CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906435	Pandoraea sputorum strain NCTC13161 chromosome 1	1 crisprs	DEDDh,WYL,DinG,csa3	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906435_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906435_1

3016458-3016555

Orphan

Consensus_repeat	Method
GCACCGCGTCGCTTTGACGAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906435_1

>merge|NZ_LT906435|1|3016458-3016555|CRISPRCasFinder
GCACCGCGTCGCTTTGACGAAGATCGTCCGCGTCGTAATACCGAGGGTGGTGCACGTGGCAGCTTCGACAATCGCGCACCGCGTCGCTCTGACGAAGA

>NZ_LT906435|1|1|3016458-3016555|CRISPRCasFinder
GCACCGCGTCGCTTTGACGAAGA	TCGTCCGCGTCGTAATACCGAGGGTGGTGCACGTGGCAGCTTCGACAATCGC
GCACCGCGTCGCTCTGACGAAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906435.1\|WP_039398736.1\|3009640_3010522_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_LT906435.1\|WP_084103728.1\|3025689_3026685_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_LT906435.1\|WP_039398748.1\|3017602_3018136_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|237227
NZ_LT906435.1\|WP_039398728.1\|3006527_3007337_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_LT906435.1\|WP_039398740.1\|3011450_3011684_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906435.1\|WP_039398742.1\|3011955_3012783_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_LT906435.1\|WP_039398758.1\|3028274_3029102_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_LT906435.1\|WP_039398730.1\|3007336_3008119_-\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|237831
NZ_LT906435.1\|WP_039398732.1\|3008183_3008744_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_LT906435.1\|WP_039398752.1\|3020471_3021968_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|129010
NZ_LT906435.1\|WP_039398756.1\|3027047_3028250_+\|succinyldiaminopimelate-transaminase	unknown	unknown	gnl\|CDD\|236393
NZ_LT906435.1\|WP_039398760.1\|3029245_3029593_+\|ArsC-family-reductase	unknown	unknown	gnl\|CDD\|239333
NZ_LT906435.1\|WP_039398738.1\|3010676_3011426_-\|30S-ribosomal-protein-S2	unknown	unknown	gnl\|CDD\|235396
NZ_LT906435.1\|WP_039398744.1\|3012921_3015486_+\|[protein-PII]-uridylyltransferase	unknown	unknown	gnl\|CDD\|235101
NZ_LT906435.1\|WP_039398726.1\|3005325_3006525_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_LT906435.1\|WP_039398762.1\|3029597_3030749_+\|succinyl-diaminopimelate-desuccinylase	unknown	unknown	gnl\|CDD\|237265
NZ_LT906435.1\|WP_039398764.1\|3030776_3031673_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236988
NZ_LT906435.1\|WP_039398754.1\|3022007_3025523_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_LT906435.1\|WP_039398750.1\|3018152_3020285_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_LT906435.1\|WP_039398734.1\|3008828_3009542_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|239787

Protein	Function_ID	Function_description	E-value
NZ_LT906435.1\|WP_039398736.1\|3009640_3010522_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	6.1419e-150
NZ_LT906435.1\|WP_084103728.1\|3025689_3026685_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	3.8599e-06
NZ_LT906435.1\|WP_039398748.1\|3017602_3018136_-\|peptide-deformylase	gnl\|CDD\|237227	PRK12846, PRK12846, peptide deformylase; Reviewed.	1.40444e-90
NZ_LT906435.1\|WP_039398742.1\|3011955_3012783_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	1.43454e-168
NZ_LT906435.1\|WP_039398728.1\|3006527_3007337_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.25231e-47
NZ_LT906435.1\|WP_039398758.1\|3028274_3029102_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_LT906435.1\|WP_039398730.1\|3007336_3008119_-\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|237831	PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional.	1.6581e-128
NZ_LT906435.1\|WP_039398732.1\|3008183_3008744_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	2.2402e-108
NZ_LT906435.1\|WP_039398752.1\|3020471_3021968_-\|hypothetical-protein	gnl\|CDD\|129010	smart00771, ZipA_C, ZipA, C-terminal domain (FtsZ-binding). C-terminal domain of ZipA, a component of cell division in E.coli. It interacts with the FtsZ protein in one of the initial steps of septum formation. The structure of this domain is composed of three alpha-helices and a beta-sheet consisting of six antiparallel beta-strands.	3.37284e-21
NZ_LT906435.1\|WP_039398756.1\|3027047_3028250_+\|succinyldiaminopimelate-transaminase	gnl\|CDD\|236393	PRK09147, PRK09147, succinyldiaminopimelate transaminase; Provisional.	0
NZ_LT906435.1\|WP_039398760.1\|3029245_3029593_+\|ArsC-family-reductase	gnl\|CDD\|239333	cd03035, ArsC_Yffb, Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.	3.18139e-57
NZ_LT906435.1\|WP_039398738.1\|3010676_3011426_-\|30S-ribosomal-protein-S2	gnl\|CDD\|235396	PRK05299, rpsB, 30S ribosomal protein S2; Provisional.	4.04646e-165
NZ_LT906435.1\|WP_039398744.1\|3012921_3015486_+\|[protein-PII]-uridylyltransferase	gnl\|CDD\|235101	PRK03059, PRK03059, PII uridylyl-transferase; Provisional.	0
NZ_LT906435.1\|WP_039398726.1\|3005325_3006525_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_LT906435.1\|WP_039398762.1\|3029597_3030749_+\|succinyl-diaminopimelate-desuccinylase	gnl\|CDD\|237265	PRK13009, PRK13009, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_LT906435.1\|WP_039398764.1\|3030776_3031673_+\|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase	gnl\|CDD\|236988	PRK11805, PRK11805, 50S ribosomal protein L3 N(5)-glutamine methyltransferase.	2.55989e-180
NZ_LT906435.1\|WP_039398754.1\|3022007_3025523_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_LT906435.1\|WP_039398750.1\|3018152_3020285_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_LT906435.1\|WP_039398734.1\|3008828_3009542_-\|UMP-kinase	gnl\|CDD\|239787	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).	1.41343e-144

>NZ_LT906435.1|WP_039398744.1|3012921_3015486_+|[protein-PII]-uridylyltransferase
MHARAHAPSPLRQALKDRKAELVERFVANGKIDGLLHGLCHAVDQAMRDAWAEYRMPDDFALVAVGGYGRGELYPYSDVDILLLHPGTDSEALTSHVEPFIGFLWDIGVEIGSSVRTVDECISEAQADITVQTSLLEARLLTGNQALFDEFQARFADDLDPLAFFRSKQLEIRQRHAKYQDTPYSLEPNCKESPGGLRDLQVILWMTKAAGLGNSWAELSTRDLLTDRELKELRRNEQFLKGLRARLHLLARRRQDVLVFDLQTALAQSLGFDATTTKRASEQLMRRYYWAAKAVSQLNTVLLLNVEARLFPQTSGVTRVINERFVEKQGMIEIVDDELYTRHPNAILETFLLYEQVVGVKGLSARTLRALYNARELMNGQWRADPENRRTFLQILQQPQGITHALRLMNQTSVLGRYLINFRRVVGQMQHDLYHVYTVDQHILMVVRNIRRFAVAEHTHEYPFCSQLIANFDRPWVLTIAALFHDIAKGRGGDHSTLGMVDARTFCTRHGISKEDTDLIVWLVGEHLTMSTVAQKQDTTDPEVIRRFAEKVENERRLTALYLLTVADIRGTSPKVWNAWKGKLLEDLYRLTLQVLGGANPDPHAQLKARKEEALGLLRLYTVPERAQEALWNTLDVAYFLRNDPADVAWQTRHLWRHVDSASPIVKARPSPIGEGLQVLVYVRDQVDLFARICGYFERKGLSILDAKVHTTSQGFALDSFLLTDPGLDTSYRDIINLVESELVSLLTREEPLAEPSKGRLPRRSRSFPVTPRVDLRPDERGQYYLLSVSANDRTGLLYAVARVLARHGVSVRTARINTLGERVEDTFLLDGSRLQDSRLQIAVETELLEALEP
>NZ_LT906435.1|WP_039398742.1|3011955_3012783_+|type-I-methionyl-aminopeptidase
MAITLKNAHDIEMMRVACRLASEVLDFITPHVRAGVTTGELDRLCHEFMIKEQGTVPAPLNYQPPGYPPYPKATCISVNDVICHGIPGDKVLKNGDALNIDITVIKDGYFGDTSRMFIVGDGTILAKRLAQVTYECMWLGINQVRPGARLGDIGQAIQTHAEAQGYSVVREYCGHGIGQVFHEDPQILHYGRQGTGLELQAGMIFTIEPMINAGKREIRTMPDQWTVKTRDRSLSAQWEHTVLVTETGHEVLTHSAQTPAPPPGSSYVTSFAAAA
>NZ_LT906435.1|WP_039398740.1|3011450_3011684_-|hypothetical-protein
MVKGFPLVFGAIRRSFGVFGPKLVLKGAKFGDSTGSDLSSRLGNFEIAGRRTQGARSSQAGHAKLYGSLTKRVRQPV
>NZ_LT906435.1|WP_039398738.1|3010676_3011426_-|30S-ribosomal-protein-S2
MSVTMRQMLEAGVHFGHQTRFWNPKMAPYIFGHRNKIHIINLEKTLPMYQDALKYVRQLAANRGTILFVGTKRQARDIVAEAAARAGMPYVNNRWLGGMLTNFKTLKSSIKKLKDMEQALEAGEQERMSKKEALLFDREMAKLQKSIGGVKEMGGMPDAIFVVDVGYHKIAITEANKLGIPVIAVVDTNHSPEGVDYVIPGNDDSSKAVELYVQGVADAILEGRANAVKEVVEAVRGEGDEFVEVNEEA
>NZ_LT906435.1|WP_039398736.1|3009640_3010522_-|elongation-factor-Ts
MPAITAAMVGELRAKTDAPMMECKKALTEADGDMVRAEEILRVKLGSKASKAASRITAEGVISAYIDGGKGAVVEINCETDFVSKNDDFLKFAENLAKLVAENNPADVAALSALPLDGKTVDQVRADLIGKIGENMTIRRFQRYETSAKLASYLHGTRIGVIVEYEGADAEVGKNVAMHIAAMKPVAVSGDQVAADLIEKERKVAAEKAAESGKPAEIVAKMVEGSVQKFLKEVSLFNQTYVKDDKATVEQMLKANNTTVKGFTMFVVGEGIEKKQDDFAAEVAAQVAAAKQS
>NZ_LT906435.1|WP_039398734.1|3008828_3009542_-|UMP-kinase
MSTPYKRVLLKLSGEALMGDDSFGINRATIERMVGDIAEVVRLGTQLAVVIGGGNIFRGVAGGAAGMDRATADYMGMLATMMNALALQDAMRHAGIEARVQSALRMDQVVEPYIRPRAIRQLEEGKVVIFAAGTGNPFFTTDTAAALRGSEVGAEVVLKATKVDGVYSADPKKVPDAVKYSTISFDEAISKNLQVMDATAFALCRDQKMPVRVFSIVKPGALKHVILGEDEGTLVHV
>NZ_LT906435.1|WP_039398732.1|3008183_3008744_-|ribosome-recycling-factor
MSVADVKKNVEQKMKSSIESFKNNLAKIRTGRAHVGLLDHVQVDYYGSMVPISQVANVSLVDARTIGVQAWEKNMVPKVEKAIRESDLGLNPATQGDLIRVPMPQLTEERRREMTKLVKSEGENAKVAVRNLRRDANEQLKKMVKDKEISEDDERRGGDDVQKFTDKFVAEIDELVKQKDAEIMTV
>NZ_LT906435.1|WP_039398730.1|3007336_3008119_-|di-trans,poly-cis-decaprenylcistransferase
MGFLSSTLSAPETASIPRHVAIVMDGNGRWATSRKLPRVAGHKRGVDAVREAVTACAELGVEYLTLFAFSSENWRRPQDEVSTLMQLFILALEREVGKLHSNGIRLRVIGALEAFEPRIQELVRRAEERTQDNKGLTLTIAANYGGRWDILQAAQKLAAARVAQGGAAALDTSFSEDDLAPYLSMAYAPEPDLFIRTGGDQRVSNFLLWQLAYTELYFTEEFWPDFNANTLKRAVAEFQQRERRFGRTSAQVQNPSGQSA
>NZ_LT906435.1|WP_039398728.1|3006527_3007337_-|phosphatidate-cytidylyltransferase
MLKTRVITAVVLLAILLPVIFVGTPAQFALLAAVIVAAAGWEWGRLVGLNGTGAVFYGALALLGVGLTWAGGWTLSSIWLKPAAVFWILAGPYTLARKPATQGAWRGLLLVAGPVLLIAAWQALCLARERGVAFLLSVLIIVWLADTGAYFAGRAFGKRKLAPSISPGKSWEGAIGGWLLVLVIAAAVLVSGLQAPTIVSHLASTLGLALGALALTVLVAFSVVGDLFESQLKRQAGVKDSSALLPGHGGVLDRIDALLPVLPLAMLFV
>NZ_LT906435.1|WP_039398726.1|3005325_3006525_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MSQRLSILGSTGSIGVSTLDVVGRHPDRFSVYALSAHRNLDRLFEQCVAHRPQVAVVADADGARALSARLAEAGLKIDVTYGPQALIEIAEAGEVTMVVAAIVGAAGLQSTLAAARAGKRILLANKESLVLSGALFMATAERAGATLLPLDSEHNAIFQCLPQVAGENRISTRGVEKLVLTASGGPFRERELASLENVTPDEACAHPNWVMGRKISVDSASMMNKGLEVIEAHWLFNMPPEKIEVLIHPQSVIHSMVTYTDGSTLAQLGNPDMRTPIAHALAFPDRVTSGVAGLNLADIGKLTFEAPDLRRFPCLRLAFDTLHRGGTAGALLNASNEVAVAAFLEGRIRFTAIAQVVERVLDTVAVGEATSLEVVLEADHRARELATEIVAGLPAPARS
>NZ_LT906435.1|WP_039398748.1|3017602_3018136_-|peptide-deformylase
MIRDILKMGDPRLLRIAKPVEQFGTPELDELIADMFETMKHANGAGLAAPQIGVDLQVVIFGFEHNERYPDAPEVPETVLINPVITPLTQDMEEGWEGCLSVPGLRGMVNRYSMLRYEGFDQHGHAIDRVAEGFHARVVQHECDHLIGKLYPMRITDFSKFGFTEILFPGLDPNSDD
>NZ_LT906435.1|WP_039398750.1|3018152_3020285_-|NAD-dependent-DNA-ligase-LigA
MSQTSVPGQGANAPTPANVTAAAQRAAELRNELARHNRAYYEDDAPLIPDAEYDRLFGELVALENAYPELQRADSPTQRVGGKPVDGFAPVVHRVPMLSLNNGFADEDVEAFDRRVSDGLRPDAVGAAGAGNASSGDLFGAPVEYAAELKFDGLAIALRYEQGVLVQAATRGDGTTGEDVTANIRTIKKIPLKLESENPPEVLEVRGEVLMFRADFDKLNEAQEAAGEKVFVNPRNAAAGSLRQLDSKITAKRPLSFFAYGVGELVGVPMPETHSALLDWYVTLGIPVNDKREVVQGAQGLLKFYREVGDARASLPYDIDGVVYKVNRRDEQDRLGFVSRAPRFALAHKFPAQEALTTLLDIEVQVGRTGAITPVARLAPVFVGGATVTNATLHNEDEIRRKDVMIGDTVIVRRAGDVIPEVVGSVLDRRPDDARAFVMPTECPVCGSAIEKLPDEAIARCTGGLICAAQRKQALLHFAQRRALDIEGLGDKLVEQLVDQQIIRTPADLFKLGVAKLAALDRMADKSASNLVAALETARHTTLARFIFALGIRHVGEATAKDLARHFGKLDNLIAVCKRDSDLTELLAVPDVGPIVAESINNFFCEDHNVEVIEQLRAAGVTWPESEPAAVAPLPLAGKTFVLTGTLPTLSRDEAKAMLEAQGAKVAGSVSAKTDYVVAGAEAGSKLAKAEALGVPVLDEDAMRAMLAAL
>NZ_LT906435.1|WP_039398752.1|3020471_3021968_-|hypothetical-protein
MNELQLSLIAAGVVVLLGVVAYNAWQGSKARARIPRRMPVDGAGIDATAGTPDADDDRPFIEPTLSPPRVPAQSGERREPTLGPAAAGTSVQDAFAINEDAWDAPPAARKRAAQEAAARAAEGSESDVVADTAPVQPHDAEAAQRRDAQDAAAASAVARVDAELAADDTVDAATAGAAASAAAAPDAEAQAAHVDTAPTSTDVAVPAPAAPEAPVAAARPAVPSGPPPIIDERIDCIVELPLANMVAAERLMPLTVRMRRAGSKPVNVEGRVDEASAWEPIRTGGRYHQLRMAVQLANRAGALNEVEFSEFSNLVQTLADAVDALPELPDMMETVARGRELDSFAAQCDAQLSVNVLSDGAPWSANYVQAVATQDGLLLSRDGMRFVKLDSRQNPVFMLQFGDTNFLRDDLTYKGGDLITMLLDVPVADEDLLPFRLMCDYARSIGQRIGGRVVDDQRRPLSDAALQNVDKQLLKLYERLEARGLPAGSPVTRRLFSQ
>NZ_LT906435.1|WP_039398754.1|3022007_3025523_-|chromosome-segregation-protein-SMC
MRLTSIKLAGFKSFVDPTNFAVPGQLVGIVGPNGCGKSNIIDAVRWVLGESRASELRGESMQDVIFNGSTARKQASRASVELVFDNSAGRAAGQWSQYAEIAVKRVLTRDGTSSYYINNLPARRRDIQDIFLGTGLGPRAYAIIGQGMISRIIEAKPEELRVFLEEAAGVSKYKERRRETENRLQDTRENLTRVEDILRELGTNLEKLESQAVVANRFKDLQRDGEEKQQLLWLLRKNEAQNEQERQQRAIESAQVDLEAQMSRLRGSESDLETLRAAHYTATDAVQAAQSAMYEANSEVSRLEAEIRYVVESRNRVQAQLAALTSQREQWQARSAQSEEELALAEEELIIAEERAATAQDQAADQNEALPALESGWRDAQNLLNEQRSEIAQVEQSLKLEAAHQRNADQALQQLQQRQERLQGEARGLDKPDEAELEMQRGDLAEHQAMLEDAQAELADAEERLPRLEAERAEAQARVQSEAATIAQLEARLTALKQLQESVQTEGKVQPWLDKHELAQLPRLWKKLHIEPGWEPALESVLRERLAALEISNLDWVKAFASDAPPAKLAFYSPPPAARPMEAPASLRPLLSLLRIDDPGLRAVLQEWLGHVFVADDLAQAMVARAQLPEGASIVVKAGHQVTRVGVQLYAADSEQAGLLARQQEIENLGKQLRAQALLSDEAKSAAVRAEAAYSQAAQSLSEVRGRAERATQRVHALQMDVLKLTQAYERYNARSTQIDEELREIAAQIEEQLAMRAESEANFEQSDARLAELQATFEDGQLEFESLDSQLSDARNRARELERLAQEASYGQKGISSKIDEHRRSIQTALEQAERLVVSIEQAQAELALITEQTAENGLQDALELRAEKEEILGAARIELDALTQKLRQSDEERLAAERGLQPLRDRITELQLKEQAARLNREQFVEQLTTAEVDEEALSAKLTADMKPSYLQGEVTRINNAINALGPVNMAALEELETARERKVFLDAQSADLNDAIETLEGAIRKIDEETRVLLQGTFDEVNKHFGELFPMLFGGGQAKLIMTGDEILDAGVQVMAQPPGKKNSTIHLLSGGEKALTAIALVFGMFQLNPAPFCLLDEVDAPLDDANTERYAKMVARMSDRTQFVFISHNKIAMEMANQLIGVTMQEQGVSRIVAVDMESAINLAEIA
>NZ_LT906435.1|WP_084103728.1|3025689_3026685_-|DMT-family-transporter
MTVAGNGAGGPESASGASSTTFGTRAAPALAILIGSSVWGLAWFPYRILAQWGVAAVPAQICTATVAILLLSLVYRRSLGTLRWSWLLVGVAFAGGTTNVAFVWGTTHGHVMRVLLLFYLTPVWTALFAHWLLGERVGLRGVGLIALALGGAGLMLWSPELGWPVPNNPGEWAGAIAGAAFALNNVLLRRVSQALPGVPAEMRSWTLYLGCVVGGLLVLPFDGGVQAGQAAVSALTSGAATAAVALALGCTIAVTNVIVQFGLARVPANQAALIMLFEIVVAAISSWWLASEGLGVREIAGGLCIVAAGVLSGILPDSRRCKSATAGDAMV
>NZ_LT906435.1|WP_039398756.1|3027047_3028250_+|succinyldiaminopimelate-transaminase
MNPLLDKLQPYPFERLKALVADVTPANTYKAISFGIGEPKHPTPQFIKEALIEGLGGLSNYPATAGGEPLRAAIAQWLERRYALPNVNPATEVLPVTGSREALFSFAQAVVDGSKSGARVLCPNPFYQIYEGATLLAGATPYYADSDPARNFAPDYDAVPADVWRDVQLVYLCSPGNPTGAVLSLADWKRLFELSDEYGFVIASDECYSEIYFDEERAPLGGLAAAHQLGRSFERLVVFSSLSKRSNVPGMRSGFVAGDAAILKKFLLYRTYHGCAMSPAVQAASIAAWNDEAHVRLNRSKYLKKFQTVTPMLAEVLDVRLPDAGFYLWAKVDTKTGLSDTEFTRQLLAQYNVAVLPGSYLGRAAHGANPAENYVRIALVADVDECTEGAQRIVQFCQSL
>NZ_LT906435.1|WP_039398758.1|3028274_3029102_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MSQQLQTIIDQAWENRAEISAKAAPADVREAVSHVIAELDKGALRVAQKQDGQWIVNQWIKKAVLLSFRLEDNAVMPAGGFSQFYDKVPSKFANYTAEDFARGGFRVVPPAVARRGSFIGKNVVLMPSYTNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPVIIEDNCFIGARSEVVEGVIVEENSVISMGVYLGQSTKIYDRETGEVHYGRVPAGSVVVPGNLPSKDGKYSLYCAVIVKKVDAQTRAKTAINDLLRGE
>NZ_LT906435.1|WP_039398760.1|3029245_3029593_+|ArsC-family-reductase
MTAVLYGIPNCDTVKKARTWLDEHGVAYDFHDFKKAGVNDALLGTWLKQVPLSTLLNRKGTTWRKLTPEQQAAAADESVARTLMIENPSLIKRPVLMADGKVSVGFTPDSYASRF
>NZ_LT906435.1|WP_039398762.1|3029597_3030749_+|succinyl-diaminopimelate-desuccinylase
MTSSQGATLALTEQLIARHSVTPEDRDCQAILARRLSAIGFACETIASNGVTNLWAVKRGTRGTDGKLLVFAGHTDVVPTGPVEQWHSDPFAPTHRDGMLYGRGAADMKTSLAAFVVASEEFVAQHPDHAGAIGFLLTSDEEGPATDGTVKVVEALTARGERLDYCVVGEPTSSQRLGDMVKNGRRGSMSGKLIVKGVQGHIAYPHLAKNPTHLFAPALAELTQTVWDNGNEYFPPTTWQISNIHAGTGATNVIPGELTVMFNFRFSTASTSDGLQQRVHELLDRHGLTYTLDWSISGQPFLTPRGDLSDALSSAIREETGLETELSTTGGTSDGRFIARICPQVIEFGPCNASIHKIDEHIAVADIEPLKNVYRGVLKRLVA
>NZ_LT906435.1|WP_039398764.1|3030776_3031673_+|50S-ribosomal-protein-L3-N(5)-glutamine-methyltransferase
MTTQKTHPFQTLRDLLRYAVSRFTEAELAFGHGTATAYDEAAYLLLHTLHLPIDTLDPFLDARLLPDEIERALSVINRRAGERVPASYITNEAWMHGHRFYVDERVIVPRSFIGELLEDALQPWVNHPDDVADVLELCTGSGCLAILAAETFPAAQIDAVDISHDALDVAKINVADYGLDDRVALHLGDLYAPLPEGKRYEVIITNPPYVNEGSMQVLPAEYRHEPRLALAGGDDGMDIVRRIIAGARERLTDDGVLVVEIGNERHFVEAAFPELPITWLATSAGDDMVFLVQAADLP

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2151492 : 2171480

Burkholderia_phage(41.18%)

holin,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039402928.1\|2151492_2152170_-	LexA family transcriptional regulator	B5WZX5	Pseudomonas_phage	4.6e-15	36.7
WP_157127366.1\|2152346_2153306_+	hypothetical protein	A0A1J0MCP9	Streptomyces_phage	1.2e-16	40.9
WP_052252752.1\|2153346_2153952_+	hypothetical protein	NA	NA	NA	NA
WP_052252754.1\|2153948_2154572_+	hypothetical protein	NA	NA	NA	NA
WP_039397763.1\|2154713_2155268_+	hypothetical protein	A9YX29	Burkholderia_phage	3.3e-43	48.1
WP_039397765.1\|2155443_2156919_+	DUF3383 domain-containing protein	A0A0P0I492	Acinetobacter_phage	6.8e-96	42.6
WP_039397767.1\|2156931_2157372_+	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	1.7e-34	51.4
WP_039397769.1\|2157371_2157863_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	8.2e-14	35.1
WP_052252756.1\|2158043_2159777_+	hypothetical protein	A0A0M4REK7	Salmonella_phage	4.9e-37	35.7
WP_039397771.1\|2159773_2160358_+	hypothetical protein	NA	NA	NA	NA
WP_039397773.1\|2160359_2160674_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.2e-15	42.4
WP_039397775.1\|2160673_2161666_+	hypothetical protein	A9YX04	Burkholderia_phage	1.5e-86	59.6
WP_039397776.1\|2161742_2162489_+	phage protein	A9YX06	Burkholderia_phage	9.6e-99	73.8
WP_039397778.1\|2162491_2162839_+	hypothetical protein	A9YX11	Burkholderia_phage	3.4e-38	70.1
WP_039397780.1\|2162835_2164017_+\|plate	baseplate J/gp47 family protein	A9YX12	Burkholderia_phage	3.7e-137	66.2
WP_039397782.1\|2164018_2164681_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	1.2e-87	68.2
WP_039397783.1\|2165742_2165934_+	hypothetical protein	NA	NA	NA	NA
WP_039397785.1\|2166015_2166309_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-19	52.8
WP_039397787.1\|2166376_2166853_+	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	1.3e-48	60.4
WP_039397789.1\|2166852_2167338_+	DUF2514 family protein	U6C7Z8	Ralstonia_phage	3.5e-09	40.4
WP_039397791.1\|2167523_2167781_-	hypothetical protein	NA	NA	NA	NA
WP_039397793.1\|2169791_2171480_+	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	5.6e-62	33.9

DBSCAN-SWA_2

4427227 : 4436561

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_039400703.1\|4427227_4428265_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-05	44.4
WP_039400704.1\|4429579_4430128_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	5.7e-48	55.2
WP_039404041.1\|4430183_4431065_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	6.7e-99	59.6
WP_039400706.1\|4431079_4432144_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.5e-84	47.4
WP_039400707.1\|4432172_4432757_-	peroxidase-related enzyme	NA	NA	NA	NA
WP_039400708.1\|4432837_4434589_-	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	1.3e-53	29.4
WP_039400709.1\|4434752_4436561_+	DNA helicase RecQ	A0A1V0SBK0	Catovirus	1.5e-76	35.7

DBSCAN-SWA_3

5253795 : 5289907

Burkholderia_phage(40.0%)

portal,head,holin,plate,integrase,tail,terminase,capsid,protease

attL 5250864:5250909|attR 5289253:5289298

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5250864:5250909	attL	NA	NA	NA	NA
WP_084104315.1\|5253795_5254782_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	1.5e-43	36.0
WP_052253127.1\|5255504_5256524_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	3.8e-138	73.5
WP_052253128.1\|5256568_5258338_-\|terminase	terminase ATPase subunit family protein	A0A077K8Q7	Ralstonia_phage	3.9e-231	67.5
WP_039393526.1\|5258480_5259368_+\|capsid	GPO family capsid scaffolding protein	A0A1S5NPS0	Burkholderia_phage	1.5e-53	46.8
WP_039393528.1\|5259416_5260427_+\|capsid	phage major capsid protein, P2 family	E5FFI6	Burkholderia_phage	5.3e-132	66.4
WP_039393530.1\|5260429_5261116_+	hypothetical protein	A0A077K804	Ralstonia_phage	9.9e-50	48.8
WP_039393532.1\|5261215_5261698_+\|head	head completion/stabilization protein	K4NZV5	Burkholderia_phage	5.2e-29	48.6
WP_039393533.1\|5261697_5261901_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-18	64.2
WP_039393536.1\|5261903_5262278_+	membrane protein	E5E3R9	Burkholderia_phage	1.2e-28	60.5
WP_039393537.1\|5262274_5262598_+\|holin	phage holin family protein	A0A077KER0	Ralstonia_phage	8.9e-17	50.5
WP_039393539.1\|5262581_5263397_+	DUF3380 domain-containing protein	E5E3R7	Burkholderia_phage	3.3e-84	62.6
WP_039393540.1\|5263393_5263903_+	hypothetical protein	A0A1S5NQ26	Burkholderia_phage	2.7e-28	49.0
WP_039393541.1\|5263899_5264352_+\|tail	phage tail protein	A0A0M4R2U5	Salmonella_phage	1.7e-26	40.4
WP_039393542.1\|5264351_5264801_+	phage virion morphogenesis protein	A0A077K9X5	Ralstonia_phage	1.3e-42	60.8
WP_157127448.1\|5264806_5265658_-	hypothetical protein	NA	NA	NA	NA
WP_039393547.1\|5265802_5266438_+\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	7.8e-41	45.4
WP_039393548.1\|5266434_5266806_+	GPW/gp25 family protein	A4PE42	Ralstonia_virus	3.3e-23	50.0
WP_052252346.1\|5266802_5267759_+\|plate	baseplate J/gp47 family protein	A0A077K9X9	Ralstonia_phage	3.1e-73	53.2
WP_039393550.1\|5267755_5268370_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.6e-62	64.5
WP_039393552.1\|5270490_5270847_+	hypothetical protein	NA	NA	NA	NA
WP_039393554.1\|5270849_5271845_-\|integrase	tyrosine-type recombinase/integrase	W6MYA3	Pseudomonas_phage	1.6e-32	35.9
WP_084104088.1\|5272220_5272412_+	Com family DNA-binding transcriptional regulator	A0A1S5NPS9	Burkholderia_phage	6.8e-17	74.1
WP_095178489.1\|5272452_5273118_+	site-specific DNA-methyltransferase	A0A1S5NPU0	Burkholderia_phage	1.2e-84	65.8
WP_039393558.1\|5273234_5274413_+\|tail	phage tail sheath protein	A0A077K9Y4	Ralstonia_phage	6.5e-166	71.9
WP_039393560.1\|5274437_5274950_+\|tail	phage major tail tube protein	E5E3Q2	Burkholderia_phage	2.3e-51	57.6
WP_052252349.1\|5275001_5275328_+\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	5.4e-22	55.6
WP_125347820.1\|5275285_5275429_+\|tail	GpE family phage tail protein	E5E3U7	Burkholderia_phage	4.3e-08	60.5
WP_039393562.1\|5275425_5278086_+	hypothetical protein	A4PE52	Ralstonia_virus	4.3e-234	52.9
WP_072633367.1\|5278096_5278735_+\|tail	phage tail protein	E5E3P8	Burkholderia_phage	5.6e-39	57.0
WP_095178491.1\|5278782_5279940_+	phage late control D family protein	E5E3P7	Burkholderia_phage	8.8e-99	54.6
WP_052253129.1\|5279987_5281118_-	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_052252350.1\|5281174_5281900_-	hypothetical protein	NA	NA	NA	NA
WP_039393564.1\|5281958_5282378_-	helix-turn-helix domain-containing protein	A4JWR8	Burkholderia_virus	2.0e-29	51.8
WP_039393565.1\|5282426_5282714_+	hypothetical protein	NA	NA	NA	NA
WP_039401584.1\|5282736_5282928_+	hypothetical protein	NA	NA	NA	NA
WP_039393568.1\|5282956_5283151_+	hypothetical protein	NA	NA	NA	NA
WP_039393570.1\|5283147_5283408_+	ogr/Delta-like zinc finger family protein	A4PE60	Ralstonia_virus	2.2e-18	54.9
WP_157127450.1\|5283506_5283722_+	hypothetical protein	NA	NA	NA	NA
WP_157127453.1\|5283875_5284136_+	hypothetical protein	NA	NA	NA	NA
WP_157127454.1\|5284148_5284814_+	hypothetical protein	NA	NA	NA	NA
WP_039393576.1\|5284953_5285202_+	hypothetical protein	I6NMK4	Burkholderia_virus	4.3e-11	46.4
WP_039393578.1\|5285213_5287925_+	toprim domain-containing protein	A0A077K8T2	Ralstonia_phage	7.7e-287	55.5
WP_072633368.1\|5287894_5288149_+	DUF4224 domain-containing protein	E5E3T1	Burkholderia_phage	5.0e-15	65.4
WP_039393580.1\|5288149_5289178_+\|integrase	tyrosine-type recombinase/integrase	E5E3T0	Burkholderia_phage	5.0e-122	63.5
WP_039393581.1\|5289448_5289907_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.2e-21	43.3
5289253:5289298	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage