WP_058480741.1\|3618662_3619190_-\|RNA-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|234820
NZ_LT906442.1\|WP_058480746.1\|3627849_3629961_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480740.1\|3614766_3615537_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|234599
NZ_LT906442.1\|WP_058480737.1\|3611301_3611694_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_LT906442.1\|WP_058480754.1\|3638031_3640167_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_LT906442.1\|WP_058481001.1\|3636280_3637720_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273648
NZ_LT906442.1\|WP_058480738.1\|3611818_3613882_-\|DUF5621-domain-containg-protein	unknown	unknown	gnl\|CDD\|375958
NZ_LT906442.1\|WP_058480752.1\|3634905_3635448_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906442.1\|WP_058480750.1\|3633370_3633937_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|223241
NZ_LT906442.1\|WP_058480998.1\|3615554_3616352_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_LT906442.1\|WP_058480743.1\|3622209_3623589_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|224128
NZ_LT906442.1\|WP_058480747.1\|3630036_3630669_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_LT906442.1\|WP_058480753.1\|3635514_3636192_-\|7-cyano-7-deazaguanine-synthase-QueC	unknown	unknown	gnl\|CDD\|284031
NZ_LT906442.1\|WP_058480748.1\|3630665_3631265_-\|RnfABCDGE-type-electron-transport-complex-subunit-B	unknown	unknown	gnl\|CDD\|235347
NZ_LT906442.1\|WP_058480739.1\|3613975_3614770_-\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|234984

Protein	Function_ID	Function_description	E-value
NZ_LT906442.1\|WP_058480742.1\|3620812_3622087_-\|hypothetical-protein	gnl\|CDD\|370537	pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms the C subunit of DNA polymerase delta. It carries the essential residues for binding to the Pol1 subunit of polymerase alpha, from residues 293-332, which are characterized by the motif D--G--VT, referred to as the DPIM motif. The first 160 residues of the protein form the minimal domain for binding to the B subunit, Cdc1, of polymerase delta, the final 10 C-terminal residues, 362-372, being the DNA sliding clamp, PCNA, binding motif.	0.00540091
NZ_LT906442.1\|WP_058480999.1\|3619741_3620752_+\|asparaginase	gnl\|CDD\|181876	PRK09461, ansA, cytoplasmic asparaginase I; Provisional.	6.38411e-164
NZ_LT906442.1\|WP_058480749.1\|3631264_3633277_-\|methionine--tRNA-ligase	gnl\|CDD\|234655	PRK00133, metG, methionyl-tRNA synthetase; Reviewed.	0
NZ_LT906442.1\|WP_058480744.1\|3623707_3624991_-\|VUT-family-protein	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	4.15455e-12
NZ_LT906442.1\|WP_058481000.1\|3625842_3626907_+\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213362	cd12828, TmCorA-like_1, Thermotoga maritima CorA_like subfamily. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of this subfamily are found in all three kingdoms of life. It is functionally diverse subfamily, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes Methanosarcina mazei CorA which may be involved in transport of copper and/or other divalent metal ions. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	3.94996e-124
NZ_LT906442.1\|WP_058480741.1\|3618662_3619190_-\|RNA-pyrophosphohydrolase	gnl\|CDD\|234820	PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.	2.58833e-78
NZ_LT906442.1\|WP_058480747.1\|3630036_3630669_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	3.04328e-117
NZ_LT906442.1\|WP_058480740.1\|3614766_3615537_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|234599	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed.	1.00213e-114
NZ_LT906442.1\|WP_058480737.1\|3611301_3611694_+\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	5.21289e-30
NZ_LT906442.1\|WP_058480754.1\|3638031_3640167_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	0.00365068
NZ_LT906442.1\|WP_058481001.1\|3636280_3637720_+\|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase	gnl\|CDD\|273648	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_LT906442.1\|WP_058480738.1\|3611818_3613882_-\|DUF5621-domain-containg-protein	gnl\|CDD\|375958	pfam18532, DUF5621, Domain of unknown function (DUF5621). This is a domain of unknown function found in gammaproteobacteria.	4.74851e-73
NZ_LT906442.1\|WP_058480750.1\|3633370_3633937_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|223241	COG0163, UbiX family flavin prenyltransferase [Coenzyme transport and metabolism].	6.73264e-108
NZ_LT906442.1\|WP_058480998.1\|3615554_3616352_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.69388e-30
NZ_LT906442.1\|WP_058480743.1\|3622209_3623589_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|224128	COG1207, GlmU, N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane].	0
NZ_LT906442.1\|WP_058480753.1\|3635514_3636192_-\|7-cyano-7-deazaguanine-synthase-QueC	gnl\|CDD\|284031	pfam06508, QueC, Queuosine biosynthesis protein QueC. This family of proteins participate in the biosynthesis of 7-carboxy-7-deazaguanine. They catalyze the conversion of 7-deaza-7-carboxyguanine to preQ0.	5.20377e-104
NZ_LT906442.1\|WP_058480748.1\|3630665_3631265_-\|RnfABCDGE-type-electron-transport-complex-subunit-B	gnl\|CDD\|235347	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional.	4.1986e-70
NZ_LT906442.1\|WP_058480739.1\|3613975_3614770_-\|thymidylate-synthase	gnl\|CDD\|234984	PRK01827, thyA, thymidylate synthase; Reviewed.	0

>NZ_LT906442.1|WP_058480744.1|3623707_3624991_-|VUT-family-protein
MKQIISSRQSQGFLPLAVSMMTCLIVLINVSFKIISLGGMVFAANSLIGPLIASLFLVALNTCTFKEQRHLLNLCLITLYLFCVGVYVLVNLPASEYMHDSPVYQIIFEEIPKKFFATTLSFALSFYLPHLLFFSKTNSERCTPKNSLLLFLLGGLSFFCVDFYFLFSGPHAHSFKQVFIDSLMIASLLVLLIGVIYLAFFLEFNQFFKNSSLSDQSEGFFPTYQYFLCIAVAVMLISLACEYRIVSINKDHILSASCIFFPIPIIISSIIGEYWGYRPNIKLALTMVVAQLTFDLFLMGLVTLPSPPFFNLNPFYSYIMPRRLTAGGLTLFITFFSNAWLIQYLKDPKWGINRPLRLLIANVCANSLLCLVDYSLLYGGIYPYEQIFNLVMNVWQYKLIMTIVLLPFVLWVCKSLERKEALIWQSE
>NZ_LT906442.1|WP_058480743.1|3622209_3623589_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MNLQIIILAAGQGKRMYSNTPKVLHTLAGKPMLAHVVETALKLSPNAIHVIYGHGGDLLRSSLPDLPVHWVHQAQQLGTGHAVLQALPNIPEDALVLILYADVPLIQAETLQSLIQVHQSQNSHHSALSLLVAELANPTGLGRIVRNNHDKIYNIVEEKDASEQEKKIKEIYSGICCANASDLKRWLPSLSNNNAQKEYYLTEIISLAGKENGCIDSVTCKENFEIQGVNNRLQLQELERIWQKRLANQLLEEGVMIADASRIDVRGTLSCGKDVFIDINCLFIGTVVIGDGCCIGPNCVLTNVTLGKDTEILANSVLEGCTIADDCHIGPFARLRTGTQLASHCKIGNFVETKKAIFDEGTKASHLSYLGDVKLGKGVNVGAGTITCNYDGVNKYETIIEDGAFIGSDTQLIAPVVIGANATIGAGSTIRKNVPPDELTLTESRQKTVYGWKRPEKKK
>NZ_LT906442.1|WP_058480742.1|3620812_3622087_-|hypothetical-protein
MTIFLTVLKLLIKDQLKNLIDVQEGKMVSVVPFFNYTPYNKDLSKDQKEAIGALQDKIIRFDGTGNDKADLQLVLKMIDESRKQIQKLREAHKESRDGGETVTGYNNLRNHCIAFYDKLKDINNLKSEKKPLIAKDIEISDEAQPIEEMEKSTDFQFMDRPFKYTPENIVYYHAAIYYGDEIFNPQNIGSKDLRVQKELALLERIIQLSEWIKPTYNLAEQRTRVLKVLKDLGGDNLRITQGPTGKGVSPSISLLGGLANVSVEKLFSPGEGRFGQEFNQAVRAVNNMTSEQFGKLNTDSEKELLVKQEGKSQPKATPKSQDKVEPKTKAFSLFAKSPPKPKPLTKAVEDEEEIAVEEEEVLTKRPKAKVPPKPHLKAQEPEEEKDAEEVLAKQDVGEGNKSDAENEEEQQIENEEERGLEHSM
>NZ_LT906442.1|WP_058480999.1|3619741_3620752_+|asparaginase
MKKHILILNTGGTISSVKTNHGYEPSPGFVNKALAEIPALKHKDMPRYTIKEYQPLLDSSNMTVHEWNRIAKDIAQEYSAYDGFVILHGTDTMAYTASALSFMLENLAKPVIVTGSQIPLSEIRNDAMDNVITSLWLCAHKPIHEVCVYFNQQLFRGNRTQKISAQRFDAFDSPNYPSLADIGIEIHLHDQLLLPPPKNSFHLQTITPHFIANFRLFPGFASDVLAYILNQPIRGLILETYGAGNAQNNDQRFLHLLKDACDRGIVIINCTQCHQGFVEMNQYATGHTLKQAGLISGHDMTPEAAHCKLLYLLSKNLDIPKIKALIETNMCGELSE
>NZ_LT906442.1|WP_058480741.1|3618662_3619190_-|RNA-pyrophosphohydrolase
MVIDRAGYRLNVGIVLVNDSDRVFLGRRSGHDAWQFPQGGLAPGESSLDAMFRELHEEVGLERGDVSVLGSTKRWLKYRLPKQYLRHGSEPLVIGQKQKWYLLRLVSNEQKVRLDLSDSPEFDSWRWVEFHEPEQQVIFFKRQVYTQALKELEPLLKKTRRTPYGMKRKRGNHKG
>NZ_LT906442.1|WP_058480998.1|3615554_3616352_-|sulfite-exporter-TauE/SafE-family-protein
MIIFQSLIAYMLIGLFAGVMSGSLGIGGGIIVVPGLVTVFQQFNIIPEDSIMHVAAGCSLAAMILSAMASLRAHIKVDDILWAVFKRLWPGILIGTILGSILASFIDTEWLEIIFGLFLICIAIKLFIDVHATHDERFPRTWVNHFICSSIGGLSGLLGVGGGVMIIPYLTYCGVAVRKISAVSSLCVLVVGFIGSTMFMLTGAYEMKHIPYSTGFIYWPAVLGVAIPSSLIAPYGAKLNYILPIKYLRYGFIVVLIVTATHMLL
>NZ_LT906442.1|WP_058480740.1|3614766_3615537_-|prolipoprotein-diacylglyceryl-transferase
MFTYPNINPIAFSLGPLKVHWYGLMYLIGFISAWLLGNWRAKHYQLDWNPEQISDVVFYGALGIILGGRIGYMLFYDFQGVIHNPLSLFKIWEGGMSFHGGLIGVAIAVWIFCRKYGKTYLQVGDFIAPLVPVGLGAGRIGNFINGELWGRVTDVPWGMVYPQVDDQVRHPSQLYEFGLEGVCLFVLLWCYASKPRATGRVSALFLMGYAICRLIAECFRQPDQQMGYLAFGWLTMGQVLSIPMLLIGLWLWWAKK
>NZ_LT906442.1|WP_058480739.1|3613975_3614770_-|thymidylate-synthase
MRTYLQLLEHILNHGVQKTDRTGTGTLSVFGYQMRFDLNKGFPLVTTKKLHMRSIVHELLWFLRGDTNIAYLQEHGVTIWDEWADSKGDLGPVYGKQWRSWPTADGRTIDQLSEIVQQIKMNPDSRRLIVNAWNVGELDKMALMPCHAMFQFYVANNKLSCQLYQRSADVFLGVPFNIASYSLLTQMVAQQCNLDVGEFIWTGGDCHLYLNHLEQAQTQLTREPFPLPSLHIHRKPASLFDYEYDDFEFVNYQCHPAIKAPIAV
>NZ_LT906442.1|WP_058480738.1|3611818_3613882_-|DUF5621-domain-containg-protein
MATFTVFAFGTGEHSARTQNIISQFSQACTSPHAIVEGPDLLGRQVKPNVKNATRDVINWLMQQDSIENNINLTGFSRGSVTCIQIANRLKRYESFLERRQDQLTPDGEKLLRQLKALNLHLFAMDPVAGMSDKGDMHARVIPNNVKSYVAVLQTDEMRRDFKPQDLTRAIIRSPEITQVSMLPLYGNHSDTTKIKNANMQSGATLAWYSLYQFLTEHGTTLRGNRVPQMVANHVQGERLDLANNPNAKQLLQLYSLHHLEREHYLKSGLKMKLHDGMPTARIQRTLNQHAKYYVKNSYFFVNQMERELFKLAYPKAFNYLFEKNHFDSRFRDASASSQQEVINELTVLKQEDPILFRRLGARGVLDTHEGIRVGMPRGHHYLEPCMSMQQLFPDLVPEAVKDQAPQMNRLALLEMEVYRLSFRYQRDKSELNFYGERDKIGRAKDIRQEVNTLVNNQDLDRNTKYQMILDKMELHYRELVQADSNSELKPMLQRFLANHGRTYRIHEPAFPRVLLASFVDISLSLIKEAVGFAGNLGYVGGGVLYFVGTALQDFGRRTNELLGNLGYNPFKYIVSAIAYVFEGVGYAIKNSFGLKPLTQALTSGIQYIKEAIVRAIRQDVVEPIDEIRVRLPDLAQPLLENEHGINPARDFKERLHHQQEEFQHHQPVVGIETIEDRESEAPPSTL
>NZ_LT906442.1|WP_058480737.1|3611301_3611694_+|acyl-CoA-thioesterase
MTENRKLVHQKTFDIVWGDMDALGHVNNARYFDYFQEARIDWLRQMNITMTENTGPVVIHVACTFLKPVVYPATVKVNSSLHSLGNSSMIMDHDLYQGELLMAQGMSKIVWVDYTLNKSVPLPEVIRRLF
>NZ_LT906442.1|WP_058481000.1|3625842_3626907_+|magnesium/cobalt-transporter-CorA
MILHKKNVSAKTGLLPGTAIYVGEHPPQPTKIKIHIYDKASYMTVDTFNFEQLHNAIAEQKHIWIDISGLADANTITTICTQMQIHPLIIEDLLNTKQRPKLDFFDDYFFIVFKLLKSTTENAVYSSEQLSLIIKHQLLITVRESSEYDLSSIYKRLEGERSLIREHGIDYLTYLLMDYIVDDYFNFVEATANLLETLENQLITKPEIIKLETLYTIKRRTLILRKTIPPLRDIVHLLLTDDRGLINKKYMLYYRDLHDHCIRLVESIDVHREMSGSMLEIYLSTINNRMNESMKILSLFASIFIPLSFIASLYGMNFKYMPELDWKYSYPGVLIIMLLVAWVVLIFFKRKKLF
>NZ_LT906442.1|WP_058480746.1|3627849_3629961_-|hypothetical-protein
MGWFSSESISSGLSSVGSGLYGGAQWLWNNASPLKIVSGVFNYTANTAFTMVEQVLALRKAIPTLVNNPQAKKIVNGMAYVAVHDILPIVALNYANNSTQQYFRNGYNEDGAWYAPYMPYMSALGLLYYAYLAYNKAEGKRSTPMEAALTTLPLIPLVYMNSNSQQLVGNGYNQDMSWYAPYSLFLSGLTAVNYLVQSYTWREGAQATVRVAILDTMGPGAFNSNKTKLPKSICDDMDCNFKRKIKGWGREPFILIGNDFLTFGISKIPYVGGVASKVLSVYFNGRYILRVTTPELCERHKFLSMPQETGLSLGLTYYLTTELMDKVLEATVGMPPYLYYRALKHFLLLMHINVAAHMTFQQIDPKDATLTIDPLTVYERVNRFLVDVVFDGMMKRIPIDFKPDPNAPPLIPLSPALQFGTMLLNSDVERERKTAPGFFTKAKEKALVLVLPSMMRSADGFTTDPIVVMYWPSISKVAVNVVNFVDKYGHDRRVKTLAWAPKTTAEVINLKFGIPKKITRFILMLSHEQDFWNLMVAIKLWFLRHSGIKSEVKIEPLDDLGIHGERSLVPLPSGDAAKKPVIPAEQLQLIKGQDSVLPIEAVTQLTPFKGSKVSIDPDMLLVEPVPTGSTKQELSLFPIDPHLMSTKAEPESKNEMPIKRKVGIIVLNPDMFFYQKKSTGPIIEEITTNSTSESQVVDVNKMN
>NZ_LT906442.1|WP_058480747.1|3630036_3630669_-|endonuclease-III
MKKQTYQELFQRFKAQNPHPTTELIYSTPFELLIAVMLSAQATDVSVNKATDKLFKVANTAQGILDLGIDALKTYIKSIGLYNSKAQNVIKTCEILLNQYHGEVPEQREALEALPGVGRKTANVVLNTAFGQPTMAVDTHIFRVSNRIGLAKGKTPLEVEKGLLKNIPPDYLQDAHHWLILHGRYVCTARNPHCSGCLIRDLCEFDKKNL
>NZ_LT906442.1|WP_058480748.1|3630665_3631265_-|RnfABCDGE-type-electron-transport-complex-subunit-B
MASVKDIDALLPQTQCKECGFPGCLPYAEALAQGTAAINKCPPGGVETVKALGELLNIDSTPYLSEAIVNTRAPSVARIIEEDCIGCTKCIKACPVDAIVGSAKLMHSVIAHECTGCGLCVEPCPVDCIEMVSLPSTEYDKDLARQRYKAKQIRLLRDEHEQQQLYREKSKLVASAQDKEAKQRYILQALERAKAKRKT
>NZ_LT906442.1|WP_058480749.1|3631264_3633277_-|methionine--tRNA-ligase
MTTERKMLVTSALPYANGHLHLGHLVEHIQTDVWVRTHKMLGVECISVCGDDAHGTPIMLKAEQLGITPEALTAEIKLSHESDFNAFAIDYDSYHTTHSPENEALAGCIYEKLQANGDIVKKTIRQLYDPEKNMFLPDRYVKGTCPKCRTPDQYGDNCESCGATYSPAELIDPVSVISGAKPVEKESEHYFFDLPRYEDLLKKWTTNGHLQTEVTNKLNEWFAAGLKQWDISRDAPYFGFPIPGLKDKYFYVWLDAPIGYMASFKKYCADKGLSFDEFWDKDSKTELYHFVGKDIVYFHALFWPAMLAASGHRTPTAVYTHGFLTVEGQKMSKSRGTFIEARTYLAHLHPEYLRYYFAAKLNGRVDDLDLNFEDFTNRVNADLVGKVVNIASRCAGFINKRFDNRLSRTLSEPKLYEELLAVRESVIESFVSRDYARAIRQIMECADKVNQYIDANKPWVLAKDDSRLDEVHAICTMGINLFRVLMTYLKPVLPMMTASVERFLNCQPLTWSSIDKPLVNHQIEAFQPLMVRVEKEKIDAMLAASKESLVKTPTTSNPIEQQEDYISIDDFAKVDLRIAKIVKAEPVEGADKLLRLTLDIGEKQKQVFAGIKSAYAPEDLVGRLTVMVANLAPRTMRFGVSEGMVLAAGDGKGLFLLQPDEGALPGMKVK
>NZ_LT906442.1|WP_058480750.1|3633370_3633937_+|UbiX-family-flavin-prenyltransferase
MTNKQRIIIGISGSSGIIYGIRLLEALRKMPIETHLVVSKAGQLTRAYETDLSLTELKALADVYHRCSDLTASIASGSFKTMGMIIAPCSMKTLGEIAHGISSSLVSRAADVVLKERRRLVLLPRETPLHLNHLNNMVTITQMGGIICPPVPAFYNKPQSIDDIVNDTVGRVLDLFSLENELVKRWGE
>NZ_LT906442.1|WP_058480752.1|3634905_3635448_-|hypothetical-protein
MWEMFNKWFNRNKGYLATVFIISALTGIAVALLALFCPPVLAVFAGISVLGWTPLAFLSSLNVYLASVSLSSILTGCAFVVATGGAVVVKQLINIASHLYDLFTSKETVPHNLHPNLAEFIRAHLESGKSDELDDEEDYYDEFNGYDSSQSSMVEEPVTTPIMDVRDHDHTSNSGRSLTG
>NZ_LT906442.1|WP_058480753.1|3635514_3636192_-|7-cyano-7-deazaguanine-synthase-QueC
MKKAVVLLSGGLDSTTCLALAKSKGFACYALSFSYGQRHSTELKAAARIAKQMDVIEHKIVNLDTGLFGGSALTDQAIDVPEFKESMDIPVTYVPARNTIFLAMALGYAESIAARDIYIGASSVDYSHYPDCRPEFIHAFETLANLATKAGIEGDLFSIHAPLQHLSKVQTIQLGAQLNVDYSMTVSCYQANDAGEACGSCDSCTFRKRGFLGAGVVDPTKYRHD
>NZ_LT906442.1|WP_058481001.1|3636280_3637720_+|mannose-1-phosphate-guanylyltransferase/mannose-6-phosphate-isomerase
MTTTLYPVILAGGSGTRLWPLSRKNFPKQFLKLNGNLSLIQQTMNRVNRLANEQVILVSNEDHYFLCQEQLQEFSAPSTYLLEPCARNTAPAIACAAHYLCQQGGEQAVMLVLPSDHWIANDDSWLEAMSSGVEYASDHDAIVTFGIKPDSAHTGYGYIEAGATLSPSTFKVSSFREKPDLHSAEEFVNSGNYFWNSGMFVCKAGVYLQELRTFAPEIYQHSQEATNKAQGHHDFLRIDENSFTQCPDESIDYAIMEKTNKAVVIPVAMQWSDLGCWNAVADANSQDEQGNTIIGNAIAQDSQNCLINSENLLVTTVGIKDQIIIATNDAVLVANKQYSQQVKELVAALKKDHHHLTQDHQRVPRPWGYFEILAEGASFKVKRLMLKPGAKISLQKHQHRAEHWVVVAGEAEVINARDTIYLSKNQSTYIPPNTLHRLSNPGNEPLYVIEVQSGQYLGEDDIQRFDDMYLRKKENLVEV
>NZ_LT906442.1|WP_058480754.1|3638031_3640167_+|hypothetical-protein
MATSSLILRSFLEIEENGVNVQLSPEESAKNLLKHNKLLNGGDFLTPLSYYLSILDETDVTLIKYINNEIELDHQLHALRIAYLLLLAQQEYELNQRNFDNQKKYEEHKRKCIALIDTIVLNRTGIDNHNYSMPIASDGYPVKYLSIFLGKEFAESMVEMVDHQEVTKNIKAYMGAFNEKRLYWVWCSSLLKTLLAALPTDFFNVTQATTVIKAPDPYTGTLSWALYYFRFSINLTLLLKGTIRGDWLTPDEKKQTWTERFRTQWDKRKFALLNDSVWATGNLLCFFWLTGASLGPWGDLLTVVLLAFDVSLAIWELAEESTKHEKQLNDYNDELDKLDDELSDLLQEAAALDKTLKEEISTFVSPRPRGQNSREQQAGLYQLRPLLTNRLGKRKKLSEEIVEEEELQREVATYISDRQRDQHLQEHYAGLHQLRHLLTKRLGKDNKLAQQIFQIEMKRKSVLKEQDKCIREWATKKRSLIINLIYAISLLAAFFILTMPFIPMAGPALLATGIVGAVLCLAFTVIYNAVKGGMEIYKAKKSAREAREELNAKIDEFEMIKDSLSEDEKRLFFLEIKRLDAETEYQQKMVTYQSMQLVRSILIESLAPAIVFASFVFFPMGIGFAVVGAVIGLAIATHFLIDLNFKPKKDEILTFNENEFQGFLENPDSLKKMPKSSPRLFKESESNKEKSSSDIELEPLFRGSSGDLQVR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1262946-1262979	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1263100-1263133	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1263254-1263287	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1263332-1263365	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045993-2046026	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2682992-2683025	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2683070-2683103	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	3627446-3627479	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	3627522-3627555	0	1.0
NZ_LT906442_5	5.1\|3625347\|46\|NZ_LT906442\|CRISPRCasFinder	3625347-3625392	46	NZ_LT906442.1	3627466-3627511	0	1.0
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	502540-502573	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	502618-502651	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1263022-1263055	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1263178-1263211	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1263410-1263443	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1313439-1313472	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1313517-1313550	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1313595-1313628	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1710286-1710319	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1710364-1710397	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045462-2045495	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045540-2045573	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045618-2045651	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045696-2045729	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045774-2045807	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045852-2045885	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2503148-2503181	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2515949-2515982	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2516025-2516058	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2516181-2516214	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2516257-2516290	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2683148-2683181	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2683226-2683259	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2683381-2683414	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2906812-2906845	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	3519582-3519615	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	3519816-3519849	1	0.971
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	3627600-3627633	1	0.971
NZ_LT906442_2	2.1\|959281\|46\|NZ_LT906442\|CRISPRCasFinder	959281-959326	46	NZ_LT906442.1	2642926-2642971	1	0.978
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	502696-502729	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1313673-1313706	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1313751-1313784	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	1710442-1710475	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2045385-2045418	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2515871-2515904	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2516103-2516136	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2604997-2605030	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605153-2605186	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605231-2605264	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605309-2605342	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605387-2605420	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605465-2605498	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605621-2605654	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605699-2605732	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605777-2605810	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2605855-2605888	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	2906734-2906767	2	0.941
NZ_LT906442_1	1.1\|98451\|34\|NZ_LT906442\|CRISPRCasFinder	98451-98484	34	NZ_LT906442.1	3519738-3519771	2	0.941

1. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1262946-1262979, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

2. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1263100-1263133, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

3. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1263254-1263287, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

4. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1263332-1263365, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

5. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045993-2046026, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

6. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2682992-2683025, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

7. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2683070-2683103, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

8. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 3627446-3627479, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

9. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 3627522-3627555, mismatch: 0, identity: 1.0

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctgctg	Protospacer
**********************************

10. spacer 5.1|3625347|46|NZ_LT906442|CRISPRCasFinder matches to position: 3627466-3627511, mismatch: 0, identity: 1.0

ctcactccctgctgtgactagcatttgattcaaacagcaaagaagg	CRISPR spacer
ctcactccctgctgtgactagcatttgattcaaacagcaaagaagg	Protospacer
**********************************************

11. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 502540-502573, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcactccctcctg	Protospacer
****************************** ***

12. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 502618-502651, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

13. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1263022-1263055, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

14. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1263178-1263211, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

15. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1263410-1263443, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

16. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1313439-1313472, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

17. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1313517-1313550, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

18. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1313595-1313628, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

19. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1710286-1710319, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

20. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1710364-1710397, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

21. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045462-2045495, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

22. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045540-2045573, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

23. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045618-2045651, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

24. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045696-2045729, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

25. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045774-2045807, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

26. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045852-2045885, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

27. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2503148-2503181, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgactcaatccctgctg	Protospacer
************************ *********

28. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2515949-2515982, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

29. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2516025-2516058, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

30. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2516181-2516214, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

31. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2516257-2516290, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

32. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2683148-2683181, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

33. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2683226-2683259, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

34. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2683381-2683414, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccaactcactccctgctg	Protospacer
******************.***************

35. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2906812-2906845, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

36. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 3519582-3519615, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

37. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 3519816-3519849, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgctg	Protospacer
********************.*************

38. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 3627600-3627633, mismatch: 1, identity: 0.971

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtaagcaagcggaccgactcactccctgctg	Protospacer
***** ****************************

39. spacer 2.1|959281|46|NZ_LT906442|CRISPRCasFinder matches to position: 2642926-2642971, mismatch: 1, identity: 0.978

ctcactcccttctatgactgggatttgattcagacagcaaagaagg	CRISPR spacer
ctcactcccttctatgactgggatttgattgagacagcaaagaagg	Protospacer
****************************** ***************

40. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 502696-502729, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgacccactccctcctg	Protospacer
*********************.******** ***

41. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1313673-1313706, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggatcgattcactccctgctg	Protospacer
****************.***.*************

42. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1313751-1313784, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggatcgattcactccctgctg	Protospacer
****************.***.*************

43. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 1710442-1710475, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctgttg	Protospacer
********************.**********.**

44. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2045385-2045418, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcagaccaactcactccctgctg	Protospacer
*************.****.***************

45. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2515871-2515904, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcattccctgctg	Protospacer
********************.***.*********

46. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2516103-2516136, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcattccctgctg	Protospacer
********************.***.*********

47. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2604997-2605030, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

48. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605153-2605186, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

49. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605231-2605264, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

50. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605309-2605342, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

51. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605387-2605420, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

52. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605465-2605498, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

53. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605621-2605654, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

54. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605699-2605732, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

55. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605777-2605810, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

56. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2605855-2605888, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcacaccctgctg	Protospacer
********************.**** ********

57. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 2906734-2906767, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggaccgattcactccctactg	Protospacer
********************.*********.***

58. spacer 1.1|98451|34|NZ_LT906442|CRISPRCasFinder matches to position: 3519738-3519771, mismatch: 2, identity: 0.941

cgcgtcagcaagcggaccgactcactccctgctg	CRISPR spacer
cgcgtcagcaagcggtccgattcactccctgctg	Protospacer
*************** ****.*************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906442_3	3.1\|2045903\|32\|NZ_LT906442\|CRISPRCasFinder	2045903-2045934	32	NZ_CP028722	Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence	11937-11968	10	0.688

1. spacer 3.1|2045903|32|NZ_LT906442|CRISPRCasFinder matches to NZ_CP028722 (Enterococcus faecalis strain CVM N48037F plasmid pN48037F-2, complete sequence) position: , mismatch: 10, identity: 0.688

gacagcaaaaaagaaaccgagcaagcggacca	CRISPR spacer
gactgccaaaaagaaaccgagcaaaaaagaag	Protospacer
*** ** *****************. ...  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

260192 : 325714

Virus_Rctr41k(16.67%)

integrase,transposase

attL 300510:300527|attR 324676:324693

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058479698.1\|260192_261203_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	6.2e-08	22.9
WP_058479701.1\|262141_263758_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJJ6	Virus_Rctr41k	1.1e-06	22.3
WP_058479702.1\|263852_264179_+	DUF1016 family protein	NA	NA	NA	NA
WP_058479772.1\|264940_265900_-	arsenic resistance protein	NA	NA	NA	NA
WP_058479703.1\|266251_267946_-	EAL domain-containing protein	G3MA91	Bacillus_virus	9.4e-25	35.5
WP_058479704.1\|268571_269090_-	GyrI-like domain-containing protein	NA	NA	NA	NA
WP_080445425.1\|269096_269753_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_058479706.1\|269706_270219_-	AAA family ATPase	NA	NA	NA	NA
WP_058479707.1\|270218_270806_-	recombinase family protein	A0A219YA40	Aeromonas_phage	1.7e-21	38.0
WP_058479708.1\|270933_273936_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	3.0e-50	22.2
WP_058479709.1\|273956_276179_-	DUF4158 domain-containing protein	NA	NA	NA	NA
WP_058479710.1\|276327_276912_+	recombinase family protein	E5FFF9	Burkholderia_phage	3.8e-42	50.5
WP_058479711.1\|276997_277849_+	DUF1189 family protein	NA	NA	NA	NA
WP_058479712.1\|277838_278588_-	hypothetical protein	NA	NA	NA	NA
WP_058479713.1\|278732_279647_+	hypothetical protein	NA	NA	NA	NA
WP_058479714.1\|279716_280883_-	hypothetical protein	NA	NA	NA	NA
WP_058479715.1\|281239_282013_+	hypothetical protein	NA	NA	NA	NA
WP_058479716.1\|283564_283810_+	hypothetical protein	NA	NA	NA	NA
WP_058479773.1\|283897_284518_-	hypothetical protein	NA	NA	NA	NA
WP_058479717.1\|284871_285063_-	hypothetical protein	NA	NA	NA	NA
WP_058479718.1\|285151_285607_-	hypothetical protein	NA	NA	NA	NA
WP_157066262.1\|285646_285805_-	hypothetical protein	NA	NA	NA	NA
WP_083500039.1\|285845_286577_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_058479719.1\|286760_288008_+	TolC family protein	NA	NA	NA	NA
WP_058479720.1\|288004_289243_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_058479721.1\|289252_292399_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_058479722.1\|292472_292769_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_058479723.1\|292858_295048_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.3e-148	43.8
WP_058479724.1\|295091_295421_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_058479725.1\|295483_295861_+	response regulator	NA	NA	NA	NA
WP_165481844.1\|295963_296128_+	hypothetical protein	NA	NA	NA	NA
WP_058479726.1\|296417_297323_+	cation transporter	NA	NA	NA	NA
WP_058479775.1\|297948_298155_+	cold-shock protein	Q9AZD3	Lactococcus_phage	6.5e-13	63.3
WP_058479727.1\|298247_298991_+	acetoacetyl-CoA reductase	NA	NA	NA	NA
WP_157066263.1\|299602_299752_+	hypothetical protein	NA	NA	NA	NA
WP_058479729.1\|300357_300627_-	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA
300510:300527	attL	NA	NA	NA	NA
WP_058479730.1\|300630_300888_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA
WP_058479776.1\|301046_302069_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_028383800.1\|302140_302485_+	hypothetical protein	NA	NA	NA	NA
WP_028383801.1\|302664_303045_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_015444995.1\|303031_303355_+	DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_058479731.1\|303461_303971_-	hypothetical protein	NA	NA	NA	NA
WP_058479732.1\|304098_304893_-	hypothetical protein	NA	NA	NA	NA
WP_058479733.1\|305061_305856_-	DUF945 domain-containing protein	NA	NA	NA	NA
WP_157066264.1\|305933_306101_-	hypothetical protein	NA	NA	NA	NA
WP_058479734.1\|306160_306385_-	hypothetical protein	NA	NA	NA	NA
WP_058479735.1\|306461_306887_-	single-stranded DNA-binding protein	A0A291LCB6	Klebsiella_phage	7.3e-19	47.2
WP_058479736.1\|307012_307222_-	hypothetical protein	NA	NA	NA	NA
WP_006871718.1\|307307_307667_-	hypothetical protein	NA	NA	NA	NA
WP_058479738.1\|308103_309003_-\|integrase	integrase	NA	NA	NA	NA
WP_058479739.1\|309093_309381_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058479740.1\|309634_318385_-	type I polyketide synthase	A0A1V0SBX8	Catovirus	3.5e-14	22.8
WP_058479741.1\|318517_319129_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_058479742.1\|319551_320313_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_058479743.1\|320387_321269_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_083500040.1\|321554_322709_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.4e-16	27.2
WP_058479745.1\|322705_325714_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	62.4
324676:324693	attR	NA	NA	NA	NA

DBSCAN-SWA_2

331268 : 378344

Acidithiobacillus_phage(28.57%)

integrase,transposase

attL 325665:325681|attR 381846:381862

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
325665:325681	attL	NA	NA	NA	NA
WP_095197465.1\|331268_332431_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.6e-62	43.9
WP_058479798.1\|332718_332946_+	hypothetical protein	NA	NA	NA	NA
WP_058479799.1\|333125_333455_-	DUF1232 domain-containing protein	NA	NA	NA	NA
WP_095197465.1\|333494_334656_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.6e-62	43.9
WP_058481846.1\|334973_336032_-	DMT family transporter	NA	NA	NA	NA
WP_058481845.1\|336287_336731_-	PepSY domain-containing protein	NA	NA	NA	NA
WP_083500138.1\|336855_337560_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_058481844.1\|339004_340249_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_058481843.1\|340258_343408_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_058481841.1\|343788_344085_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_058481840.1\|344086_344356_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_058481839.1\|344352_346503_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	5.0e-148	43.9
WP_058481838.1\|346545_346947_+	response regulator	NA	NA	NA	NA
WP_058481837.1\|347167_347530_+	DUF4156 domain-containing protein	NA	NA	NA	NA
WP_058481834.1\|349261_349456_-	hypothetical protein	NA	NA	NA	NA
WP_058481833.1\|349442_350027_-	AAA family ATPase	NA	NA	NA	NA
WP_058481832.1\|350066_353162_-\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_058481831.1\|353292_353895_+	recombinase family protein	H2A0H0	Bacteroides_phage	5.9e-30	37.9
WP_095197467.1\|354053_354806_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.1e-65	52.9
WP_095197468.1\|354833_356381_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	8.9e-131	46.4
WP_129462641.1\|356573_356972_+	hypothetical protein	NA	NA	NA	NA
WP_061634410.1\|357008_357371_+	hypothetical protein	NA	NA	NA	NA
WP_095197465.1\|357416_358578_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	6.6e-62	43.9
WP_083500043.1\|358753_360211_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	4.5e-100	40.9
WP_083500044.1\|360226_361267_+\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	8.7e-122	60.5
WP_058479869.1\|361313_361790_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_133141282.1\|362177_362594_-	hypothetical protein	NA	NA	NA	NA
WP_058479872.1\|362629_363214_-\|integrase	site-specific integrase	K4K327	Caulobacter_virus	7.7e-11	31.0
WP_058479871.1\|363437_363944_+	hypothetical protein	NA	NA	NA	NA
WP_058480301.1\|364222_365764_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	6.3e-137	49.5
WP_058480302.1\|365780_366539_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	7.9e-56	49.0
WP_058480306.1\|367349_367985_+	hypothetical protein	NA	NA	NA	NA
WP_058480307.1\|368013_368343_-	hypothetical protein	NA	NA	NA	NA
WP_157066274.1\|368383_368536_-	hypothetical protein	NA	NA	NA	NA
WP_083500068.1\|368574_368934_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_058480309.1\|369402_370455_+	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	9.2e-87	47.0
WP_058480310.1\|370511_371747_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_058480311.1\|372067_372853_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_058480312.1\|373797_374214_-	hypothetical protein	NA	NA	NA	NA
WP_058480313.1\|374284_375076_-	DUF932 domain-containing protein	NA	NA	NA	NA
WP_157066275.1\|375155_375323_-	hypothetical protein	NA	NA	NA	NA
WP_058480314.1\|375395_375620_-	hypothetical protein	NA	NA	NA	NA
WP_058480315.1\|375696_376122_-	single-stranded DNA-binding protein	A0A291LCB6	Klebsiella_phage	2.8e-18	47.5
WP_058480316.1\|376247_376457_-	hypothetical protein	NA	NA	NA	NA
WP_058480318.1\|377444_378344_-\|integrase	integrase	NA	NA	NA	NA
381846:381862	attR	NA	NA	NA	NA

DBSCAN-SWA_3

781428 : 822370

Cedratvirus(20.0%)

protease,integrase,transposase,tRNA

attL 778222:778236|attR 823975:823989

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
778222:778236	attL	NA	NA	NA	NA
WP_058481146.1\|781428_782103_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_058481147.1\|782113_783244_+	M42 family metallopeptidase	NA	NA	NA	NA
WP_058481148.1\|783323_784811_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_058481149.1\|784887_786030_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_058481150.1\|786032_786947_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_058481151.1\|787077_788373_+	adenylosuccinate synthase	A0A285PX35	Cedratvirus	2.3e-71	35.6
WP_058481152.1\|788604_790089_-	adenosine deaminase	NA	NA	NA	NA
WP_058481153.1\|790271_790910_+	hypothetical protein	NA	NA	NA	NA
WP_058481154.1\|791010_792357_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	7.7e-22	27.2
WP_058481155.1\|792449_793592_-	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_058481156.1\|793578_795123_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_058481157.1\|795550_797200_+	hypothetical protein	NA	NA	NA	NA
WP_058481158.1\|797337_798375_+	hypothetical protein	NA	NA	NA	NA
WP_058481159.1\|798386_798704_-	hypothetical protein	NA	NA	NA	NA
WP_058481276.1\|798883_799600_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	9.8e-24	40.0
WP_058481160.1\|799610_800408_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_058481161.1\|800439_801792_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_058481162.1\|801980_804293_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_058481163.1\|804516_805017_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_058481164.1\|805034_806051_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_058481165.1\|806124_806577_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_058481166.1\|806573_807344_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_058481167.1\|807347_807749_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_058481168.1\|807763_809041_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.4e-94	45.2
WP_058481169.1\|809145_809373_+	hypothetical protein	NA	NA	NA	NA
WP_095197487.1\|809491_809803_+\|transposase	transposase	NA	NA	NA	NA
WP_157737804.1\|809795_810275_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_083500099.1\|810298_810640_-	endonuclease domain-containing protein	NA	NA	NA	NA
WP_058481190.1\|810985_811522_+	hypothetical protein	NA	NA	NA	NA
WP_058481191.1\|811555_814453_-	hypothetical protein	NA	NA	NA	NA
WP_058481192.1\|815096_818705_+	hypothetical protein	NA	NA	NA	NA
WP_058481193.1\|818981_819740_+	hypothetical protein	NA	NA	NA	NA
WP_058481194.1\|820409_821144_+	Abi family protein	NA	NA	NA	NA
WP_058481195.1\|821146_822370_+\|integrase	site-specific integrase	Q9T1P3	Pseudomonas_phage	6.4e-23	28.7
823975:823989	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1219651 : 1226351

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058479159.1\|1219651_1220425_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.8e-61	51.4
WP_058479160.1\|1220417_1221452_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	2.5e-76	46.3
WP_058479161.1\|1221441_1222008_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.2e-54	51.3
WP_058479162.1\|1222052_1222778_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-20	27.4
WP_058479163.1\|1222774_1223284_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_058479164.1\|1223264_1223837_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_058479165.1\|1223833_1224361_-	HAD-IIIA family hydrolase	A0A140XBD6	Dickeya_phage	1.6e-23	43.9
WP_058479166.1\|1224372_1225335_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	9.4e-38	34.0
WP_058479167.1\|1225553_1226351_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	2.1e-19	28.8

DBSCAN-SWA_5

1466304 : 1473642

Staphylococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058481178.1\|1466304_1467363_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.4e-29	28.8
WP_058481177.1\|1467362_1467977_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.7e-21	35.1
WP_058481176.1\|1467973_1469182_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.6e-98	48.4
WP_058481175.1\|1469189_1469657_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.3e-21	48.6
WP_058481174.1\|1469730_1470981_-	serine hydrolase	G1DB24	Mycobacterium_phage	7.4e-19	27.1
WP_058481173.1\|1471183_1472821_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.4e-158	53.9
WP_058481172.1\|1472817_1473642_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.3e-53	42.5

DBSCAN-SWA_6

2407713 : 2417534

Bacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_058479383.1\|2407713_2409399_-	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	3.8e-18	33.2
WP_058479384.1\|2409616_2410624_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_058479385.1\|2410670_2411966_-	adenosylhomocysteinase	S4VPF6	Pandoravirus	1.1e-46	31.1
WP_058479386.1\|2411982_2413131_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.4e-126	57.7
WP_058479387.1\|2413130_2414255_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.3e-51	35.4
WP_058479388.1\|2414316_2415456_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.3e-22	27.9
WP_058479389.1\|2415593_2417534_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	3.5e-148	49.7

DBSCAN-SWA_7

2760491 : 2767958

Pseudomonas_phage(33.33%)

integrase,tRNA

attL 2757071:2757084|attR 2769311:2769324

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2757071:2757084	attL	NA	NA	NA	NA
WP_058479885.1\|2760491_2761499_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.8e-93	51.3
WP_058479884.1\|2761682_2761922_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_058479883.1\|2762112_2762556_+	GatB/YqeY domain-containing protein	A0A0K2FLI9	Brevibacillus_phage	4.6e-08	33.3
WP_058479882.1\|2762564_2764298_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.1e-60	35.4
WP_058479881.1\|2764384_2766259_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	3.8e-35	32.8
WP_019234708.1\|2766603_2767515_-\|integrase	tyrosine-type recombinase/integrase	A0A059VF45	Pseudomonas_phage	3.6e-63	43.6
WP_019234707.1\|2767580_2767958_-	hypothetical protein	A0A059VFY6	Pseudomonas_phage	4.4e-15	37.3
2769311:2769324	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906442

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection