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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT906477 Clostridium cochlearium strain NCTC13027 chromosome 1 6 crisprs WYL,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,RT,cas8b1,csm5gr7,csm4gr5,csm3gr7,cas10,csa3 0 20 10 0

Results visualization

1. NZ_LT906477
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906477_1 916184-919111 Unclear NA
44 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906477_2 979067-981180 TypeI-B NA
31 spacers
RT,cas6,cas8b1,cas7,cas5,cas3,cas4,cas1

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906477_3 992860-993353 TypeI-B NA
7 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906477_4 1192056-1192479 TypeIII NA
6 spacers
cas6,csm5gr7,csm4gr5,csm3gr7,cas10

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906477_5 1406477-1406560 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906477_6 1466841-1466922 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT906477_1 1.4|916408|36|NZ_LT906477|CRISPRCasFinder,CRT 916408-916443 36 KM983333 Clostridium phage phiCTC2A, complete genome 27893-27928 1 0.972
NZ_LT906477_1 1.4|916408|36|NZ_LT906477|CRISPRCasFinder,CRT 916408-916443 36 KM983330 Clostridium phage phiCT19406A, complete genome 27893-27928 1 0.972
NZ_LT906477_1 1.7|916605|37|NZ_LT906477|CRISPRCasFinder,CRT 916605-916641 37 KM983329 Clostridium phage phiCT9441A, complete genome 1316-1352 1 0.973
NZ_LT906477_1 1.50|916410|36|NZ_LT906477|PILER-CR 916410-916445 36 KM983333 Clostridium phage phiCTC2A, complete genome 27893-27928 1 0.972
NZ_LT906477_1 1.50|916410|36|NZ_LT906477|PILER-CR 916410-916445 36 KM983330 Clostridium phage phiCT19406A, complete genome 27893-27928 1 0.972
NZ_LT906477_1 1.53|916607|37|NZ_LT906477|PILER-CR 916607-916643 37 KM983329 Clostridium phage phiCT9441A, complete genome 1316-1352 1 0.973
NZ_LT906477_2 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979972-980009 38 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 33898-33935 2 0.947
NZ_LT906477_2 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979972-980009 38 NZ_CP013684 Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence 70298-70335 2 0.947
NZ_LT906477_2 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979972-980009 38 NC_025146 Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111 48147-48184 2 0.947
NZ_LT906477_2 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979972-980009 38 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 78224-78261 2 0.947
NZ_LT906477_3 3.4|993091|36|NZ_LT906477|CRISPRCasFinder,CRT 993091-993126 36 NC_022778 Clostridium tetani 12124569 plasmid p12124569, complete sequence 20316-20351 2 0.944
NZ_LT906477_3 3.4|993091|36|NZ_LT906477|CRISPRCasFinder,CRT 993091-993126 36 NC_004565 Clostridium tetani E88 plasmid pE88, complete sequence 29667-29702 2 0.944
NZ_LT906477_1 1.31|918189|36|NZ_LT906477|CRISPRCasFinder,CRT 918189-918224 36 NC_029006 Clostridium phage phiCT19406C, complete genome 2525-2560 3 0.917
NZ_LT906477_1 1.77|918191|36|NZ_LT906477|PILER-CR 918191-918226 36 NC_029006 Clostridium phage phiCT19406C, complete genome 2525-2560 3 0.917
NZ_LT906477_3 3.11|993091|37|NZ_LT906477|PILER-CR 993091-993127 37 NC_022778 Clostridium tetani 12124569 plasmid p12124569, complete sequence 20315-20351 3 0.919
NZ_LT906477_3 3.11|993091|37|NZ_LT906477|PILER-CR 993091-993127 37 NC_004565 Clostridium tetani E88 plasmid pE88, complete sequence 29666-29702 3 0.919
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 177682-177716 4 0.886
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 NC_007581 Clostridium phage c-st, complete genome 136943-136977 4 0.886
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 NC_007581 Clostridium phage c-st, complete genome 162211-162245 4 0.886
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 ACSJ01000017 Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence 60512-60546 4 0.886
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 AP008983 Clostridium phage c-st genomic DNA, complete genome 136943-136977 4 0.886
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 AP008983 Clostridium phage c-st genomic DNA, complete genome 162211-162245 4 0.886
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 NZ_CP026601 Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence 86240-86274 5 0.857
NZ_LT906477_1 1.5|916473|36|NZ_LT906477|CRISPRCasFinder,CRT 916473-916508 36 KM983333 Clostridium phage phiCTC2A, complete genome 38252-38287 6 0.833
NZ_LT906477_1 1.5|916473|36|NZ_LT906477|CRISPRCasFinder,CRT 916473-916508 36 KM983330 Clostridium phage phiCT19406A, complete genome 38252-38287 6 0.833
NZ_LT906477_1 1.51|916475|36|NZ_LT906477|PILER-CR 916475-916510 36 KM983333 Clostridium phage phiCTC2A, complete genome 38252-38287 6 0.833
NZ_LT906477_1 1.51|916475|36|NZ_LT906477|PILER-CR 916475-916510 36 KM983330 Clostridium phage phiCT19406A, complete genome 38252-38287 6 0.833
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 NZ_CP024444 Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence 80173-80207 7 0.8
NZ_LT906477_2 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979369-979403 35 NZ_CP024446 Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence 22112-22146 7 0.8
NZ_LT906477_2 2.13|979906|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979906-979941 36 NZ_CP012423 Spiroplasma kunkelii CR2-3x plasmid pSKU226, complete sequence 21681-21716 8 0.778
NZ_LT906477_2 2.29|980979|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 980979-981013 35 MT701590 Klebsiella phage Miami, complete genome 85206-85240 8 0.771
NZ_LT906477_5 5.1|1406504|30|NZ_LT906477|CRISPRCasFinder 1406504-1406533 30 MN694310 Marine virus AFVG_250M603, complete genome 29808-29837 8 0.733
NZ_LT906477_1 1.10|916802|38|NZ_LT906477|CRISPRCasFinder,CRT 916802-916839 38 NC_007581 Clostridium phage c-st, complete genome 156590-156627 9 0.763
NZ_LT906477_1 1.10|916802|38|NZ_LT906477|CRISPRCasFinder,CRT 916802-916839 38 AP008983 Clostridium phage c-st genomic DNA, complete genome 156590-156627 9 0.763
NZ_LT906477_1 1.56|916804|38|NZ_LT906477|PILER-CR 916804-916841 38 NC_007581 Clostridium phage c-st, complete genome 156590-156627 9 0.763
NZ_LT906477_1 1.56|916804|38|NZ_LT906477|PILER-CR 916804-916841 38 AP008983 Clostridium phage c-st genomic DNA, complete genome 156590-156627 9 0.763
NZ_LT906477_2 2.25|980711|37|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 980711-980747 37 MF403008 Agrobacterium phage Atu_ph07, complete genome 402811-402847 9 0.757
NZ_LT906477_2 2.9|979637|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979637-979672 36 NZ_LN831028 Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence 11453-11488 10 0.722
NZ_LT906477_2 2.9|979637|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 979637-979672 36 NZ_CP029750 Staphylococcus aureus strain Smith plasmid pSS41, complete sequence 40355-40390 10 0.722
NZ_LT906477_4 4.6|1192415|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT 1192415-1192450 36 NZ_CP039220 Piscirickettsia salmonis strain NVI 5692 plasmid unnamed1, complete sequence 66065-66100 10 0.722

1. spacer 1.4|916408|36|NZ_LT906477|CRISPRCasFinder,CRT matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 1, identity: 0.972

tctattgcagcaggtggatttttagcaatggcaact	CRISPR spacer
tctattgcagcaggtggatttttaggaatggcaact	Protospacer
************************* **********

2. spacer 1.4|916408|36|NZ_LT906477|CRISPRCasFinder,CRT matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 1, identity: 0.972

tctattgcagcaggtggatttttagcaatggcaact	CRISPR spacer
tctattgcagcaggtggatttttaggaatggcaact	Protospacer
************************* **********

3. spacer 1.7|916605|37|NZ_LT906477|CRISPRCasFinder,CRT matches to KM983329 (Clostridium phage phiCT9441A, complete genome) position: , mismatch: 1, identity: 0.973

gtatattggttattttcaacttcttttaagagttcta	CRISPR spacer
gtatattgtttattttcaacttcttttaagagttcta	Protospacer
******** ****************************

4. spacer 1.50|916410|36|NZ_LT906477|PILER-CR matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 1, identity: 0.972

tctattgcagcaggtggatttttagcaatggcaact	CRISPR spacer
tctattgcagcaggtggatttttaggaatggcaact	Protospacer
************************* **********

5. spacer 1.50|916410|36|NZ_LT906477|PILER-CR matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 1, identity: 0.972

tctattgcagcaggtggatttttagcaatggcaact	CRISPR spacer
tctattgcagcaggtggatttttaggaatggcaact	Protospacer
************************* **********

6. spacer 1.53|916607|37|NZ_LT906477|PILER-CR matches to KM983329 (Clostridium phage phiCT9441A, complete genome) position: , mismatch: 1, identity: 0.973

gtatattggttattttcaacttcttttaagagttcta	CRISPR spacer
gtatattgtttattttcaacttcttttaagagttcta	Protospacer
******** ****************************

7. spacer 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 2, identity: 0.947

gaacaatgttggagtataaagctaattggtatggaaga	CRISPR spacer
gaacaatgttagaatataaagctaattggtatggaaga	Protospacer
**********.**.************************

8. spacer 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013684 (Clostridium botulinum strain AM282 plasmid pRSJ10_1, complete sequence) position: , mismatch: 2, identity: 0.947

gaacaatgttggagtataaagctaattggtatggaaga	CRISPR spacer
gaacaatgttagaatataaagctaattggtatggaaga	Protospacer
**********.**.************************

9. spacer 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NC_025146 (Clostridium botulinum plasmid pCB111 DNA, complete sequence, strain: 111) position: , mismatch: 2, identity: 0.947

gaacaatgttggagtataaagctaattggtatggaaga	CRISPR spacer
gaacaatgttagaatataaagctaattggtatggaaga	Protospacer
**********.**.************************

10. spacer 2.14|979972|38|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 2, identity: 0.947

gaacaatgttggagtataaagctaattggtatggaaga	CRISPR spacer
gaacaatgttagaatataaagctaattggtatggaaga	Protospacer
**********.**.************************

11. spacer 3.4|993091|36|NZ_LT906477|CRISPRCasFinder,CRT matches to NC_022778 (Clostridium tetani 12124569 plasmid p12124569, complete sequence) position: , mismatch: 2, identity: 0.944

ttaaatacataatctatttttttgaatctgtttctt	CRISPR spacer
ttaaatacataatctatttttttaaatctatttctt	Protospacer
***********************.*****.******

12. spacer 3.4|993091|36|NZ_LT906477|CRISPRCasFinder,CRT matches to NC_004565 (Clostridium tetani E88 plasmid pE88, complete sequence) position: , mismatch: 2, identity: 0.944

ttaaatacataatctatttttttgaatctgtttctt	CRISPR spacer
ttaaatacataatctatttttttaaatctatttctt	Protospacer
***********************.*****.******

13. spacer 1.31|918189|36|NZ_LT906477|CRISPRCasFinder,CRT matches to NC_029006 (Clostridium phage phiCT19406C, complete genome) position: , mismatch: 3, identity: 0.917

tgtctatattgtaaaataacttttcaaatttgaaaa	CRISPR spacer
tgtctatactgtaaaataacttttcaaatttgggaa	Protospacer
********.***********************..**

14. spacer 1.77|918191|36|NZ_LT906477|PILER-CR matches to NC_029006 (Clostridium phage phiCT19406C, complete genome) position: , mismatch: 3, identity: 0.917

tgtctatattgtaaaataacttttcaaatttgaaaa	CRISPR spacer
tgtctatactgtaaaataacttttcaaatttgggaa	Protospacer
********.***********************..**

15. spacer 3.11|993091|37|NZ_LT906477|PILER-CR matches to NC_022778 (Clostridium tetani 12124569 plasmid p12124569, complete sequence) position: , mismatch: 3, identity: 0.919

ttaaatacataatctatttttttgaatctgtttcttg	CRISPR spacer
ttaaatacataatctatttttttaaatctatttctta	Protospacer
***********************.*****.******.

16. spacer 3.11|993091|37|NZ_LT906477|PILER-CR matches to NC_004565 (Clostridium tetani E88 plasmid pE88, complete sequence) position: , mismatch: 3, identity: 0.919

ttaaatacataatctatttttttgaatctgtttcttg	CRISPR spacer
ttaaatacataatctatttttttaaatctatttctta	Protospacer
***********************.*****.******.

17. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 4, identity: 0.886

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
ttgcaaaatctttaattcctaagtcaattcctatc	Protospacer
************* * *****************..

18. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 4, identity: 0.886

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
ttgcaaaatcttttagtcctaagtcaatcccaatt	Protospacer
***************.************.** *.*

19. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 4, identity: 0.886

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
ttgcaaaatcttttagtcctaagtcaatcccaatt	Protospacer
***************.************.** *.*

20. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to ACSJ01000017 (Clostridium phage D-1873 CLG.Contig173, whole genome shotgun sequence) position: , mismatch: 4, identity: 0.886

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
ttgcaaaatcttttagtcctaagtcaatcccaatt	Protospacer
***************.************.** *.*

21. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 4, identity: 0.886

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
ttgcaaaatcttttagtcctaagtcaatcccaatt	Protospacer
***************.************.** *.*

22. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 4, identity: 0.886

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
ttgcaaaatcttttagtcctaagtcaatcccaatt	Protospacer
***************.************.** *.*

23. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.857

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
ttgcaaaatcttttattcctaagtcaatcccaata	Protospacer
*************** ************.** *. 

24. spacer 1.5|916473|36|NZ_LT906477|CRISPRCasFinder,CRT matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 6, identity: 0.833

actggtgatatgaatttaagtaatgtagaacacatt	CRISPR spacer
aagtgtgatatgaatttaagtaatgtagaaaatata	Protospacer
*   ************************** *.** 

25. spacer 1.5|916473|36|NZ_LT906477|CRISPRCasFinder,CRT matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 6, identity: 0.833

actggtgatatgaatttaagtaatgtagaacacatt	CRISPR spacer
aagtgtgatatgaatttaagtaatgtagaaaatata	Protospacer
*   ************************** *.** 

26. spacer 1.51|916475|36|NZ_LT906477|PILER-CR matches to KM983333 (Clostridium phage phiCTC2A, complete genome) position: , mismatch: 6, identity: 0.833

actggtgatatgaatttaagtaatgtagaacacatt	CRISPR spacer
aagtgtgatatgaatttaagtaatgtagaaaatata	Protospacer
*   ************************** *.** 

27. spacer 1.51|916475|36|NZ_LT906477|PILER-CR matches to KM983330 (Clostridium phage phiCT19406A, complete genome) position: , mismatch: 6, identity: 0.833

actggtgatatgaatttaagtaatgtagaacacatt	CRISPR spacer
aagtgtgatatgaatttaagtaatgtagaaaatata	Protospacer
*   ************************** *.** 

28. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024444 (Moraxella osloensis strain NP7 plasmid pNP7-1, complete sequence) position: , mismatch: 7, identity: 0.8

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
tggcactgtcttttaagcctaagtcaatgcctacg	Protospacer
* ***  .******** *********** ***** 

29. spacer 2.5|979369|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024446 (Moraxella osloensis strain NP7 plasmid pNP7-3, complete sequence) position: , mismatch: 7, identity: 0.8

ttgcaaaatcttttaatcctaagtcaattcctact	CRISPR spacer
tggcactgtcttttaagcctaagtcaatgcctacg	Protospacer
* ***  .******** *********** ***** 

30. spacer 2.13|979906|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012423 (Spiroplasma kunkelii CR2-3x plasmid pSKU226, complete sequence) position: , mismatch: 8, identity: 0.778

tccggaattttagcacaggataataaaaaagtttta	CRISPR spacer
gcctataaattagcagatgataataaaaaagtttta	Protospacer
 ** . *  ****** * ******************

31. spacer 2.29|980979|35|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to MT701590 (Klebsiella phage Miami, complete genome) position: , mismatch: 8, identity: 0.771

ccagcttgg--ttaacattaaacaattaaaaataaag	CRISPR spacer
--atcctaggtttaacattaattaattaaaaataaat	Protospacer
  * *.*.*  ********** .************* 

32. spacer 5.1|1406504|30|NZ_LT906477|CRISPRCasFinder matches to MN694310 (Marine virus AFVG_250M603, complete genome) position: , mismatch: 8, identity: 0.733

atcttctacatgggatgtattttctttagc	CRISPR spacer
gtaggctagatgggatgtatattctttatt	Protospacer
.*   *** *********** ******* .

33. spacer 1.10|916802|38|NZ_LT906477|CRISPRCasFinder,CRT matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 9, identity: 0.763

ccaaagatagcagaaatagaagaatttaaa-gaaataat	CRISPR spacer
ttatggatagcagaaaaagaagaatttaaacaagatga-	Protospacer
..* .*********** ************* .*.**.* 

34. spacer 1.10|916802|38|NZ_LT906477|CRISPRCasFinder,CRT matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 9, identity: 0.763

ccaaagatagcagaaatagaagaatttaaa-gaaataat	CRISPR spacer
ttatggatagcagaaaaagaagaatttaaacaagatga-	Protospacer
..* .*********** ************* .*.**.* 

35. spacer 1.56|916804|38|NZ_LT906477|PILER-CR matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 9, identity: 0.763

ccaaagatagcagaaatagaagaatttaaa-gaaataat	CRISPR spacer
ttatggatagcagaaaaagaagaatttaaacaagatga-	Protospacer
..* .*********** ************* .*.**.* 

36. spacer 1.56|916804|38|NZ_LT906477|PILER-CR matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 9, identity: 0.763

ccaaagatagcagaaatagaagaatttaaa-gaaataat	CRISPR spacer
ttatggatagcagaaaaagaagaatttaaacaagatga-	Protospacer
..* .*********** ************* .*.**.* 

37. spacer 2.25|980711|37|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to MF403008 (Agrobacterium phage Atu_ph07, complete genome) position: , mismatch: 9, identity: 0.757

tggttataacaatgataaagaatatgaggaaatttct	CRISPR spacer
ttataaaattaatgataaagaatatgaggcattttca	Protospacer
* .* * * .******************* * **** 

38. spacer 2.9|979637|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN831028 (Fusobacterium nucleatum subsp. polymorphum strain NCTC10562 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.722

tcgatactgaaataaaacaattaaaaaaatcaaata	CRISPR spacer
agaaaaaagaaataaaaaaattaaaaaaataaaaac	Protospacer
  .* *  ********* ************ ***  

39. spacer 2.9|979637|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029750 (Staphylococcus aureus strain Smith plasmid pSS41, complete sequence) position: , mismatch: 10, identity: 0.722

tcgatactgaaataaaacaattaaaaaaatcaaata	CRISPR spacer
ttggagaacaaataaaacaattgagaaaatcaaatg	Protospacer
*.*. .   *************.*.**********.

40. spacer 4.6|1192415|36|NZ_LT906477|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039220 (Piscirickettsia salmonis strain NVI 5692 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

tgaaagaactagaaaagagttagaaataaatcatac	CRISPR spacer
agttttaactaggaaagagttagaaaaaaatcttga	Protospacer
 *    ******.************* ***** *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 168183 : 177408 8 Clostridium_phage(33.33%) protease,tRNA NA
DBSCAN-SWA_2 313334 : 322148 9 Erysipelothrix_phage(37.5%) NA NA
DBSCAN-SWA_3 325651 : 384014 55 Paenibacillus_phage(25.0%) capsid,holin,tail,portal,transposase,integrase,terminase,protease,head attL 358200:358216|attR 363778:363794
DBSCAN-SWA_4 481087 : 491459 10 Tupanvirus(25.0%) transposase NA
DBSCAN-SWA_5 884160 : 973003 66 Bacillus_phage(15.0%) capsid,protease,transposase NA
DBSCAN-SWA_6 1257279 : 1269810 12 Leptospira_phage(22.22%) transposase NA
DBSCAN-SWA_7 1307109 : 1314134 8 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_8 1661476 : 1669141 12 Clostridium_phage(50.0%) integrase attL 1662236:1662258|attR 1677546:1677568
DBSCAN-SWA_9 1685917 : 1693786 7 Synechococcus_phage(33.33%) tRNA NA
DBSCAN-SWA_10 1998004 : 2026007 27 Staphylococcus_phage(28.57%) protease,transposase,coat NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage