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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT906466 Listeria ivanovii subsp. ivanovii strain NCTC11007 chromosome 1 5 crisprs DinG,cas3,WYL,DEDDh,csa3 0 2 6 0

Results visualization

1. NZ_LT906466
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906466_1 451232-451518 Orphan I-A
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906466_2 460506-461118 Orphan I-A
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906466_3 731135-731535 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906466_4 2706233-2706412 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906466_5 2788448-2788560 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT906466_2 2.3|460666|37|NZ_LT906466|PILER-CR,CRISPRCasFinder,CRT 460666-460702 37 NZ_CP030151 Bacillus velezensis strain DSYZ plasmid pDSYZ, complete sequence 46249-46285 4 0.892
NZ_LT906466_2 2.3|460666|37|NZ_LT906466|PILER-CR,CRISPRCasFinder,CRT 460666-460702 37 NZ_CP026611 Bacillus velezensis strain CGMCC 11640 plasmid unnamed, complete sequence 22656-22692 4 0.892
NZ_LT906466_1 1.1|451261|35|NZ_LT906466|PILER-CR,CRISPRCasFinder,CRT 451261-451295 35 KY971610 Pseudomonas phage PspYZU05, complete genome 103571-103605 11 0.686

1. spacer 2.3|460666|37|NZ_LT906466|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030151 (Bacillus velezensis strain DSYZ plasmid pDSYZ, complete sequence) position: , mismatch: 4, identity: 0.892

agcttcctttttttaagaaattagcaacattttcagc	CRISPR spacer
tactgcctttatttaagaaattagcaacattttcagc	Protospacer
 .** ***** **************************

2. spacer 2.3|460666|37|NZ_LT906466|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026611 (Bacillus velezensis strain CGMCC 11640 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.892

agcttcctttttttaagaaattagcaacattttcagc	CRISPR spacer
tactgcctttatttaagaaattagcaacattttcagc	Protospacer
 .** ***** **************************

3. spacer 1.1|451261|35|NZ_LT906466|PILER-CR,CRISPRCasFinder,CRT matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 11, identity: 0.686

ctgtataaatttcatccgatgaatttcgacatcgt	CRISPR spacer
atgtagaaatttcatcagatgaattttattctatg	Protospacer
 **** ********** *********.. . *   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 117252 : 120437 6 Listeria_phage(50.0%) holin NA
DBSCAN-SWA_2 1260295 : 1315832 55 Bacillus_virus(17.65%) tRNA,protease NA
DBSCAN-SWA_3 1838473 : 1846784 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 2004388 : 2012377 10 Faustovirus(14.29%) NA NA
DBSCAN-SWA_5 2514257 : 2522116 7 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 2835765 : 2845980 7 Tupanvirus(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage