CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906467	Corynebacterium imitans strain NCTC13015 chromosome 1	14 crisprs	WYL,cas3,csa3,DEDDh,PrimPol,DinG,casR,csb1gr7,csb2gr5,csb3,cas1,cas2	0	7	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906467_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_1

249962-250058

Orphan

Consensus_repeat	Method
TCTAAATGGAGCTAGCTCCGTTTGGGTT	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LT906467_1

>merge|NZ_LT906467|1|249962-250058|CRISPRCasFinder
TCTAAATGGAGCTAGCTCCGTTTGGGTTGGAGGCGGGTGGAAAACGCCTGGTCGTGTGAAACCGGTTGGTCTAAATGGAGCTAGCTCCATTTGGGTT

>NZ_LT906467|1|1|249962-250058|CRISPRCasFinder
TCTAAATGGAGCTAGCTCCGTTTGGGTT	GGAGGCGGGTGGAAAACGCCTGGTCGTGTGAAACCGGTTGG
TCTAAATGGAGCTAGCTCCATTTGGGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038587763.1\|248291_249197_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_LT906467.1\|WP_038587794.1\|256494_257772_-\|DUF1727-domain-containing-protein	unknown	unknown	gnl\|CDD\|223840
NZ_LT906467.1\|WP_038587785.1\|252427_254602_+\|DNA-polymerase-III-subunit-gamma-and-tau	unknown	unknown	gnl\|CDD\|236090
NZ_LT906467.1\|WP_084674227.1\|247286_247460_-\|antitoxin	unknown	unknown	gnl\|CDD\|379416
NZ_LT906467.1\|WP_038587803.1\|260316_262152_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|235154
NZ_LT906467.1\|WP_038587779.1\|250603_251884_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|372371
NZ_LT906467.1\|WP_001082319.1\|241312_242116_+\|aminoglycoside-O-phosphotransferase-APH(3'')-Ib	unknown	unknown	gnl\|CDD\|270699
NZ_LT906467.1\|WP_038593562.1\|244944_245682_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_LT906467.1\|WP_038587789.1\|255172_255799_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_LT906467.1\|WP_038587782.1\|251873_252416_+\|suppressor-of-fused-domain-protein	unknown	unknown	gnl\|CDD\|198458
NZ_LT906467.1\|WP_011113070.1\|244352_244406_-\|chloramphenicol-resistance-leader-peptide	unknown	unknown	unknown
NZ_LT906467.1\|WP_000480968.1\|242115_242952_+\|aminoglycoside-O-phosphotransferase-APH(6)-Id	unknown	unknown	gnl\|CDD\|309685
NZ_LT906467.1\|WP_084674385.1\|247581_248307_-\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|376842
NZ_LT906467.1\|WP_038587797.1\|257782_258793_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235529
NZ_LT906467.1\|WP_038587792.1\|255800_256502_-\|glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|225974
NZ_LT906467.1\|WP_005297378.1\|243155_244331_-\|chloramphenicol-efflux-MFS-transporter-Cmx	unknown	unknown	gnl\|CDD\|225371
NZ_LT906467.1\|WP_051904679.1\|245706_247092_-\|WHG-domain-containing-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038587766.1\|249207_249702_-\|ferritin	unknown	unknown	gnl\|CDD\|153113
NZ_LT906467.1\|WP_038587800.1\|258828_259965_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_051904680.1\|254709_255096_+\|YbaB/EbfC-family-nucleoid-associated-protein	unknown	unknown	gnl\|CDD\|234669

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038587763.1\|248291_249197_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	3.98541e-109
NZ_LT906467.1\|WP_038587794.1\|256494_257772_-\|DUF1727-domain-containing-protein	gnl\|CDD\|223840	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane].	2.68263e-61
NZ_LT906467.1\|WP_084674227.1\|247286_247460_-\|antitoxin	gnl\|CDD\|379416	pfam14013, MT0933_antitox, MT0933-like antitoxin protein. This family of proteins contains the MT0933 protein, which has been identified as an antitoxin to /protein MT0934. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 90 amino acids in length.	0.00216038
NZ_LT906467.1\|WP_038587803.1\|260316_262152_-\|2-isopropylmalate-synthase	gnl\|CDD\|235154	PRK03739, PRK03739, 2-isopropylmalate synthase; Validated.	0
NZ_LT906467.1\|WP_038587779.1\|250603_251884_+\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|372371	pfam12897, Aminotran_MocR, Alanine-glyoxylate amino-transferase. These proteins catalyze the reversible transfer of an amino group from the amino acid substrate to an acceptor alpha-keto acid. They require pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze this reaction. Trans-amination reactions are of central importance in amino acid metabolism and in links to carbohydrate and fat metabolism. This class of aminotransferases acts as dimers in a head-to-tail configuration.	1.09062e-172
NZ_LT906467.1\|WP_001082319.1\|241312_242116_+\|aminoglycoside-O-phosphotransferase-APH(3'')-Ib	gnl\|CDD\|270699	cd05150, APH, Aminoglycoside 3'-phosphotransferase. APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibiotics. The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	7.00405e-89
NZ_LT906467.1\|WP_038593562.1\|244944_245682_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.87268e-106
NZ_LT906467.1\|WP_038587782.1\|251873_252416_+\|suppressor-of-fused-domain-protein	gnl\|CDD\|198458	cd10467, FAM20_C_like, C-terminal putative kinase domain of FAM20 (family with sequence similarity 20), Drosophila Four-jointed (Fj), and related proteins. Drosophila Fj is a Golgi kinase that phosphorylates Ser or Thr residues within extracellular cadherin domains of a transmembrane receptor Fat and its ligand, Dachsous (Ds). The Fat signaling pathway regulates growth, gene expression, and planar cell polarity (PCP). Defects from mutation in the Drosophila fj gene include loss of the intermediate leg joint, and a PCP defect in the eye. Fjx1, the murine homologue of Fj, has been shown to be involved in both the Fat and Hippo signaling pathways, these two pathways intersect at multiple points. The Hippo pathway is important in organ size control and in cancer. FAM20B is a xylose kinase that may regulate the number of glycosaminoglycan chains by phosphorylating the xylose residue in the glycosaminoglycan-protein linkage region of proteoglycans. This domain has homology to a kinase-active site, mutation of three conserved Asp residues at the Drosophila Fj putative active site abolished its ability to phosphorylate Ft and Ds cadherin domains. FAM20A may participate in enamel development and gingival homeostasis, FAM20B in proteoglycan production, and FAM20C in bone development. FAM20C, also called Dentin Matrix Protein 4, is abundant in the dentin matrix, and may participate in the differentiation of mesenchymal precursor cells into functional odontoblast-like cells. Mutations in FAM20C are associated with lethal Osteosclerotic Bone Dysplasia (Raine Syndrome), and mutations in FAM20A with Amelogenesis imperfecta (AI) and Gingival Hyperplasia Syndrome. This model includes the FAM20_C domain family, previously known as DUF1193; FAM20_C appears to be homologous to the catalytic domain of the phosphoinositide 3-kinase (PI3K)-like family.	0.00310528
NZ_LT906467.1\|WP_038587789.1\|255172_255799_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	2.53046e-106
NZ_LT906467.1\|WP_000480968.1\|242115_242952_+\|aminoglycoside-O-phosphotransferase-APH(6)-Id	gnl\|CDD\|309685	pfam04655, APH_6_hur, Aminoglycoside/hydroxyurea antibiotic resistance kinase. The aminoglycoside phosphotransferases achieve inactivation of their antibiotic substrates by phosphorylation utilising ATP. Likewise hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.	6.73238e-118
NZ_LT906467.1\|WP_084674385.1\|247581_248307_-\|queuosine-precursor-transporter	gnl\|CDD\|376842	pfam02592, Vut_1, Putative vitamin uptake transporter.	7.29682e-51
NZ_LT906467.1\|WP_038587797.1\|257782_258793_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235529	PRK05601, PRK05601, DNA polymerase III subunit epsilon; Validated.	1.76363e-133
NZ_LT906467.1\|WP_038587792.1\|255800_256502_-\|glutamine-amidotransferase	gnl\|CDD\|225974	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only].	2.30136e-93
NZ_LT906467.1\|WP_005297378.1\|243155_244331_-\|chloramphenicol-efflux-MFS-transporter-Cmx	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.02027e-59
NZ_LT906467.1\|WP_038587785.1\|252427_254602_+\|DNA-polymerase-III-subunit-gamma-and-tau	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_LT906467.1\|WP_038587766.1\|249207_249702_-\|ferritin	gnl\|CDD\|153113	cd01055, Nonheme_Ferritin, nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.	8.94032e-54
NZ_LT906467.1\|WP_051904680.1\|254709_255096_+\|YbaB/EbfC-family-nucleoid-associated-protein	gnl\|CDD\|234669	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein.	6.34097e-36

>NZ_LT906467.1|WP_038587766.1|249207_249702_-|ferritin
MDAKLRDVMNNQVTDEYLAAYLYRHLANEMDALSFPGMSAWFAEQAREECDHAMKFTQHLLDRGERVELKSIEIEAPQISSPVEAFKAALKHEKKVSEAIRKITRVADEVGDLESRSLLTWFLDEQISEESSVSEIIDQLELVGTDGSGILRIDAALGARDSSN
>NZ_LT906467.1|WP_038587763.1|248291_249197_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MPAGRYAPSPSGDLHFGNLRTAVLAWLFARQTDRACYLRVEDIDSERSSMESAARQISDLEALGLNFDPPVTYQSDNDERYRAALGKLDVYECYCTRRDIREAASAPHAQPGMYPGTCRDLTEAQRKAKRAELAEQGRMPALRLRAGCAEWSVRDFYAGEVVGAVDDVILRRGGNLNQAQAGDWAYNLAVVVDDGEQGIDQVVRGDDLMFSAPAQAYLAHLLGYAQPEYVHVPLVVNSEGRRLAKRDGAVTLREMLREKEIAEVVGQIAVSIGCPGVESVDGLLTDFDPGALPREPWVWSG
>NZ_LT906467.1|WP_084674385.1|247581_248307_-|queuosine-precursor-transporter
MFQQACPETTSPVVEYSLVTLPSTPPPATRSPYSVLLAVFCAVFLISNITAQKGVELGPLITDGAFFLFPISYVIGDVIAEVYGFKAARRAIFTGFGIAVLAVVSFYIAIWLPPAGFYDMQDTFAAVLGLVPQIVLASLAGYVVGQLSNAWVLQKMKDRFGMGHLWARLIGSTVVGEFLDTLLFCAIAASVIGIATPGDFINYVLVGFVWKTLMEVILLPVTYPTIAWVRGVEKRNAQPAK
>NZ_LT906467.1|WP_084674227.1|247286_247460_-|antitoxin
MGVFDKAKDALNSDKAEQVTDQGLDKAADAAKDKLGEDKHDKVDQVRDAADKKLGNE
>NZ_LT906467.1|WP_051904679.1|245706_247092_-|WHG-domain-containing-protein
MDVTAQDTSAPAAGSVEHRLLETAAQILGRGDKEALTLERAADQADIPLDEARALYADDPALFAGVTEFLNDRLRDYADRELAKLPEDVPIIKRVLANATGYFNAALDNPTYFAAYSHSQVTEDFPNIEDEIKRPLNPDTFPEVSARVLNLLVEAINELGHPIQEDLLITGTLALLSEAHGLAHLATFGIMRHLSPTAKRQTFQAAMNSMLSGMCNTMGEGNILRFDPDTIPGPVSEKWTTLAKDMPRGTKDEIREAILRGGAEEVVADGLANFSLANAAERAGIPLNTATQLFDGDQSLLRELEIYLDEANTQAIMRQASFVPDGSPSLTFIKAAGFGYIEYALNDPVGFVALIEISSRSIVPVSFDDEGGMAQPFDMGKAFTFLMNIVRDAISESEGPRSTWVLYTQMMALWAAVHGIAQLVTVGALRYRTPEFCFQVSSRIMDIGLRGMINALELRSN
>NZ_LT906467.1|WP_038593562.1|244944_245682_-|ABC-transporter-ATP-binding-protein
MERASVPAARAVDLVKTYGEGDTQVRALDGVNVEFRRGEFTAIMGPSGSGKSTLMHVMAGLDSATSGEVFLGDTELSSLHDGALTTLRRDRLGFIFQSFNLVPTLTAAENITLPTDIAGGTIDQEWFAQITRRLGLHERLNHRPAELSGGQQQRVACARALVSRPEIIFGDEPTGNLDSNSSTEVLRILRTAVDSDDQTVVIVTHDARAASFADRVIFLRDGAIIDELAHPTMDAILQVMAGIEG
>NZ_LT906467.1|WP_011113070.1|244352_244406_-|chloramphenicol-resistance-leader-peptide
MSGVPGALAVVTRRTIS
>NZ_LT906467.1|WP_005297378.1|243155_244331_-|chloramphenicol-efflux-MFS-transporter-Cmx
MPFALYMLALAVFVMGTSEFMLAGLLPAIATELDVSVGTAGLLTSAFAVGMVVGAPVMAAFARRWPPRLTLIVCLLVFAGSHVIGAMTPVFSLLLITRVLSALANAGFLAVALSTATTLVPANQKGRALSILLSGTTIATVVGVPAGALLGTALGWRTTFWAIAILCIPAAVGVIRGVTNNVGRSETSATSPRLRVELSQLATPRLILAMALGALINGGTFAAFTFLAPIVTETAGLAEAWVSVALVMFGIGSFLGVTIAGRLSDQRPGLVLAVGGPLLLTGWIVLAVVASHPVALIVLVLVQGFLSFGVGSTLITRVLYAASGAPTMGGSYATAALNIGAAAGPVLGALGLATGLGLLAPVWVASVLTAIALVIMLLTRRALTKTAAEAN
>NZ_LT906467.1|WP_000480968.1|242115_242952_+|aminoglycoside-O-phosphotransferase-APH(6)-Id
MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLKPIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATEIAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMMSNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDPRRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQTSY
>NZ_LT906467.1|WP_001082319.1|241312_242116_+|aminoglycoside-O-phosphotransferase-APH(3'')-Ib
MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG
>NZ_LT906467.1|WP_038587779.1|250603_251884_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MAHTPLTELTQEQLAELAKDVREQYAALKAKGLKLDLTRGKPSTEQLDFANELLELPGKDNYTDSAGTDVRNYGGAIGIPDIRNLWAEVLGVDPSLVIAGDASSLNIMFDLVSYSYMFGNNDSPRPWKDEEKLKWICPVPGYDRHFAITELFGFEMLSVPMGERGPDMDAVEELAKDPQVKGMWTVPTFSNPTGTVFSRETIERLAKMETGAPDFRIVWDNAYAVHTLTDEFPENPNVLEIAAAAGNPNRFWYMSSTSKITHAGSGVAFFASSAENLAWYKKIAGVRGIGPNKVNQLAHARYFHDAEGVRAVMRKHAGSLAPKFEAVDRALDERLGGYDIATWTQPEGGYFVSLDVPEGTATRVWELAKEAGINLTQAGSPFPLHDDPQDRTLRLAPSMPPLDEVAEAMDGVALCVLLAAIEQREA
>NZ_LT906467.1|WP_038587782.1|251873_252416_+|suppressor-of-fused-domain-protein
MRPNQAAEWLGSFFPAEPSLIDAPPAPFPALTAEGIAATCGFSEVDTGLALEGETGTDVRCELVVRGGVEKQLLGATLGAAAAMLLELGVPAQPGVGLEHLLDRVELPEGVSVRHGYLREPRLFDQGTPLVREPGRLTLLLELALLTDDEYAIATEQGEAVLERRMRRRGAAMADWHRDA
>NZ_LT906467.1|WP_038587785.1|252427_254602_+|DNA-polymerase-III-subunit-gamma-and-tau
MALYRKYRPATFGEVIGQEQVTVPLSTALDNGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGVCESCRSLAPGGSGNLDVMELDAASHGGVDDMRDLRERAMFAPAESRYRVFIIDEAHMISQSGNNALLKIVEEPPEHLIFIFATTEPEKMLGTIRSRTHNYPFRLLTPQAMRELLEGVVAEEGAKVEESVYPLIIRAGGGSPRDTLSVLDQLLAGAGPDGLTYDLALPLLGVTDLSLLDGAIDALAARDASAIFHTIDNVIESGHEPRRFALDLLDRLRDLLVVRTVPDAVGQGLVDAPVDRADVLRAEAEQFSPAQLSALATEVNDRIADLRGATSPRLLLEVMMAHLLTLGESVAAQPSAGAAGVGAPSGGNAGGTSGAGAAAAAAAAAAAAASGQVRSKSTPPPQPAPPVRKPEPAQPAQPAQPAQPAQPEPEQPKPAEPQPETSQPEPAQSEPAASPAGTESTDLDALYDRVVRDWTTLRQSVGERNKVAEIMLTEAKPLGMDGETLVIGHNTGALAERINSERNNADIVAVFEEKLGYRVAVRCVVGTSPEAANVQPRQQPRAEQVWNPNKGKGSNEPSPEEPAGAKPEEPTPPATPRPNPGAQARAEANDWKAAAQAASRKAAEKAQRERDEIPLPPEPMDDEPDYDPYASGAAPLPQDPAAAPYTREEEERDMAEQALSEEGTLDHRDATEVAMELLSKELGAKPL
>NZ_LT906467.1|WP_051904680.1|254709_255096_+|YbaB/EbfC-family-nucleoid-associated-protein
MTEPNMPTDMQDLIRQAAEVQAQLQQAQQELLATEVTGTAGGELVKVTMTGGAEITNLEIKPEAVDPEDVESLQDLILAAYRDAHNKAGQLAQEKIGPLTGGSGLGQQGGPTGGQPAGEGEIPFGGIF
>NZ_LT906467.1|WP_038587789.1|255172_255799_+|recombination-protein-RecR
MFEGPLQDLIDEFSRLPGVGPKSAQRIAFHLLKTEPEDIDRLRAALAAVRDGVTFCRICNNVSREEVCRICADSGRDATTVCVVEDAKDIQVIERTGEYSGRYHVLGGALDPLANVGPKDLAIAPLLKRIGGVLPDLEGEESPQVKEVILATDPDTEGEATASYLVRLLKDFPELTISRLASGMPLGGDLEFVDELTLSRALSGRLKL
>NZ_LT906467.1|WP_038587792.1|255800_256502_-|glutamine-amidotransferase
MAKQLTIGLILPDVLGTYGDDGNALVLRQRARMRGLDAEIRPFLLTDDITDDCDVYTLGGGEDTAQILAAERLTSSPGLQRAADRGTPILAICAGLQVLGHSFNAGGREVKGISLLDATTTPLSSRAIGEVITTPQAPLTAPLTGFENHMGGTVLGPDAQPLGRVTRGVGNLDGTAEGVVQGSVIATYMHGPVLARNPELADLLLARALGVDPAELTPLELDVVDELRAERLK
>NZ_LT906467.1|WP_038587794.1|256494_257772_-|DUF1727-domain-containing-protein
MNPRGRFSRIRTKTALAAAQLATSASRATGRGAGGMIGGLVAGAIDPNIMDGLGRGRPTVLVTGTNGKSTTTRMLVQALRTTHTVATNEGGDNMDAGIISALMAGQDANLIALEVDELHVPHVADSLNPNALVLLNLSRDQLDRVGEINKIERALRACVEAHPEMTVIANCDDVLMTSVAWGHPNVVWVAAGAGWVNDSVTNPRGAGSVVRTPDGDWYATEKLADGTEFRRPEPTYTVDKHSLTTPHGEVPMNLTLPGRANRGNAAQAVAAAVEAYDVPLDKAVRAVEGVDNVAGRYATVHLGEHEVRLLLAKNPAGWQEALTMLDRDADGVVIAVNAQQGDGADVSWLWDVKFEDFDGIAVNAAGERGTDLAVRLLYAGIEHELVHDVVKAIRACPPGRVEVLANYTAFRDLKRDMAKQEDYRG
>NZ_LT906467.1|WP_038587797.1|257782_258793_-|DNA-polymerase-III-subunit-epsilon
MTSNDPYPYVALYAQTTGIHPSTGRILTIDAVTFDDGGRVGEEFHTVINPGCDPGPRHTHGLSAHEVAQSPRFSRFLKTLDKLLDDRTLITFDAPTTWGFIVSEARRAMSAAARANRSRKKRNGRRRQRVGHVPRPTEIVDLLAVARRQGEIPTDLRINAVADVIGVASESPIASVERAGRPEAELSREQTLKLVAMFLQLRERGDVTGRTPDELAPDRFGLQRSTVRVDAENAGAAADNPGKYTKESGLKKGMVVVVTDDVALEPDTLIDAAVRAGLTYTEKLGRESSVVVSDALAKGAELRGKAMHGHRKDIPILTGEEFLQAVEEMGSAISVD
>NZ_LT906467.1|WP_038587800.1|258828_259965_-|hypothetical-protein
MRTPNYVVPDHGIGAVHSIPTIDVDTALVARLLDNAGADTTDVQVTLLQRGEDLGFYVEHNGSILSTFPEEEALEYPELAHITAANLTPEVTARAERFDEGGVALSLRLPRPGLCIPANEPPLEPWALLEGNGPRTVLYYPDAAERDVDDCMSLLVRIEFDKAGDVVASLGNGVVGRLDSRTASEITPTLRNLERRGLAMAVRGYHAPAAGGAKLTVDLDGVQELGAPQALSPVPYLPLAEAERLPELVSVGASTAASVGGAEHHEAQAPEAPPAPPVTAPDAQFKADQDAAQAALAAESTPEAPSQAEQDEAERIAQLKHALHPICLTAGAILILLIVAGVIAISSQWVGDNNAMPAYEPPVAEAQEEAPSESAPAE
>NZ_LT906467.1|WP_038587803.1|260316_262152_-|2-isopropylmalate-synthase
MTNADEFFVPREIRTPDGPKNEGQPAWNKQRGSQMPVDRYLSFAEEVEDITLPDRTWPDKKITVAPQWCAVDLRDGNQALVDPMSPERKRRMFNLLVEMGYKEIEVGFPSASQTDFDFVREIIEQDMIPDDVTIQVLVQAREHLIRRTFEACAGAKNVIVHFYNSTSKLQREVVFRKDRPAIKKLATDAAELIKTIAEDYPDTNWRWQYSPESYTGTELEFAKEVCDAVVDIMEPTPADPIIINLPSTVEMISPNVYADSIEWMHRNLAHRESIILSLHPHNDRGEGVAAAELGYMAGADRIEGCLFGNGERTGNVDLVTLGLNMLTQGVDPQIDFSDINKIRQTVEYCNQLRVPERHPYGGDLVFTAFSGSHQDAINKGLDALAQRVRPNASSNDVSWEELRETTWEVPYLPIDPKDVGRTYEAVIRVNSQSGKGGVAYIMKTDHGINMPKAMQPEFSAIVQSITDSEGGEVNSKNMWDIFAGTYLDLDTPLELVDYEVTGAVAEDDDSAVQVTVEYRGERHEIHGTGNGPIAAYANALESLGIDFEVQDYSQRARTAGDDADAACYIYADVDGTSAWGVGIAGSTTRASLKAITSAVNRGLTEGKTGGV

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Crispr_ID: NZ_LT906467_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_2

294307-294399

Orphan

Consensus_repeat	Method
CTAAACGGAGCTAGCTCCATTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906467_2

>merge|NZ_LT906467|2|294307-294399|CRISPRCasFinder
CTAAACGGAGCTAGCTCCATTTGGGTGCGGCGCGTGTGGAAAACGCCTGGTCGTGAGAATCTGGAACTGCTAAATGGAGCTAGCTCCATTTGG

>NZ_LT906467|2|2|294307-294399|CRISPRCasFinder
CTAAACGGAGCTAGCTCCATTTGG	GTGCGGCGCGTGTGGAAAACGCCTGGTCGTGAGAATCTGGAACTG
CTAAATGGAGCTAGCTCCATTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038587855.1\|288516_288987_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100006
NZ_LT906467.1\|WP_038587888.1\|300873_301458_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|366122
NZ_LT906467.1\|WP_051904683.1\|290894_291713_+\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_LT906467.1\|WP_095066741.1\|288356_288512_+\|DUF4177-domain-containing-protein	unknown	unknown	gnl\|CDD\|379366
NZ_LT906467.1\|WP_038587895.1\|301741_302029_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038587863.1\|291716_292298_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_LT906467.1\|WP_051904685.1\|297927_298959_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274798
NZ_LT906467.1\|WP_038587860.1\|289894_290578_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_LT906467.1\|WP_051904684.1\|294423_295119_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_LT906467.1\|WP_038587850.1\|285236_287663_-\|transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223815
NZ_LT906467.1\|WP_038587866.1\|292290_293016_+\|CoA-pyrophosphatase	unknown	unknown	gnl\|CDD\|239518
NZ_LT906467.1\|WP_038587875.1\|295911_296928_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|370148
NZ_LT906467.1\|WP_038587885.1\|300082_300877_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|227300
NZ_LT906467.1\|WP_038587891.1\|301507_301741_+\|DUF4244-domain-containing-protein	unknown	unknown	gnl\|CDD\|379429
NZ_LT906467.1\|WP_038587869.1\|293080_294274_+\|MarP-family-serine-protease	unknown	unknown	gnl\|CDD\|379142
NZ_LT906467.1\|WP_084674228.1\|296934_297783_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|319796
NZ_LT906467.1\|WP_038587852.1\|287937_288315_+\|WhiB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376791
NZ_LT906467.1\|WP_038587858.1\|289006_289819_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293836
NZ_LT906467.1\|WP_038587882.1\|298958_300086_+\|TadA-family-conjugal-transfer-associated-ATPase	unknown	unknown	gnl\|CDD\|200328
NZ_LT906467.1\|WP_038587872.1\|295188_295704_-\|phage-holin-family-protein	unknown	unknown	gnl\|CDD\|377816

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038587855.1\|288516_288987_+\|RidA-family-protein	gnl\|CDD\|100006	cd02199, YjgF_YER057c_UK114_like_1, This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	4.52717e-65
NZ_LT906467.1\|WP_038587888.1\|300873_301458_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|366122	pfam00482, T2SSF, Type II secretion system (T2SS), protein F. The original family covered both the regions found by the current model. The splitting of the family has allowed the related FlaJ_arch (archaeal FlaJ family) to be merged with it. Proteins with this domain in form a platform for the machiney of the Type II secretion system, as well as the Type 4 pili and the archaeal flagella. This domain seems to show some similarity to PF00664 but this may just be due to similarities in the TM helices (personal obs: C Yeats).	1.275e-06
NZ_LT906467.1\|WP_051904683.1\|290894_291713_+\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	7.38991e-100
NZ_LT906467.1\|WP_095066741.1\|288356_288512_+\|DUF4177-domain-containing-protein	gnl\|CDD\|379366	pfam13783, DUF4177, Domain of unknown function (DUF4177).	0.000725366
NZ_LT906467.1\|WP_038587863.1\|291716_292298_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	2.43972e-21
NZ_LT906467.1\|WP_051904685.1\|297927_298959_+\|hypothetical-protein	gnl\|CDD\|274798	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see ). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.	5.43455e-33
NZ_LT906467.1\|WP_038587860.1\|289894_290578_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	9.66077e-55
NZ_LT906467.1\|WP_051904684.1\|294423_295119_-\|alpha/beta-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.7571e-12
NZ_LT906467.1\|WP_038587850.1\|285236_287663_-\|transglycosylase-domain-containing-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	2.25316e-118
NZ_LT906467.1\|WP_038587866.1\|292290_293016_+\|CoA-pyrophosphatase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	5.27986e-46
NZ_LT906467.1\|WP_038587875.1\|295911_296928_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|370148	pfam08840, BAAT_C, BAAT / Acyl-CoA thioester hydrolase C terminal. This catalytic domain is found at the C terminal of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases (BAAT).	1.27149e-18
NZ_LT906467.1\|WP_038587885.1\|300082_300877_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|227300	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion].	1.86308e-23
NZ_LT906467.1\|WP_038587891.1\|301507_301741_+\|DUF4244-domain-containing-protein	gnl\|CDD\|379429	pfam14029, DUF4244, Protein of unknown function (DUF4244). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 66 and 95 amino acids in length. There is a conserved EYA sequence motif.	2.25197e-15
NZ_LT906467.1\|WP_038587869.1\|293080_294274_+\|MarP-family-serine-protease	gnl\|CDD\|379142	pfam13365, Trypsin_2, Trypsin-like peptidase domain. This family includes trypsin-like peptidase domains.	4.84111e-19
NZ_LT906467.1\|WP_084674228.1\|296934_297783_-\|HAD-family-hydrolase	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.98661e-56
NZ_LT906467.1\|WP_038587852.1\|287937_288315_+\|WhiB-family-transcriptional-regulator	gnl\|CDD\|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	5.44556e-25
NZ_LT906467.1\|WP_038587858.1\|289006_289819_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293836	cd16278, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	7.92354e-70
NZ_LT906467.1\|WP_038587882.1\|298958_300086_+\|TadA-family-conjugal-transfer-associated-ATPase	gnl\|CDD\|200328	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.	9.60208e-150
NZ_LT906467.1\|WP_038587872.1\|295188_295704_-\|phage-holin-family-protein	gnl\|CDD\|377816	pfam07332, Phage_holin_3_6, Putative Actinobacterial Holin-X, holin superfamily III. Phage_holin_3_6 is a family of small hydrophobic proteins with two or three transmembrane domains of the Hol-X family. Holin proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion.	4.66843e-34

>NZ_LT906467.1|WP_038587869.1|293080_294274_+|MarP-family-serine-protease
MTGHAIVDVVAVVLILAAVISGWRQGLIAAIFTALGSVAGLVAGYFAALLAVNYVDGQGMRTIVFLSVVVVFVGLGNLAGSYAGDTLRPSARWLPARVLDSVAGAALQAIATALALWIVTVPLISGLPEQPSEALRQSRVLSLIDATIPESFVQLPAKMSSLLHETGMPPLVSPFRTDAANEVDAPNPDAVTPELVEASRPSVVHVVGDSQTCHHRLMGSGFVIAEDYVLTNAHVVAGTQSVSLDTVVGVKPADVVFYDPEVDIAVLHATSLGLPELQWAERELRHGSDAVVMGFPDSGPFAATAARVRNKLEISGPDIYTTGRIERSAYTIRGDVRQGNSGGPLLDTEGQVAGMIFGTATDVDETGYALTGAQVRERVGEVEKLATPVDTRSCVVG
>NZ_LT906467.1|WP_038587866.1|292290_293016_+|CoA-pyrophosphatase
MLNDVALQPEHAPQWLTPLVEKLQHDTHRSRARRLLGERVPQGAPEGDDEAAVLILFTGDADAATVPDDAHVLITHRTPRMRSHSGQMAFPGGHIDAGDRGPVDAALREAWEETGLDRSRVVPLATLSTVTTGGSGRRVRPVVAYAARPGETYVASPFETDDVFFMAVHDLVDPVNRLQVGRGRYAGPAFRTGCYVVWGFTAALLSVLLEQAGWARAWDRTVHDLDAVLARSCNGEPRYAR
>NZ_LT906467.1|WP_038587863.1|291716_292298_+|TlpA-family-protein-disulfide-reductase
MKKTVWASVIGAIVVACALVAGALFLLRPAETGEVDGGEDVASRSEEAPVAERPDCVAGGVGGVELPCLGGAEVPGEHKPVTVVNVWAWWCEPCRAELPVLERYADNHPDYDVVGVHADANAANGAAFLNDIGVELSSYQDDSNAFAGTLGLPGVVPITVVFRDGQKIGALAKAFETEEELARAVEEVLAGNA
>NZ_LT906467.1|WP_051904683.1|290894_291713_+|endonuclease-III
MSHTPAPEPRTPLPTPQRRRRPGTHPAAKGTETPLGRKRRARRINRTLALTFPDARAELDFSNPLELLVATVLSAQTTDVRVNQVTPALFAAYPTAADYATADVVEVEELIRPTGFYRAKAANLVNLGKKLVTDFGGEVPEALEDLVSLPGVGRKTAHVVRGNAFGKPGLTVDTHFQRLVGRLKLSEQQNPVKIEREIAELIEAKEWTMFSHRLIFHGRRICHARTPACGACPIAFDCPSFGAGPTDPGEAEARVTGLEREHILALVHGEEA
>NZ_LT906467.1|WP_038587860.1|289894_290578_-|Crp/Fnr-family-transcriptional-regulator
MEGIQDTLAKAGIFQGVDAEAVDTLINEMETVTFARGTTIFDEGEPGDRLYIIVDGKVKLARHAPDGRENLLSVMGPSDMFGELSIFDPGPRTSSAVCVTDVTAATMDSEMLKDWIAQHPEISQQLLRVLARRLRRTNASLADLIFTDVPGRVAKTLLQLANRFGVQEGGALRVNHDLTQEEIAQLVGASRETVNKALATFAHRDWIKLEGKSVLIVNTEHLARRAR
>NZ_LT906467.1|WP_038587858.1|289006_289819_+|MBL-fold-metallo-hydrolase
MKHPAYSQLRPVTTSAAVVLAPNPSYAALEGTNSWVIRDPEDEYSIVVDPGPADEGHLNVLQAKADKVALILLTHRHHDHADGAERFRQLTGAPIRAFDPQYCNGAEPLEDGEVISVEGVTPKVQVAHTPGHTKDSVCFFVYTHEVEDGELEGIITGDTIAGRHTTMISETDGDVGEYLDTLEMLESRGKDVMLLPGHGPENEDLSQFARKYIDRRNQRLEQIEQALKEHGADADINTLVDAIYDDVDPVLRGAAEQSTRVGLRYLQNQK
>NZ_LT906467.1|WP_038587855.1|288516_288987_+|RidA-family-protein
MTATWTAKLSELGIELPNVAAPVAAYVPATKVGNQVWTSGQLPLIDGALPATGKVGAEVSEEDAYGYARQAALNAIAAVDALVGVDNIARVLKIVGFVASDPSFTGQPAVINGASDLMKEVFGDAGEHARSAVGVAVLPMDTPVEVELVVELKEDA
>NZ_LT906467.1|WP_095066741.1|288356_288512_+|DUF4177-domain-containing-protein
MKKWEYATVPLLTHATKQILDTWGEDGWELVSVTPGPNPDNVVAYLKREVE
>NZ_LT906467.1|WP_038587852.1|287937_288315_+|WhiB-family-transcriptional-regulator
MTTTLGRTGLQGGYKGIRAASTTSRKSDAAGNLEFDRGEWVTQAHCRNGDPDALFVRGAEQRKAAVICRRCPVQMECCADALDNKVEFGVWGGLTERQRRAVLRKNPHVTDWAEYLSSGKEIEGL
>NZ_LT906467.1|WP_038587850.1|285236_287663_-|transglycosylase-domain-containing-protein
MSALSSFGKLLAALVAAGVAIALCLAPLAGLGGMAIARTDETMQSNLSDMSGGDVPGVTTIADTHGTPIAWIYNQRRYEVPSEKISQYAKDALVSTEDRRFYQHEGVDMQGFARAMVTNVLAGGVEQGASTIDQQYVKNYLWLVEAQDEDAARAATEQSIPRKLREMRMASDLDKTLEKDEILTRYLNLVSFGNHAYGIEAAARTYFDTSAAKLTPDQAALLIGLLQSVEYLNPYTNPEGATARRNTVLNNMAAQGYLEQAEADRLAGKPLGIVDKPRMLPDGCLTAEDSGFMCDYVLRYLADKGLPQEELERGSYTITTTLDPEVQAATVRAARNNVSPYTHGVAEVINVIKPGTDSRDILAMASSRYYGLELEQSQTIMPQPTSMVGNGAGSVFKIFTAAAALEQGYGLDTMLETPTRSVVYGMGKGGAANCPPDAYCVENAGVYKPRLSLRDALAQSPNTTFIELVQQVGVPRTVDIAVRLGLRSYLDENSFGDGRSVAQAAKDDNMGAFVLGPTAVNALELSNVGASLASNGRWCEPNPVKSVRDKHGQEVYIERPACEQAIDPEVAGALAQGMSHDTKSGTAKDAAAANGWTAPVAAKTGTTESHQSSAFLGFTNGMAAASYIFNDGTQTTPLCSAPVRQCSYGNLFGGNEAANTWFQTAHGVPGAAAAGIPSPSRNFDRGTKRGAIDDVVGMDATAARSRLQGQGYTVTVSMVSGGGAPFNSVVSAVPADPNLPPGSLITLNVSDGSGTPSAPASTASAAPSPSAPSSAPAPQANQAPVDLSDIERQLSDAADSLTNMLGGN
>NZ_LT906467.1|WP_051904684.1|294423_295119_-|alpha/beta-hydrolase
MLHTRGVRLHAAVAGEPTNPLILLLHGAYGGWFDFRHAIAPLASLGYHVAALDQRGFGLSDKPAPRSGDTLHLLRGDLKGAIATLGHTEATIIAADTGVVIASALAEAAPQLVRGILTLPAEPPLPLLLRHAPARVLQRLPRGHDVLDRAWRSSFARALAATDQTTADAEEALALRLRARRIDNALPHIMATHRLRGRGGDAHAESLDLGPLEHVVAPQAFVAAVGQRLDA
>NZ_LT906467.1|WP_038587872.1|295188_295704_-|phage-holin-family-protein
MSNDGLYTSGSTAVSGKVDSIPLRDTDTTQPGRDSIGTLVSNATEQVSTLVRSEIELAKTEIVGEVKKGAVGGGLFAVAGVIALYSSFFAFFALAEMLASWMHRGWAFLIVFLIMIALAGLLAFIGFKKVKKIKAPEKTIESVNELKHLRPGQAQKNLTKDSSGLYTSVEK
>NZ_LT906467.1|WP_038587875.1|295911_296928_+|dienelactone-hydrolase-family-protein
MKALKVLGKIFLALVAALLILALVVVGLRAYNHHTYPVMSQGAGGEGKAREEASISTAPIEGEQVSGVHLTPAENTRPGVVVVYGGSEGGRDAPRAQWLASEGFEVLSMHFFGQEGQEPLLANVPLEQFDEVSDYIAEHVDGGPVTVIGTSKGAEFAELLAAKGFAVDNLVAFVPAHYSYSGLGEQGRYEEPSFTHQGEAVPFGSFRTGSIAVGLKLAWDMATGYPPSYRATYENAAEHAEDAARIDLSEFAGNVLLFAGEADQMWQSDVAARELEQQGEHIEAHVYPDAGHIFFADSEQEPHGWQIMFGGTPAGNKAAYEDSREVLLERLTQWHAAE
>NZ_LT906467.1|WP_084674228.1|296934_297783_-|HAD-family-hydrolase
MRRPYRGFGVRLTLMATLKPVAAFFDLDKTIIATSSAYAFGKEFFNNGLITRQDALDLYLSKASYMLVGHSSDQMDASRDHLSQLIKGWDVDEVTRITTDTMHHVVAPAIYSEARELIEEHRAAGHEVIIISASADILVEPIAAELGVDTVVATALEVVDGKLTGTILRYLKGDAKAEAIEQFAREHDYDLARSYAYSDSATDIPMLAAVGNPVAVNPDRALRKHAMSQGWQLRTFKNPEPLIQMPNAREVGIGAGVIAGLTALAVVGTLVTRAVIRENRSA
>NZ_LT906467.1|WP_051904685.1|297927_298959_+|hypothetical-protein
MNQAKETNRNWGRTIVVAVDDPLLHPEATHLAAAAGHAIVDVTDPGMLAAYAEKAFALLIDATWAPHLAQRRHRNVFVVAGSLDAAEAYPGAFVLPAQAGDLLVALGELYRTPERTTETGTIVAVLGAGGGVGASVLACALARSRADAATLIDGHRLSGGLDLLLGIEEHPGARWGEIALGEGAVERADLRRALPATKDGCAVLTFARSTVVDPFRLTLGELDRVCAAVGTSGLTVLDIPVDLLPARCDLAVIVVAPTVRSVCAASQLVLECNAAGVPHTLLLREGTWQGIDEHGVARATGSRICQRVPTLRRLPRAVDTAGLPARLPAPLRRAADAVLAEVA
>NZ_LT906467.1|WP_038587882.1|298958_300086_+|TadA-family-conjugal-transfer-associated-ATPase
METSEILSRVQRRLADEHTHPSPDRLAALIREEAVVISDLDVLALMRKLRDDTTGAGPLEPLLAAGDVTDICVNGPDQVFADRGHGLERCEITFETEEAVRALATRLALSCGRRLDDAQPFCDGHLTRDDGTLLRFHAILSPTAKVGTCLSLRVLRTATASLDELEARGSIDGEVAGVLRQMVARRRAFLIVGGTGSGKTTLLSALLAEADPVERIIAIEDTLELTPHHPHVLNLTTRAANAEGAGAISIADLVRQALRMRPDRIVVGEIRGAEVVDLLAALNTGHDGGAGTLHANSIHEVPARLEALAALGGLDRAGLHSQLAAAVDAVVVVKRGPDGRRFVHQLGVLEGQPVATRVVWDSETGATEGFEELIR
>NZ_LT906467.1|WP_038587885.1|300082_300877_+|type-II-secretion-system-F-family-protein
MNPLVFLAAAAALHAPAPAGRLGADAGQPRQRGWRSARVQAWAWSGVSVAAFGLIVAERITVVIAVALAGATAIDAVLRRRQQRMKVRGARVTADFLGHVVSNLDAGAPLERACVTAADRLPDDAPPQLQRDIHRLNRRLRAGQSVGTAVESEQPELQRLVTLWQLAQRRGVPVANLLRTARDELDRAQRHRAATTAALAGPRTTATVLAALPLAGIGMGAAMGANPIGLLTSGGLGGILLVVGTALVCAGIWLSRLIIERAAQ
>NZ_LT906467.1|WP_038587888.1|300873_301458_+|type-II-secretion-system-F-family-protein
MISLTTTLFLAAALALPPVSPDVRVKYLRGEGPKTPRDGPRGAAPPVSAHRAAADITLFAACCEAGLPLATAAAAVADTYEESDGEPGSAWHTVAALTALGVDPGRAWNELHPLPGGAELAGLVALSNSSGSAIVAGCSRIVERLQAEAADEAKEKAERAGVLIAIPLTACFLPAFFVLGLAPAVISLGSAMLH
>NZ_LT906467.1|WP_038587891.1|301507_301741_+|DUF4244-domain-containing-protein
MNAITIEALKVSHLLRSYAAQKAEKLREDSGMSTIEYAFGSLAAAALAGVLYLVVNGDGVTSAIEGVITDALTNTPT
>NZ_LT906467.1|WP_038587895.1|301741_302029_+|hypothetical-protein
MTSIETALSLSALVTVAAAIVAGIATVATYIAAVDTAGAAARAHAIGVNYEPVRGHVDVTESGGVVTVTANVPAALGHMRATARYPVEYTTGGAK

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Crispr_ID: NZ_LT906467_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_3

317582-317753

Orphan

Consensus_repeat	Method
GCATTGTCCAAACGGAGCTAGCTCCATTTGG----GCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_LT906467_3

>merge|NZ_LT906467|3|317582-317753|PILER-CR
GCATTGTCCAAACGGAGCTAGCTCCATTTGGACCAAGACCGGGCACAAAACCCCAGGTCGCCCTCACCAACCACTCCCAAACGGAGCTAGCTCCATTTGCGCCCGATCGCCCCATAAAATCCCAGGTCGCGCATCGCCGCATTGTCCAAACGGAGCTAGCTCCATCTAGGCC

>NZ_LT906467|3|1|317582-317753|PILER-CR
GCATTGTCCAAACGGAGCTAGCTCCATTTGGACC	AAGACCGGGCACAAAACCCCAGGTCGCCCTCACCAACCACTCCCA
AACGGAGCTAGCTCCATTTGCGCCCGATCGCCCC	ATAAAATCCCAGGTCGCGCATCGCCGCATTGTCCA
AACGGAGCTAGCTCCATCTAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038587911.1\|310605_312132_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143636
NZ_LT906467.1\|WP_038587937.1\|322980_324081_+\|S-(hydroxymethyl)mycothiol-dehydrogenase	unknown	unknown	gnl\|CDD\|132492
NZ_LT906467.1\|WP_051904689.1\|318940_320611_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236097
NZ_LT906467.1\|WP_038593594.1\|306013_306640_-\|VTT-domain-containing-protein	unknown	unknown	gnl\|CDD\|223659
NZ_LT906467.1\|WP_038587914.1\|313652_313940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038593597.1\|312175_313396_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236134
NZ_LT906467.1\|WP_038587921.1\|315148_316303_-\|IS1249-family-transposase	unknown	unknown	gnl\|CDD\|226202
NZ_LT906467.1\|WP_051904686.1\|309795_310596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038587947.1\|326978_327704_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_LT906467.1\|WP_038587924.1\|317786_318941_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT906467.1\|WP_038593606.1\|325881_326583_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372611
NZ_LT906467.1\|WP_038587930.1\|321631_322591_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038587940.1\|324106_324733_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_LT906467.1\|WP_038587918.1\|314080_314425_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038587927.1\|320811_321648_+\|hydrolase	unknown	unknown	gnl\|CDD\|238861
NZ_LT906467.1\|WP_162472531.1\|306882_309795_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_LT906467.1\|WP_034996968.1\|304957_305161_+\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_LT906467.1\|WP_038587933.1\|322587_322923_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_LT906467.1\|WP_038587944.1\|326616_326982_-\|DUF2304-domain-containing-protein	unknown	unknown	gnl\|CDD\|378376
NZ_LT906467.1\|WP_051904688.1\|316802_317522_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038587911.1\|310605_312132_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	1.51404e-45
NZ_LT906467.1\|WP_038593594.1\|306013_306640_-\|VTT-domain-containing-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	6.2042e-19
NZ_LT906467.1\|WP_038593597.1\|312175_313396_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	8.9816e-162
NZ_LT906467.1\|WP_038587933.1\|322587_322923_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.28618e-21
NZ_LT906467.1\|WP_051904689.1\|318940_320611_-\|AMP-binding-protein	gnl\|CDD\|236097	PRK07788, PRK07788, acyl-CoA synthetase; Validated.	0
NZ_LT906467.1\|WP_038587947.1\|326978_327704_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.26809e-44
NZ_LT906467.1\|WP_038587924.1\|317786_318941_-\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.91964e-15
NZ_LT906467.1\|WP_038593606.1\|325881_326583_-\|DsbA-family-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.39856e-37
NZ_LT906467.1\|WP_038587940.1\|324106_324733_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	2.72003e-47
NZ_LT906467.1\|WP_038587927.1\|320811_321648_+\|hydrolase	gnl\|CDD\|238861	cd01823, SEST_like, SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.	6.00752e-19
NZ_LT906467.1\|WP_162472531.1\|306882_309795_+\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_LT906467.1\|WP_038587921.1\|315148_316303_-\|IS1249-family-transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000118025
NZ_LT906467.1\|WP_038587937.1\|322980_324081_+\|S-(hydroxymethyl)mycothiol-dehydrogenase	gnl\|CDD\|132492	TIGR03451, S-hydroxymethylmycothiol_dehydrogenase, S-(hydroxymethyl)mycothiol dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. [Cellular processes, Detoxification].	0
NZ_LT906467.1\|WP_038587944.1\|326616_326982_-\|DUF2304-domain-containing-protein	gnl\|CDD\|378376	pfam10066, DUF2304, Uncharacterized conserved protein (DUF2304). Members of this family of hypothetical archaeal proteins have no known function.	4.37616e-25
NZ_LT906467.1\|WP_034996968.1\|304957_305161_+\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.76251e-37

>NZ_LT906467.1|WP_051904688.1|316802_317522_+|hypothetical-protein
MDINDYADAPGMVRGVEVTLPCFSVIYTVYEDNYIILEASASAAVEVDVDLLFDRFRWAELSLGFASTGGSLDEGVSSGLWELNDVTRNMNKELQAIQVHVNVRSAEGRLPLRQLFAVWDLALPVAIISDLRSVAMKRISRPGISPVQRNPFPDFYSRDCLEDVDKESWASAVALVDHVVVRHHTPEQGTIALKVRGEKTKEATFYAEGFRPVIISRDFESILGGLPLEEEWSIAAIRI
>NZ_LT906467.1|WP_038587921.1|315148_316303_-|IS1249-family-transposase
MGTTSSGTQRWRCTHCGHTFTNPNTAKTSAYRFSVFIDWITGQRPLDAVAAAHNVSRRTLIRWFTYFWFIIVPCKPDPYRVYDQLFIDGTYFHKKCLLVAATSEHVVAWHWCTRETAYDYAKLFDLIAEPLVVTTDGSGGAHKAIKQCWPNAAIQRCLVHVRRDTIKDTTRQPTLTAHKALLRLGNQLTHITTRDQAIDWALRLNRFHDLYGDWLKDRTYRNQVAPEEIPKRIRDNQQWWYTHPRARRAYRRFERLYQQGHLFVWLNPPHRTTTELKTTTNSLEGGVNAQLKHLARAHRGAFDEHQRIIMDWWLYLHTQHHDDPLALAIEQDFGHAGYAHARQAHMRERDQANSPDGRPKVYDTGIDTDFNPSWAIRHGWAGRS
>NZ_LT906467.1|WP_038587918.1|314080_314425_-|hypothetical-protein
MKLLKTPLWNLEGGEPVDVDHHVVRIKLYKDEVVAEFTISELCSFFGLKDLHCLRLQFEVWHELASFEWDSEECVHLEQKPFTDYFHASKISHCYAPPSPDADRGGWEWGMKKL
>NZ_LT906467.1|WP_038587914.1|313652_313940_+|hypothetical-protein
MVYLALGAVVALFISLCIMALGYLVHLSAKRKVLSPYRFLVVMVVLAPVFLIYDILSDEMCSGLFNYAVSGYLITAVIISSLWRIIADGSSEAPE
>NZ_LT906467.1|WP_038593597.1|312175_313396_+|DNA-polymerase-III-subunit-delta'
MPQFRSVAERLADAPNVREVILAAASAAREQLLIDGTRQDYAMTHSWLFTGPPGSGRSQAVLAFAAALVCTDPNEVGCGRCKGCRDALAGQHTDIVHVVPKELIIKTEYIREIVAQAARMPTVAPYRVLIIENADRLHPAAADALLKTVEEPPERTVIILLAPSTDPEDFSQTLRSRCRHLYIPSPSEAELVHILMQEEGATEHDARLAAATSLRHVGRARLLVRSPEIQQRRAQAINMAELIFQGAYAFQAVGSLIKATEKEAVDSYAEEDAAERAKLEQALGMGAKGKGAAKALRGAASSLKELEARQKARSTRRKRDVFDLVLVDLAGVYRDALVVQSGADVPLTHPDFEPLARELAERVPASDLVACLDAIAQCRARLHQSVTPAVAFNGMIGHLRVACGVR
>NZ_LT906467.1|WP_038587911.1|310605_312132_-|adenylate/guanylate-cyclase-domain-containing-protein
MNRFWHGLRWVWGTSWPLYAASVLGTNLLGAAAIMAFIRFFIPMPETEQLALDSSTLGLIGLAYVAFAVVFGMVVTFFLFRPVLEWQHRPQDHDPNMVRRLVLRLPVLQTLIVVAVWLIGITILTALTARTSGRFAVVIFVATSMACFVTAVLTYLQAERLVRPIAAAALARRFEDATLEPPIKQRLYMTWFTTSAVPVLGIVLLFLAQSRGYFTNIPGELQPAVFVLALSAMVTGAFGTAFVIMSVVDPIKELQDAINRVRRGEINTQVDIYDGSEIGVLQAGFNEMMRGLRERQRVRDIFGRYVGSEVAQKALEEKPELGGEDRKVAVVFVDVVGSTTFAVNHTPEEVVAALNDFFEVVVEVVHRNKGVINKFQGDAALAVFGAPVSLHDAASHALQAARELRQELNGLELEAGVGVASGHVVAGHIGGHDRFEYTVIGDAVNAAARLTELAKGVPGRVLTNAATLRAANEVEQQRWTLMKSVELRGRNKMTQLARPVRSTLADRY
>NZ_LT906467.1|WP_051904686.1|309795_310596_+|hypothetical-protein
MLTRTRRGVAALIDALLPHSSLTPERAAWAVSADAAGIAQCAGWKKTALVAEPLTRVALAAVPLRVSRSEAERAGDSTVAPDSAPDADPVLTCAVLASAVAAFEQERVPHSPSALGVASLVGAQAGYLTRLLQRDAAVGRVRLAVAVGAVAAGGAVAAWADRRLLPATLIGGAAVAATAAAANDPLFRADTNDPAREGLSHGANLLLGAEGLRLLTNAGLVGKACDAAGVPTWIGERGARAAVSWAGSIGQLLLVHGLSAPAAGRD
>NZ_LT906467.1|WP_162472531.1|306882_309795_+|type-I-DNA-topoisomerase
MTGNGKTLVIVESATKAKKIQKYLGEDYIVEASVGHIRDLPGRAADIPAKYKKEPWAKLGVNPDAGFSPIYVVSPDKKKKVSDLRAKLKECDKLLLATDPDREGEAIAWHLLETLKPKVPVERMVFNEITESAIREAAENTRELDMDLVEAQETRRILDRLYGYEVSPVLWKKVMPRLSAGRVQSVATRVIVERERERMAFIAAEYWDITASLIPQQGEKTEFDAKLATLDGQRVAQGRDFDDRGRLKGEAVVVDKQRAHSLADGLQGRPMHVTAVEEKPYTRRPHAPFMTSTLQQEAGRKLHFTSARTMRIAQRLYENGHITYMRTDSTSLSKQGLQAARSAATELYGASFVSKSPRTYDRKVKNSQEAHEAIRPAGERFATPGQLGSALDAEEFKLYELIWQRTVASQMADARGNSTKVTVAGEAESGERAEFTATGRTITFPGWLRAYSDTNDKETHLPQLHEGDALDATKLSADEHTTNPPSRYNEASLVKKMEDLGIGRPSTYASIIKTIQDRGYVVTRGNALVPSWVAFSVIGLLENNFDALVDYDFTSSMEDELDEIAHGNEDRTEWLTGFYFGDADADENMAEAVARRGGLKHIIEANLESIDARQVNSLKLFEDAEGRDINVRVGRYGPYIERQVGVTEEGEPEYQRANLPESSTPDGITLELAEKLFATPQSGRELGENPANGRMVVAKEGRYGPYVTELVRDDERETAEAHAEEVIAAERAEEDKQRAEEGKRKKNWETKTAAKQKEKRLGELVNEQLKPATASLFKSMEPSSVTLEEALKLLSLPREVGTDPADGEVITAQNGRYGPYLKKGTDSRSLASEDQIFAITLEEARRIYAEPKRRGRAAAKPPLKMLGDNDVSGKPMSIKDGRFGPYVTDGETNASLQRGDTPETVTDERANELLSARRAREAEEGPKKATKKKATKKKATKKKATKRAKKTVKKPTQTTKRVIKAGSRRK
>NZ_LT906467.1|WP_038593594.1|306013_306640_-|VTT-domain-containing-protein
MIDPFIDFLHMLMGTPLFYPLVTLLIVADALAPIVPSETVLNLAGAFAASQGVPSVKAVIAAAIIGAIIGDNLCFALGARLIGFVERLDPESKAGQAILWVRRNMHRGAGPTIIVGRFLPWARWVATIVLGSVRYNWFAFLFYDTIGVIIWAILSVGIGYAGGALFSDIPLLGMVVGVLLGSLVGFGIQKLQGKFFDWRDERRGQSTL
>NZ_LT906467.1|WP_034996968.1|304957_305161_+|cold-shock-protein
MATGTVKWFNAEKGFGFIAPDDGSSDVFVHYSEIQGSGFRTLEENQQVEFEVGEGAKGPQAQQVRAL
>NZ_LT906467.1|WP_038587924.1|317786_318941_-|MFS-transporter
MTRATYALTLAFLITAGWSANHFASVLVLLRRDHDVSAVLANSAYGIYAVGLFPSLLIGGWVADRFGSRPAVIAGTVIAAAGNVYLMLGIPGHGLLLGRFIVGLGVGLVVSAGTAWAGRLRGASGATAAGIALTTGFMLGPVSSGVVAHLAADAVKVPFVVPIVMAVGVMVASISMRDVGAPAVTQTAEARPAHSEAKALATAVPMGIWVFASITTAMVVLAGRTDFAIGAAFMPGVAAVLGFSVALAMQALARRGQWGPRAGVVGALGATGGMALIAVGGAQPSAAVFLAATALLGLAYGLCLREGLLDVDEYTPPEKRGRVIGLYYVATYIGFGISPLIAWITPRVGPSLPFAVFAVLAACSALIRSAQIRRGYLVRGVVGG
>NZ_LT906467.1|WP_051904689.1|318940_320611_-|AMP-binding-protein
MHKPALTPSRVAFTARSTVRFLRAANRAGLISGEGGPKAMLALAPNLARYHFTTAREVEQGAAAVPERTALIDDDGLLSYRQLRDQSRTLGRWLLQVQQDKGLDALRIGVMARNGRGIILPLAAKGYTGGTIFLLNIGSSPEQLAGIIAENNIDILFIDDEFADRIPEGIEHVTRVWAHTTLDHGDELTQAGIIARGTRGLPKLPLFPKHGDMVLMSSGTSGIPKGILRPEPKMPLVVAGYLEAMPFRSGHTIQMTASIFHTWGWSALNITLGVRGTVVTQRVFDPENVFRQLQQYRCDGLMSSPIFFKQMLDIPDNERFDTSHLKFIGSAGNALTPAIVERMHERFGPTLANIYGSTELALAAAADPALLASDASVAGRVPPGTVLKLYDDEGNEVPQGEVGRIFLNNETALRGYTNPETPLVTIDGLVEMGDLGYFDEHGYLHVLSRNDDMIIVGGENVHPQSVTEVLERMPGVDELHSGGVDDPDTFKRIAVWVVPERSEAGRRLTAQAVRDWVRANLADHSIPRDVNFIDKLPRNATGKVVPRLLPESRRED
>NZ_LT906467.1|WP_038587927.1|320811_321648_+|hydrolase
MTSTRLRTTLAAICAAVLAALGVVAAPSAGAQQRNMVIFGDSVIADPSGPQWAAGKLGLDPRGSSSVTTWCPTSPTSWGKQAAARLGLPAWDYSCTGTVSIQKGPQFSSQVTRAVRDRGLNRNTARVIISTGFNDTYHNDGRNRAAFRRDFVAAMVPQINRIRAAAPNARIQIVGYPKITQGDKVCLFHIAPNVSDTTPFAAVQEWEDSAQWAQVDLARATGIEFLDLKPSTWHNNMCAPDNKRMWAGLVDFYGGPGNLPIHVNQRGHAHVARVIAAS
>NZ_LT906467.1|WP_038587930.1|321631_322591_-|hypothetical-protein
MSRWTDRATLVLTLNHGFSRDAAERAAGDAETHAQADGLTPEAAFGTADEWAEQHAAEVRDELAHGGTDPFVGEERARPPRLTWIFFVAAAGFALGLTVVTWNDDVSLGMVVTPAILAFGLSVTLATYWNLYTRMAKWKAGALSAIPLVAISLLGAWAIMALDKFGLPFGNEWGLILALIFAAAAFFLPWKKQGPEEHTPRGDWDTTVAGELRARGEYHEREIRETIAEAHAFAAENGTSVEEEFGDPKRYAHSLPARPKRRLERTARINAGLFLIVLANAGLNWFSEGGPNMVAVYLFGFAAVCSAAAVVMSVIRMRR
>NZ_LT906467.1|WP_038587933.1|322587_322923_-|PadR-family-transcriptional-regulator
MTFPQPWIRAFMPTAVLRRLRDGPAHGYAIAQSLESLGFGRPKGGSLYPVLGKLEDAGLIQAHWTQSESGPGRKTYAITAEGEAELATHSAQLDQLRASLFNDPATRKDTK
>NZ_LT906467.1|WP_038587937.1|322980_324081_+|S-(hydroxymethyl)mycothiol-dehydrogenase
MAAQKVQGVIAREKGADVEVTTIVIPEPGPNDVVVKVQATGVCHTDLAYRDGDIEDAYPFLLGHETAGVVDSVGADVTHVAPGDFVVLNWRAVCGECRACRKGDTKNCFNTHNASKGMTLEDGTELTPALGIGSFAEKTLVHELQCTKVNPDEDPAAAGLLGCGIMAGLGAAVNTGEVQRGDSVAVFGLGGVGLAAVAGAALAGATTIIAVDLDQRKCDAATETFGATHAICSKGLSEQEVIDKVRELSDGFGTDVAIDAVGIQPTWRQAFYSRDLAGRMVMVGVPNQTDHIDVPAIDVYGRGGSIKPAWYGDCLPERDFPTYVDLHLQGRFPLGEFVSERIGINDVEDSFAKMKRGDVLRSVVEF
>NZ_LT906467.1|WP_038587940.1|324106_324733_+|MBL-fold-metallo-hydrolase
MTFRVDNVVTSGLFKLDGGEWEVDNNVWIVGDDSEVYIIDAAHDAKAIAAAVGNRRVKGIIATHGHSDHIDAAPELSRLVNAPVYLHPTDGFLWQRENPNAHYEQLLDGATFNIAGTDLKVLSTPGHSPGSVVIYAPEAGELFSGDTLFQGGPGATGRSFSSFDTIIHSLQTSVLDLPAETVVRTGHGDHTTIGDEAPHLEEWIRRGY
>NZ_LT906467.1|WP_038593606.1|325881_326583_-|DsbA-family-protein
MWAFTAVLALGTGVGGYVLGSQSATPPAATETQQAPAAGEAAGEKEAKVEVARREADDPMALGSVDAPVVISEFSDWACPYCMRFATETMPEIVKQYVETGKVRYEMNDFVINGQSALNGARAGRAAADQGKFFEFQEAYVAAASKVDGHPDFSLDELAGFAVEAGVPDLEQFRADMESDKYDQALTEANQLAQQAGFNATPSFSINGQVLEGALPYEKFAEVIDAELEKAGA
>NZ_LT906467.1|WP_038587944.1|326616_326982_-|DUF2304-domain-containing-protein
MIQFFLILATLVLAIYFFTHRKKANAKAWVKLGFVVLVFAAIWAILRPDDVTILANWLGVSRGTDLMLYALIFAFFFTTISTWTRFREQELRYARLARAVALQNAVCPEDTLGITDKTSKE
>NZ_LT906467.1|WP_038587947.1|326978_327704_-|glycosyltransferase-family-2-protein
MNVSRNAFPDAGQESFEDTWLIVPCYNEGQVIQEVLASARETFPNIVAVNDGSRDNSAQAIHAAGAHLVNHPVNLGQGAAIQTGVEYARAQPGAKYFVTFDADGQHQVKDVKRMIHRLRTEPIDIVVGTRFAGQEDTQVPWIKRVVLKTVVFLSPRTRRLGLTDAHNGLRAFNAKVAGEMNIRMNGMSHASEIVTMIDEHGWRVAEEPVDILYTEYSMSKGQSLINGVNILADGIVARRLP

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Crispr_ID: NZ_LT906467_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_4

1053633-1053814

Orphan

Consensus_repeat	Method
GACGGTTTTCCCAAACGGAGCTAGCTCCATTTGGACCTGCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906467_4

>merge|NZ_LT906467|4|1053633-1053814|CRISPRCasFinder
AGTGGTCTTCCTAAATGGAGCTAGCTCCATCTGGGGCTGCGCCGGTTGCAACAGCCCAGGTCGCGGGTTGACGGTTTTCCCAAACGGAGCTAGCTCCATTTAGACCTGCGCCGCCCGCAAATCCCCAGGTCGCGGGTCGACGGTTTTCCCAAACGGAGCTAGCTCCATTTGGACCTGCGCCG

>NZ_LT906467|4|3|1053633-1053814|CRISPRCasFinder
AGTGGTCTTCCTAAATGGAGCTAGCTCCATCTGGGGCTGCGCCG	GTTGCAACAGCCCAGGTCGCGGGTTGACGGTTTTCCCAAACGGAGCTAGCTCCATTTAGACCTGCGCCGCCCGCAAATCCCCAGGTCGCGGGTC
GACGGTTTTCCCAAACGGAGCTAGCTCCATTTGGACCTGCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038589786.1\|1057945_1061674_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_LT906467.1\|WP_144311811.1\|1050235_1050574_+\|zf-HC2-domain-containing-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038589771.1\|1050578_1050998_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234681
NZ_LT906467.1\|WP_038589774.1\|1051003_1052140_-\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_LT906467.1\|WP_051904798.1\|1061679_1062567_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038589803.1\|1068807_1069491_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223692
NZ_LT906467.1\|WP_038589794.1\|1065761_1066967_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
NZ_LT906467.1\|WP_038589789.1\|1062660_1064232_+\|carboxylesterase/lipase-family-protein	unknown	unknown	gnl\|CDD\|225181
NZ_LT906467.1\|WP_038589792.1\|1064311_1065133_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368199
NZ_LT906467.1\|WP_038589784.1\|1054085_1057829_-\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	unknown	unknown	gnl\|CDD\|237030
NZ_LT906467.1\|WP_038589781.1\|1052814_1053561_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224646
NZ_LT906467.1\|WP_038589749.1\|1043790_1044654_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236841
NZ_LT906467.1\|WP_095066759.1\|1047513_1048740_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234846
NZ_LT906467.1\|WP_038589797.1\|1066970_1067966_+\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|224868
NZ_LT906467.1\|WP_038589752.1\|1044718_1046164_-\|GH32-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|224536
NZ_LT906467.1\|WP_038589799.1\|1068041_1068818_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275311
NZ_LT906467.1\|WP_038589755.1\|1046224_1047379_-\|glycogen-synthase	unknown	unknown	gnl\|CDD\|273997
NZ_LT906467.1\|WP_038594059.1\|1065133_1065637_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038589778.1\|1052252_1052777_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038589761.1\|1048736_1049393_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|226607

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038589771.1\|1050578_1050998_+\|hypothetical-protein	gnl\|CDD\|234681	PRK00182, tatB, Sec-independent protein translocase subunit TatB.	1.16156e-50
NZ_LT906467.1\|WP_038589786.1\|1057945_1061674_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.14467e-150
NZ_LT906467.1\|WP_038589794.1\|1065761_1066967_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.35237e-63
NZ_LT906467.1\|WP_038589803.1\|1068807_1069491_+\|ABC-transporter-permease	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	6.97676e-07
NZ_LT906467.1\|WP_038589789.1\|1062660_1064232_+\|carboxylesterase/lipase-family-protein	gnl\|CDD\|225181	COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].	1.14228e-137
NZ_LT906467.1\|WP_038589792.1\|1064311_1065133_+\|hypothetical-protein	gnl\|CDD\|368199	pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes the fifth essential DNA polymerase in yeast EC:2.7.7.7. Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.	6.78941e-05
NZ_LT906467.1\|WP_038589784.1\|1054085_1057829_-\|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0
NZ_LT906467.1\|WP_038589781.1\|1052814_1053561_+\|hypothetical-protein	gnl\|CDD\|224646	COG1732, OpuBC, Periplasmic glycine betaine/choline-binding (lipo)protein of an ABC-type transport system (osmoprotectant binding protein) [Cell envelope biogenesis, outer membrane].	4.14157e-08
NZ_LT906467.1\|WP_038589749.1\|1043790_1044654_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|236841	PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional.	4.77606e-30
NZ_LT906467.1\|WP_095066759.1\|1047513_1048740_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234846	PRK00844, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_LT906467.1\|WP_038589797.1\|1066970_1067966_+\|nucleoside-hydrolase	gnl\|CDD\|224868	COG1957, URH1, Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism].	1.6541e-90
NZ_LT906467.1\|WP_038589752.1\|1044718_1046164_-\|GH32-C-terminal-domain-containing-protein	gnl\|CDD\|224536	COG1621, SacC, Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism].	7.65266e-50
NZ_LT906467.1\|WP_038589799.1\|1068041_1068818_+\|hypothetical-protein	gnl\|CDD\|275311	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family. Members of this model are the multiple membrane-spanning S (specificity) component of ECF (energy coupling factor) type uptake transporters. All seed members were found in the vicinity of the bifunctional enzyme folC, involved in making active cofactor from imported folate. However, some species have multiple members of this family, suggesting some diversity of function. [Transport and binding proteins, Unknown substrate].	0.00546418
NZ_LT906467.1\|WP_038589761.1\|1048736_1049393_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	1.88e-23
NZ_LT906467.1\|WP_038589755.1\|1046224_1047379_-\|glycogen-synthase	gnl\|CDD\|273997	TIGR02149, glgA_Coryne, glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_LT906467.1\|WP_038589774.1\|1051003_1052140_-\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	8.67721e-124

>NZ_LT906467.1|WP_038589781.1|1052814_1053561_+|hypothetical-protein
MRDALRRTTAILVAASGALSLTGCTGSEAFANFGVLQNDGQQTLSIGVNPEDSEQLVVGEIYNQVLAAYGRPVGIAANTNFAQRSAMDTLREDDIDLVVSCTGTLLYDFDRATAETYITDDQEAPQAPNAERADEVYASLVATFPHDIRTVDPSPAQGCADSEAAAAGLPQNFVPLFKEGKLSRREIKRLNFITRVMATKDIEEMAERVDNGELVRDATREWLMEYASINPDNPQTQSTDDAKAEPPV
>NZ_LT906467.1|WP_038589778.1|1052252_1052777_+|hypothetical-protein
MATPNPRQLQSREIPTGWPVGSFRTYAEAQGAVDALSDAEFPVEKLTIVGVDLMQVEKITGRLTWPRVLGGGALSGMWFGLFIGLLVGVFSPGDALWSILMMSLFIGAVFGVISAAVAYGFTGGKRDFSSATNIVAGHYDVLAEQDVAMRARDMIASMSRQSGQPQAQPEQGEH
>NZ_LT906467.1|WP_038589774.1|1051003_1052140_-|Mrp/NBP35-family-ATP-binding-protein
MTASSPITESAVYEALARVEDPEIGKPITELGMVESVAIDGADVAVGVYLTIAGCPMRDTIESNTRAVLEELDGVGKVDVTLHTMSDEQRRELAQKLRGQQTGPEIPFADPNSRTRVFAVASGKGGVGKSSMTVNLATALAAQGLSVGIVDADIYGHSVPGLMGSQDQGPTVVDEMIMPPIAHNVRHISVGQFVEGNAPIVWRGPMLTRAIQQFLADVYWGDLDVLFMDLPPGTGDVAITVAQLVPNAELLIVTTPQAAAAEVAERAGTISQQTNQPIAGVIENMSGMVMPDGSTMHIFGEGGGAHVAERLTALTDDEVPLLGSIPLDPKLRENGDEGTPVVLSQPDSPAARAIADVAAKLKVRRDSLAGKSLNPQVK
>NZ_LT906467.1|WP_038589771.1|1050578_1050998_+|hypothetical-protein
MFSSIGWGEIFFIILLGLIIIGPERLPGVLEDVRAAIYAARKAITNAKAELNGELGEFEEFRQPMETVSKYAAMGPKRAITQMLFDGDEHALDDIDPRTALNDSPQARTPKPPVKRNADGSRRQDPPASGGGFSWADIT
>NZ_LT906467.1|WP_144311811.1|1050235_1050574_+|zf-HC2-domain-containing-protein
MHKRFSSTEHLSPEAIAAYTDGELGETAMRRARLHLLQCVECWAEVLTQRRTAQRVRCCNDEELHAPQSLVERLTQLRHEDLAAHDAPAAPGGVLDKMEMMFRTLQRRGEKE
>NZ_LT906467.1|WP_038589761.1|1048736_1049393_-|class-I-SAM-dependent-methyltransferase
MIAYANKRAAADALAPEQAAEGMRLARTEAEENGVAVPSATVCALLTSFAATGSRDGAPHGAVAVTPAAGVVGLSMLRGLPDKATLTCIEPEATLQSGTKQALRAGGYSASRVRFLTARPLDVMGRLAKSAYQLIYADVSPVELEPIIRAAWPLLAPGGTLVLAGSLLDGTLADATRRDRETAAARAADDYVGEFAAEHDGVVTRLPLDGGLTLLTKR
>NZ_LT906467.1|WP_095066759.1|1047513_1048740_+|glucose-1-phosphate-adenylyltransferase
MRSVRSQPRVLAIVLAGGEGKRLFPLTADRAKPAVPFGGNYRLIDFVLSNLVNAGYMRIAVLTQYKSHSLDRHVATAWNVSGPTPQYIASVPAQQRRGKRWYNGSADAIVQSLNLIYDDKPDYVLVFGADHVYRMDPSQMVENHIASGKAATVAGIRVPRAEATAFGCIQSEPDGTITEFLEKPADPPGTPDDPEMTFASMGNYVFSTEALVQALLEDEQNEDSAHDMGGDIIPYFVNQGQANVYDFSENHVPGATERDRGYWRDVGTIDSFYEAHMDLISSHPVFNLYNSSWPIHSTEDGNLPPAKFVMGGIAQESIVASGSIVSGATVRNSVLSTDVRVEEGATVEGSVLLPGVRVGKGAVVRHCILDKNVYVSDGELIGVDMQRDRERYRVSDNGVVVVGKNEVI
>NZ_LT906467.1|WP_038589755.1|1046224_1047379_-|glycogen-synthase
MRVGMMTREYPPEVYGGAGVHVTELTRFMRKLVDVDVHCMGAPRDMEGVFVHGVDPELENANGAIKTLSTGLRMANAAAGLDVVHSHTWYAGLGGHLAGQLHEIPHVVTAHSLEPDRPWKREQLGGGYNVSSWSEKNAMEYADAVIAVSSGMKDAILRAYPRIEPDKVHVVLNGIDPGNWYPGETTIAEELGVDPNKPIAAFVGRITRQKGVPHLLKAAQLFDEDIQLILCAGAPDTPEIAAETEALVEKLRAERDGVFWVKDMLPPEKIREVYAAADVFVCPSIYEPLGIVNLEAMACETAVVASRVGGIPEVVVDGETGVLVDYAEDDPTTFERDLAEAVNKVAGDSALSQRMGAAGLVRAREKFSWATIAQETVDVYTTLL
>NZ_LT906467.1|WP_038589752.1|1044718_1046164_-|GH32-C-terminal-domain-containing-protein
MSVYRPELHVTAERGILEGPAGVIRAGDREHHEWHMFYQYKLDPDAASAWGHEVSEGDPFSWLECNDAIVPVGGELNVRAGSVVASEDSGVDSDGNQAIDLYFTSNTAAGNTIQRAHADDLAAISDELDEAEDGRLLPAAGVKRLGAVVQDDEEFTSFRSPCVVRDWRECEDLGATHVGWIMLAVTGPTESPQPVVLTSGDGQAWKVEGALIFEGESGLDTTGRLVAPRITRLRDEVDNEIYDVLFLTVEGTERDRAVYLVGKLEGNVFKVTSPAAPLDYGHDFTRPRNSTYTLEPANAQDRFERTYFFGFMAKAGRNIDPTEEPNWASEGWARALTLPRRATLQHGVLYQVPAPGLPEAVQSSRHALMWTALCDIPVGSTVVADVLDGNEEPVAVITHNGETLTVDRLDGDPVEAKVNEDDEDNITIIVDGSTLEVFAGGGSVVTSSRIWSESGYTGIRSRVTGDAEIFNEWRRGFPSAR
>NZ_LT906467.1|WP_038589749.1|1043790_1044654_+|methyltransferase-domain-containing-protein
MLKDIVDVLADPVDLSPLRGEDDFARLVSETGHSYDVAKQGYVTLASGKGLNHEGDSLEMVNSREAFLAQGHFAPFVESVTEHVQDVLEHSAPLAADPTVLEVGAGTGYYLAHTLDSIVDARGVGLDISVPAAKHLAKSHPRVGAIVADVWAGLPVRDESIHAITDVFAPRNPAEFARVLAPGGEVVVLLAHQGHLDELREPLGILGVEAGKLERMLEQAQGHLELAADPQLIEFPMRLERDAIAAQVGMSPSARHIEADVLQERVATLPSHLEVSARGQLVRLRKA
>NZ_LT906467.1|WP_038589784.1|1054085_1057829_-|multifunctional-oxoglutarate-decarboxylase/oxoglutarate-dehydrogenase-thiamine-pyrophosphate-binding-subunit/dihydrolipoyllysine-residue-succinyltransferase-subunit
MSSDNTFGQNDWLVDEMFQQYQEDPNSVDAEWRKFFKAKGGPSSANNAKRGAGKANTASAPKTDAKVAATTGAPSQDGRETQVDSAAKKAKATSNKQTSALPKPKKSPLDGINDVKVEPGYHLLKGAFKAIAKNMNESLEVPTATTVRDMPVKLMFENRSLINDHLKRTRGGKISFTHIIGYAIVQATKLHPAMNENYKEDEKKSFAVQPEHINLGLAIDLPSKDGSRSLVVAAIKETEKLAFDEFIDAYEDIVRRARDGKLTMDDFSGVTIQLTNPGGIGTRHSIPRLTKGQGTIVGVGAMDYPAEFAGASEDRLAELGVGKLVTLTSTYDHRVIQGAESGEFLRDISQLLIDDKFWDEIFTALNIPYSPMRWAQDLPNSGVNKDTRVMQLIQAYRSRGHLIADTNPLRWHQPGLPVPDSRDLLLESHGLTIWDLDRTFHVGGFGGKETMTLREVMSRLRAAYTLHVGAEFTHVMDRDEREWLRDRLEIGMPKPTSAEQKYILQKLNAAEAFENFLQTKYLGQKRFSLEGAETLIPLMDAVIDTAAGQGLDEVVIGMPHRGRLNVLFNIVGKPVATIFNEFEGNMRAAQQGGSGDVKYHLGFEGQHIQMFGDGEIKVSLAANPSHLEAVDPVLVGMARAKADLLKEAGIREDNPVVPIMLHGDASFAGLGVVQETLNLSRLPGYSVGGTVHIVVNNQIGFTTTPDSGRSSFYATDLAKGFDCPVFHVNGDDPEAAAWVAQLATEYRREFGKDVFIDLICYRLRGHNEADDPTVTQPVMYDRIHNHDSVRTRYTKDLIGRGDITAEDAEKAAQDFHDQLDSVFTDVKENKGQPSEQTGITDSQELTRGLDTSISEDTFKRLAEAFVDLPEDFTANKRLKSVMKKRGGSFADGDIDWGWGELLAFGSLAEEGKFVRLAGEDSQRGTFTQRHAVLYNPENGEAFNPLDHNAIEAGNGGRFEVYNSALTEFAGMGFEYGYTLGNKDAMVAWEAQFGDFANGAQTIIDEYVSSGETKWGELSSLTLLLPHGYEGQGPDHSSARIERYLQLVAEGSMTIAQPSTPANHFHLLRRQALGEMKRPLVVFSPKSMLRNKAAVSQPSDFIEVDRFQSVIDDPNFVERGNKKIADTDKVTTIMLCSGKIYWELEKKREKDGRDDVAIIRIEMLHPIPFNRLRDAFANYPNAKEIRWVQDEPANQGAWPFYNEHLRNLIPDMPEMVRVSRRSQSTTATGVAKVHQQEEKALLEEAFKK
>NZ_LT906467.1|WP_038589786.1|1057945_1061674_-|ABC-transporter-ATP-binding-protein
MPQQSSLHDAPAAHRGGALLRRSFAANRTSTALAFATATLAAILQVFLPALTGRAVDIATGNASGSTTATAWAMVGIALVTYALGALRRYASGHLAATSQHWLRLELLRTLHRLDGEGQDDIVTGQIVSRSISDLNQYAMVLGQTPMFFTRAMQLAGTLVVMCTMNLSLTAMALCLLPVILWEANRSRKALYAATWVNQQATADLAEHVEETISGVRVVKAFGGEQRGVDKLDALGRHLYAVKMRAAKLTARFQPLLTQLPNVALVITIIAAGLIVISGGITIGTFVAFTAYLTSLTSSMSMLTNQYVRLQMGMSSFSRLDQVLALAPHTTLAQGQAPAGPVGLAFERVTFATGGTTVLREVSFRVAPGETLAMVGPPGAGKTMAVQLAGGFYHPDAGRCLLIEAHSTPTDYADLSPAELRARVTCVFDDAFLFSSSVFDNIALGAPPSLRGDALTRAVHEAARLACATEFIEQLEDGYDTTVGERGLTLSGGQRQRIALARALISRPEVLVLDDATSAIDAATEAEILHNLRTELGDVAVLTVAHRQSTVDHADRVLVLEAGTVIAEGPRYEVVATESYRRFMAPGADAGASSKPTHSQLWPAVDAPERRVAANAGPHAVVANREVLANVEKLPPANETPGLDEATLARLRTPTGAGNEFKVSQLFRAVRGLIAATVVLLVIGVLADLAFPTLIRAAIDRGIAPANTQALFTIAAAAFGVVLVAWGANVWLTVLSARSGERLLYGLRLRSYAHLQQLGLSYFERHLSGRIITRLTTDIDTLSSFLQTGLAQAIVAVGSLVGVSAMLLATDGQLTLVALSAVPVIVAATLVFRHYSRRFFRAARTQISAVNGEFAELIGGIRVTQMYNAEPRAEDAFARASLHYRRLRMRSVALLAAYFPGMQAISQIMTAAVVGVGAQRVAEGELSVGVLVAFTMYLGQLYGPIQQLGQIFDSWQQATVSFERITQLLDERTTVPDHGTNPTAAEAARGVLALDGVDFGYGGVDKHGAPRLVIEDMGLRVQPGETIALVGPTGAGKSTVVKLLARFYDPTHGRITASGTDISDFPLPAWRRALAQVPQESYLFPGTVADNIAYGWDIGDAVRGREAEIEDAVRRLGALDVIAAIPGGFNAPVGERGRGLSSGQRQIIALARAEMLRPDVVLLDEATATLDPATEHAVLNAADRATAGRTSIIVAHRLLTAKRADRIIVIDGGRIIESGTHEALVNSAGKYAQMWAINRDRG
>NZ_LT906467.1|WP_051904798.1|1061679_1062567_-|hypothetical-protein
MGVFSRRKKAVEQAKPENLAELKEVSGPIGRAFINAVEKAVQLQTSTIRAYVDWLRRQDEDATPAQVQERMDAHFRNTVSANGAGVGAAAAVPGVGLITGSAAVAGESVLFLDLAAFYTVASAYLRGDDPEDPEQRRSMVLTVLADAEGLAVVDTFVGENATRLPSRSTLNRFAGPGMAEANGMLARSAMKTLRKRMRRAWIGKMLPLGLGAIAGTTANRKLADAIISRVSASLAPVPATFATPLPPREKDEKETAGLSLDPKSYAAWIRNLFDRKDADEKERANVDAAVEATKN
>NZ_LT906467.1|WP_038589789.1|1062660_1064232_+|carboxylesterase/lipase-family-protein
MTNAEEPIAVTTAGRVRGEVDPRTGVRTFRGVPYGATTGGNGRFRAPKPVAPWSGIRNATAYSAPAMQGFFGWTDNVIGTEDCLTLDIVRPNNDEELPVVVYFHGGTFVTGSSHEKVLQGHYLADTTDIVYISVNFRLGVFGYLDFRSIGGDCVANPAILDQILALRWVHDNAANFGGDPGRVTIMGESAGGAGVIHLMCAPAARGLFHRAIAQSPPVASVHSRVQAAMWVRKLLDGMGLPPTSTLEDLRAADAEALVRVGQSMLLNRKELVLFNTSFMPTVDGHTLPAHPIDVFQRGDQAAVPLIIGTNSDEASFAKALYQTNKSRLKAARRALGVYDPANSDAVLAAYDHVDARRKFAALIADAVFWAPSVMLATEHRRKAPTWMYRFDYASTTMRRLGLGAMHTSELTAVFGDAKATRAAKLDPFPKQADFDEVSAAMQYHWGSFFHNAHPGEKWPIYGFRSDTEPGRATAVFSASSYVEYDPKAAQRRAWESFDMREWGMHRQDLIDSLAKEADTAGPV
>NZ_LT906467.1|WP_038589792.1|1064311_1065133_+|hypothetical-protein
MSFFEDIATSLDREGIESRVHDETMFVPITSEVEIQFVEIDPLLPAANVYIAAADVDEDDEEFEAALVSVVFSVESAVATVAEHMATDQVITILRDLLEGTDERIEDLEFYPDRLNNQLVRAEVGESAELQVHVEVVDATATATVTFIALSDNYDDLMDDAIGELWESDGDAELTEEDRLRLFETIHSEAVSEAEVLDLGTFTDVDRLFDVLSLAADQAEEWEGQLLPLEDEDDELDIYDIFGQDDEEVDEEDEDDADAEDDTADDEDADSED
>NZ_LT906467.1|WP_038594059.1|1065133_1065637_-|hypothetical-protein
MNFKHSTPAPVSHTPAALAEHIHATEPEVVDRLRAIIHHPRSLARESASWRPPTKRLPWLPQLSHGTELTIAITRRRVGPRAQARIRGFGETRVPAFLIEVRISDPSGLPTDRRLAEAWVRALVPRDAVDAIHELPSPRTANYVWLTDGDFAPVASPPSMFEGLTAA
>NZ_LT906467.1|WP_038589794.1|1065761_1066967_+|MFS-transporter
MTTPAPRLQPTPAPKIPRTIWVLVGAAFMIALGYGFIAPILPQFTASFGVSMAAAGAVVSVFAAARLLGAPGAGWLVDKLGSRPIYITGLCVVAVATFFVAFATAYWQIFALRFIAGFGSTMFTLSAQALIVRVTHPSIRGRANAVYASAFLLGNIIGPVVGAALSFLGFRIPFAVYGLMVGAAALFVWAATRDPQGKAQLPPPLPPMQLTSAWRMPTYRALLSSAFTHGWVNFGTRVSVLPLFAAAFFTNGGAAAGFALTAFALGTAVTLQFSGRLADNLGRKPLIVAGLAATALFTGSMGLATSVVPLLVLSVLAGVGSGLIGPAQQASLADIIGNDRSGGKVLSTFQMAQDAGQIFAPIVVGLLAEAFGFGVAFVACAGIAVASIGIWLAFGKETKRS
>NZ_LT906467.1|WP_038589797.1|1066970_1067966_+|nucleoside-hydrolase
MRVLLDCDPGIDDTFALIYLAAAHHAGELELDCVTTTAGNVEAVQCAQNAAWILAQCNLPAIPLAAGEAQPLELVLTTTPETHGEHGLGYAHAPERHVASDWDLLWCDAIERGTDDLHLIVTGPLTNLATFARRHPRHFASLRHITVMGGAVNYPGNTTPTAEWNFWVDPHAAAEVFARTPVPITLCSLGVTEQFVLDPPRLDALVGALGDTPVAAVLPEITRFYFEFHEDVGEGYCAQLHDLLTVLIALGRIEVSALDATIDVEAVSELMRGTVAADLRGMWEREPNARVVTAADTDRAWPLIDAACTLHARFTAGDADLKAGYHLKAEE
>NZ_LT906467.1|WP_038589799.1|1068041_1068818_+|hypothetical-protein
MSQPFSTSEWTPARRALVAAGALIIAATWVYLVLVRPTDWESVGGATEATLTLAGYGIGTALLLIATVPMLPARTLGLIPLAIIINSVVGEIVGSIGLPLYLDSIGTVLVAALAGPVAGLTTGALNNVVWGLLNPAALPFAAGAALIGYLAGVFIHRFNALSSIVRVVGFGIVLGLIGGMVAAPVAAFVYGGTAGVGTGALVSLFREMGGSLIASVTTQAFISDPVDKVIVMVVAYLAVKALPQRTVRAFAPRTADAA
>NZ_LT906467.1|WP_038589803.1|1068807_1069491_+|ABC-transporter-permease
MPLNPLTALVVGGCGWILVFGLNSPAASAVIVLVACALGVWRTRNASVPAAVVALAVPVGLSMLLIHAPYGTHRIAPLLTSDGLAVGGALALRFCALMSCMIAAVAWIRIPDLVKAVQVLPGGNKLAYLAGATLQLVPQGHAQVKTVRDAQALKRTPITARNAITHLVLPVLTALLTHGSARGTALETAGYDLPGARTVLRPVPDSTLQRAVRWTLPVVCVGVALWI

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Crispr_ID: NZ_LT906467_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_5

1083786-1083879

Orphan

Consensus_repeat	Method
GGTCTAAATGGAGCTAGCTCCATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906467_5

>merge|NZ_LT906467|5|1083786-1083879|CRISPRCasFinder
GGTCTAAATGGAGCTAGCTCCATTTAGGAAGTCCGGTGACGTGCGACCTGGGGTTTTGTGTCCGGGGTTGGTCTACATGGAGCTAGCTCCATTT

>NZ_LT906467|5|4|1083786-1083879|CRISPRCasFinder
GGTCTAAATGGAGCTAGCTCCATTT	AGGAAGTCCGGTGACGTGCGACCTGGGGTTTTGTGTCCGGGGTT
GGTCTACATGGAGCTAGCTCCATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038589812.1\|1074801_1075647_-\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|365866
NZ_LT906467.1\|WP_038589825.1\|1079820_1081866_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236941
NZ_LT906467.1\|WP_038589809.1\|1073323_1074709_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_LT906467.1\|WP_038589839.1\|1090054_1090870_+\|SWIM-zinc-finger-family-protein	unknown	unknown	gnl\|CDD\|226729
NZ_LT906467.1\|WP_038594088.1\|1090928_1092080_+\|DNA-repair-exonuclease	unknown	unknown	gnl\|CDD\|277319
NZ_LT906467.1\|WP_051905027.1\|1072181_1073090_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_LT906467.1\|WP_038589845.1\|1094803_1095304_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_LT906467.1\|WP_038589816.1\|1076648_1077326_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT906467.1\|WP_141757805.1\|1095688_1096189_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038589848.1\|1095415_1095634_+\|PspC-domain-containing-protein	unknown	unknown	gnl\|CDD\|377200
NZ_LT906467.1\|WP_038589819.1\|1077322_1078366_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LT906467.1\|WP_038589831.1\|1084626_1085241_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_LT906467.1\|WP_144311812.1\|1081974_1082796_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_051904800.1\|1075643_1076576_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038589828.1\|1084103_1084586_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038589836.1\|1086965_1090055_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223627
NZ_LT906467.1\|WP_038589822.1\|1078362_1079700_-\|citrate-transporter	unknown	unknown	gnl\|CDD\|225407
NZ_LT906467.1\|WP_038589842.1\|1092083_1094744_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223496
NZ_LT906467.1\|WP_144311813.1\|1082835_1083735_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|365866
NZ_LT906467.1\|WP_038589834.1\|1085277_1086840_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038589812.1\|1074801_1075647_-\|trypsin-like-serine-protease	gnl\|CDD\|365866	pfam00089, Trypsin, Trypsin.	6.44869e-11
NZ_LT906467.1\|WP_038589825.1\|1079820_1081866_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0
NZ_LT906467.1\|WP_038589809.1\|1073323_1074709_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	2.85038e-174
NZ_LT906467.1\|WP_038589839.1\|1090054_1090870_+\|SWIM-zinc-finger-family-protein	gnl\|CDD\|226729	COG4279, COG4279, Uncharacterized conserved protein [Function unknown].	1.08438e-40
NZ_LT906467.1\|WP_038594088.1\|1090928_1092080_+\|DNA-repair-exonuclease	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.61168e-31
NZ_LT906467.1\|WP_051905027.1\|1072181_1073090_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	3.18519e-162
NZ_LT906467.1\|WP_038589819.1\|1077322_1078366_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.3319e-43
NZ_LT906467.1\|WP_038589845.1\|1094803_1095304_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	4.28202e-15
NZ_LT906467.1\|WP_038589816.1\|1076648_1077326_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.03675e-66
NZ_LT906467.1\|WP_038589834.1\|1085277_1086840_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_LT906467.1\|WP_038589836.1\|1086965_1090055_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	1.43684e-112
NZ_LT906467.1\|WP_038589831.1\|1084626_1085241_-\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	7.07973e-12
NZ_LT906467.1\|WP_038589822.1\|1078362_1079700_-\|citrate-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	1.44266e-140
NZ_LT906467.1\|WP_038589842.1\|1092083_1094744_+\|AAA-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	3.97331e-19
NZ_LT906467.1\|WP_144311813.1\|1082835_1083735_+\|trypsin-like-serine-protease	gnl\|CDD\|365866	pfam00089, Trypsin, Trypsin.	0.000108535
NZ_LT906467.1\|WP_038589848.1\|1095415_1095634_+\|PspC-domain-containing-protein	gnl\|CDD\|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	4.41345e-24

>NZ_LT906467.1|WP_144311813.1|1082835_1083735_+|trypsin-like-serine-protease
MNTSRACLAAAVVSSLTLAPVVAHAAPAPIPEQGLAISTSIGNCTLGYVDKEMRIGYTAAHCGREGDRVRIIDRTTNAHSREIGTFHPSTRYDELFSNDWGYIQWDRDVQLGGNPYSGDTIIDLNDVKRGEEVCYHGETSHRGTKDITCGTFYRATGQSFAMRGAYWRPGDSGGPVWIPGRGLVGVASIGPATPGKVGTATVGRVRVEGKPMGWGAAPRDGRLIGNDEGSREFLAAAGLDSAGVYDELIDRSSKSSKSSSSEKESSSSEMTPGEILSIVIPILVVLVPLLAQLAQQFMR
>NZ_LT906467.1|WP_144311812.1|1081974_1082796_+|hypothetical-protein
MQQLPRTLAMGIVATLFAVVAVVAPSASAAPRVSQGSVIVTDGGMCTVGFSDPARHRSLVAAHCGREGSRVSVLDPATGAVSRQVGTFYRSKAYDQRLGNDWAAIQWDRGVAVGGNPHSGNRWVHPNNIALGETVCYHGNASHGGRGSTCGKFAGSVGNTFFVDAPLTRPGDSGGPMWVPGRGFVGVISSQWAARQLPVVGGANFVVGVVPHDGPAVTEVQLMGLYMENLVAPVSAGGSAVGPVGESVRRVVSTVFGFLSRFGLPYPSAVHYS
>NZ_LT906467.1|WP_038589825.1|1079820_1081866_+|DEAD/DEAH-box-helicase
MSTSENATGSENGPDMNLSENQHTPQDVAAEESAAEDTRDAGSAEDAGASQETVEATENAESTENVESAEETAEPEKPANGFETLDLPEKVVEAVKKVGFEQPSAIQAETIPILMQDRDVVGLAQTGTGKTAAFALPILSRIDTSKRHPQALILAPTRELALQVSDSFQSFADHLGGVHILPIYGGQAYGIQLSGLRRGAQVIVGTPGRVIDHLQKGSLDISNLRFLVLDEADEMLNMGFQEDVERILEDTPDDKQVALFSATMPRAIRKISRDYLNDPVEVTVKSETRTNTNITQRYLFTAHRNKLDAITRILEVTEFEAMIVFVRTKNETEEIAEKLRARGFSAAAINGDIAQQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVLNYDIPNDTESYVHRIGRTGRAGRTGEAILFVTPRERRMLRSIERVTNATIEEMDLPTVDEVNESRKVKFMDSITESLEASELQLFKSMVREYSAANNVPMDDIAAALATQALAGDEFLMKEPPKDKRDRRDRRDRWDRDDRGRGRGRDGRDGREDRGRGKRRHNDSENFDTYRLDVGKRQHVRPGAIVGALANEGGLSSKDFGRITIGGDFTLVELPKKLDKQVLDRLSDTRISGQLINIQRDHGAPPRDRGGRGRRGDFDDHRGRRGRRDDRRGRRDDRRGRGNRNWD
>NZ_LT906467.1|WP_038589822.1|1078362_1079700_-|citrate-transporter
MGLSIILVTVGVLLKGKMHPIIAMTLFPIAGALITGFGIGEIADFYGEGLERVMGVVVMFIFAIIYFGILSDVGLFDPVITALIRATRGNVMLVTLGTAAIAIVAHLDGSGSTTFLLTIPALLPLYEAMRMSRYVLLTLVALSASVMNMIPWGGPVGRAASVIDATPNEIWRHLLPAQGFAIVMVFLVAAGFGFAERRRLAKLDAHSLDDAHTPVDVHTIADDFRTSQAADRAKYNLTPRTGTWVTVVNTAITLALIGVLVSGVSSPAPAFLVGTALLLAVNFPTLDDQNDVLRRHAPTALSMAGVILAAAMFLGVLDGTGMLEQIALSLIAILPASVGAYLHVIVGLLGVPLDLATSTDAYYFSVLPIVQETSAAFGTSSMGAATAMIVGNVIGTFVSPFSPALWLGLGLAGANMGKYIRVAFPICWGFSIVLVLGAFATGMLA
>NZ_LT906467.1|WP_038589819.1|1077322_1078366_+|HAMP-domain-containing-histidine-kinase
MTLRLRLTLVLVATVFGAGAVLTALVCAYLALTPVPLHVSLPGPEGVLIDAAMPIPTSIITIVLATMLVALALLTALAGLVGWFVAGYALSPVRRIAAVAREVSDGDVAKRMHYEGPADDVGDLAHAFDTMLDSLAASLDAQRRFAANASHELKTPIATIQTVADVALMQADSSSDAQLADALRRIREVNARAGQTVERLLAFARAEAAQPGSVTGQPVDLVTLCEEVCAQYGVPLRAPGSPVVVNGDEVLLRQAVGNLVGNAVEHGAPGTAEVVVGEGRVGVENQGPVLDSSEVERLKEPFVRGAGRVAGSHGLGLSLADAIARAHGGTLHLAPREGGGLRAELAV
>NZ_LT906467.1|WP_038589816.1|1076648_1077326_+|response-regulator-transcription-factor
MTGMSNVVVVEDEVYLADAIAAAITAHGCTTRVAYDGAQALTLLEDADVVVLDRDLPLVHGDEVCARIRAEHPHIRVLMLTAASTLDDRLAGFASGADDYLTKPFEVPELLARVDALLRRHTPPKSEVLRCADVRMDTARRIVTRAGTPIPLSPKEFAVLEVLLAADGAVLSAETLLEEAWDAFADPFTNSPRVTISHLRRKLGDPWIIHTQPGAGYYAAEEARP
>NZ_LT906467.1|WP_051904800.1|1075643_1076576_-|hypothetical-protein
MTNASRLPPRIIGVDAARAVALGAMMWAHLTDSTSPWLYGFPSALFAFLAGVSMQLSMRATGGAALARERHQAMVRGAALLALHVVLTPLSGSITVVLGTFGACYLALACAPRWGTRTLVWVCGALMVVSALQLPLSVTAPPYPLFEWAALMVAGLIAARFLPRLPLVAPVGAACAVFGVWMRPLLDAHQYPFLNPNGHTGGLIALISEIGCSLAVLGLCLLLFSRWCPYPIQAMGRTPLSVYCLHVVTAALLPAGPLSAALSIVAAAALASVWLLFFPRGPLEQLLRDFTHAAARQDLPQRHSAKELQS
>NZ_LT906467.1|WP_038589812.1|1074801_1075647_-|trypsin-like-serine-protease
MKTFRITTAAIAAGLLTATPAGALESTHFAEGSPEGSSVVSVRTANDDPADGVCTGTAISPHWVVTARHCMDHLPTPGGSVRVGEGDDQRTVAVDSWKTAPVGDIALLHTAEDLGLEHYATVDTEVPEPDTPGTVYGWSSEGSGGSTRLPMTEATIDGPNPMALFDGKQALTVTLAEGAGIHGGDSGGPVFRNGKLTGVLSAGLFVNPDDPEEIAMDTNAAASAAPLGDAAQWINDTIADDTADAADGDSGESSSTPYILAIVVLLAVAGGAAVVARRRKA
>NZ_LT906467.1|WP_038589809.1|1073323_1074709_-|amino-acid-permease
MSTTAAQKSRGLSHRHIHFIALGSAIGTGLFYGSAGAIQAAGPSVLLVYLLGGAVVYFMLRALGEMSVRHPVRGSFAVYAREHLGGLGGYITGWMFAFEMMIVCLADLTAIGIYMKFWFPDTPAWVWITTTLLIIGGANLASVRWFGELEFAFTLIKVVAVVAMIVGGAAILAFGLGSQPEATGIANLWNDGGFFPNGPEGMIAAFILVLFAFGGTEIIGVAGTEADDPDRSIPKAVNTVPVRILLFYVLAILVILMLNPWRSITGEESPFVQIFSTLGVNWAAGLLNLVVITAALSAINADLFGTGRVLTGLAREGLAPRAMARTVRDIPVMTTVTLLIVLVVGVVLNANFPNVFETIAALATFATVFVWLMILISHLASRRHMSTTEAKALTFPVPFWPYGQWFAVAFILFTFGIMVWQPQYHLALGVGVAFLVIMTVLYFATGRPQAVASAHTEDDYK
>NZ_LT906467.1|WP_051905027.1|1072181_1073090_-|L-lactate-dehydrogenase
MAYAYALINQGLCDQLAIIDINEEKTWGEVEDLNHSVPYSGHNTKVTVGTYEDCRDAALIVNCAGVAQREGETRLDLVGRNVKIFDSINKEVMANGFNGIYLVATNPVDVLTYATQKQTGLPASQVLGSGTVLDTARWRYNLSQKYNVSATSVHSYIIGEHGDTELPVISTGSIAGIALRNRLAKEAETNPDVYKEIDEMFVATRDAAYKIIQAKGSTDFGIGGCLARITRAIFMNEDVVLPVSAKLDGQYGQSDIYIGTPAVVNRNGIREAIELYLNDEELEKFTHSAETLRNVMKEAELV
>NZ_LT906467.1|WP_038589828.1|1084103_1084586_-|hypothetical-protein
MVTFFTALHVVAAIILLGPVVVSTSMFPKHAIEARTGSEEATGRASVLHKVTNTYGMLSVLVPLLGGLVMATDWGAYKTNYFLHTAIILSVIAWGLLFFMVIPQQRAIMGSLGALSPAEGDASDAAANFEKAKAKAAAGAGIFNLLWLLTFILMFLPSPA
>NZ_LT906467.1|WP_038589831.1|1084626_1085241_-|HNH-endonuclease
MRTFLSLLTVATLLIVPFPTPRSQFGVSAGLPRATVLGYSRDAFGTGWAPLADGCTTRQAALNATFGAAPVAGSPRDSCPAPRDTPVVGPYTGQPITPYDVELDHVLPLSAAWDLGAHAWEQSRREAFANDPLNLVVVAAAANQQKSDQLPSEWMPPKRAQRCAYAHRLADVARAYELSLPRADLREMRRACGGIAGLLGARTM
>NZ_LT906467.1|WP_038589834.1|1085277_1086840_-|sodium/proline-symporter-PutP
MSDSFWLVVAIVLYFGVMVAIGFYSWLQTQKYDDYVLGDRGLHPFVAGLSAGASDMSGWLLMGLPGALFVSGMSELWIAIGLLIGSWCNWKWVAPRLRAYTEVSNDSITLPSFFENRTRDSSRVLRVVASLIIIFFFTFYVSSGMVSGGRYYESTFGGEYLVGMLIVGSITVLYTFIGGFLAVSYTDVVQGVLMFLALITVPIMALIAVDNPGELFSYATDHSYGPWPEGNPTFFNMVAGVSAATIIGNIAWGLGYFGQPHIVTRFMALRSPSEATAARRSGIIWVTFCFLGAIFTALVGTLFFSQTTHSVTDQEGFETIFLDLARILFHPLIAGLVLTAVLAAIMSTMSSQLLVTSSALVEDLFRIFRKEASQTTLLVASRTMVVLVALVAMLMAFNPSDTILGLVGFAWAGFGAAFGPVIVAALYWRRLTAPGAIAGMIVGAVTVFVWGSVDALSGMIYEIVPGVLFATIAMVLVSLATKPKPGVDEEFDTAVAVTNYAFAHPEANFHESLEAVERKH
>NZ_LT906467.1|WP_038589836.1|1086965_1090055_+|DEAD/DEAH-box-helicase
MPQYLLHGLWLPESGLNIWVEQVSGHRVLTFADVPDGTFPRLVTELLAGNHFRGRAPITLQTPKGKQVTLRAPTATFSPTRTVAALEKLSLLDDDQRATLAPDLKWLIHAYRGLEQFVRAGRVTIHVPKRDAHFYAQFKLGTGVKERGWLAQMVAAAPGVIVLNDPNISEDLAQTLTHWVATQRLHAMEVPSRVRPYPWHDFVASLVFGTPLRRGGASLVSKINDWSGSITAVNLQLVFLVEAPDDEPEDAESAESAEATGELTWPVRVQVRAGTDAPRPVRQSDYDAQTAQTLRDTLQRAIDVSELVDYRRHGGARDMRSGDWDCYLSTEEIVRFVETEAAKLQREGFTVMLPKAWSRAVTSAKLKVSKPENPYDSSTVTRIGFDQLVEYDWRISVGDTELTDAEMKELINSKTGLIKLRGEWVLANGKDLSRTRQYMKKLQRSALEEAKAAVERAEKLAELAEAAGSDDAAELRAAATQAQQRYEELLKDEGEGVVSAAELRQLALESLTEEPIEFTGSTWFTSLLGGQDRPAPERVEIPDTVHAHLREYQRRGVDWLDFMSRNNLGAVLADDMGLGKTLQLLALLAVEHEAGRVQGPTLVVAPTSVVGNWAREADRFVPELDVVVHHGSGRAKGMELVDKLSQADLVITSYGVVGRDARELALVQWDHVVCDEAQAIKNSGTQASKSVRAIPARHRIALTGTPIENKLAELRSLLDWVNPGMLGSQAFFRNHFAKAIESQRDEELAAEMGQRLQRLTAPFILRRVKTDAAIIDDLPEKREHVIAVDMTDEQAALYTALVGSTKQELERREGMARRGLVLATITRIKQVCNHPAHFLGDGSPVTVQGKQRSGKVAKLMELLFKAVEQGERVLIFTQYKAFGDLLQPYLSEQLGEEIPFLHGGVGKSARDAMVERFQREDGPRAMLLSLKAGGTGLNLTAASVVVHMDRWWNPAVENQATDRAFRIGQRKDVTVYKMITKGTMEESIQDILDGKMQLAGTVVGEGEGWITELDTEDLSRLISYRGRQE
>NZ_LT906467.1|WP_038589839.1|1090054_1090870_+|SWIM-zinc-finger-family-protein
MTKKKRPQEGNVIYANFGQRKRVSSAAETGERVMSARAMNQPAMRMINAAVRQTDLGRATRGREYAAGGHVHDLHFDRARITASVVGSQNYPFEASILLPFRSAAEVREALGTLAREAGAVDKALKGDINDDVLDVLLFSAPEEVYTSCTCPDSARVCKHIVAVADRAAQQLDATPSLVFSLRDITVAGLEQIVREEAASIAHESTIPGSEFFWTGHELPELPNPKIAPMIEDSDMDLLQTAMQSISFTNIDQMRAVADIEELYEDLTRED
>NZ_LT906467.1|WP_038594088.1|1090928_1092080_+|DNA-repair-exonuclease
MTKTTFIHSSDLQIGMTRKFLSPEAQSRFDEARERSIDALGTLAVERGAAFIVIAGDVFEHNALEKRTLGRALEALRRLPVPVYLLPGNHDPLVADSIFRHTEDIPNVTVLVDESPVEAAAGVEVVGAPLLTKHPSEDLCARVVRGLEPTDKVRILVGHGQVQGFGKEDAEALIQLDVLEDAVERGVVDYVALGDSHSTASLGASGKVWFSGAPETTDYAEHTGPEIGGEADSGNALVVEIDKQDGRAQVQVDKVRTGTWTFDALFWEVADADDVDAVIAQLREYPDKDRTVIKYTLTGTLGLEATRTLERELGELEPVFAALYPRERLMDLHLEPSQEELDNLPLTGFANQAMHELIGQATEGDATARDAVNLLFRLSQEAN
>NZ_LT906467.1|WP_038589842.1|1092083_1094744_+|AAA-family-ATPase
MRIHSLTITNFRAIEHLELKELPETGVIIVHGPNEAGKSTILEGIDLVLNERHSAKGKKIAKYAPANKDVGPEVELSAAVGEVEFTVRKRWLKSPQAELTVRAPRRENFTGRNADDELARILDEHLDRTLMETLFLRQGELDPAVQAAGVPTIATALDAGEGAGESGAEDTQLMQEVDAEYAKYWTNAANPKPKAAFKKLATDVEQAREEYEARVAEVESLSRYVDEVARREEEITQVDTELPGAEEALAKRVQEAKAAEELAEKLGQANAKREQAAHERKRATQDLEARTALAERVAVLRKEEADLRTSLEPAREAAEDEETQVTQLREGLTKAKEAVAAARAEVKKAEQRRDFARATQRHATVEAHLKRVKEAEKAYREALDATPAKEITDADVRAAETAENEVALQRKLRDAASSKVELSGKDGTVTVDGETVEVQATESAEINVFDGTRIDIEGFQLTYRAAQGAQDPREAVREAEAALAELLEAAGCESVEELRDLRDAHKAQAAEVEAARRRREDVLAGADREELASEHERLAASIAELAEALGVDDKAESIDEADAENAVRDAHTALGAAEREAEQAEAALKPYAELKAAKALAVLEARVEAKATEAAGADKEFAAAEDAQPREALEAAHKEAEAALETATQEADTLAAAADEADVELAHTLLEAEQARVANMQQRKNEATIRITELRGRIEQATGAAEQADKAEARLEKAETELDKATRRAEAIKLLRTTLYACREEARAKYTAPFNAAIRKRARVIYGKDVDFNFGEGLQITDRSLGDVTVPLQSLSGGAKEQLALLTRFAIADLVTETGETAPVPVVVDDALGATDPERLALMNTLFTQAGKNAQVLVLTCFPQRFDRVAAAKTVHIDELKHADEQ
>NZ_LT906467.1|WP_038589845.1|1094803_1095304_+|winged-helix-turn-helix-transcriptional-regulator
MTLDPRWLNDDEQELWRLMLAASRKISRVIDDTLQAESDLSSSEFSVLVSLSEAENHSLRLRDLCAVLDWDRSRTSHQVTRMEKRGLVTKAKSPGDARGVLVCLTDEGMRRLEAAAPEHVESVRRLVFDHMDPETAAPLRAFFTSVLGVTNVPGHADYRGAQPMSP
>NZ_LT906467.1|WP_038589848.1|1095415_1095634_+|PspC-domain-containing-protein
MTYQNYNPNNAPKRLTRSTTDKVIGGVCGGFAQYFNIDPVIVRVIAVFLLLFGIFPMFLAYLAAWAIMPAEF
>NZ_LT906467.1|WP_141757805.1|1095688_1096189_-|hypothetical-protein
MTQTTVQSNSPDATDQPAPSEQQTEPQEETQEEAPASPAPNAGYTINPGQIGGDCGTTADGMTLSAADATSCEFAGAMYEAGINAEYRWRQLSPDRNGAYGAELTVASPITKETYEISCAIGSDQRYLGCGVYDDNSVHVSVGPVTDYGGWTSRLNIVEYQPQPPQ

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Crispr_ID: NZ_LT906467_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_6

1211782-1211881

Orphan

Consensus_repeat	Method
GGCGTGGCCAAATGGAGCTAGCTCCGTTTAG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_LT906467_6

>merge|NZ_LT906467|6|1211782-1211881|CRISPRCasFinder
GGCGTGGCCAAATGGAGCTAGCTCCGTTTAGGAGATCGGTCAAGTGGCGACCTGGGGTTTTGCTGGCGGGGCGTGGCCAAATGGAGCTAGCTCCATTTAG

>NZ_LT906467|6|5|1211782-1211881|CRISPRCasFinder
GGCGTGGCCAAATGGAGCTAGCTCCGTTTAG	GAGATCGGTCAAGTGGCGACCTGGGGTTTTGCTGGCGG
GGCGTGGCCAAATGGAGCTAGCTCCATTTAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038590156.1\|1212107_1213385_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379306
NZ_LT906467.1\|WP_158407425.1\|1218524_1220351_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277318
NZ_LT906467.1\|WP_038590163.1\|1216897_1217644_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_051904815.1\|1198225_1199086_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038590172.1\|1222191_1222905_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_LT906467.1\|WP_038590175.1\|1222954_1224376_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|235490
NZ_LT906467.1\|WP_038590138.1\|1203559_1205434_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_LT906467.1\|WP_144311815.1\|1208083_1209154_+\|polyhydroxybutyrate-depolymerase	unknown	unknown	gnl\|CDD\|226040
NZ_LT906467.1\|WP_038590159.1\|1213500_1214688_+\|chromate-efflux-transporter	unknown	unknown	gnl\|CDD\|273350
NZ_LT906467.1\|WP_157727800.1\|1215339_1215516_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_095066808.1\|1209226_1210702_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_LT906467.1\|WP_038590132.1\|1200874_1201891_+\|3-isopropylmalate-dehydrogenase	unknown	unknown	gnl\|CDD\|179579
NZ_LT906467.1\|WP_038590150.1\|1206848_1207997_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091
NZ_LT906467.1\|WP_038590141.1\|1205435_1206005_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236392
NZ_LT906467.1\|WP_038590166.1\|1217676_1218447_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038590129.1\|1199172_1200756_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|237436
NZ_LT906467.1\|WP_038590145.1\|1206043_1206835_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_LT906467.1\|WP_038590169.1\|1220496_1222185_+\|alkaline-phosphatase-D-family-protein	unknown	unknown	gnl\|CDD\|226070
NZ_LT906467.1\|WP_038590135.1\|1202021_1203518_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038587921.1\|1215607_1216762_-\|IS1249-family-transposase	unknown	unknown	gnl\|CDD\|226202

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038590156.1\|1212107_1213385_+\|ATP-binding-protein	gnl\|CDD\|379306	pfam13635, DUF4143, Domain of unknown function (DUF4143). This domain is almost always found C-terminal to an ATPase core family.	9.83586e-25
NZ_LT906467.1\|WP_158407425.1\|1218524_1220351_-\|metallophosphoesterase	gnl\|CDD\|277318	cd00839, MPP_PAPs, purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.89885e-14
NZ_LT906467.1\|WP_038590172.1\|1222191_1222905_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.2515e-38
NZ_LT906467.1\|WP_038590138.1\|1203559_1205434_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_LT906467.1\|WP_144311815.1\|1208083_1209154_+\|polyhydroxybutyrate-depolymerase	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	2.60322e-27
NZ_LT906467.1\|WP_038590159.1\|1213500_1214688_+\|chromate-efflux-transporter	gnl\|CDD\|273350	TIGR00937, Chromate_transport_protein, chromate transporter, chromate ion transporter (CHR) family. Members of this family probably act as chromate transporters, and are found in Pseudomonas aeruginosa, Alcaligenes eutrophus, Vibrio cholerae, Bacillus subtilis, Ochrobactrum tritici, cyanobacteria and archaea. The protein reduces chromate accumulation and is essential for chromate resistance. [Transport and binding proteins, Anions].	2.1051e-78
NZ_LT906467.1\|WP_095066808.1\|1209226_1210702_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_LT906467.1\|WP_038590132.1\|1200874_1201891_+\|3-isopropylmalate-dehydrogenase	gnl\|CDD\|179579	PRK03437, PRK03437, 3-isopropylmalate dehydrogenase; Provisional.	0
NZ_LT906467.1\|WP_038590150.1\|1206848_1207997_-\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	4.3188e-117
NZ_LT906467.1\|WP_038590141.1\|1205435_1206005_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|236392	PRK09146, PRK09146, DNA polymerase III subunit epsilon; Validated.	2.59113e-33
NZ_LT906467.1\|WP_038590175.1\|1222954_1224376_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|235490	PRK05478, PRK05478, 3-isopropylmalate dehydratase large subunit.	0
NZ_LT906467.1\|WP_038590129.1\|1199172_1200756_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NZ_LT906467.1\|WP_038590145.1\|1206043_1206835_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	2.62946e-86
NZ_LT906467.1\|WP_038590169.1\|1220496_1222185_+\|alkaline-phosphatase-D-family-protein	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	1.48875e-145
NZ_LT906467.1\|WP_038587921.1\|1215607_1216762_-\|IS1249-family-transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000118025

>NZ_LT906467.1|WP_095066808.1|1209226_1210702_+|glutamate--tRNA-ligase
MRVRFCPSPTGTPHVGMVRTALFNWAQARHSGGTFVFRIEDTDAARDSEESYQAIIESLEWLGLTWDEGINVGGPHEPYRQSQRMDIYKEVLDKLIEAGEVYPAYSTNEEVQERHKAAGRDPQLGYDNFDRDLTQEQIDAFEAEGRKPVWRLRMPDQDWTWNDLVRGEVTFKSETQPDFVVARSNGAPLYTLVNPVDDALMGITHVLRGEDLLSSTPRQIALYAALQRIGVTDFTPEFAHLPFVMGQGNKKLSKRDPESNLFNHRDAGIIPEGMINYLALLGWSLSADQDIFSVDEFVKAFDVSDVLGNPARFDQKKLEAINADHIRLLEPEDFRDRLRAYLTEYTDFPADYPAEKFALAAELVQTRIKMLGDAYGLLKFLVTPDSELELNEKAARKNLKEDAVEALDEGIAALEAIDESEWATDAIDAALNEALIQKLELKPRKAFGALRVGVSGEQVSPPLFESMELLGKESTLTRLRAARAVTPYAAE
>NZ_LT906467.1|WP_144311815.1|1208083_1209154_+|polyhydroxybutyrate-depolymerase
MTGVKIVKTLAGGLVALLLATQATPAAAQDLSSTLDGQVNAAMESANNAVADATRNANAEWNKFVRMANESLPPGSSLPHNPVPEPAPVPKVPGGSGWAPQAKAPIAPGRNGEIVGAGRSYLVWVPANYNPARPTPVMVGYSAYQDSTENFRNYSRLRESAVGQNAIIVYPRAIGASWEGSPTAVTRPGQDIRFVRAMIDDVQRYYNIDRRRIYATGMSTGGGMAAVSACHMADLFAGVAGVSGAYYAPVNRGCQPIPVAFMAVHGTGDTLTPYHGTVRRGERVLPVPAMFASYERRNRCAGGVDRAPVGPNATRVSGRGCAKGVQVIQVHGSNHYWWYSPSAADELWWFLSRYAK
>NZ_LT906467.1|WP_038590150.1|1206848_1207997_-|isochorismate-synthase
MPQTPAHNSPTPDHRRPASAPDFLLSRAHGSVRTQGSVRQFSDAFAAIDAIEAGEVDMVVGALPFDQNCPAALTVPETIVRESGTLEPHPYYRVGPGSRLSASVTSYDPAPQEHLRRIEAALGTIEASKLDKVVLARAVDIAFDPPVDPRLVAARLIDLSFTRDGFIADLTPAGRPGNFFVGSSPEVLVKRRGMEVASHPLAGSAARIPHDREADEAAAKALYNSAKDLDEHAYVVEHIRGILAPLCTRLEIPERPQIEKTSEMWHLATPIRGELKDPAPTALDLALRLYPTPAVCGTPPEAAEALITTAETDRGFYAGAVGYTENNGDGEYMVAIRCAEVDASGTSARTWAGGGLVLGSDPQAELDETSAKLRTIMRALGL
>NZ_LT906467.1|WP_038590145.1|1206043_1206835_+|fumarylacetoacetate-hydrolase-family-protein
MRFGRIATPEGMTFAVIDEAGEVAKAIAGTPYTDPEYTGKEYKLEDVRLLAPTLPSKIVAVGRNYADHVAEVFKESAEHLPPTIFIKPPTAVVGPGAPIRIPDFATGVEFEGELAVVIGVPCKNVKAKDWKSVVRGVTIINDVSSRDLQFSDGQWARAKGIDTFAPLGPWIETDLDKFDFSDLPIKAHLTHDGKTETKQDSNSKQMIMNIGEMIEWVTQSFTLLPGDVMATGSPAGTAEMVPGDFIEVEIPGIGSLGNPVARA
>NZ_LT906467.1|WP_038590141.1|1205435_1206005_+|DNA-polymerase-III-subunit-epsilon
MFFGTRAKRRQLIDGALLAVDVETTGLKPGRDALVAVGWVPVNGEVIDLAGAEYHVLAGAQVGDSATIHGITDDEVAARGEAPEAVWEAFSRAIEGRQLLAHFAQMETGFLGQLSAQVRGKRWALHDSEVIDTMTMERRHMERMGTYPRGEDLRLPRVRQRYGLPRYTNHGALTDAIACAELYLALVSE
>NZ_LT906467.1|WP_038590138.1|1203559_1205434_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MSVELEEVSGFLAQHEPFSHLPEDELAALPAQMGITYVRRGTTVVGLGEPNDTLHIIRSGAIDIVAEDGLLLDRRDAGKNFGYSTLVGDRESQYTMTAVEDCVLLLLPRETFMQLLDAHPDLERFFQTASRRVAAAAKEVRDSGSAQVLRTRLSELIRDRELRTIEPTTPIAEAAATMDRHRVTCLIVEAGEGEPGILTDRDLRSRVVARRVDPDRPVAEIMTSPVRSIAASALVFEAMLLMGEAGIHHLPVEGEHGIEGVVTSSDIMRLLQADPIYLAADVERASYEELEGAYERAAQVAMRFYERGASATESQRILTSIADGIARRLCDLAIEKLGPPPVPFAFVAVGSQARREMGPASDQDNALVLGNAFDPAAHGAYFAELGRFVCEGLGHAGQALCPGDMMAANDAWRMTQTQWERTFHGWVTAPDPDALLHAQVFFDFRTIFASDAAAEAAAREVHDAALASARGSRRLHTHLAALATFREPPIGFFRGLVVERSGEYASTLDIKRGGTAAVVQMARLYSIVSGVDEVDTVARILASRSEPGAIISTKGAEDLLGAYEYLADLVMKHQARQLRAGERPDYHIDPKQLSERDRAALRDSFRVIKSLQNALANKYPVQAV
>NZ_LT906467.1|WP_038590135.1|1202021_1203518_+|hypothetical-protein
MRLHTSRARVVSACALIAALVMTVLGLTGAFQQVSGSPEAAGEGERLATDGSEVIADADGTGVEVSKLLFDAAGTVVVAGPKREDQLRAAAIAVEKGVPLLTRWPNTDAAVDEEITRLGANTVIEVPSDDAEVNEAEPVDSHAPENDAAAIAALDTPNAQDRQLPPMLASPQTSRAAAATARAAGAEIEVVAAPDPRATSTSMRTVAEQDTLALGRQWGTTEDFHSRIELAGNGELPGGGGLVFPGRRMIALYGHAFAPELGVMGEQPPAEAAALAKEYAEKYQPLADEPVIPAFEIIVTVASNSPGEDGDYSNEADPAAVVPYIDAITEAGGYAVIDLQPGQGDFLHQVRLYEELLKRPNVGLALDAEWKLNPGEEPLSRVGSATAEEINVVADWLAEFTREHNLPQKAFVLHQFQLGMFPDRENIRTDHDELAYILHADGHGTPGQKFETWDLLRKDLDPGFYMAWKNFIDEDEPTFSPEQTFNDVSPRPWFVSYQ
>NZ_LT906467.1|WP_038590132.1|1200874_1201891_+|3-isopropylmalate-dehydrogenase
MKIAVIGGDGIGTEVMAEGLKVLAAVRDDVETTDYDLGARRYLRNGELLTDADLDSLKEHDAILLGAIGDPANVPAGVLERGLLLPLRFKLDHYVNLRPSRLYPTSTSPLSNPGEIDFVVVREGTEGLYAGNGGTLRQGTVHEVASEVSQNTYFGAERVVRYAFELAMTRRKKLTLVHKTNVLVNAGGLWKRVVDELSQEFPEVEVDYNHIDAATIYMVDDPARYDVIVTDNLFGDILTDLAGAVTGGVGQACSGNINAVGEFPSMFEPVHGSAPDIAGQGIADPTAMILSVAMMLRFLGDEDNAARIEQAVEADVAARGDGPVSTTEVGDRIAAALK
>NZ_LT906467.1|WP_038590129.1|1199172_1200756_+|phosphoglycerate-dehydrogenase
MSKPVVLIADKLSQSTVEALGDAVEVRWVDGPNREELLAAVPEADALLVRSATTVDSEVIAAAKNLKIIGRAGVGLDNVDIPAATERGVMVANAPTSNIHSACEHAIALLLATARQIPAADATLRAAEWKRSSFKGVEIYGKTVGIVGFGHIGQLFAQRLSAFETNVIAYDPYANPARAAQLGVELVELEELMGRADFVTIHLPKTKETAGMFNADLLSKAKEGQILINAARGGLVDEQALADAIVNGPIRGAGFDVYASEPCTDSPLFALDEVVVTPHLGASTVEAQDRAGTDVADSVLKALAGEFVADAVNITGGRVGEEVARWLDLARKLGLIAGELLDEAPVSLKVTARGELSTEQIDSLGLSAVRGLFSGIVDEPVTFVNAPQIAESRGLTYSVETQTEARAHRSALEVQIVSGTGETVTVVGALTGLEGVEKIVRINGRGLDMRAEGRNLFFRYTDAPGALGTVGSKLGAKGINIEAAALTQASKGDGAILILRVESEVPAALVDEIAEALGASALQVVLD
>NZ_LT906467.1|WP_051904815.1|1198225_1199086_+|hypothetical-protein
MALQSSVCGIVAALCACALALGGCSEEAEQSPLEKARTANQSRHVAASFDDRPVVLDDTNGLVSSEYFFVRSETLVVSDATPEAQLRAASIAAYAHAPLLVYDEQHHAQVIQEMERLKAHTVLTVGDVPVAPLSGEVKVNRDPGGLEALGKMTSVRFRERAVQDPSQAQRVVTELDTSLPTWLNASWAQPTVKPNAKARPFPVHSRRDADMAPQVVATGESSIASISNARAFGAAVAYVDDPDPRASESTLLAMAGLADAPLVLLGTQFGRAIDIPERIMQAEENY
>NZ_LT906467.1|WP_038590156.1|1212107_1213385_+|ATP-binding-protein
MDEATDSTKYVRREIDTLLDEVMPYFPAIALEGAKGVGKTQTALQRAEHVLQLDSPGMSDLLAADPSIVHSRQGSVLIDEWQKYPPVWDIVRRAVDAGAPAGSFLLTGSAYPPHGAGIHSGAGRIDAVRMRPFAMQERSLARTKVRIADIFHGMQSNVEAEEVAVGVTDYAEEICRSGFPGIMELPPRLRTMRLNSYVERLATHEFEELGQRIRDPQSVIRWLSAYAAGSSRTDSYQSILDRATPGEADKPARKTTQGYRRLLEQLMILEPLPAWEPLQAGFPPLIRSPKHHLCDPGLAATLLGATPASLISGDPAQSELFAQLFESFVLLSARVAAETFGAKTWHLRARRGERELDILVEDMEKRILGIEVKVSPEVRDDDVAHLHWLRVQLGPKWAGGMVVHAGSHLYRRADGIWVVPLAALG
>NZ_LT906467.1|WP_038590159.1|1213500_1214688_+|chromate-efflux-transporter
METSAQRGNAAEVFAAFLKLGCTSFGGPVAHLGFFREEFVARRRWLSDAEYADLVALCQFLPGPASSQVGMALGLRRAGMLGLVAAWVAFTAPSAIALVCFALGVSKLGNVADAGWLIGMKAAAVAVVAHALIGMATSLVADKWRALIAVVAMVLVLLVPSPLIQVAAILVGAAAGYTLLREAAPANEPTSAPPLPKSTGITSLAIFFGLLLALPIIARGSDVGLMLIDGFYRAGALVFGGGHVVLPLLEQAVVPTRLVSADVFLAGYGAAQAVPGPLFTFASFLGASATGIHWALGAVLATVAIFLPAALLVVGAMPFWDALRAHPASRSVLAGANAAVVGILAAALYTPVFTAGIAGPATMALAAVAFVALRSWKVPAWAVVIAAAAVGLVAL
>NZ_LT906467.1|WP_157727800.1|1215339_1215516_-|hypothetical-protein
MSLKSHNNGWALYMVPYGKSIDQGALTVDLSGAQERAVFAQMAKRWNLPFDSADAKWW
>NZ_LT906467.1|WP_038587921.1|1215607_1216762_-|IS1249-family-transposase
MGTTSSGTQRWRCTHCGHTFTNPNTAKTSAYRFSVFIDWITGQRPLDAVAAAHNVSRRTLIRWFTYFWFIIVPCKPDPYRVYDQLFIDGTYFHKKCLLVAATSEHVVAWHWCTRETAYDYAKLFDLIAEPLVVTTDGSGGAHKAIKQCWPNAAIQRCLVHVRRDTIKDTTRQPTLTAHKALLRLGNQLTHITTRDQAIDWALRLNRFHDLYGDWLKDRTYRNQVAPEEIPKRIRDNQQWWYTHPRARRAYRRFERLYQQGHLFVWLNPPHRTTTELKTTTNSLEGGVNAQLKHLARAHRGAFDEHQRIIMDWWLYLHTQHHDDPLALAIEQDFGHAGYAHARQAHMRERDQANSPDGRPKVYDTGIDTDFNPSWAIRHGWAGRS
>NZ_LT906467.1|WP_038590163.1|1216897_1217644_-|hypothetical-protein
MINREDFTPARLPFYDADYTRLRNALQSVPVGRENPAQDTSGIAELIQREGRPTLIRRTQLILITVIFPIGLVLIGNAALSGFDPSLFHVTFIFLCMALLFYAAAGFMAYRGIREIRRRNRVQEAWNNGWLRLYPVLIGDLIKHGRAYSKGDEDLHVYNYSALCLLLNPNGEWMPLPEQKFTFCYDTEVPARGPREKDFLVVESAEAARVDPEHNRVKRHNVCFFGYGFPVLPGPTAGQCSLNRDSRP
>NZ_LT906467.1|WP_038590166.1|1217676_1218447_-|hypothetical-protein
MINRDDLTASRLPIYDTDYTRLTLAIQDAPVATPNPQRDPTGVAELIQRERISLPIQKGLFQPEPQSIPAYLFMAGFVVVAQMVSGNTFFTIVVVLMMVFGRGSYVYRERRRRQRIQQAWANGWLRVAPALIGDLVPKGDTAAKHIAKGQRATCTAPALVLSPKGEWIPVKEQLLRLNRNAGPHELRIAESGAAPAVDPQHNNGWVLYLAPYGEPVDQGAVAVNLSGEDEARIFSHIARTWQLPGHDADERWWEKY
>NZ_LT906467.1|WP_158407425.1|1218524_1220351_-|metallophosphoesterase
MRTSRRPNRLLRPAVAIMLTAALSASTVAVPTARAATDKIDRLTFGIGADETQANVAWQTSRTGAQYLEYWKTSSPDDKQRVESERGPHEALMTGLEPDTEYAYRVGSDRAGWTDEYTFTTDSGDDSWNFLAFADAQIGVDTKVKEQAAAWDKAVNTATSEHPDASFIMHLGDQIEGWGSATAQTKAFTAPEKLRSYRLGVLRGNHETYTAKRHFNDAFYLPNEENDSGNYFFTYNNVLFIGLDSNASKSDEIAQHAEFVQNAIDEHGAEADWVIVGFHHAPFSQGTHYTDDDVVRLREELTPKLSDAGVDLVLSGHDHIYTRSHLMEGAEPVIPEGAAKAGDVLIPDENQVLYVTSTTATGGKYYDFQDKDGNTHPRIREEYAADLAHDSTARWRQDYNPDYTSVEVSPEALKLTTYNINTPYVVDQVTLQKKNAEVPEEEPTTTPEETPTATTSAEPTKPSDAGTATVTTTATATETTKSEPEVITTTVSSEKTVTSTVTTVEDTVVTSTSTQTSPTTKEVEVTKTVPTTVEKTLTNASTVEGSTTITKTTTAQEPSVDTKQAGSSTAGIIFTVLGVLAALLAVIAGALTYLHPQLVQQVRDYFNI
>NZ_LT906467.1|WP_038590169.1|1220496_1222185_+|alkaline-phosphatase-D-family-protein
MNSEIRVNRRVVLQAAAASAAAVAVGAGGAYAARTSTVSTPETPTQAEQWDLPFLHGVASGDPLPDRVILWTRVTPSRDALPGSGLGEDVELEWQLDTSEDFKNPQTGTVVAIASADHTVHVDPTGLSPDTEYFYRFIVQSGEHAGATSPVGRTLTAPAEDAEIDQLNLAIASCANWESGFFNAYGDMAQRARNREIDHVVFLGDYIYEYPTGEYAGKSGVARMHHPEWEITTLEDYRQRYGRYRTDLHLQAAHGACPWIVVWDDHEIANNNWRDGAENHTDGRVEGEWAQRREAAMQAYFEWLPVRAESLSGERRLYRRFNFGTLAQLTVMDLRTYRDAETTGSQFNDPDRTMLGSEQFNWLTEQLKNSTARWDVLGNSVMISPMRFATIAGNDKANEAIGYIRERSTGIAVNSDQWDGYAAERDRLLTVLDEQNSNPLFLTGDIHSEWANSISATYGEIGCEMVTTSISAPNVDEILTSAFGTYHPEDNSTSLLVEKVIRDNNPWVNHIDFDAHGYGIASIHHDFVDMCYYRVSDVEDPEATVALGEKRQWRIGEGFVDA
>NZ_LT906467.1|WP_038590172.1|1222191_1222905_-|IclR-family-transcriptional-regulator
MRDGIIHYVRQYSEDSGIKVLDRSVAIVRAVARGEKPLAQLSEETGLPRATTHRIATALEVHHILSRTESGAWTIGPALASFTSGTSPLLLSAASPIMRDLVATTGEAVQLYELTGETRTCIAAEEPTAGLTYTVPVGSQLSLAAGSAARVYAAFSLIDATPFPASELRKVRETGLAESVAEREIGLASVSTAVRDRDGSVIAVLSVSGPAERLSPSPAGKWGEALLAARSRLEAAL
>NZ_LT906467.1|WP_038590175.1|1222954_1224376_+|3-isopropylmalate-dehydratase-large-subunit
MARTPQTLAEKVWNDHIVKAGENGEPDLIYIDFQLLHEVTSPQAFDGLRMAGRKMRHPELHLATEDHNVPTEGIVSGNLLEIAEPTSRTQVETLRKNCEEFGVTLHPMGDVKQGIVHTVGPQLGITQPGMTIVCGDSHTSTHGAFGSIAMGIGTSEVEHVMATQTLSLKPFKTMAVEVTGELAEGVSAKDLILAIIAKIGTGGGQGHIIEYRGEAIEKLSMEARMTICNMSIEAGARAGMVAPDEKTFEYVKGREYAPKGADWDAAVEYWKTLPTDEGATFDTVVEIDGSSLTPFVTWGTNPGQGLPLSSNVPDPEDFTDESSKQAAEKALAYMDLTPGTPLRDIAIDTVFLGSCTNARIEDLRAAASVVEGRRIAENTRMLVVPSSTLVKQQAEEEGLDRIFTEFGAEWRTAGCSMCLGMNPDQLAPGERSASTSNRNFEGRQGPGGRTHLVSPLVAAATAVTGHLASPADL

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Crispr_ID: NZ_LT906467_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_7

1257020-1257128

Orphan

Consensus_repeat	Method
ACTGGAACAAACGGAACAAAAAATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906467_7

>merge|NZ_LT906467|7|1257020-1257128|CRISPRCasFinder
ACTGGAACAAACGGAACAAAAAATAACTTTGTTCCACCCTTTGTTCCACACCTGAAACCACGCGCAAGCGGGGGAAATACCGACACTGGAACAAACGGAACAAAAAATA

>NZ_LT906467|7|6|1257020-1257128|CRISPRCasFinder
ACTGGAACAAACGGAACAAAAAATA	ACTTTGTTCCACCCTTTGTTCCACACCTGAAACCACGCGCAAGCGGGGGAAATACCGAC
ACTGGAACAAACGGAACAAAAAATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038590289.1\|1257518_1258892_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|350771
NZ_LT906467.1\|WP_038590276.1\|1251035_1251530_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_157727805.1\|1259152_1259302_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181215
NZ_LT906467.1\|WP_038590270.1\|1250389_1250605_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_157727806.1\|1259304_1259466_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038590283.1\|1254437_1256963_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283041
NZ_LT906467.1\|WP_144311817.1\|1249994_1250393_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038590303.1\|1261183_1261471_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_157727807.1\|1261489_1263121_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226974
NZ_LT906467.1\|WP_157727804.1\|1253416_1253581_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_084674406.1\|1252085_1253417_+\|DUF2800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378509
NZ_LT906467.1\|WP_038590292.1\|1258888_1259125_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_051904820.1\|1253600_1254323_+\|DUF2815-family-protein	unknown	unknown	gnl\|CDD\|378531
NZ_LT906467.1\|WP_038590286.1\|1257256_1257538_+\|VRR-NUC-domain-containing-protein	unknown	unknown	gnl\|CDD\|214959
NZ_LT906467.1\|WP_144311818.1\|1263194_1264442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038590279.1\|1251534_1251942_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_LT906467.1\|WP_084674274.1\|1260349_1261045_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235450
NZ_LT906467.1\|WP_157727803.1\|1249662_1250010_+\|DUF2188-domain-containing-protein	unknown	unknown	gnl\|CDD\|378323
NZ_LT906467.1\|WP_038590273.1\|1250601_1250970_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038590295.1\|1259462_1260137_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038590289.1\|1257518_1258892_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|350771	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins. Proteins belonging to the SNF2 family of DNA dependent ATPases are important members of the chromatin remodeling complexes that are implicated in epigenetic control of gene expression. The Snf2 family comprise a large group of ATP-hydrolyzing proteins that are ubiquitous in eukaryotes, but also present in eubacteria and archaea. The bacterial SNF2 present in this family are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.4491e-108
NZ_LT906467.1\|WP_084674406.1\|1252085_1253417_+\|DUF2800-domain-containing-protein	gnl\|CDD\|378509	pfam10926, DUF2800, Protein of unknown function (DUF2800). This is a family of uncharacterized proteins found in bacteria and viruses. Some members of this family are annotated as being Phi APSE P51-like proteins.	0
NZ_LT906467.1\|WP_157727807.1\|1261489_1263121_+\|hypothetical-protein	gnl\|CDD\|226974	COG4626, COG4626, Phage terminase-like protein, large subunit [General function prediction only].	1.57991e-09
NZ_LT906467.1\|WP_051904820.1\|1253600_1254323_+\|DUF2815-family-protein	gnl\|CDD\|378531	pfam10991, DUF2815, Protein of unknown function (DUF2815). This is a phage related family of proteins with unknown function.	3.97272e-59
NZ_LT906467.1\|WP_038590286.1\|1257256_1257538_+\|VRR-NUC-domain-containing-protein	gnl\|CDD\|214959	smart00990, VRR_NUC, This model contains proteins with the VRR-NUC domain. It is associated with members of the PD-(D/E)XK nuclease superfamily, which include the type III restriction modification enzymes, for example StyLTI.	1.11071e-10
NZ_LT906467.1\|WP_038590283.1\|1254437_1256963_+\|hypothetical-protein	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	7.7571e-74
NZ_LT906467.1\|WP_038590279.1\|1251534_1251942_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00102531
NZ_LT906467.1\|WP_157727803.1\|1249662_1250010_+\|DUF2188-domain-containing-protein	gnl\|CDD\|378323	pfam09954, DUF2188, Uncharacterized protein conserved in bacteria (DUF2188). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00181558
NZ_LT906467.1\|WP_157727805.1\|1259152_1259302_+\|hypothetical-protein	gnl\|CDD\|181215	PRK08059, PRK08059, general stress protein 13; Validated.	0.00577217
NZ_LT906467.1\|WP_084674274.1\|1260349_1261045_+\|hypothetical-protein	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.02862e-18

>NZ_LT906467.1|WP_038590283.1|1254437_1256963_+|hypothetical-protein
MKNRELKIAEATTRTSAHWTNTLTTIQDLTARAYDPTHVDCTTAEYKAMEKSARDKHKDVGGFVGGHLKNGRRRKGHVLARSIITLDIDNLPTDVDLAQVLADTLPYAWLIHTTLSHTPDGPRWRIWIWLSRDITADEYGAVARRIAQDINPGLEWFDPTTFEAERFMYWPSALTDGDYQAHVSRQKDILNPDDFLARFDVWQDVTTWPGVTPDDAKAMLGKSKLDDPRDKPGMLGAFNRAYTIPHAIDTFLGDVYKPGTTKDRYTYTGGTSSNGLIVYNNGHFAYSQHATDPAADGHSHSAFDLVRIHRFGDLDADAPTGTPANKRPSYLAMMDMANEDPGARAENAKATAAKINDVFQPITNDEAPAGELLKETEQLPGDTKAGETTDKSWLLDLETTKDGNFKNTITNFELIFTHDPRLNHINWNMHANQLEPQEPTHLPWHRVSNTWTENDQAQLRTTIARTYHGMDSPDKMQAALISTASSKNRAFHPVRDYYTNLLPWDGVPRLDTLLVDTLGAEDTDYTRAVTRKTFVAAHRRTFHPGCKFDHVLTLVGPQGVGKSTIFARMAGQWFSDSLTITDMKDKTGAEKLAGNLIIEIAELAGMRKAEAESVKSFISRNEDKYRPAYGRTVQHYPRQCIIVGTTNADEGFLRDTTGNRRWWPVTVAGKGWLGRPHDLDDYYIDQVWAEARARDKQGEKLYLTGDLLEVAEHIQAESVEADDRVGIVAEYLNKVLPPNWDAIPLMARRVWLDEGTLPDHLRETGMWNQTVERQTVSRMEIWAECFGRDPDVMRKIDAHEITAIMRQIDGWEDSGKTRTLPIYGKQRLFQKTKISEDVRAA
>NZ_LT906467.1|WP_051904820.1|1253600_1254323_+|DUF2815-family-protein
MAKTDRDVTAYGRLSYPNLFTARAANEQADPKYSATLLIPKSDTATIERIQAAIQAAVQDAVSRGVFKQAIDPAQTKYPPLRDGDKPNDNGEQRGEEFAGHWFIAAKASTKRKPFVVDQSLQPILQEAEIYPGCYINMAVQFFGYKNSGNQGVSASLVGVQFVKDGEQLGGEPLAAEDVFTAIPNTGGAPQAPAQGGFTQQQQPQAPAQGGFTQQQQPQAPAQGGFTQQQQPPAAPNLGF
>NZ_LT906467.1|WP_157727804.1|1253416_1253581_+|hypothetical-protein
MSQRRDITFTWDNGHHRPLKITRDPWAEGKPQTTLSLTTDEAKALAEFITTIID
>NZ_LT906467.1|WP_084674406.1|1252085_1253417_+|DUF2800-domain-containing-protein
MRTPINKKSISVEGAREGGASRFGFKRVQSLGTCAPAASGDTPAAVETTTEAESAPAHAARDHALLSASSAHRWINCTPAPYLEAQHPDTTSDAAAEGTEAHELAEHKLRQHIPIPTSWKPGEFYDEDMEDYTDDYVDHVTAELARTKEADPAAFLAIEQRLDFSHIVPGGFGTGDALIVGDGTMTVVDFKYGKGVEVSAVGNPQMRLYALGALATYGMIYQIEQVRTVIFQPRLGNISVEEISVDELTQWAETVVRPAAEKAAAGEGELRAGDWCQFCRHAPQCPALAKHYLDNLPTQPGAGEPPAPDTLSDEQIATIVAHSGELKKWLGKVEDHALAQATDGHTYPGLKVVEGRSVRKYTDEAAVAQTVQQETSEDPYQPRKVLGITAMTKLLGKKRFDELLGQLVHKPEGKPTLVPDSDKRPPMTLATPETVFEPIKKGA
>NZ_LT906467.1|WP_038590279.1|1251534_1251942_+|hypothetical-protein
MSWMTKDLALDLLSILTGAAQSAYDRVKAAPGEGEWPQPEAQPQKEVAAAPQQQPETPAQPQPEATAPAAPAADDLINQAKTACQRIVAQDGSPAWITGTLFPEFGVQSLTDVPADKLPSLLEKANAHLEGGGAQ
>NZ_LT906467.1|WP_038590276.1|1251035_1251530_+|hypothetical-protein
MKEYIDGEPRPDTSCLIHTHDGKYLGIMHGADAHLAAAAPDLAETIAGMEYEYTVQVMDETGGWAGIDKNGLATHDHGLMVWNTSQRAMRQSLLDLVEQAADAQQQENHMTNEFILAQLRRLAAGKKLQKHQLAELERDGLICTTDDDQIHLTTHGARMLRERN
>NZ_LT906467.1|WP_038590273.1|1250601_1250970_+|hypothetical-protein
MRNYDMLGSMDEDDLREELVGKTIASIDLQEQTIHLTDGTELRFIDTADCCAWFNSQLMVRNLTSNAITNVTKEYSSHKGAPEAWTLHVLAEDKTIVDVDIWGDSTTGYYCRSIDLKVVYPE
>NZ_LT906467.1|WP_038590270.1|1250389_1250605_+|hypothetical-protein
MSGDIHVACGALTGRIFAGPLTKDGSTWAHKTDVTEQAINAVVEHVRRTHGDTCTLRGQGLTITINVKEDQ
>NZ_LT906467.1|WP_144311817.1|1249994_1250393_+|hypothetical-protein
MSRTMMKPRHDRDEYVIWSTVVDLPVSGVMDRGTAKATWAAGAWSAMGTPISMEQAEESMQRADTKGWSLIDGEPGEYEGLNLANIDGYPGDYDFGAFKITDLATITRAIEAGDWGTLHNLCTNLSTVEDTE
>NZ_LT906467.1|WP_157727803.1|1249662_1250010_+|DUF2188-domain-containing-protein
MRKTTNGFVILFGEPKWEVRKPDGGLALKRFRTHAEAMAAADRLARTVEVTLPRAHALPTKRHTVQKNGLVIEFEQSRSYPQLQPSYLVVEPDERRPLALALLALAEKEETCHEQ
>NZ_LT906467.1|WP_038590286.1|1257256_1257538_+|VRR-NUC-domain-containing-protein
MLEREVEQALVREARKAGGIAPKFTSPGNAGMPDRIIILPGGKVCFVELKAPGQKPRPLQIRQMDRLTQLGCMVRTLDHPNQISGLIDEIRSA
>NZ_LT906467.1|WP_038590289.1|1257518_1258892_+|DEAD/DEAH-box-helicase
MKYVPHDYQAHTTQFIIDHPECAIFLGMGMGKTISTLTAIDELIRCRFEIRRALVIAPVRVARDTWPAEIKKWDHLTGLRVSPIIGTKAQREAAVRADADIYTIGRENVQWLVDYCGRRWPFDMVVIDELSSFKNPQAKRFKKLLKVRDQITRIVGLTGTPAPNSLLDIWAPFRLIDQGQRLGRYITHYRAQYFTPGKRSGHVVYNWVIRPGADQAIYDNIADITVSMRTTDYLQLPDVTTQHITVNLTPKQQQQVDTLKRDMVVDLDEDTTIDATNAATLSLKLQQLAGGAIYAEDGDDYIVVHDEKIQALAELVDQAAGNTMLVCFWFKHERDRILAAIPGARVLDTQQDFEDWNAGKIPVALIHPASAGHGLNLQSGGHIMVWFTTPWSLELYEQANARLHRQGQTEPVSIIHIDTANSIDQTVHQALARKDTTQQALITAVAAELDAAERAAA
>NZ_LT906467.1|WP_038590292.1|1258888_1259125_+|hypothetical-protein
MTKRITINVETQKIYADEGVTVYDSCVAGAVLFGTSLANAGHTCGWEVTEELGANLIAEIGRQLDEEKQGPPPWRADT
>NZ_LT906467.1|WP_157727805.1|1259152_1259302_+|hypothetical-protein
MTLRDKFQDWLEQADFEDILMTGFMALIVAMCLIIFIVAVIASIATILT
>NZ_LT906467.1|WP_157727806.1|1259304_1259466_+|hypothetical-protein
MHTPPSLEEPTPIYDQLMDETYGQIVHNLTYNGRQVRVKVINKDTSDTTRSTQ
>NZ_LT906467.1|WP_038590295.1|1259462_1260137_+|hypothetical-protein
MTTAQDLHHAARQLADTYAALAELKWTPERPTSERVMRTQGGSRSPSPDNDHAFSIEYELWRNDDNGAPGGLRMVAADALAYTTAPRHTPNQAGYLDEHLAPGILCAHIARHATEIAEHFPAVDELTELLRDQHRYLTRRIHHHRGQNLKALPVDTVATGFGTAADLAPLVSAAVGKHFTRDQIRYWGRSGRVTPYTTAEGTTHYRLGDLIEAAREYSDKRAHH
>NZ_LT906467.1|WP_084674274.1|1260349_1261045_+|hypothetical-protein
MHTRITTGKQGRTPRATHYIDASTLPNPHDEPWLRPRDGRDPNVQQWLLDQPGVPDQFARHLATIEALQPPTISITCSAGRHRSVALGEWLTTQLEAKGWAVQLNHHNLKTKKKQATTTQRGYGYRQQQIPRKNLLHNLIDGTECEYCARPMFRDPAKNFDGAPLEADHIDRDKTQPPKRLIHRRCNRTLNGKGKGTWVKHGPDWYAKHGQTVDNGTGDTLDWPGGHHIRW
>NZ_LT906467.1|WP_038590303.1|1261183_1261471_+|hypothetical-protein
MEFEQDELRSMVESVLEAVESADHLVDSDQASVDLALHLATIIDEARESGDPDAISKTSFGPMPTLNKVLTGLGLNPEGKQKLGLNEDVQEDEEF
>NZ_LT906467.1|WP_157727807.1|1261489_1263121_+|hypothetical-protein
MALTLPRVFTPPLRDLEEPEATWGHDMVWFCDEILGEPLSDYQRWLSMHALEVLTKEKALEFAMLEDDPAAEIAKVERLYGPAPVRGGRPIPNGRLRFTKIVILIARQNGKTDWVKKLIKWAIFRKRMPEVMAAAQTLNKAIDLWNEILLEIERDSKLKKILGRVDHSKGAQAMWTKGKRQRYRPVGIDENAGRGDTVDLLYIDELRTQKDFTGVNSLEATTTVPDNGLIVTTSNAGVGHSVVLRDYRELAKQPIDEGTWRDTRMALFEWSADPSADIDDVEGWKQANPDLGNGRITMATLHAERQSTLEATFRTERLCQWVDELGDDFEPIVPLERWGDLAVDRRVAVGDCVLAVEVSPDGESVTFVSAGQTSRGVHLEQRPGDKKFVVDETVEAIRRFVAENDDPAAVVLDKDSPAGVLVSHLLAVGIEPVLLNGGMVAGALREMKQAVADGRLTHDGAQEWVGALRVATVRDGAGRYPSIERFSGDVSVLVAGTFALWALNKFIAEFQVPYKQVEVEKKNPVGTFPVFSRKSLMGGALVG
>NZ_LT906467.1|WP_144311818.1|1263194_1264442_+|hypothetical-protein
MSWATQQVEFAEMRSTAKVAQVENAIRKPIEQAAWSVEPNGAPAEVVELVSTDLRLPVKGEDGQVARRTGRVSWDEHLKMALEAVFTGVAFFEQVYEMGDDGRFHLRKLAPRPNVSIRKIHVADDGGLVGITQRGVKGGKDAFIPVDRLVAYRHGRRDDTWQGSSVFAPARNNWLELMKMEKLNSLVMQRNGMGIPKYKASDLTDRSQVQEELNRGQELAESYAAGEVTAYSLPPGADMPVEGVSGTLPDIEKAMQYHASQIAIACNATHLNLTGAGGSYALANVQLGEFIQGLQSMAEWIADIASQHIVEDLVAVAFPDYDGPVPLITSTRIQVQKDLTPGDVSQLAAQGVLTKEPNLEQWVRSTFRIPAARSLYEALKAKKSLTDAEEELGVTLSGEELETSDEAKKQQEVQK

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Crispr_ID: NZ_LT906467_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_8

1494555-1494778

Orphan

Consensus_repeat	Method
CTCTCATCCAGCAAGCTCCCAGACTAATTCCGCACAGGCGGAAAAC	PILER-CR
CCAGACTAATTCCGCACAGGCGGAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_LT906467_8

>merge|NZ_LT906467|8|1494555-1494778|PILER-CR,CRISPRCasFinder
CTTCATGCAGCGAGTTGCCAGACTAATTCCGCACAGGCGGAAAACTGAGGCGGACTGTTAACGGCACCTCAACCCCCCTCTCACCCAGCAAGCTCCCAGACTAATTCCGCACGGGCGGAAGTTTGGGCGAGCTGATGCTTGCCGACGCTCGGTCGCCACGGCCAGCTCGCCATGGTGCCTCTCGTCCAGCAGGCTCCCAGACTAATTCCGCAGAGGCGGAAAAC

>NZ_LT906467|8|2|1494555-1494778|PILER-CR
CTTCATGCAGCGAGTTGCCAGACTAATTCCGCACAGGCGGAAAACT	GAGGCGGACTGTTAACGGCACCTCAACCCCCC
TCTCACCCAGCAAGCTCCCAGACTAATTCCGCACGGGCGGAAGTTT	GGGCGAGCTGATGCTTGCCGACGCTCGGTCGCCACGGCCAGCTCGCCATGGTGCCTCT
CGTCCAGCAGGCTCCCAGACTAATTCCGCAGAGGCGGAAAAC

>NZ_LT906467|8|7|1494572-1494674|CRISPRCasFinder
CCAGACTAATTCCGCACAGGCGGAA	AACTGAGGCGGACTGTTAACGGCACCTCAACCCCCCTCTCACCCAGCAAGCTC
CCAGACTAATTCCGCACGGGCGGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038590819.1\|1503374_1504550_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_LT906467.1\|WP_095066809.1\|1497646_1497946_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_LT906467.1\|WP_038590814.1\|1499995_1503340_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_LT906467.1\|WP_038590788.1\|1493076_1494291_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_LT906467.1\|WP_038590767.1\|1485757_1486405_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_LT906467.1\|WP_038590808.1\|1498558_1498882_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038590785.1\|1491017_1493024_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_LT906467.1\|WP_038590828.1\|1505889_1506810_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NZ_LT906467.1\|WP_084674292.1\|1494944_1496276_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_LT906467.1\|WP_038590764.1\|1484478_1485765_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181774
NZ_LT906467.1\|WP_038590779.1\|1489539_1490472_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_LT906467.1\|WP_051904857.1\|1496309_1497569_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_LT906467.1\|WP_038590776.1\|1488115_1489543_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|237857
NZ_LT906467.1\|WP_038590811.1\|1499169_1499991_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234651
NZ_LT906467.1\|WP_038590773.1\|1487436_1488105_-\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|235515
NZ_LT906467.1\|WP_038590824.1\|1504569_1505889_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_LT906467.1\|WP_084674291.1\|1486417_1487398_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|273015
NZ_LT906467.1\|WP_038590805.1\|1497961_1498555_-\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_LT906467.1\|WP_038590761.1\|1483929_1484415_-\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|376408
NZ_LT906467.1\|WP_038590782.1\|1490472_1490973_-\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038590819.1\|1503374_1504550_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_LT906467.1\|WP_095066809.1\|1497646_1497946_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	2.6349e-19
NZ_LT906467.1\|WP_038590814.1\|1499995_1503340_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_LT906467.1\|WP_038590788.1\|1493076_1494291_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_LT906467.1\|WP_038590767.1\|1485757_1486405_-\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	2.08777e-103
NZ_LT906467.1\|WP_038590811.1\|1499169_1499991_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234651	PRK00125, pyrF, orotidine 5'-phosphate decarboxylase; Reviewed.	6.67696e-115
NZ_LT906467.1\|WP_038590785.1\|1491017_1493024_-\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_LT906467.1\|WP_084674292.1\|1494944_1496276_+\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	6.73443e-09
NZ_LT906467.1\|WP_038590764.1\|1484478_1485765_-\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181774	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_LT906467.1\|WP_038590779.1\|1489539_1490472_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	5.57898e-158
NZ_LT906467.1\|WP_051904857.1\|1496309_1497569_-\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_LT906467.1\|WP_038590776.1\|1488115_1489543_-\|MFS-transporter	gnl\|CDD\|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	1.17723e-94
NZ_LT906467.1\|WP_038590828.1\|1505889_1506810_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	9.26213e-179
NZ_LT906467.1\|WP_038590773.1\|1487436_1488105_-\|ribulose-phosphate-3-epimerase	gnl\|CDD\|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	7.93531e-110
NZ_LT906467.1\|WP_038590824.1\|1504569_1505889_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_LT906467.1\|WP_084674291.1\|1486417_1487398_-\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|273015	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD].	2.76232e-95
NZ_LT906467.1\|WP_038590805.1\|1497961_1498555_-\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	1.57744e-103
NZ_LT906467.1\|WP_038590761.1\|1483929_1484415_-\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|376408	pfam00885, DMRL_synthase, 6,7-dimethyl-8-ribityllumazine synthase. This family includes the beta chain of 6,7-dimethyl-8- ribityllumazine synthase EC:2.5.1.9, an enzyme involved in riboflavin biosynthesis. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function. The family contains a number of different subsets including a family of proteins comprising archaeal lumazine and riboflavin synthases, type I lumazine synthases, and the eubacterial type II lumazine synthases. It has been established that lumazine synthase catalyzes the penultimate step in the biosynthesis of riboflavin in plants and microorganisms. The type I lumazine synthases area active in pentameric or icosahedral quaternary assemblies, whereas the type II are decameric. Brucella, a bacterial genus that causes brucellosis, and other Rhizobiales have an atypical riboflavin metabolic pathway. Brucella spp code for both a type-I and a type-II lumazine synthase, and it has been shown that at least one of these two has to be present in order for Brucella to be viable, showing that in the case of Brucella flavin metabolism is implicated in bacterial virulence.	1.46139e-52
NZ_LT906467.1\|WP_038590782.1\|1490472_1490973_-\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	1.1881e-68

>NZ_LT906467.1|WP_038590788.1|1493076_1494291_-|methionine-adenosyltransferase
MSTDPYYRLFTSESVTEGHPDKICDAISDAILDDMLKQDPASRVAVETLVTTGQVHVVGEVKTSAYSNIAKIVRDKLVGIGFTSSEVGFDGRTCGVNIAIGDQSAEISDGVTTSQEVREHDSAEENDQAGAGDQGLMFGYATNETPEYMPLPIATAHRLARRLTEVRKMGTVVGLRPDGKTQVTFAYDGDRPVALDTVVISTQHDPDFHGEALREALRTQVLEWVIKDAGLERFYTDDTKLLVNPSGSFVLGGPMGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEVQVAYAIGRANPVGLYVETFGTAAEGHTDASIQQAVDKVFDLRPAAIIRDLDLLRPIYGQTAAYGHFGRTDVELPWEQLNKVEELKAATQ
>NZ_LT906467.1|WP_038590785.1|1491017_1493024_-|primosomal-protein-N'
MSQPAARFPVARVLPLLGLPQLDRPFDYLVTEGESDAAQPGVRVRIRFAGRLVDAIVLERTAASAHEGSLRFIERVISPEQVAPEQLRSLIDALAQRYAGVRSDIYRAAIPARHAKAEETDTSTPWAQLGEVAEPDLSAWSSYEFGESFVDAVLEGKMARAAWQVAPGDDWAGALAALGVKLARDGGGVLIVVPDQRDVDSCERALRELVSAKQVTTLTASQGPQARYSRYLSILHGQGRIVVGTRSAAFAPVRDLRLMVLMHDGDANLVDPRAPYVHAREVLTTRSAMERVPLVLGGWARTAEAQLFVESGWMHELVAPRPVLRQLSPYIHAAGDSDIALERDPRARHARLPSEAFMAARRALKRGTPVLFQVPRTGYIQSLACGQCRTPARCRWCNGPLGLPSGEEAAAPTCRWCGRMDPAHVCPACGSRRVRATVLGTERTAEELGRAFAQFRVRTSWGDKVLDAVPGEPAIIVATPGAEPPAEGGYGAAILLDVWALLQRPDLRATEDTFAKWLQAATLVQPHSAGGEVVVVADPALPVVQHLIRWDAAGHAALELAHRRDARFPPAVHIAVVDAPRHALEDFFAHVELPEHAEVLGPVDLPAGVTLPGEWDVPRYGEAQRMLVRSPLRGRTELGRALRAGAVHRAARKQTLPLRIQVNPIDVG
>NZ_LT906467.1|WP_038590782.1|1490472_1490973_-|peptide-deformylase
MTALSLRLFGDPILKTAARPVEEFGEGLRRTAAEMLDIMDASGGVGLAANQVGLGIRLFVYDCNGMRGHLVNPVWHQVGEETQTGVEGCLSVPGVQGTITRAANVLATGNDVQGRPVTIAASGLLARCIQHETDHLDGVMFMQRMEREERKAAMAAIHASEWWKEN
>NZ_LT906467.1|WP_038590779.1|1489539_1490472_-|methionyl-tRNA-formyltransferase
MRVVFAGTPEPAVVALQRLIDSEHEVVAVLTRPDARRGRGRTLHPSPVKALAQEHGIEVLTPESLRENEEVRARLAALAPEAIPVVAYGNLIPKDMLELAPHGWVNLHFSLLPRWRGAAPVQAAIREGDATTGATTFRIDEGLDTGEVLATLTEDIAADDTADSLLTRLAYAGADLLVETMTGLENGTLAPTPQEGEASYAPKLTTDNARIDWHAAADQIDRAVRSHTPGPGAWTTWDGQRVKVGPVKVGETDSLEPGHVSVEKNEVRVGTGTQDVILTTVQPPGKKMMAAADWGRGLQQDVVSQGVVFE
>NZ_LT906467.1|WP_038590776.1|1488115_1489543_-|MFS-transporter
MSGGFRSRAAGRREPKKTAPAARRRAPKQQRQVAINDPAREAALEVLHRVATDGAYANLVLPGLLRERRITGRDAAFATELTYGALRTQGVLDAVIAANSSRELDKIDPWVLAALRLGTYQLLYTRVSPHAAVDTTVRLVEAAGQGKAKGFANGILRTIGRSTRQQWFDRLMPSDALDALAFEHAHPAWIARSFHTALGAQAGELAAALEADSARPGVHLVARPGELSAEELALAVGGEQGRYSPYAVYLEEGDPGELAPVREGLAAVQDEGSQLIARAVAEVSVDDDQGRWLDLCAGPGGKAALIGALARIDGATVDAVEPSKHRADLVRKAVKGLPVNVHTVDGRDPGLNPGYDRVLVDAPCSGLGALRRRPEARWTKQESDIDELVPLQKALLASAISLTRAGGVVIYSTCSPDVRETRGVVDDALGRGEVEELDASPYACGMTETGEARSVQMWPHRHGTDAMFFAVLRKK
>NZ_LT906467.1|WP_038590773.1|1487436_1488105_-|ribulose-phosphate-3-epimerase
MIYIAPSILAADYANLGNDVRKVPNADLIHVDIMDGHFVPNLSFGPDVTKAVDGVTDQFLDMHLMIEDPERWFPTYVQAGGDRMIFHVEATRDHVAAGRQCRELGVQSGFAVKPGTPIEPYLDSVGEFDQVMVMSVEPGFGGQKFMPEVLGKVMALRDHIKAEGLDTIIGIDGGIANATIAQAAEAGVDAFVAGSAVFGADNPAEAVERLRELAQEARGGAN
>NZ_LT906467.1|WP_084674291.1|1486417_1487398_-|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MAAAISAGESVRGTTSPNPPVGCAIIDASGHLIAVGATSPAGGAHAEVNALAAAGERAQGAVAIVTLEPCAHTGRTGPCTHALIQAGVAQVIYLTKDPNPEAAGGAQVLRRAGVQVAYEPREVVALGAWWASISMQRPAVTWKYAATLDGFTAAADGTSKWITGEAARAHVHRDRARRDAIIVGTGTALADDPQLTARRPDGELYSTQPERVVVGTREITGNLARLGFTQYPDPESALAALWERGARDVLVEGGASLALSFVNAGLVDRIQAYVAPALLGAGRGVLGGPLATTMSQAQRFRVERVIQLGEDVLIEMARKDLLEQDK
>NZ_LT906467.1|WP_038590767.1|1485757_1486405_-|riboflavin-synthase
MFTGLIEEVGTIEAVELGETDARVCIRAPKVTEDARNGDSIAVDGVCLTVTGLPEALEDGQPRPERFWADVMPETMRRTRLGLANQGTSLEGVRVNLERALKVGDRLGGHIVQGHVDGVAELLSRTPGPRWDVLRFSLPEGLRRYVVEKGSIAVNGTSLTVSAVGDDFFEVSLIPTTLAETTAGELRVGEPVNLEVDQVAKYVENMVRAKVNDYE
>NZ_LT906467.1|WP_038590764.1|1484478_1485765_-|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MSNGSRLDAVEDAIAAIARGEAVVVVDNEDRENEGDLIFAAEAATPELVAFMVRYTSGYICVALENEDADRLNLPPMVARNQDARGTAYTVTVDAATGTTGISATSRAETLRRLASAETTVNDFTRPGHVVPLRARPGGVLARDGHTEASVDLARMAGLRPAGALCEIVSEQDPTDMARFDELREFADTHGLVMISIDQLIAYRRRHERFVSRVTETRLPTEFGEFHAVGYRNDIDGTEHVALVAGDPAQLAGADDVLVRVHSECLTGDAFASARCDCGPQLHESMRRIHEAGRGVVVYVRGHEGRGIGLLAKLQAYALQDQGLDTVDANLEQGLPIDAREYSVAGQILADLGIESMQLLSNNPDKVHALSGFGPQVAGRTRIEIVPSHDNIGYLRTKRDRMGHDLPGVAQWLDAHTPDAGGGAPSAG
>NZ_LT906467.1|WP_038590761.1|1483929_1484415_-|6,7-dimethyl-8-ribityllumazine-synthase
MASSGEPEPYSPQAEGLTVAIVSTRWNARIVDTLRERALATARELGAKADEYLVDGAMELPVVVQACGRRYDAVVALGCVIRGKTPHFEVVCDSVTSGLTRVALDEGTPVGNGVLTVEDEDQAYERSGGEDAKEDKGEAAVRAALGAAVELGKVRALRARD
>NZ_LT906467.1|WP_084674292.1|1494944_1496276_+|HNH-endonuclease
MSDTKAPPKTPTQVREEIIGHYTALSQHHAQVLSAISQLCERDIQREYACKSIPVWLIRYCRMKKSRAYEYTAVAVKLRRFAYLCEAFHKGKIDYSTVRLLLKHIHSENEHRLVDLAIELGYHGLEEALAGQQDNNTDPTPPAKGLHLREDGRLTRGWFTMSAVDGAQFKAALKAGALAYHAGLNSMSDYVDEKGEFDETKLTTALEEATTRPDTSGADILNTGFGLPPQRFLLHALMGMVQLVRSGMAKSTRLAPAAQVNIMMSMSGNGYLPNNKAVPAFNLANVAANAEARGVLFDDHGLIINYGRKRRLVSKTQMEALMSMWGHQCAMPGCNHDMFMQAHHIDEWVNGGHTDLDNLIPLCSSCHSMVTDREILIMRHGIEIHFIAPDGARWVSKDRQTPKRDDNARLQCELEDYGDNFADKPCDDNECENCTCTTEENPD
>NZ_LT906467.1|WP_051904857.1|1496309_1497569_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MSDVQKRSVKAPTDESRGRRVVVGVAGGIAAYKACHLVRDFKEAGDDVRVVPTPSALEFVGAATFEALSGHPVDTGVFSRVDEVQHVRVGQEADLVVIAPATADVIARIAAGRADDLLTATVLVATCPIVIAPAMHTEMWLNPATQANVTTLRERGITVLEPAHGRLTGKDTGPGRLLEPHVIAEMARTVLATGPLSQSLSGKRVLISAGGTQENIDPVRYIGNRSSGRQGFALADVAAHKGANVTVVAGNTEELETPAGAEVVRVRSTREMEAAMRERAAEADVIIMAAAVSDYRPEHEATSKLKKGQANEDLETLHLVENPDILRGLVAMRDAGQTQARILGFAAETDQPLEHGQAKLARKGADMLMVNDVSGGKVFGQPRNSGWLLTRDGNVAEVADGSKHEVAARIWDAVERFEK
>NZ_LT906467.1|WP_095066809.1|1497646_1497946_-|DNA-directed-RNA-polymerase-subunit-omega
MTEDQSQVTADSPEQKTYDTPQGITAPPIDELLTKVSSKYALVIFAAKRARQINSFYQDSEDGVFEFVGPLVTPEPGEKPLSIALREIQAGLLEHEEGQ
>NZ_LT906467.1|WP_038590805.1|1497961_1498555_-|guanylate-kinase
MTEVSPRGRLVVLAGPSAVGKSTVVHRLVSDVPDLYFSVSMTTRAPRPGEVDGEDYFFVSADDFQRRIDAGEMLEWADIHGGLQRSGTPAGPVQEALDAGRPVLVEVDLAGARNIKRLMPEASTVFLAPPSWEILVQRLSGRGTETEEVIQRRLLTAREELNAQHEFDDVVVNDDVDTAVAAIASILMNSTNNETNE
>NZ_LT906467.1|WP_038590808.1|1498558_1498882_-|hypothetical-protein
MALPQLTDEQRKAALAKAAEARKQRAELKASLKRGDTNLKDVLAKAESDEIIGKTKVSALLEAMPKVGKVKAREIMEELEIAQTRRLRGLGERQRRALLERFGFSED
>NZ_LT906467.1|WP_038590811.1|1499169_1499991_-|orotidine-5'-phosphate-decarboxylase
MAQSVDTEPGFGQRLVDAGTHHGRLCVGIDPHAGLLEQWGLSDSVEGLREFSRICVEAFAGHVALVKPQVAFFERFGSRGFAVLEETLAALRERDTLVVADAKRGDIGSTMAGYADAWLAPGSPLEADAVTLTPYLGVGSLDPAIELAAAHGKGVFVMSANSNPEAEAFQSSLIGERTVAQYMVDGCAAYNDGAGVGHVGVVVGATVQNPPVLEHLNAPVLMPGVGAQGATMKDVARIAGAQAQLVFPNVSRSVLKAGPDVDELRKQARDLAK
>NZ_LT906467.1|WP_038590814.1|1499995_1503340_-|carbamoyl-phosphate-synthase-large-subunit
MKREDINHVLVIGSGPIVIGQACEFDYSGTQACRVLKEEGLRVTLINSNPATIMTDPEFADHTYVEPIEPHYIDMILEKEAEQGNPVDAILATLGGQTALNAAIQLDRQGILAKHGVELIGANIDAIERGEDRQKFKDIVEKIGGESARSRVCYTMDEVHETVEELGLPVVVRPSFTMGGLGSGLAFTMEDLDRIAGGGLEASPEANVLIEESILGWKEFELELMRDGDDNVVVIASIENVDALGVHTGDSVTVAPALTLTDREYQTMRDQGIAIIREVGVDTGGCNIQFAVNPEDGRIITIEMNPRVSRSSALASKATGFPIAKIASKLAIGYTLDEITNDITGVTPAAFEPTLDYVIVKMPRFAFEKFPGSDDTLGTSMKAVGEAMGIGRNYIQGLNKVMRSMEDKPNGFWTRPDEYFAEGRENDVAAVLEDLKVPTDKRMYDVELALRLGASVDEVHEASGIDPWFLAELQALVEFRQQLLDAPVLDAELLREAKAYGLSDAQIAALRPELAGEDGVRSLRWSLGIHPVFKTVDTCAGEFEAQTPYHYSAYEMDPNAENEVAETGREKVIILGSGPNRIGQGIEFDYSCVHAALELSRIGYETVMVNCNPETVSTDYDTADRLYFEPLTFEDVMEIYRAESASGTVAGVIVQLGGQTPLGLAQRLADAGVPVVGTTPEAIDSAEDRGEFGDVLEAANLPAPAYGTATSFEEAREVAAGIGYPVLVRPSYVLGGRGMEIVYDEASLHDYIDRATELSPDHPVLVDRFLDSAIEIDVDVLCDGEEVYLGGVMEHIEEAGIHSGDSGCALPPMTIGPEDIAQVRRSAEALAHGIGVKGLMNVQFALKDDILYVIEANPRASRTVPFVSKATGVHLAKAAARIMMGATLAELREEGLIPTDYDGGSLPLDHPIAVKEAVLPFTRFRRPDGSLLDTILGPEMKSTGEVMGLAPSFGVAYAKAEVAAFGPLPTEGTVFVSVANRDKRTLIFPIQRLSTMGFKIVATAGTAQMLRRNGIACETALKASEVREGGEGTSIVDRISEGEIDLILNTPAGSSGARHDGYDIRAAAVVAGVPIMTTVQGVTAAVQGIEAIRGNEITVTSLQELEHAGEEAKA
>NZ_LT906467.1|WP_038590819.1|1503374_1504550_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MTESRIPAALVLGDGHVYRGYAFGAVEPDSDIDPVYGEAVFTTGMTGYQETMTDPSYHRQIVVMTAPQIGNTGWNDEDNESRDGRIWVAGLIVRDLSKRVSNWRAERSLEEEMRAQGIVGISGIDTRSVVRHLRNEGSAPAGLFVGEASQSDVQDLVAKVNEQPTMAGADLSAQVSTDSPYTIEAVGEKRYTVVAYDMGIKTATPNHLAQRGVETIVVPANTAYEDILQYKPDGVFISNGPGDPATADEMVAITRKIIHKKLPLFGICFGNQILGRALGLDTYKLKFGHRGVNVPVKNHLTSKIDITSQNHGFALAAPEGIGAGETFDTEFGPAVITHTCLNDDVVEGVALENGMAYSVQFHPESAAGPHDANPLFDQFIALMDEHSPNAK
>NZ_LT906467.1|WP_038590824.1|1504569_1505889_-|dihydroorotase
MGKFVIKNVRPYGEDEVQLLIDGGVIQAIGKDLGLDETDESFEVIDAGGKVLLPGLVDMHVHLREPGREDTETIATGSDAAAKGGFTAVFTMANTSPVIDQPFLADAVWEKGQAYGKCDVYPVGAITQNLEGKQLSEIGLMSQGHVRMFSDDGKCVNDPQVMRRAVEYAKAYDVLLAQHAEDHRMTADAVAHEGETAARLGLGGWPRVAEESVVARDVIMTRDYGGRLHICHASTEGTVELLRWAKEQGINVSAEATPHHLLLTDEKLETYDGVYRVNPPLREQRDTIALRDALLDGTIDVVATDHAPHGSEDKCVEFEHAKPGMLGLETSLPIIAQVFVESGLADWRFVAKVMSERPAEILRLEDQGRPIAEGEPANLVLVDPGAAWTVEGDKLRSKASNTPYEGTEFATSIALTMLRGEVTYRADETETETTTTSTK
>NZ_LT906467.1|WP_038590828.1|1505889_1506810_-|aspartate-carbamoyltransferase-catalytic-subunit
MKHLIDIADLSRDEALAIMDEADRFKEALDGREIKKLPTLRGRTIFTLFYENSTRTRSSFETAGKWMSADVINISASSSSVKKGESLKDTAQTVEAVGADAIVVRHPASGAAQLLKQWLPGTSIINAGDGKHQHPTQALLDAVTMRQRIGEIAGRKVVIVGDIVHSRVARSNVDLLHLLGAEVVLVAPPTLLPTGVEHWPARVAYDLDAEIADADVVMMLRVQAERMHGGFFPSHREYATLYGLSAQRANRMKEGAIIMHPGPMLRGMEINFAVAERDNTAVLQQVSNGVYTRMAVLFTLLVGEEE

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Crispr_ID: NZ_LT906467_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_9

1689977-1690070

Orphan

Consensus_repeat	Method
CAAACGGAGCTAGCTCCATTTAGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906467_9

>merge|NZ_LT906467|9|1689977-1690070|CRISPRCasFinder
CAAACGGAGCTAGCTCCATTTAGACAACGCGCGCAGTAAATCCCCAGCTCGAAAAACGGCACTGCAGCCAAACGGAGCTAGCTCCATTTAGACA

>NZ_LT906467|9|8|1689977-1690070|CRISPRCasFinder
CAAACGGAGCTAGCTCCATTTAGACA	ACGCGCGCAGTAAATCCCCAGCTCGAAAAACGGCACTGCAGC
CAAACGGAGCTAGCTCCATTTAGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038591224.1\|1686762_1687971_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|308008
NZ_LT906467.1\|WP_038591259.1\|1699871_1701380_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_LT906467.1\|WP_038591221.1\|1685565_1686726_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_LT906467.1\|WP_038591212.1\|1681863_1682325_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038591245.1\|1694976_1695795_-\|elongation-factor-Ts	unknown	unknown	gnl\|CDD\|236491
NZ_LT906467.1\|WP_084674417.1\|1691284_1692148_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_LT906467.1\|WP_038591218.1\|1683691_1685503_-\|cell-division-protein-FtsI	unknown	unknown	gnl\|CDD\|223839
NZ_LT906467.1\|WP_038591257.1\|1698702_1699875_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NZ_LT906467.1\|WP_038591233.1\|1692238_1692796_-\|ribosome-recycling-factor	unknown	unknown	gnl\|CDD\|178850
NZ_LT906467.1\|WP_038591236.1\|1692868_1693978_+\|amidase	unknown	unknown	gnl\|CDD\|223232
NZ_LT906467.1\|WP_038591227.1\|1687980_1689144_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_LT906467.1\|WP_038591252.1\|1697779_1698673_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_LT906467.1\|WP_051904880.1\|1678623_1679640_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_LT906467.1\|WP_084674303.1\|1689336_1689837_+\|DUF2631-domain-containing-protein	unknown	unknown	gnl\|CDD\|371308
NZ_LT906467.1\|WP_038591239.1\|1694098_1694824_-\|UMP-kinase	unknown	unknown	gnl\|CDD\|234735
NZ_LT906467.1\|WP_051904881.1\|1697267_1697783_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_LT906467.1\|WP_038591206.1\|1679684_1681091_+\|mycothione-reductase	unknown	unknown	gnl\|CDD\|181142
NZ_LT906467.1\|WP_038591230.1\|1690137_1691241_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|184689
NZ_LT906467.1\|WP_095066772.1\|1682749_1683646_-\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|237252
NZ_LT906467.1\|WP_038591209.1\|1681410_1681809_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038591224.1\|1686762_1687971_-\|site-2-protease-family-protein	gnl\|CDD\|308008	pfam02163, Peptidase_M50, Peptidase family M50.	1.94144e-49
NZ_LT906467.1\|WP_038591259.1\|1699871_1701380_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	6.09768e-158
NZ_LT906467.1\|WP_038591221.1\|1685565_1686726_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_LT906467.1\|WP_038591233.1\|1692238_1692796_-\|ribosome-recycling-factor	gnl\|CDD\|178850	PRK00083, frr, ribosome recycling factor; Reviewed.	1.43397e-100
NZ_LT906467.1\|WP_038591245.1\|1694976_1695795_-\|elongation-factor-Ts	gnl\|CDD\|236491	PRK09377, tsf, elongation factor Ts; Provisional.	2.20343e-122
NZ_LT906467.1\|WP_084674417.1\|1691284_1692148_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	1.69264e-56
NZ_LT906467.1\|WP_038591218.1\|1683691_1685503_-\|cell-division-protein-FtsI	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	2.95682e-66
NZ_LT906467.1\|WP_038591257.1\|1698702_1699875_-\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	3.38921e-76
NZ_LT906467.1\|WP_038591236.1\|1692868_1693978_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	8.90523e-49
NZ_LT906467.1\|WP_038591227.1\|1687980_1689144_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_LT906467.1\|WP_038591252.1\|1697779_1698673_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.74603e-124
NZ_LT906467.1\|WP_051904880.1\|1678623_1679640_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	2.1375e-29
NZ_LT906467.1\|WP_084674303.1\|1689336_1689837_+\|DUF2631-domain-containing-protein	gnl\|CDD\|371308	pfam10939, DUF2631, Protein of unknown function (DUF2631). This is s bacterial family of proteins with unknown function.	3.62909e-29
NZ_LT906467.1\|WP_038591239.1\|1694098_1694824_-\|UMP-kinase	gnl\|CDD\|234735	PRK00358, pyrH, uridylate kinase; Provisional.	4.02597e-134
NZ_LT906467.1\|WP_051904881.1\|1697267_1697783_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.79405e-17
NZ_LT906467.1\|WP_038591206.1\|1679684_1681091_+\|mycothione-reductase	gnl\|CDD\|181142	PRK07846, PRK07846, mycothione reductase; Reviewed.	0
NZ_LT906467.1\|WP_038591230.1\|1690137_1691241_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|184689	PRK14459, PRK14459, ribosomal RNA large subunit methyltransferase N; Provisional.	0
NZ_LT906467.1\|WP_095066772.1\|1682749_1683646_-\|type-I-methionyl-aminopeptidase	gnl\|CDD\|237252	PRK12896, PRK12896, methionine aminopeptidase; Reviewed.	3.61891e-149

>NZ_LT906467.1|WP_084674303.1|1689336_1689837_+|DUF2631-domain-containing-protein
MAVAHAKDKAPQVYNGVSEADVPSARFGWSEQSRGTIQAAGWVSVLFLIAYNFGNHQGHVETIWLITLAVLIALGLVLHATQPKLNQVRTVTSHNKPQGHVEPDWTYDQKTLSGVYADLDERQLRALNIDPARLEGLNTQQAVGAADGVDGVEVVEVAPRGKHAAR
>NZ_LT906467.1|WP_038591227.1|1687980_1689144_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MKRIVILGSTGSIGTQACEVIRANRDTFEVVGIAAGGRDPEAIIAQAKEFGLKPDQVAVQNGESAKKVGEALGGTAISGEQAARILTEAHQADVVLNALVGAAGLSSTLAALRSGAVLALANKESLVAGGQVVLREAPEGALVPVDSEHSAMAQALRAGRREDVASFVLTASGGPFRGQTREQMWDVTPKQAVTHPTWSMGTMNTINSATMVNKGLELIEASLLFDVKPSLIDVTVHPQSIVHSMVTFVDGATIAQASPPSMKMPIAHALAWPGRVAGAQPALDFSTASEWTFEPLDDDAFPAVELARQVAAQGDPYPAIYNAANEVAVDAFFDGQIRFPQIVDTIKEVLDGASNYAAAPSSVEEILAVDARARREAAAAAARLSGA
>NZ_LT906467.1|WP_038591224.1|1686762_1687971_-|site-2-protease-family-protein
MGIFGIVLFALGIAASIALHEAGHLAVARACGMRVRRYFIGFGPTVWSTTRGHTEYGVAALPFGGFCDIAGMTAQDELTPDEAPRAMYKKPWWQRVAVMSGGIVMNLLIGVVITYLVAVLAAIPNPYADRTPTIGELACTSDQVDAETLAPCTGQGPAAEAGLRQGDKVLAVDDQDVVAFTDLRDYVMARPGETVAVEVEREGQALTVDVHVDSVTRLDPGSGQEFQAGAIGVTSAPVKDAMRQFGPVEAVPATLRFTGQMLEATVDGLIAFPSKIPGVVASIFGQERDVTGPVSVIGASRAGGELVEQDLWSVFWMLLASLNFFLALFNLVPLPPLDGGHIAVVLYEKLRDMIRRLRGLGPGGPADYQKLMPLTYAMAAALLAVGVFVMVADVVNPIRLGG
>NZ_LT906467.1|WP_038591221.1|1685565_1686726_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MNLPIGLGIPEGPPPTLAERRKTRQLMVGDVGVGSEHPISVQSMTTTKTHDINATLQQIAQLATTGCDIVRVACPKTVDADALPAIAAKSPIPVIADIHFQPKYIFAAIDAGCAAVRVNPGNIKEFDGRVKEVAKAAGDAGIPIRIGVNGGSLDKRLLEKYGKATPEALVESAIWEAGLFEEHGFGDIAISVKHSDPVLMVEAYRQLAEQTDYPLHLGVTEAGPKFMGTIKSSVAFGALLSQGIGDTIRVSLSADPVEEIKVGDQILQSLNLRPRKLEIVSCPSCGRAQVDVYKLAEEVTAGLENLEYPLRVAVMGCVVNGPGEARDADLGVASGNGKGQIFVKGEVVETVPEADIVETLIRHANRIAEEEGLAKGEGSAEVKVTN
>NZ_LT906467.1|WP_038591218.1|1683691_1685503_-|cell-division-protein-FtsI
MQRLLALLTGAVVLTSALAACTPRPNDAQPAAQAMLDALVSRDTEGLSSLVDDPSSASASINATWDGLQADSLDAELTGVSQSENLATATYSMHWQLPRERDLSYEAQMTLTQTGDDWTVRWQPSVLHPRLGAHQHLELRSITPKEASVVSSDGVELLRPGIAYRLLVDTNAMGTAPETAFRISEALAAGHEADRAVPLRDAAQLTTDLENAQGTYSVAMVPQGAQRAVEDKLGGLAGVRLNEEAAMVNADPSFAPDIMARVGALVREDLEGEAGWNVSVVNENGAAYEELEREDAAPAPAVHISLDHRVQRAAEAALEPVAGQQAMIVAIRPSTGGILAVAQTPAADKDGNVATMGQYPPGSTFKIITAAAGMEKQGLGTGSIVPCPGTMDIFGRTVTNYAGFSLGNVSLESAFAHSCNTTFADISTKLAPGELAQIGKQFGLGLDMKIPGLDTITGSIPEGEEPLDRTEAGYGQGLDLASPFGMALVAATAAHGAMPVPYLIQGEKTELSEEPGAMPPEAVGQLQQMMAAVTAAGGTANGMSAGGDIRGKTGEAEINGGSHSWFAGYRADDDIAFATLVVLGGGSEAAVAITDRMLHNLNP
>NZ_LT906467.1|WP_095066772.1|1682749_1683646_-|type-I-methionyl-aminopeptidase
MNQRGKLTPGKPTPIRKVPASIERPEYAWKDDVQENVGEPLIQTAENIERMREASKIAANALAVAGAAVKPGVTTDEIDRVAHEFMCDHGAYPSTLGYRGFEKSCCVSLNEIVCHGIPDTTVIQEGDIVNIDVTAYKNGVHGDTNATFLAGEVTQEHRDLVERTYKATMRGIKAAKPGREINVIGRVIESYAKRFGYNVVTDFTGHGVGTTFHNGLVVLHYDSDAYRDVLEPGMTLTVEPMINLGGLEYDIWDDGWTVQNRDGEYTAQFEHTIVITDDGNEILTIPDEQYAAGQLMLG
>NZ_LT906467.1|WP_038591212.1|1681863_1682325_+|hypothetical-protein
MRNFRTAAVATATALTVALGGVTVATAETTDGETSTESTYTPHPSRPKEETKNNDSSVAFKGFDGRKGDKEFGESIKDGVKGSFDGKGSSHYVNDADKPFYGVDAFGKEKDAEAMPQWARIWYDGTIVAGIGALVGLIIAGFNFASYNGLIKL
>NZ_LT906467.1|WP_038591209.1|1681410_1681809_+|hypothetical-protein
MRNFRKAALAGATAVAVAFGSTTMAVAEETNNDVELINETDQAEGTDTPSDNNEGKSKASTKIGAGLGAYDKDGATAADGEAIFGSDKTGFGEQPGWAKAFYALTVFSAVSAFIGLVVGPAYNFVVHGMPNL
>NZ_LT906467.1|WP_038591206.1|1679684_1681091_+|mycothione-reductase
MSANIEHYDVAIIGTGSGNSILTPEFDDKKVAIIEEGTFGGTCLNVGCIPTKMFVLAADAALQAREAKRLNVDLEFHGADWQAIQKRVFEERIDQIASGGEAYRRGDECPNVTVYDMHASFVGPKTLATGQGGVEKQISADTIILAAGARPFIPEWAKEVPFHTNEDIMRLEELPKSLTIVGGGFIAMEFAHIFDGLGCEVTIVNRSPLMRALDTELHERFNELANERFTTHIGRTVSSARERDGQVELVLDDDTVVASEALLIATGRVPNGDRLNAEAGGVELSEDGRVKVDEYGRTTAEGVWALGDVSSPFQLKHVANAEQRAVTHNVLATMRGSDELVPMPHEHVPYAVFTHPQIAVVGLTEHQARDAGHDVTVKVQNYGDVAYGWALEDKTGLVKLIADRKTGKLLGAHLLGPQASTLIQQLITVMAYDMDLRDFVRRQYWIHPALPEVVENALLGLDLAFREV
>NZ_LT906467.1|WP_051904880.1|1678623_1679640_+|alpha/beta-hydrolase
MTKHATTTPSEVDWYPDILGDGYESAYLHQGKDPDTGKSTRATLVRATINADKRDPKKPAIMWVHGMSDYFFQTHVAEAFTAAGYPFYALDLRRCGRSRQNGEYWHYTEDLAHYFPELSDALRVITHEHGHLVPLAHSAGGLITSLWVDHLRRTSPEDHALVQGLILNSPWIDLQFSPLLVKTAKPVLKATGRILPRVALPDRGFGAYGKSIHADHHGEWDFNTKMKPPSGHKKYTGWFRAIVEGQERIHADDVDTGVPVLTLVSSHSYLGEEYSPAADTADTVLDVEQIKHWAPHLAEDTDVEIIDGALHDVFLSGLHARDAAFKACFSWLDTLNSK
>NZ_LT906467.1|WP_038591230.1|1690137_1691241_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MSDVPKIQLLTPKRGMPPKHFADLSKQERIDKLKELGLPKFRADQIARHYYGKFEADPSTMTDLPEAQRQLVKDELFPTLLNPVRTVETDEGDTTKTLWRLHDGILLESVLMRYPDRATLCISSQAGCGMACPFCATGQGGLDRNLSTAEIVDQVRAAAAMMAAEGSRLSNIVFMGMGEPLANYNRLMSAVRQITQPSPDGFGISQRNVTISTVGLAPQIRRLADEGLSVTLAVSLHTPDDELRDSLVPINNRFAVSEVLDAAAYYTDQTGRRVSIEYALIRDINDQDFRADMLGKKLHNALGSRVHVNLIPLNPTPGSKWDASPRERQDEFVRRVIAQGVTCTVRDTKGQEIAAACGQLAADEKTG
>NZ_LT906467.1|WP_084674417.1|1691284_1692148_-|phosphatidate-cytidylyltransferase
MKPPTPKNNAGRNLPVAIATALVLGALVIAALLIGPYAWYPLVAVAVALAMWEVLTRLREVGYQQPRTLLIILGQIMLWASAPYGTAGLVTGFAFTALFLMFYRLFHNGRQRTPENYLRDTAVGIFVLVWIPLFGSFAAMISLIDEGSLPASRFIAAFMLCVVASDVGGYAAGVMFGSHPMAPAISPNKSWEGFAGSVCFGVLTGIAVVHFLIQGPWWMGIILGIALVLCATMGDLVESQFKRELGIKDMSNLLPGHGGLMDRLDGMLPAASATYMLLNAAAIMNPF
>NZ_LT906467.1|WP_038591233.1|1692238_1692796_-|ribosome-recycling-factor
MIDDVLLDAEERMTASVEHTRDELVTIRTGRANPAMFNGVIADFYGAPTPINQMATISVPEPRMLLIKPYDMSTLQEIENAIRNSDLGVNPTDDGQVIRVTVPQLTEERRRDLVKTSKQKGEEGKIAIRNVRRQGMESLKKIQKDGDAGEDEVKTAEQSLDKTTQTYVAQIDELVQRKEDELMEV
>NZ_LT906467.1|WP_038591236.1|1692868_1693978_+|amidase
MQHSAFTHRAHLALPHPGPQPRSRTRLSGWEVPVKDSADVAGWPTTNGNPARAYTATRTDPIVHMILGAGATIPGKTLTSELGATCYAERPGVPVLESPAHPGCTPGGSSTGAAVAVAEGQVRAAHGTDAGGSLRVPAAACGIVGFKPAAPHVAAHGFLTRTVADQCALYGMQPSVPRRMRIGLLLDALLAPANLSPSIASAVEQVASALSRYHEVVRIRPYREAGATFEHFSNRIRHSFTSIDPLDNEYLQWLNAEGSRVTPADMRAAREHIDALPYLLAQQWDVDVVLSPTLSRTPPKLGYFPSLTPEESFYEQTVWSPWCSVFNVTGSMAISVGGIHLGALGGASAPSVSATELLNLAWQVEGLGI
>NZ_LT906467.1|WP_038591239.1|1694098_1694824_-|UMP-kinase
MTDIAPDRNGFKRVMLKLGGEMFGGGKVGIDPDVVESVASQIAEVAKSGTEVAVVIGGGNFFRGAELQKRGLDRARSDYMGMLGTVMNCLALQDFLQQKGVDCRVQTSINMAQIAEPYLPLRAARHLEKGRVVIFGAGMGMPYFSTDTTAAQRALEIGAEVLLMAKGVDGVYDDDPRTNPDAKLLTEVSPREVIEQELKVADATAFSLCMDNNMPILVFNLLKEGNIARAVAGEQIGTLVA
>NZ_LT906467.1|WP_038591245.1|1694976_1695795_-|elongation-factor-Ts
MANYTAADVKKLREMTGSGMMDCKKALEETGGDFDKAVENLRIKGAKDVGKRAERNALEGLVAVSGNTIVEVNAETDFVAKNQEFKDLAAKIADAAAAAKANSAEELANADVDGQTAHEALQVLSAKIGEKLELRRAATVEGANVAKYLHQRSADLPPAVGVLVAYTGDDAEAAHQVALQIAAMKARFLKQEDIPADVVEKERAVQEEITRNEGKPEAAIAKIVEGRMGGFFKDVVLLDQPSLADSKKTVKQFADEHNIEITDFVRFEVGQA
>NZ_LT906467.1|WP_051904881.1|1697267_1697783_+|M23-family-metallopeptidase
MQCLSTPTYSPITATLTTLLLLLITATPALAWVDPTTTAPYASQVLRPAEIPLRNWQPGHRGVDLAAEPGDTIYAAGDGTVHFAGTVAGTPVLSIHHPEGFRTTYQPVRTTLKKGDEVTEGDAIGTLAFTPPNAPNSHLGLHWGALRGKDGYFDPLTLLDPPQIRLKPLDA
>NZ_LT906467.1|WP_038591252.1|1697779_1698673_-|tyrosine-recombinase-XerC
MSDVGTQFLAAAADYTDYARTVQSRSENTVKAYAADLRSLGGYVRTLDEFTLDTLRTWLADAARAGKARTTIARRTATARGFSTWAYKQGLIDADVAARLVTSQVSRPLPTVVNPDRAGALVEAETADDAHPAEALRDRAMLELLYATGMRVGELTGLDVGDLDFDRQVARVTGKGNKQRTVPFGTQASLAVQDWLEQGRDELAGETRALFVGSRGARIDQRQVRRIVERAGQRAGLTDITPHTLRHTAATHTLEGGADLRVVQEMLGHSSLQTTQIYTHVSAQRLRRVYEQAHPRA
>NZ_LT906467.1|WP_038591257.1|1698702_1699875_-|DNA-protecting-protein-DprA
MSALTSWAYLSRVIEGPSTHLQELLRAGRDADEIARGIRHRASWLGPLLRTTERRYDWDRPEEDLEQAHSLGYALLTPEAPGWPGTRIEESFVRGAFASRENMDTPIADAAAPHALWVRGAHDLAQLCEQSVAFVGTRAATAYGHQATQDLVTSIAKHRYTVISGGAIGIDTVAHEAALAARTPTVVVAACGPGVTYPRRNERLFDRIVAAGGSVVSEYPPGVTPDRHRFLTRNRLVAGLSLGSVVVEAAFRSGALNTLKWARYYNRQAMAVPGSILGAGSLGANLAIRNGSATMVLNGEQIHAQLGQLGASEGEEQLELEYAANPVQQLSHNELRIYDATPPHDTQAREAEEIAASAGMSTGLTVHLLMELERRGLVQRNRRVWSRTQT
>NZ_LT906467.1|WP_038591259.1|1699871_1701380_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MALASTQTATVEGVHAHPVTVEANVGPGLPGMHMVGLGDAAVKESRERIRTAVANAALPWPRTKIMVSLSPAHLPKAGSHFDLPVAVAVLGSLDPRAQVRLRSTMLLGELALDATLRRVEAILPMLLQARQRQNIETIIIPRANQHEAALVGDPRIRLADSLGEVFAFLTGGPELEAVSQEFACAASPSGPDFRDIAGQAHERAAFEVAAAGGHHVMLVGPPGTGKSMLAERLPSILPPLTQHERIECTSLHQAAGISRGEVVANRPFIAPHPSLTKTMLLGGGAHNPAPGAVSQAHHGVLFLDEASEIPARVLDALRIPLEQQEVRLTRGKRTVVFPASFQLIMAANPCPCGQEQEKCRCHPSERARHLANISGPLRDRLDVFCRTTQAAAVLSPEGAESSAIIAERVACARERAAARWGAPLTNAQVASTLLRREHPADEAGMTFLEHRLGHGELTQRGVDKVLKLAWTLADLEAAAVPDIDHVARACELHAPRLEERAA

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Crispr_ID: NZ_LT906467_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_10

1721242-1721477

Orphan

Consensus_repeat	Method
AAACGGAGCTAGCTCCATTTAGA	CRT
AAACGGAGCTAGCTCCATTTAGAAAAACC	PILER-CR

3 spacers

The CRISPR arrays of NZ_LT906467_10

>merge|NZ_LT906467|10|1721242-1721477|CRT,PILER-CR
GAACGGAGCTAGCTCCATATGGAAGAACCGCTGACACACGACCAGGCGTTTTGCACCCGCTGCACACCCAAACGGAGCTAGCTCCATTTAGAGAAACCGGCGACCCGCGACCTGGGGATTTGCCTACATCGCAAGTCAAAACGGAGCTAGCTCCATTTAGACAAGCCACCAACCCGCGACCAGGGCTTTTACAACCGACGAAGACCCAAACGGAGCTAGCTCCATTTAGAAAGACC

>NZ_LT906467|10|1|1721242-1721471|CRT
GAACGGAGCTAGCTCCATATGGA	AGAACCGCTGACACACGACCAGGCGTTTTGCACCCGCTGCACACCC
AAACGGAGCTAGCTCCATTTAGA	GAAACCGGCGACCCGCGACCTGGGGATTTGCCTACATCGCAAGTCA
AAACGGAGCTAGCTCCATTTAGA	CAAGCCACCAACCCGCGACCAGGGCTTTTACAACCGACGAAGACCC
AAACGGAGCTAGCTCCATTTAGA

>NZ_LT906467|10|3|1721243-1721477|PILER-CR
AACGGAGCTAGCTCCATATGGAAGAACCG	CTGACACACGACCAGGCGTTTTGCACCCGCTGCACACCCA
AACGGAGCTAGCTCCATTTAGAGAAACCG	GCGACCCGCGACCTGGGGATTTGCCTACATCGCAAGTCAA
AACGGAGCTAGCTCCATTTAGACAAGCCA	CCAACCCGCGACCAGGGCTTTTACAACCGACGAAGACCCAAACGGA
GCTAGCTCCATTTAGAAAGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038591317.1\|1732657_1733056_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_095066773.1\|1708310_1713650_-\|putative-Ig-domain-containing-protein	unknown	unknown	gnl\|CDD\|131384
NZ_LT906467.1\|WP_038591273.1\|1704188_1706483_-\|RNA-binding-transcriptional-accessory-protein	unknown	unknown	gnl\|CDD\|225094
NZ_LT906467.1\|WP_038591285.1\|1717651_1719280_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_LT906467.1\|WP_038591303.1\|1727772_1728546_-\|ribonuclease-III	unknown	unknown	gnl\|CDD\|234633
NZ_LT906467.1\|WP_038591297.1\|1725364_1726867_-\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_LT906467.1\|WP_038594490.1\|1702821_1703511_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_LT906467.1\|WP_038591300.1\|1726950_1727772_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_LT906467.1\|WP_038591282.1\|1714327_1714843_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|184724
NZ_LT906467.1\|WP_051904882.1\|1731512_1732661_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_LT906467.1\|WP_038591270.1\|1703724_1704072_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_LT906467.1\|WP_038591309.1\|1729120_1729921_-\|DivIVA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226127
NZ_LT906467.1\|WP_084674304.1\|1715271_1717569_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_LT906467.1\|WP_038591291.1\|1721560_1725004_-\|chromosome-segregation-protein-SMC	unknown	unknown	gnl\|CDD\|274008
NZ_LT906467.1\|WP_038591294.1\|1725042_1725345_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|237712
NZ_LT906467.1\|WP_038591276.1\|1707680_1708181_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_LT906467.1\|WP_038591313.1\|1730006_1731353_-\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
NZ_LT906467.1\|WP_038591288.1\|1719388_1721140_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_LT906467.1\|WP_038594492.1\|1706479_1707670_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_LT906467.1\|WP_038591306.1\|1728542_1729079_-\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|224317

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_095066773.1\|1708310_1713650_-\|putative-Ig-domain-containing-protein	gnl\|CDD\|131384	TIGR02331, surface_protein_R28, Rib/alpha/Esp surface antigen repeat. Sequences in this family are tandem repeats of about 79 amino acids, present in up to 14 copies in a protein and highly identical, even at the DNA level, within each protein. Sequences with these repeats are found in the Rib and alpha surface antigens of group B Streptococcus, Esp of Enterococcus faecalis, and related proteins of Lactobacillus. The repeat lacks Cys residues. Most members of this protein family also have the cell wall anchor motif LPXTG shared by many staphyloccal and streptococcal surface antigens.	5.1814e-07
NZ_LT906467.1\|WP_038591273.1\|1704188_1706483_-\|RNA-binding-transcriptional-accessory-protein	gnl\|CDD\|225094	COG2183, Tex, Transcriptional accessory protein [Transcription].	0
NZ_LT906467.1\|WP_038591285.1\|1717651_1719280_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_LT906467.1\|WP_038591303.1\|1727772_1728546_-\|ribonuclease-III	gnl\|CDD\|234633	PRK00102, rnc, ribonuclease III; Reviewed.	3.67454e-99
NZ_LT906467.1\|WP_038591297.1\|1725364_1726867_-\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_LT906467.1\|WP_038594490.1\|1702821_1703511_-\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	1.86611e-38
NZ_LT906467.1\|WP_038591300.1\|1726950_1727772_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	5.06245e-124
NZ_LT906467.1\|WP_038591282.1\|1714327_1714843_-\|30S-ribosomal-protein-S16	gnl\|CDD\|184724	PRK14520, rpsP, 30S ribosomal protein S16; Provisional.	9.38686e-72
NZ_LT906467.1\|WP_051904882.1\|1731512_1732661_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	5.1578e-108
NZ_LT906467.1\|WP_038591270.1\|1703724_1704072_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	9.46792e-67
NZ_LT906467.1\|WP_038591309.1\|1729120_1729921_-\|DivIVA-domain-containing-protein	gnl\|CDD\|226127	COG3599, DivIVA, Cell division initiation protein [Cell division and chromosome partitioning].	3.48649e-14
NZ_LT906467.1\|WP_084674304.1\|1715271_1717569_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	7.41161e-60
NZ_LT906467.1\|WP_038591291.1\|1721560_1725004_-\|chromosome-segregation-protein-SMC	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	0
NZ_LT906467.1\|WP_038591294.1\|1725042_1725345_-\|acylphosphatase	gnl\|CDD\|237712	PRK14422, PRK14422, acylphosphatase; Provisional.	4.91839e-38
NZ_LT906467.1\|WP_038591276.1\|1707680_1708181_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	3.92004e-53
NZ_LT906467.1\|WP_038591313.1\|1730006_1731353_-\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
NZ_LT906467.1\|WP_038591288.1\|1719388_1721140_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	2.10169e-153
NZ_LT906467.1\|WP_038594492.1\|1706479_1707670_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	2.66188e-120
NZ_LT906467.1\|WP_038591306.1\|1728542_1729079_-\|DUF177-domain-containing-protein	gnl\|CDD\|224317	COG1399, COG1399, Predicted metal-binding, possibly nucleic acid-binding protein [General function prediction only].	2.53756e-26

>NZ_LT906467.1|WP_038591288.1|1719388_1721140_-|signal-recognition-particle-docking-protein-FtsY
MNSPLLWIVVAIVVVALIVLGIVVVGRKRKEEKTVSFAKTEEPKELTQQEKSGNYQAKGGFNFAPAAAPSTPEKEPVRIDEPREPKPAQEQQAAAAAPEPVVEPDPSAVEEAAKVEDAAKVEKTAKVEKPAKVEDAAKVEEAAKVERTPEPPTEKPADEVVLNTDAETDPETRETVVTPDEAAPVEKPAAELEPEPEPETPAEEPAAEPTPEPEAEPAEEPQADEGQTRQAQEAAAAAAAAAASAETARAQDSQAAEVSEDVVVEKHDEPTEDIEEIEPAAGRIGKLRGRLSRSQNAIGQGLLGILTAGDLDEDAWEEIEDTLIMADLGANLTMRVTETLRGKIAERGVSTEEEARAMLRETLIEAARPEMDRSIKAMPNEGKPAVILVAGVNGTGKTTTTGKLARVLVSMGHSVVLGAADTFRAAAADQLETWGRRVGASTVRGKEGADPASVAFDAVATGVQEGADVVLIDTAGRLHTSTDLMDQLGKVKRVVEKKSNVDEVLLVLDATVGQNGIAQARVFREVVDITGVVLTKLDGTAKGGIVFQVQEELGVPVKLVGLGEGADDLAPFEVESFVDALLG
>NZ_LT906467.1|WP_038591285.1|1717651_1719280_-|signal-recognition-particle-protein
MFESLSDRLQDALGGLRGKGKLTEADINATAREIRIALLEADVSLAVVKAFIKRVKERALGADVSEALNPAQQVIKIVDEELTGILGGETRRLNLAKNPPTVIMLAGLQGAGKTTLAGKLSKHLAKQGHTPLLVACDLQRPGAVQQLQIVGERAGVDTFAPDPGTSIDSYEHEMGSSHGDPVAVAQQGIEHAKQTKHDVVIIDTAGRLGIDETLMTQARNIRDAVNPDEVLFVIDAMIGQDAVSTAQAFADGVDFTGVVLTKLDGDARGGAALSIREVTGKPILFASTGEKLDDFDVFHPDRMSSRILGMGDLLSLIEQAEQTYNEKDAEAAASKLASGELTLDDFLDQLLMIRRMGPIGNLLKMMPGGKQMNQMADMVDEKQLDRIQAIIRGMTPAEREDPKILNASRRKRIAAGSGVEVSDVNQLVERFFEAKKMMGKMAGQFGMGSMPGMPGMPGGRSATKKKPKGRRGKNGKRKPPKRRSGGGMPGMPGMPPMPGMGGGMPDMKELKKLQEQMPPGMEGLDLDKLDFNEAMKRMGKGK
>NZ_LT906467.1|WP_084674304.1|1715271_1717569_+|acyltransferase
MSATTTKPAQHDAGESTRARTSSYRVDIDGLRGYAIGLVVLFHVFVGRVSGGVDVFLLLSGYFFLGGQLRYAMRPNPSLNPWWPLWRTIRRLVPALVVVILSVFVAVHYLTPELMSDELTAQFTASMLYYQNWELMVQAADYAAASQDTSPLQHLWSMAVQGQFYLFGILLGTLIAFLITKCNLPRTYAKRGAIAVLAIITVASLAWASRFGFIGTGANYYSTFSRAWELSLGALLAFVPTSRFLPQKTAWLTSAIGIICITITGAVVSNTLAFPGPIALLPLLGAALVILSGDDNPVSKVLASKPMTWLGGIAYSLYLWHWPMLIIVTVIGGFGTPPAWVGVIVIAASLALAHVTHVLLEQPLRQHRKRPKATDTPVRDARRSLRTPQGIGRAIGGVLIAALVGAALTIQPLWNQRVENANRPLDINMYPGAMSVVGAPVPDVTPQPDPNLVSGIYPPIGSEGCMVFQNEEADVMPRPDCIYGDKDAETTVVMVGGSHIEPYVIPLDRLGREHGFKVVPFVRQTCPLTIGGEDGTELVSDVCFEWSQNVFEEVVNMQPDLVVSTSTRPEGRAGDVEVTVDHVPDSYLVLWDAFAQYDIPFLGFRDNPWIFDIFGQIMDPNICIVSGFTEEECSMRTDDVYGPVDPAAEYLDGTNKQFSVDTAPWFCDAELCRPQIGNVYVYRDQNHISNAYMATLTPLVWQELRKVFDALEVPYVGTDAPEYEVPPLRPDPNAEVPVGEDGTAPENLPVNPVDGQRQPLGLLGQ
>NZ_LT906467.1|WP_038591282.1|1714327_1714843_-|30S-ribosomal-protein-S16
MAVKIKLQRVGKIRNAQYRVVVADSRTRRDGRVIENIGIYHPKEEPSLIRIDSERAQYWLGVGAQPTEPVAALLKVTGDWQKHKGLDGAEGTLKVAEEKKSKLELFNEALEEANNGPTAEAITEKRKKAKEEEEAKAAAEAEAAAAAEAAEKAESEEAEASEEKAEESEEN
>NZ_LT906467.1|WP_095066773.1|1708310_1713650_-|putative-Ig-domain-containing-protein
MKKSQIIRRRGTSVAAAALSFALVAPFAQPVAVAQDVSAAVSEAGSVNAPAQPASGDKDSYDAIYSPGVVNGKKTVSGTVLFYDQFPGSSNGNTAAKGDFGKALPAAGSGVGENFKGATVYAQWFEKPDKGKSGNNPAVASPVYKTTVNEDGTYAINMRPFIDSDGKYREFHAQYNIAAGGRGQKVKIWVDGYDRDEYEMVRGYGERQVPDGTVADTTGGAGWGSGAAQRSLAGAHQVFVKRANAEQMLGDESEWRKMDDTEVAANGKEGGAFYGKAYWNLNQGLAALGQKEVVGDKNDRRIEGLQVVAAYLSDKAVLEIQKHVEENKGTEYQNHDLRSSSWDVNDELKLQAWINEQIAENPDWIAERVVTETDGNGDYLIQFKGTYGINPNKAGKVDPELAGTVADSFADGVFTNNQISGRANAKHVNWDWLFVDAPNLPTGVSNMGAWRGNVWQGLTSNPWGIADIGGVAGTPYDMRGMQKASLSTNYNVGSWDMALMPNQIHFEVDKYDSLTNFARPGDKTHAFTNGLPGFNLSALYQVEWTDSDGNVVNTCKAVDAEGNLIEDEDSLGMPAKSDGSLPNCEITVPEDLDKVMTYTATLYGIDANGDRIALASDSFTALVKTAAEVSPQYDPTFAEVGTEATTGEPKFVDALSGEPIDPADERLADAHYVLHKDALPEGWVADIDAETGVITVTPGANGIDGEELKPGDTVNLPVRVEYADKTANGAYAPIVIGKQADFFEPKYDNKLVVPGEETKSPPTFTDKNGKGVDVPEGSEFAIPEDFQAPEGYTVDIDPATGEITVTVDGVNKDTAEKFDVPVTVTYKDGSTDEVTAPFYLDTDGDGKPDLDEGIKDEDGNVVVEGDDDDDNDGVSDEDEKNQGTDPKDSNSVPSTIKDIEDKSGTVGEPIDSFKIEVDNVPTDGSVKVDGLPDGVTYDPETGEVSGTPEKAGKSTVTVTVLDKDGNPVKGADGKPVTETFEFDVKDKEVPPTPDTTEDKDKYEPEYKPGSGKPGEDVTVDKPDFKDKDGNPTTAPDGTEFTPGDNAPEGVKVDENTGEITVPVPEGATPGDKITVPVEVTYPDGSKDNVDVTVTVDEPDAKDKDADSFEPEYKPGSGKPGEDVTVDKPDFKDKDGNPTTAPDGTEFTPGDNAPEGVKVDENTGEITVPVPEGATPGDKITVPVEVTYPDGSKDNVDVTVTVDEPDAKDKDADSFEPEYKPGSGKPGEDVTVDKPDFKDKDGNPTTAPDGTEFTPGDNAPEGVKVDENTGEITVPVPEGATPGDKITVPVEVTYPDGSKDNVDVTVTVEDPNSDAAKSVPEYGLTPVEAGKTEKADPFKGKSDVPVKEAEGTPSAGSDDWKFKTDKSSGVVEATAPTYDKVGEKIAEKLPEIQSHEAGKRWDEFVKEFTPFAKPSVDVNFEYNDGSKNSDKADFDLVGKDGKSLLTPDGDFDGDGISNRDEIEKGSNPSNANSVPDTQAPTIDPVAPGDREITGKDDRPNTSISVTIPGVDKPIETTTDENGNWKVDVPSDVELNPGDKITVTDEAGNSAEATVEDTKAPSINEIKPGDKTVSGKGDRPNEEITVTFPGGKTVTTTTDENGNWKVNVPSGVELKPGDKVTATDGAGNKATAQVGIDAGKCAATAVGFGLPLIALIPIGLATQMQIPGLSDFVAQANAQIQAANTQIQQQAGLFNPQLAAQVDAVNQQLGKFGADVATVAGGLALIAAGILAGTLIYDNCSPNGASSSVKDLELKGSSGKTYAGSSKDEKPAKQEGSSEKK
>NZ_LT906467.1|WP_038591276.1|1707680_1708181_-|ribosome-maturation-factor-RimM
MELNIGRVVKSHGIKGEVAVEVTTDDPDVHFAVGETLTGKQAGKEVELTVKTMRPHQKRLLVSFEEVPDRTAADSLRSMKFFAEPLEHDAEEDGYYDHELTGLEVRMDGTRIGEVTGVMDTPNRKILEVDYQGREVLIPFVMDIVPEVDLEQGYLTITPPEGLLDV
>NZ_LT906467.1|WP_038594492.1|1706479_1707670_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MRLDVVTIFPEYLEPLRHALLGKAIEQGILEVGVHDLRQWGEGNHKSVDAPPLGGGPGMVMKPEVWGPALDAVAHRDADVETLTTAAAHRNDKVRHDERRGVKARPYEARDVCEGEDPEAPLLLVPTPAGAPFTQSDAQAWSRERHIVVACGRYEGIDQRVFEEATVRYRVREVSIGDYVLIGGEVAALVIAEAVTRLIPGVLGNTQSHEDDSFSDGLLEAPSYTTPRTWRGIAAPEVLTSGDHGKVDKWRRQASLKRTQGVRPDLIAQARQAGELDEDDVFFLDSRPVRTVLDVLIDPQAWPKVRKRMRRALAKAGYRVEDATLTERKGAVCFEPSMLEQAYEREHGRPPNVPLCELEITGRTTLSNAEATEAVVAALPWGTQWVGATRPVESQQ
>NZ_LT906467.1|WP_038591273.1|1704188_1706483_-|RNA-binding-transcriptional-accessory-protein
MTSLAATIATELNVQPHQVEAALKLLAEGNTVPFISRYRKEATGGLDDAQLRHIEERHTYLVELEERKQTVIEAIEEQGKLNDELKRQILDAETKARVEDLYLPYKKRRKTKADIAREAGLEPLLDQLISAPCTDPETLAQDFLCEGFAETKAALDGARAILVDRFATDADLVGEVRERLYTTGTMRSAVVEGKEAEGAKFKDYFEYNEPFESLPSHRILALLRGENEGVLTLDLDAGDESVYQGMIAERFELPVEDSEWLAKAVKWGWRTKLQVSANLDTRVRLKEKAEEGALEVFKTNLRDVLLAAPAGQRATLALDPGYRNGVKCAVIDGTGKVLDTTIVYPHQPQNQWQQAVQTLSSLCAQHAVELIAVGNGTASRESEKLAGEVADLIAEAGGARPTPVVVSESGASVYSASEIAAEEFPDMDVSLRSAVSIARRLQDPLAELVKVDPKSIGVGQYQHDVNQAALARTLDAVVEDAVNSVGVDVNTASAPLLERVAGVSATIAKNIVAYRDEHGSFASRKELGKVPRLGPKAFEQSAGFLRIQGAADPLDASAVHPEAYPVVNRIAASTGLDTKGLIGNSAVLTKLRPADFADETFGVPTVTDIIAELDKPGRDPRPEFKTATFKEGVNKVSDLTPGMILEGTVTNVAAFGAFVDVGVHQDGLVHVSAMSHKFVNDPHDVVRSGEVVKVKVMDVDVERQRIGLSLRLDDEPGQEPKRGGGKPAQSRGGKRRGGGRRGVDKQKAPGGSMADALKRAGFGK
>NZ_LT906467.1|WP_038591270.1|1703724_1704072_-|50S-ribosomal-protein-L19
MSNGIIDLVDAGQLRDDIPDFRPGDTLDVHVKVIEGSVTRTQVFTGFVVRRQGGGIRETFTVRKVSFGIDVERTFPVHSPNIEKIEVVRKGDVRRAKLYYMRDLRGKAARIKERR
>NZ_LT906467.1|WP_038594490.1|1702821_1703511_-|signal-peptidase-I
MPWYVEIPMVIVLTLVFIFLIQTFIGRLYVIPSGSMEPTLHGEDGSGDRIFVEKITYAFNDPKPGDVIVFKGTDSWNTGFSTNRSDNTFVRGLQEAGSWVGLVPKDENTLVKRIIAEGGQTVSCQEGDSAVMVDGAPINQDYMMQPSYYPVDPTTGSDACGGPYFGPVEVPEDHYFMMGDNRTNSADSRYHLGDGLEGTIPRENIRGKVLGIVFPLNRFGGVESPDILQ
>NZ_LT906467.1|WP_038591291.1|1721560_1725004_-|chromosome-segregation-protein-SMC
MHLKSLTLKGFKSFASATTMKFEPGICAVVGPNGSGKSNVVDALAWVMGEQGAKNLRGGKMQDVIFAGAGDRKPLGRAEVTLTFDNSDKHLPIEYTEVAITRRMFRDGASEYEINGAKARLMDIQELLSDSGIGREMHIIVGQGKLSEILESRPEERRAFIEEAAGVLKHRRRKEKAQRKLTGMQANLDRLSDLTEELGKQLKPLARQAEAAKRAATVQSTLREARLSLAGHQVVTLRASLADATAAAQALAEQVETATAVLEEAEQTQAEIEYEQEEAQPQAEQAQKVWFELSTLAERVSATVRIATERAQHSGSQVPYAGQDPDQLLRRAEFADEEYAEALEAAEEAAEKLETLREEVAEKQEAFDDAEREHMAQVRAIADRREGVVRLLAQEESQQAAIIAAEEEVARLTELLEETRARARAAEQEAREAAEALTEVDTQRAPLDEEHVRAYTESDAADKRLEQLRAEQRERERAVFTLESRIATLVEQAPRPQAADALVDFAPLAGLLRAEEGMDRALAAALGAHAEALTGEVNTAAVDQLADAARTIVIDTNGGASWRLETDAKVDWLLDHVRVDDSVLGPVTRLLVDVAVAETLEAARELVAEDPRLRAVTHDGVLVGEGWVAAGTGTTTAVEVTAQIEQARGELEVAQAQLEELSGTLEGAKIAAEDARVTAASAKAALREHDAEAQRLSRDHERLEKQWQANSGEHERAAQRATEAEGRLAARREELAQTRDRLARVNAEDQPSEEPSSAQRDAAQQELAQVKAMEMEATLASRTAQQEAEQRAGRGDALRRQAEHEKHAKARHDAAMQKRRAQAELAQAVAEQGRDVAARVQDALARAGAERDRWQAGVAKLQAQLQQARSQVSAARQTLKRLTESSHNSEIAQSQAQVRIDEAEKKITESLGIAITDLLRDYTPGEDFDQASEKARLAQAEKDLRALGKVNPLALEEFKALEERYAFLSTQLDDVIQAREDLIGVINDVDGQILQLFTDAWKDVEAEFPRVFHTLFPGGEARLILTEPDDMLATGIEIEARPPGKKVKRLSLLSGGEKSLTALAFLVAIFRARPSPFYVLDEVEAALDDVNLRRLIALLKELREDSQLIVITHQKPTMDVANVLYGVTMRGDGVTRVLSQRMQPAAD
>NZ_LT906467.1|WP_038591294.1|1725042_1725345_-|acylphosphatase
MTEHTDNTRVRLTAHVHGHVQGVGFRWWTRSRALELGLNGYAKNLADGRVEVVAEGTREQTDALLALLREEQTTTRRPGRVDFVGAQYGEPRGASGFDER
>NZ_LT906467.1|WP_038591297.1|1725364_1726867_-|alanine:cation-symporter-family-protein
MDSATSFVNDTLNGVIWEIVPWLLLAAGVYFGLRTIFVQVRLLPEMFKAVTEKPQGKDRHGRDLDEEYGGISAFKAFTISAASRVGTGNIAGVALAISVGGPGAVFWMWIIAIVGGATAFVESTLAQLWKTKDQDGNYHGGPAYYMTRGLNWRPLAIIFAVALSLTYGFVFNAIQTNSIVEAVGGSLQTDSMTLKVIVAAVLATLTALIIFGGVTRIASATQIIVPFMATAYILIGLVVVIMNISEVPGMISLIVGHALGLQQVAGATVGAAFAFGMRRGLFSNEAGQGSAPNAAATATVSHPVKQGLVQTLGVYFDTLVVCTITAFIVLLGPAVNYGMDDIQGAALTQSALADSVGAWGAHAITFILFFLAFSSVIGNYYLAQANVEYLTSSKTVMTIFRLGVIGFVIFGAFGSLPLVWALGDTMAGTMAIINIIAIVPLGGVAFKLLRNFSEQRTKGLDPVFHRDMLPELKNVEFWDGSDPVTRRSVEDLKVAGRPDK
>NZ_LT906467.1|WP_038591300.1|1726950_1727772_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVEVVRRGLETHLVGRTFDTVDVLHPRAVRGNTEDLAQLLPGKRITGTGRRGKYLWLTLDDGAALVVHLRMSGQMLVGPPGGVQSPHVRIRALLGEVQLDFVDQRTFGMWQYAPFDGEVPAPVAHIARDPFDPHFDLTATARVMRTRRSALKTVLLNQELVSGIGSIYADEAMWAARVKPWRTARALRQRDAVSVLVHARAVMERALAEGGTSFDSLYVNVNGASGYFSRSLNAYGQAGTPCARCGTEIAKRVVGGRSCYFCPVCQVL
>NZ_LT906467.1|WP_038591303.1|1727772_1728546_-|ribonuclease-III
MSRSKKKRISNEQAWQEAFTAVDHQPLLDRIGVQLGERELRHALTHRSFANEHGTLPNNERLEFLGDAVLGLTVATKLFQLYPSRPESDLSPMRASIVSRYGLADVAREINLGEHVLLGRGEELGGGRDKDSILADTTEALLGAIYLAHGFERARDVILELFDEKLRGATASSAHRDWKTSLQERLAELGAQVADYSSTSTGPDHQKLFTCEVVSGDTLLGSGRGTAKKLAEQEAARAAMRFLHDHPERVAGNAEGL
>NZ_LT906467.1|WP_038591306.1|1728542_1729079_-|DUF177-domain-containing-protein
MATNPFIINVAEALHGDGMPVTVHRTGESPSRIGPEMIAIPQGQPVELEATITPLGAGVLVDASVTAQLEGQCVRCLKTLTPTRTLSISQVFEAEDGFIVGDEETDEDKGSGDEIRRIENETVDVEQAFVDEAGLTLPFNPVCEPECAGDTDVPAPDGVSGEENNLVDPRWADLEKFL
>NZ_LT906467.1|WP_038591309.1|1729120_1729921_-|DivIVA-domain-containing-protein
MYRVFEALDELVETVEAAMGVPMTSNCMVPRSEMLTLLDDIREALPDEIDDAQDVLDNQDEILRGAEDRADQLVGDAEAEAKQLVDDAHAQADSVLHDAQAQATALLSRSEEDADRMVADAREEADTALNAAHSEAERLVEDGKQQYQRSVDEGLAQQEHLISESEVMRRADEEAHRLVENAHSESSRLRRECDEYVDSKLAEFEDALSSVLRTVASDRSALRRGAGVAGAAGESGGRRNERQEQTGHYEPRRYPRRSRGEQRDQY
>NZ_LT906467.1|WP_038591313.1|1730006_1731353_-|NADP-specific-glutamate-dehydrogenase
MSSIEQEVAGYYDKLLQRNAGEPEFHQAVAEVLDSLKIVLGKDPHYADYGLIERLCEPERQIIFRVPWMDDNNQIRVNRGFRVQFNSALGPYKGGLRFHPSVNLGIIKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGRSEGEIMRFCQSFMTELWRHIGEYRDVPAGDIGVGGREIGFLFGQYRRLANQHESGVLTGKGLTWGGSLVRTEATGYGCVYFTEEMMKAKGESLDGANVIVSGSGNVAIYAIQKAQELGATVVGFSDSSGWVNTPNGVDVELLHDIKEVRRARVSDYAKEAEGATYHEDGSIWDLKADVALPCATQNELHGEHAKTLVSNGVKYVAEGANMPSTAEAIEVFRENKVSFGPGKAANAGGVATSALEMQQNASRDSWTFDYTDGRLHQIMSGIFNVTASTAEEYDRAGDYVVGANIAGFKKVADAMLAQGVV
>NZ_LT906467.1|WP_051904882.1|1731512_1732661_+|glycerate-kinase
MSLITQGTEGAEAPSPRILIAPDSFKGTATAQQAAEWLGEGVRSIIRDAEINLLPMADGGEGTSSLFQGEQITLPTTDAAGRLTEATYTYDAETTTAFIDVAAASGLPAVADRPVPMTGDTYGTGVLIADAETRGATRIVLGLGGSATIDGGTGILVALGANPLDEHGYQLTPGGGSLHKLGDFDTAKVNIPAGSLEWHLLFDVTSPATGPQGAPAVFGPQKGATEEDVAVLDAGLARLCEFAGIDPATPGMGAAGGVAIGITWLSSLLHGTADHVHLQPGARMVAEANGLAGKLGEASLVITGEGRFDAQTATGKVVATVCDLAREIGEQAPTVAVVAGSFDGEPDEGVLAVELEEVVDTREQLIRAGKQAAVAYLNAGAR
>NZ_LT906467.1|WP_038591317.1|1732657_1733056_-|hypothetical-protein
MPRIQFDVLVPPVHAGKLAEALQRALDILVHRGKLSSASLEAQGPVLLDAHVTAEFARTYESDRGFTADEEGAEVHRYLIDAEGVDSYNRLAMGLSRILTPKADLPRDPVALEQQDRFELPALFPWTVTILR

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Crispr_ID: NZ_LT906467_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_11

1960716-1960799

Orphan

Consensus_repeat	Method
TTCTCCGGCGGCGGTGGCGGCGGC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_LT906467_11

>merge|NZ_LT906467|11|1960716-1960799|CRISPRCasFinder
ATCTTCTCCGGCGGCGGTGGCGGCGGCCACCGCGGTGGTGGCGGCTTCGGCGGCGGAGGGTTCTCCGGCGGCGGTGGCGGTGGC

>NZ_LT906467|11|9|1960716-1960799|CRISPRCasFinder
ATCTTCTCCGGCGGCGGTGGCGGC	GGCCACCGCGGTGGTGGCGGCTTCGGCGGCGGAGGG
TTCTCCGGCGGCGGTGGCGGTGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_084674323.1\|1963645_1964290_+\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_LT906467.1\|WP_084674324.1\|1966155_1967130_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_LT906467.1\|WP_038591854.1\|1964201_1964648_+\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_LT906467.1\|WP_038591842.1\|1956363_1956627_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038591848.1\|1961484_1961991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_157727811.1\|1960910_1961075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038591851.1\|1961990_1963373_-\|glycine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235240
NZ_LT906467.1\|WP_038594579.1\|1956620_1957547_+\|ArsA-family-ATPase	unknown	unknown	gnl\|CDD\|223082
NZ_LT906467.1\|WP_038591845.1\|1957552_1958857_-\|deoxyguanosinetriphosphate-triphosphohydrolase	unknown	unknown	gnl\|CDD\|235098
NZ_LT906467.1\|WP_084674322.1\|1952018_1952390_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226740
NZ_LT906467.1\|WP_169713238.1\|1952661_1953156_-\|excalibur-calcium-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|214891
NZ_LT906467.1\|WP_038591861.1\|1965404_1966166_-\|DNA-repair-protein-RecO	unknown	unknown	gnl\|CDD\|234622
NZ_LT906467.1\|WP_038591857.1\|1964650_1965397_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|237826
NZ_LT906467.1\|WP_051904910.1\|1961071_1961488_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_144311837.1\|1952382_1952646_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038591839.1\|1954685_1956380_+\|carbon-starvation-protein-A	unknown	unknown	gnl\|CDD\|224877
NZ_LT906467.1\|WP_038591835.1\|1953649_1954513_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038591830.1\|1950102_1951995_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_LT906467.1\|WP_038591827.1\|1949542_1950016_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_051904912.1\|1967172_1968312_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_084674324.1\|1966155_1967130_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	5.12021e-142
NZ_LT906467.1\|WP_038591854.1\|1964201_1964648_+\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.94287e-39
NZ_LT906467.1\|WP_038591830.1\|1950102_1951995_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_LT906467.1\|WP_038591861.1\|1965404_1966166_-\|DNA-repair-protein-RecO	gnl\|CDD\|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	1.02029e-73
NZ_LT906467.1\|WP_084674323.1\|1963645_1964290_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	4.54709e-16
NZ_LT906467.1\|WP_038594579.1\|1956620_1957547_+\|ArsA-family-ATPase	gnl\|CDD\|223082	COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning].	1.05452e-66
NZ_LT906467.1\|WP_038591845.1\|1957552_1958857_-\|deoxyguanosinetriphosphate-triphosphohydrolase	gnl\|CDD\|235098	PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional.	0
NZ_LT906467.1\|WP_169713238.1\|1952661_1953156_-\|excalibur-calcium-binding-domain-containing-protein	gnl\|CDD\|214891	smart00894, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	7.56526e-15
NZ_LT906467.1\|WP_038591857.1\|1964650_1965397_-\|isoprenyl-transferase	gnl\|CDD\|237826	PRK14829, PRK14829, undecaprenyl pyrophosphate synthase; Provisional.	1.46593e-147
NZ_LT906467.1\|WP_038591839.1\|1954685_1956380_+\|carbon-starvation-protein-A	gnl\|CDD\|224877	COG1966, CstA, Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms].	6.2353e-141
NZ_LT906467.1\|WP_084674322.1\|1952018_1952390_+\|hypothetical-protein	gnl\|CDD\|226740	COG4290, COG4290, Guanyl-specific ribonuclease Sa [Nucleotide transport and metabolism].	3.3423e-41
NZ_LT906467.1\|WP_038591851.1\|1961990_1963373_-\|glycine--tRNA-ligase	gnl\|CDD\|235240	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional.	0
NZ_LT906467.1\|WP_051904912.1\|1967172_1968312_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	0.000750899

>NZ_LT906467.1|WP_038591845.1|1957552_1958857_-|deoxyguanosinetriphosphate-triphosphohydrolase
MPTSVTVTLDVVYTYNSDDVARRVPEAAKQAQLSPAHETRDAFERDRARVLHSAALRRLADKTQVVGPRDGDTPRTRLTHSLEVAQIARGIGAGLGLHPDLCEMAGLTHDIGHPPYGHNGENALNACAPCGFEGNAQTLRILTRLEPKVLIDATSYGLNLTRASLDAAVKYPRTRTNADGTVNRKYSAYDEDADVLAWARAGHTDSRPPMEAQVMDFADDIAYSVHDVEDGIVSGRVSLKVLWDFVELAALAEKGAAAFGGTADSLIDAADRLRSLPAIAAAADFDFTLQSWTGLKALTSQLVGRYVGGVTQATLADEANQALSTGLGRQHGDLVIPPDVEAEVRLLKTVAVLYVMDIPAHLARQDRQRERIFRVHEYLRAGAPGTLDTIFRTWFEAAETDTERERVIVDQIASMTESRLERLAKKAAAFDGFF
>NZ_LT906467.1|WP_038594579.1|1956620_1957547_+|ArsA-family-ATPase
MLDAPVMFFGGKGGVGKTTVSAASAVRLAARGRRVLLVSTDPAHNLGHIWSQSLLDAPLTLEDHLDAIELDPAAITAQHLRAVGDSMRAMMPERLHKEVDKHLEMSRHSPGMHEAALLERIADLVGASDYDHLIFDTAPSGHTSRLMALPELMAAYTDGLLARRDKSDKFSELVRGMGGDSGGGSPVDRRNQQIRSTLLKRRKKFEHLRSVLTDPAQCVFHIVLTAERLPVMESMEFYEELSSHGVHVGGAVVNRRTPDEAGEFLAQRRRVEDDALALLDLPVPVHELPWLPGEIGTRAALEQIAALL
>NZ_LT906467.1|WP_038591842.1|1956363_1956627_+|hypothetical-protein
MSLRTKLAAFGAGLNEFYQAPYRREFARAAREEDDLFTLLVASEMLGIPNPASSYTLELLPLLYDDFHAWHTRMGMERSPLDGISCC
>NZ_LT906467.1|WP_038591839.1|1954685_1956380_+|carbon-starvation-protein-A
MNSLFLVFIGLAMLSSGYLLYSKFLGRRVYQLSDSYETPAHTMEDGVDYVPTNKYVLWGHHFTSVAGAAPIIGPAVAVIWGWLPAFLWVTLGTVFFAGLHDLGALWASQRHKGQSIGTLSGRYIGARGRNLFLVVIFLLLLMVNTAFAVVISNLLISTPSAVIPTWGAILVALLIGQAIYRLKWNLPLVSVVGVVALYALMVLGDRVPVTLPETVLGIPDRGIWILLLFTYAFIASMLPVWVLLQPRDYINGLQLFVGLIILYASFLVVRPEIVAPTLNSAVPEGTPSIFPLLFVTIACGAISGFHGIVASGTSAKQLDKETDARFVGYFGAVGEGLLSLGTIIATTAGYKTLTDWENVYNEWNAGGVNAFVEGGGALMNQGLGIPTSLSATILATMAVLFAATTMDSGIRLQRMVVGEIAEIMGVKLSGLVATIIAVGAALGLTFSTGLDGSGGMIIWPLFGTTNQLMAGLTLSILVVILTKLRRPTLPLLIPLTFVTLMSLWAAILQLGTLFAAGNWLLLAIDVVIIICAIWVIVEAITAISKARREPAMEWEDSPVHEPAH
>NZ_LT906467.1|WP_038591835.1|1953649_1954513_-|hypothetical-protein
MRRFLVPVIVATGLVVPATSASAADLAPKDEKTCSVVTTAAEREFAKTYADEEKDLGGKLLVGKWVSAIERVYPGAETYTDVELLAKLMPESLAQHYLDVRDSASSADIPFGPTGDEIAELTHIAVAEGESRPTYADPQASARDRAHAQSLTSALQRHFPGLKTKEAESLAAVIQNDRTGEYFNTRLAYEHVLAQAAWDCRDLMASDAKLAHIDLPTSTPPQQDPAPGSSQPEQGRASSAGATAGVVVFSLLAALGVSLALLATVGPQFGLALPELPDLSNLANLQL
>NZ_LT906467.1|WP_169713238.1|1952661_1953156_-|excalibur-calcium-binding-domain-containing-protein
MPVEETPAPTEPVASTTTSSSATSTTRSSAALSTTQNTEAEASRASAAAASRSAEAAAREAAEREAAEREAAERARAEEAARLQREAEEAERARIAEQQRLEQEQQHQFVAPARAPEPAPAAAYYKNCTAVWNAIGSPIYAGQPGYDSHLDRDGDGIGCERDPR
>NZ_LT906467.1|WP_144311837.1|1952382_1952646_+|hypothetical-protein
MYRTGHGRSRNPVLLTAPVGSVADVCAALSVAVFGPKRPAPKNLDGLADLLREAHPARVVACDWQLPADETRKVVAVFRDNRVELVR
>NZ_LT906467.1|WP_084674322.1|1952018_1952390_+|hypothetical-protein
MRGVKKLVVALAGLCSACAFVDAPVDATAIPACGNLPTEARDTIGLVEHGGPYPYPDNDDARFGNYEGVLPEEELGYYREYTVDTPGVSHRGARRIVTGGEGDPEVWYYTDDHYESFCEVTDV
>NZ_LT906467.1|WP_038591830.1|1950102_1951995_-|DNA-primase
MARGRIPESDIEAIRERAAIEEIVGEYVQLKPAGHDSMKGLSPFKDEKTPSFHVRPARGYYHCFSTGKGGDVFNFLMELEQLTFPEAVEAVADTIGYHINYQGGSTGARDVKPGTRKRLLAANKAAHEFYREQLETPEAEPGRNFLLERGFDKELIYRFECGYAPDGWDTLTKHLLRRGFEVQELIAAGISSMGRRGPIDKFRRRLIWPIKDAAGNTIGFGARKLFDDDPMGKYMNTQDTLLYHKSKVLFGLDLAKRNISERHQTVIVEGYTDVMAMHAAGVTTAVASCGTAFGAEHLAAIRRHMLDDSYFRGELIYTFDGDEAGQKAAMRAFEGDQQFTGQSFVAVAPEGMDPCDLRLAQGDAALRDLVARRVPMFEFVIESLLKDYSLDSAEGRVQALRRTVPVVAAIEDQVLQKEYARRLAGWVGWPNPDEVLDQVRAEAKRPKKDQRRVAIKREAESAAPGQPPALQPPNPQDPILWPQREALKVALQYPDKAGSYFEGINPDAFTNDAYRQVREAIGNAGGLAAAAEHGPNFLAAVAGEMRDLAGRNFVSELAVEPIHADDIDRYVDSVLSRLQETRVGDQIAQLKSQLERMRPSEEPEAYNALFSDLVALEQARRELNDRASRA
>NZ_LT906467.1|WP_038591827.1|1949542_1950016_-|hypothetical-protein
MTKNTHAARIAALSAALALSATSVVGTGTALADSFDGPDWTGGYYVPEKDYPYDPGYASYWRSYKVIKFGDPKFFDYGTQGVRVVGNYPSDRILCVANKGGQQECYVKDQKITEFSGYPRTITTDSKIAPFAPVIGFFLALGYKFNNLGTVGGGLSS
>NZ_LT906467.1|WP_157727811.1|1960910_1961075_+|hypothetical-protein
MRSLLSHKLTGTEISELESLARCSASPTIRDLLREIARAARQGEDVVAADRRGN
>NZ_LT906467.1|WP_051904910.1|1961071_1961488_-|hypothetical-protein
MIWRAHTLYRGQEALADVAVADGGDVLRYGCHELRFRSMNPARLRAVSAGGEEFVLRKRSLTVSRYTAHCADRDYTLSRVGVRGCREIRDAAGQLCAVTTPKHDGSLEVELHAALTLDLVFITWALTYVDAAVRRTYY
>NZ_LT906467.1|WP_038591848.1|1961484_1961991_-|hypothetical-protein
MHYVSWDRTDRDNLKLLAEAGPEVLGVFTHERANVGGEQWDLVVSPESGAVATRDGVEIVRAHDSLKRSRQIAVEVEGRRYEFVGETSQNWIVDDANGTKVAQFTSDHNGVRKAILEFEGETSLPLIDVASLAWISREILEARKLVSSNVLIATLLLFSLVAVLVFVL
>NZ_LT906467.1|WP_038591851.1|1961990_1963373_-|glycine--tRNA-ligase
MAASKIDTVVNLCKRRGLVFPAGEIYGGTRSAWDYGPLGVELKENIKRQWWRHMVTSRPDTVGVDTSIILPRQVWEASGHVEVFTDPLVESLHTNKRYRADHLLEAYEEKHGHPPANGLADINDPETGQPGNWTEPKEFSGLMKTYLGPVDDKEGLHYMRPETAQGIFVNFKNVMTSARLKPPFGIANIGKSFRNEITPGNFIFRTREFEQMEMEFFVKPGEDEKWHQYWIDNRYDWYVDLGINPDNLRLYEHPQEKLSHYSKRTVDIEYAYEFAGSKWGELEGVANRTDYDLKTHAEASGEDLSYYDQQNEERWIPYCIEPAAGLGRAMMAFLIDAYHEEEAPNAKGGTDTRVVLKLDRRLAPVKVAVLPLSKKPELAEPAQELATKLRQHWNVDFDTSGAIGRRYRRQDETGTPFCVTYDFDSLEDGAVTVRERDTMEQERVKIDELEAYLAARLIGC
>NZ_LT906467.1|WP_084674323.1|1963645_1964290_+|winged-helix-turn-helix-transcriptional-regulator
MYSPDHPAPNLDLTAGLISALDSRTRIEILLLLAERNHVVREIVEKLGRSQPSISQHLKVLKSLRLVAAFRRGREIIYSLPRMEIIDVIYALGKVAEDTLPDPSEERKRAKKSRKPKKPQRTQKAQQTRTSQQPHDERKHEPPTNAPPRPVYISSAIPIEEFEKLHRRNNDHGARAFDSRATVDRYGTAATHQQPQRTDPQTRSADDAPADGDC
>NZ_LT906467.1|WP_038591854.1|1964201_1964648_+|transcriptional-repressor
MAQQRRTNNPKEPIPKLGPRMTRQRTAIVETLRDVDKFATAKDIHEELQLRGEKAGLTTVYRTLQSLAEINAVDVLQNSEGETLYRHCLTEHHHHHLVCTKCGRSEEIDGGPIESWAKDTADAFGYKLLAHDAEIYGVCAPCTEKGGE
>NZ_LT906467.1|WP_038591857.1|1964650_1965397_-|isoprenyl-transferase
MTSRQIDPEFIPRHIALVMDGNGRWAQQRGLKRTEGHKQGEAVLMDCVDACIELGTVKWLSAYAFSTENWRRAASEVRFILGFSRDVLHRQRDELHEKNVRIVWAGRRPRLWRSVLRELEAAEELTQDNTGLTLAMCINYGGRAEIIDGVRKLAADAREGKIRPQDITEKSFSQYLYRPDMPDVDLFLRPSGEKRTSNFLLWQSAYAEMVYQDKLFPDFTKDDLFDAVYEYAKRDRRFGGAVDKFADK
>NZ_LT906467.1|WP_038591861.1|1965404_1966166_-|DNA-repair-protein-RecO
MASKRRGGSRPSWRDRAFVVRTYDFGEADRVIVLLTRTHGLVRGVAKGVRKSRSRFGSRLQPFVDLDVQVYPGRGLSTITAADTVAYHGAHIIEDFERYAAACAVLETAEKLTYEEGDTVLFDLVKNSIAQLQTANDPTQVLDAFILRATEHAGWGLSLYNCANCERLGPHRAFHAAVGGAVCTNCRPPGSLEVDPETLHAMWLLANGYAYAPAALNAGASATVLAQVHRATTAHLQYHLEAGLKSLRMMEQA
>NZ_LT906467.1|WP_084674324.1|1966155_1967130_-|GTPase-Era
MSTFFPDEADLPDDANAGAAGFTNTPEGFRSGFVSFVGRPNTGKSTLTNALVGEKVAIMADQPETTRRPIRGIVNRDDAQVILVDTPGMHRPRTLLGERLNDVVKDTFADVDVIGFTVPADEKIGPGDRYILDQIRRIKPNTPVVGIVTKLDKASRDTVGERLLELHELLGPDSEVVPVSATGGVQTDVLLDVLVSQLPEGPRFYPVGDVTDEGIEARIAELIREEALQGLRDELPHSVAVQVDEMVPDPGNPERTMIYAVIYLERPGQQRILDGPGGRRLSGITHRARKQIIELLGRNVYLDLRIKVLKNWQQDPKALGRLGF
>NZ_LT906467.1|WP_051904912.1|1967172_1968312_-|HNH-endonuclease
MINNETIANYFSLRNDGMALVAWVAEEGKTYDDLIALDMPDDYATDLIELAELFYGPVSHSRYQKRCRESARRLRFCVETLAVVKQASRNIKDANARWRFREELCRIAGDTQVVRRAARRIKGKYQQKKPLVDGLRTRRVGDKITMSITGPSKDVQPLVTTLKNAKDEEGRPLDPIEWMRTHRPIVQTDITTHAVLSVHDIARVIHGEGDDVLVELTDGTILTGAEVVERELREQCLITLTGPTLGPINTYDGRIATYKQRRACDAESQTCCWPGCNCPSEECEAHHLTEHVRGGETKPENLCWLCPYHNGVNGQKGFGRMERINGRLAWVSDATGKARFVEDERRERRADLAKYREAEAARKRTKARHLHAVQPEGAH

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Crispr_ID: NZ_LT906467_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_12

2185410-2185643

Orphan

Consensus_repeat	Method
AACTCCAAATGGAGCTAGCTCCATTTAC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_LT906467_12

>merge|NZ_LT906467|12|2185410-2185643|CRISPRCasFinder
TTTTCTAAACGGAGCTAGCTCCATTTGCACGGGAGCGGCCTGGAAAACCCCAGGTCGCGCGATCCCGGTTGTGCCAAATGGAGCTAGCTCCTTTTGTTGTGCCTCGCTGGCAAACTCCCTGGTCGCGCGAAACCGAAAACTCCAAATGGAGCTAGCTCCATTTACACCCAACGCGCCACCAAAACCGCAGGTCGCCACTTGACCGCAACTCCAAACGGAGCTAGCTCCATTTAC

>NZ_LT906467|12|10|2185410-2185643|CRISPRCasFinder
TTTTCTAAACGGAGCTAGCTCCATTTGC	ACGGGAGCGGCCTGGAAAACCCCAGGTCGCGCGATCCCGGT
TGTGCCAAATGGAGCTAGCTCCTTTTGT	TGTGCCTCGCTGGCAAACTCCCTGGTCGCGCGAAACCGAA
AACTCCAAATGGAGCTAGCTCCATTTAC	ACCCAACGCGCCACCAAAACCGCAGGTCGCCACTTGACCGC
AACTCCAAACGGAGCTAGCTCCATTTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038592362.1\|2178497_2180606_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224684
NZ_LT906467.1\|WP_038592392.1\|2194534_2195185_+\|metal-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224046
NZ_LT906467.1\|WP_144311844.1\|2181566_2182247_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038592353.1\|2173018_2173699_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NZ_LT906467.1\|WP_038592368.1\|2182250_2183681_-\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176471
NZ_LT906467.1\|WP_038592359.1\|2177808_2178492_-\|DUF2334-domain-containing-protein	unknown	unknown	gnl\|CDD\|225773
NZ_LT906467.1\|WP_051904940.1\|2191474_2191894_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038594685.1\|2180632_2181529_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|237571
NZ_LT906467.1\|WP_038592374.1\|2185003_2185405_+\|HIT-family-protein	unknown	unknown	gnl\|CDD\|223611
NZ_LT906467.1\|WP_051904941.1\|2191890_2192649_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_LT906467.1\|WP_038592377.1\|2187293_2188001_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_LT906467.1\|WP_051904942.1\|2193681_2194551_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238502
NZ_LT906467.1\|WP_038592383.1\|2189835_2190210_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237855
NZ_LT906467.1\|WP_038592371.1\|2183706_2184972_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_LT906467.1\|WP_038592356.1\|2173695_2173926_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|235659
NZ_LT906467.1\|WP_095066821.1\|2188443_2189781_+\|threonine/serine-exporter-family-protein	unknown	unknown	gnl\|CDD\|377697
NZ_LT906467.1\|WP_051904939.1\|2174120_2177645_+\|ExeM/NucH-family-extracellular-endonuclease	unknown	unknown	gnl\|CDD\|225249
NZ_LT906467.1\|WP_084674346.1\|2185748_2187281_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_LT906467.1\|WP_038592389.1\|2192599_2193619_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380502
NZ_LT906467.1\|WP_038592386.1\|2190212_2191478_+\|trehalose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|340820

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038592362.1\|2178497_2180606_-\|S9-family-peptidase	gnl\|CDD\|224684	COG1770, PtrB, Protease II [Amino acid transport and metabolism].	0
NZ_LT906467.1\|WP_038592392.1\|2194534_2195185_+\|metal-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	7.5819e-65
NZ_LT906467.1\|WP_038592359.1\|2177808_2178492_-\|DUF2334-domain-containing-protein	gnl\|CDD\|225773	COG3233, COG3233, Predicted deacetylase [General function prediction only].	1.69687e-58
NZ_LT906467.1\|WP_038592353.1\|2173018_2173699_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	3.92841e-139
NZ_LT906467.1\|WP_038592368.1\|2182250_2183681_-\|adenylosuccinate-lyase	gnl\|CDD\|176471	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.	5.5668e-176
NZ_LT906467.1\|WP_051904942.1\|2193681_2194551_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238502	cd01020, TroA_b, Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	1.27219e-48
NZ_LT906467.1\|WP_038594685.1\|2180632_2181529_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|237571	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional.	0
NZ_LT906467.1\|WP_038592374.1\|2185003_2185405_+\|HIT-family-protein	gnl\|CDD\|223611	COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases [Nucleotide transport and metabolism / Carbohydrate transport and metabolism / General function prediction only].	8.68865e-37
NZ_LT906467.1\|WP_051904941.1\|2191890_2192649_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.99236e-40
NZ_LT906467.1\|WP_038592356.1\|2173695_2173926_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|235659	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed.	3.89567e-33
NZ_LT906467.1\|WP_038592383.1\|2189835_2190210_+\|hypothetical-protein	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	1.03561e-08
NZ_LT906467.1\|WP_038592371.1\|2183706_2184972_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_LT906467.1\|WP_038592377.1\|2187293_2188001_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.05795e-85
NZ_LT906467.1\|WP_095066821.1\|2188443_2189781_+\|threonine/serine-exporter-family-protein	gnl\|CDD\|377697	pfam06738, ThrE, Putative threonine/serine exporter. ThrE is a family of bacterial and Archaeal proteins that catalyze the export of L-threonine from the cell. UniProtKB:Q79VD1 has been characterized as being necessary for this export. The domain exhibits 10 putative TMs and catalyzes the proton-motive-force-dependent efflux of threonine and serine.	3.9146e-43
NZ_LT906467.1\|WP_051904939.1\|2174120_2177645_+\|ExeM/NucH-family-extracellular-endonuclease	gnl\|CDD\|225249	COG2374, COG2374, Predicted extracellular nuclease [General function prediction only].	1.03195e-152
NZ_LT906467.1\|WP_084674346.1\|2185748_2187281_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.68449e-70
NZ_LT906467.1\|WP_038592389.1\|2192599_2193619_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380502	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria. This group belongs to the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.	3.60924e-77
NZ_LT906467.1\|WP_038592386.1\|2190212_2191478_+\|trehalose-6-phosphate-synthase	gnl\|CDD\|340820	cd03788, GT20_TPS, trehalose-6-phosphate synthase. Trehalose-6-Phosphate Synthase (TPS, EC 2.4.1.15) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.	0

>NZ_LT906467.1|WP_038592374.1|2185003_2185405_+|HIT-family-protein
MSTVFTKIINGEIPGRFVYKDEDVAAFLTIEPIAYGHTLVVPVKEVDKWTDIEPELWAKMNAVAQRIGSAIVSEFDCERAGYLIAGFEVPHAHIHVFPANDMSGYNLASVMRADETDPAKMDAAAETLRNAIG
>NZ_LT906467.1|WP_038592371.1|2183706_2184972_-|phosphoribosylamine--glycine-ligase
MRILVIGSGGREHALLKGLAGNELFVAPGNAGMESLAKCLPIDALTPQPIVDLAKEVDAELVVIGPEVPLVAGAADALREAGIPVFGPTQEAAQLEGSKAFAKDVMAAAGVATARALRVTPEEGTAGVESALEQFGPNYVVKDDGLAGGKGVVVTTDRAEAAAHANAVLEAGNPVLFESFLEGPEVSLFCLVDGETVVPLLPAQDHKRAYDNDEGPNTGGMGAYTPLPWLPEGGVERIVDEIARPVAREMVARGIPYQGLLYVGAAWGSEGPSVVEFNARFGDPETQPVLSLLKTPLDTVLYAVATGTLADLAPLEWEDGFAATVVLAAENYPASPVKGDAITGAELDNPDKVLHAGTKRTDAGYVSAGGRVLNVLGRGATLEEAVADAYRVIEGIEMRGSFYRKDIGRRAVAGEVSVEKQ
>NZ_LT906467.1|WP_038592368.1|2182250_2183681_-|adenylosuccinate-lyase
MTKKPANPNVLSNRYASPEMAKLWSAEHKIILERQLWIAVMRAQRELGVEIPQEAIDAYEAVIDQVDLDSIADRERVTRHDVKARIEEFNALAGHEHIHKGMTSRDLTENVEQLQIVRALELVRNKSVALLKAVGNRADAYKSLVMAGRSHNVAAQATTLGKRFASAADEILVAVARIESLLDGYRLRGIKGPMGTAQDMLDLMDGDEAKLAELETKVAHHLGFDTVFDSVGQVYPRSLDFEAISALVQLAAGPSSLATTIRLMAGNEVVTEGFKEGQVGSSAMPHKMNARSCERVGGFQVILRGYLTMVADLAGQQWNEGDVFCSVVRRVALPDAFFAIDGQLETFLTVLDEFGAFPAMINRELDRYLPFLATTRILMAAVRAGVGRETAHEVIKENAVAMALDMREHGAEQNLIERLANDERLPLDLAQLEEALADRHAFIGAAESQVDRVLARIDAVVQKYPDAANYRPGEIL
>NZ_LT906467.1|WP_144311844.1|2181566_2182247_+|hypothetical-protein
MVKRHASRALSAALVTSLCAALVACSHEPSEQAPAAAEPVSEERVLAFGESTHTTTTDPATGAQVEWEVAVEAPQRISGTEAANNIRSPEPQRYSAFYCYPVTLTPVRVDAPPEHATVPVPGLKLVTAQESVVRDADGAPVTTTRRANSVPAAPGSAHQPSGDAKVALRSAAEAYCDIGSGAPTGYTPDLEEGRAYTTVLASWERRVDPGEPATGVALENVRWEDR
>NZ_LT906467.1|WP_038594685.1|2180632_2181529_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MRPELSDYTHLSGGKVREIYQVDEDTLLMVATDRISAFDFSLEPAIPDKGRILTATSMFFFDLLAGVPNHLAGPIDDPRIPEEVLGRAMVVKKLDMVPFECVARGYLTGSGKKEYDEHGMVCGVKLPDGLVEASKLPEPIFTPATKAEQGDHDENVSFNYMAGKLGQELAERLRERTLEVYTRAAEYAESKGIILADTKFEFGLDADGELVLADEVLTPDSSRYWPADTYKEGQSQPSFDKQYVRNWLTGPKSGWRPSEGTQPPELPGSVVEATRDRYIEAYERLSGKKFADWPGANA
>NZ_LT906467.1|WP_038592362.1|2178497_2180606_-|S9-family-peptidase
MEFPKAPKHPITRSFHGREFVDDYEWLRDKNSPETIAYLEAENAATEHATQGFRGLADEIYGEIKSRVKETDMSVPQRAGDWWYYGRTIEGKNYALSCRVPATGEPWTPPEVSEEMAGEQVLLDANELAEGHDFFSLGASSVTTSGRLLAYSVDTTGDERFDLRIKDLETGELLPDVIEGVFYGAAWAGEDHLFYIRVDEAWRPYQVWRHKVGTAAADDVLVYEEQDEKFGVGVGADRAERFLYIIASSSLTTEYRVAPLAEPTAPFEVLWPRTEGVEYHPDYVKLGEDEYWIITHNRRGPNFAVSATPLATEDLPDLRDAPVIVPHSDTMRIEGIDTYRDFMFMSYRRGGISRLAVAPLTGGDFAPFTELEFSEELYTAGLAGNPEWDAPVVRVGYTSYTQPSQLLDYHVADGTFTLLKEQEVEGGYNPDDYVAERIWAKAEDGVEVPVSVVRRKAQAPGVAPTLLYGYGSYEASMDPGFSIARLSLLDRGMVWACAHVRGGGEMGRSWYDQGKMLHKKNTFTDFIACADTLIEHGITDPEHLVAEGGSAGGLLMGAVANMAPEKFAGIQAIVPFVDPLTSILKPELPLTVGEWEEWGDPYHDPEVYDYMSTYAPYENITAQDYPDILAVTSLNDTRVLYVEPAKWVAKLREYATGGEILLKTEMSAGHGGVSGRYAKWKQTAFEYAWTLVKSKAVPDVGE
>NZ_LT906467.1|WP_038592359.1|2177808_2178492_-|DUF2334-domain-containing-protein
MSGRLLVSISSIFDDTLEDVIPLVKGLDRKGIPVSLLVAPHIDKRWHLAKDGRTRDWLLQQAEHRALLLNGFDQAVQGRRSEFATLGEHEARLRLKGATRQMEALGFHLDMFAPPRWQMSEGTLKVLPEFGFRLAVSTSGIYSLVDATDAPFLRCRNLSVGEGYGTAKWWRRNIIAAAVRGAEKGNTIRLSISARELHKKKVRRDFTAAILCAQANGAEPADYRAFL
>NZ_LT906467.1|WP_051904939.1|2174120_2177645_+|ExeM/NucH-family-extracellular-endonuclease
MRSAHRLTTAFVIALAAGTVTVPTADAAPDGSNVVINEVYGGGGNSGATISNDFVELYNPTDADIDVTGWVLDQQSASGNSGNQTTLVGTVPAGGYFLIKGAAGSNKDNPLENADFESTFNFGGKEASAVLHDASGAQVDLVGWGGAKNSEGAPAKGTSNSTSVQRKEVGVDTDNNAADFEVAAPTPQGSGNAPVEPGEPDDPPVQPPAPGEVTPIADIQGTGVASPLEGQTVTTEGVVTAVFDEGGKNGFFLQTAGTGSAKKKAGEASDAIFVYMGRNQDFPQRGDSLQVTGKVSEYYKQTQLTLASKQKLGEALEAPKAIAIDELPAGDDAREPYEGMLVRPGTHTVTNNYSLNNTGDLGLVAGDKPLYNFTDINAPSKSGFATYEAEAAAREVHLDDGRTRNYFQTDKDTPLPYLVTSDKGVKSIRTTDQVEFQTDVVVDYSFDKWRYQPLQPITGKNTADELPITWEDSRAASIDVPGQVEGDYSIGFFNVLNYFSSLGEDEKGCKAYDDKEGNPITANRCKVRGAYTSKAFGNQQAKIVTAINTLDVDVLGLSEIENTAAVTGDVAKRDETLRNLVDALNKAAGKEQWELVASPTQLGTNEDVIRVAFIYKKDKVRPVGESKIFDDPAYTGTARQPLAQEFQTVAGEGNFVAVVNHFKSKGSVARNDEDSGDGQGNNADVRKAQSQALLDHLNKEDAWADLPTFIIGDLNSYSREDAITELEQGGFTLVHSEKDFDQASYQFGGRLGSLDHVLANTAASDLVQDAAVWNINGDESVAFEYSRHMANAQNFLGDGANPLYGYGNPFRSSDHDPIKVGFNLQDSEETGEEPGDEPGDEPTADRSIIKAEVREDGHLWVTYSDDEDNPVDLGKVTGEDGKDGADGADGKDGERGPKGDKGDAGADGKDGEQGPKGDKGEAGADGADGTDGKDGKDGSDGRGIESVSINEDGELIITYTDGKSENAGKVTGTDGKDGERGPKGDKGEAGADGADGTDGKDGKDGTAGDKGDKGEAGTDGKDGNDGAAGETGKDGAAGRGVKSFEIVDGVLVVAYTDGTVQKVGPIAGNDVAAGSDGEDGKDGADGRGVAKVEVDDEGNLVITFTDGTTQNAGQVQRPAQDGGDQGTTTSGSSTFGTVFGIIAALLAALGLGGAAAYYFMPQQVNELLKQVGLR
>NZ_LT906467.1|WP_038592356.1|2173695_2173926_-|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MARVVVNVMPKAEILDPQGQAVQRALGRIGVNGVEDVRQGKRFEIEVDDSVTDEELERVAETLLANTVIEDFEVIR
>NZ_LT906467.1|WP_038592353.1|2173018_2173699_-|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MTATIGVITFPGTLDDVDALRAVRLAGAEPKQLWHADDDLSGVDAVVVPGGFSYGDYLRSGAIAAQAPMMGAVVEAAKKGMPVLGICNGFQILTEAGLLPGALTRNQHLNFHCVDTYLEIANAETAWTSRFESGQKILVPAKHGEGRFQADKETVHQLEQEGRVVFRYTDNFNGSANAIAGVTNETGRVVGLMPHPEHAIEVLTGPSTDGLGLFESAIDAISKIGA
>NZ_LT906467.1|WP_084674346.1|2185748_2187281_-|HAMP-domain-containing-histidine-kinase
MTVNRFTAKSYNQASKPLEKQLVSMVVFVATLGILLSFATVYFLMRGILTQRVDEQLEEGIDTWAGQGTWIPSIGVPSEFAQATWFPGYPYPFSRYTPRGNPPDWEQLTVLDSPQTINSKNVDSSEELVKWRALASKSDDGTITLVAKRLESEERILRWLAVVEATLGLTAVIGIALAARTLVRRSLAPLREVEQTALAIADGDVDRRVPAWSRETEVGKLSYAVNTMVTQLQESVNDAQAKEEQMRRFVGDASHELRTPLTSVRGYAELYRKGMAPDADMVIDKIEEESGRMQLLVEDLLALTRAEGTRLDRKTVEMQKIVDAAVSSARAAYPERSIEVDDQCLRAAEVNGDPDRLHQVLMNLINNAFKHGGPEVDVVIRLRENLDRVVLEVADNGKGMSEEDAARIFDRFYRADASRNRAGGGGSGLGLAITKSLIEQHEGTITVQTAPGEGATFVISLPLLHKVEEDAPAAGAKDKTKGKAAKSKTKSKGKSKDAKRGNKENDEGER
>NZ_LT906467.1|WP_038592377.1|2187293_2188001_-|response-regulator-transcription-factor
MADTNQGIKVLVVDDEPNIVELITVSLKFQGFEVESANSGQEALTIAREYRPDAYILDVMMPGMDGFELLGKLRQEGLDGPVLFLTAKDAVEDRIHGLTIGADDYVTKPFSLEEVITRLRVILRRGNVTDDENQDGTIRYADLTLNDETHEVTKAGEIIDLSPTEFNLLRYLMLNAEVVLSKAKILDNVWHYDFGGDGNVVESYISYLRRKIDTGDVPLIQTVRGVGYVLRTPRQ
>NZ_LT906467.1|WP_095066821.1|2188443_2189781_+|threonine/serine-exporter-family-protein
MNIGARIGEILIANGTTSSDAIAQIRTVISAYGLHYCHVDITVNTITMNTIIGIERRTPVNVFRVVTMMSENYRKLQEADRLMRSIRAGATRPEVAEKILDDIENEPIPYRNARNLAGWTVMGASVSILLGGDLLMALVGGLTAFLIMGFNKVLSHNSLPYFYHCVLGGFLATIPAALFYDFSASIGHTIVPSQVIASGIIVLLAGLTLVQSLFDGITGSPVTAASRFFQTMLSSGGIVAGVAIGLYFAERMGVGLPPLETMLGKPSLGSAGWRILGGALASASFAVTCFAERQAVIVSGLTAAAGSTIYYVFLIPLGTDAFLATTACAIVIGLAGGLISRSLLINPVITAVAGVTPFLPGSGIYRGLYAVLNEQMVVGMSNIFTAIATCMALAGGVIFGEWVARRIRRPQLYIPYRAFKRAGRLTFQQIRRAEAAARRPRRRRH
>NZ_LT906467.1|WP_038592383.1|2189835_2190210_+|hypothetical-protein
MPPKITDSRPSPEAINEMEEQTASGARRIVATYAEDFFDGVTLMSMLGVEPKGFNYKKYAEEILGDEDEEATGSTAKKKATKKKATKKKATKKKATKKKATKKKATKKKATKKKATKKKTAKKS
>NZ_LT906467.1|WP_038592386.1|2190212_2191478_+|trehalose-6-phosphate-synthase
MYDFVVVANRLPVDRVGGRWQASPGGLVAALAPVLRARGGCWVGWPGETNTSLAPFSAGGIELVPVPLDEADYTDFYEGFSNSTLWPLYHDLIVAPQYHQAWWERYVAVNERFALSVEKQAAHGATVWVQDYQLQLVPGLLRERRPDLKIGFFLHIPFPSPDLFRQLPWREEILSSLQACDLIGFQRGTDEQNFRGLLPADARVRTGTFPISIDPDAVAPGDPARVRELVGNPELLMLGVDRMDYTKGILQRLLAFERFLEAGHQATLIQLATPSRERIEHYRETRREVEAAVGRINGRFGSVGRPVIHYVHHGVGKEELGSYYAAADIMLVTPFKDGMNLVAKEYVACHPDGSGALVLSEFAGAAVELDQAYLCNPFDVDSIVRAIEAAADPDPQRMRTMYEWVTTHDVDAWAASFLEAL
>NZ_LT906467.1|WP_051904940.1|2191474_2191894_+|hypothetical-protein
MKPVRALALALALPLAACSDAPTWQVVAVHTDPAEPGALLADAAGLANFHISETELDGNTACADLQASIRTEDDTFTIEEVEVGDAGNCEGGARHVHEQLTSILVPGAQFRTEQLTDTELLWTSTEDTVEPPSVRLMSL
>NZ_LT906467.1|WP_051904941.1|2191890_2192649_+|trehalose-phosphatase
MSPLDDPIAHLARAESLLVCLDFDGTLAEFNTDPYAVRAHPEALNAIACLLTLPNTEVAVLTGRHLEGLAEVLPETPSLQGLVRVGSHGAEPGPTLEPEDAAYLERIGSELERIATPPAYVEEKPYQRVLHVAPLAACDPERARELLRAARALDTGSRPVTPGHNVVEFSAVDVTKGSWLAQRKRDFAATFFAGDDTTDETAMAVLNQGPDVGVKVGAQDSAARYRVASVSEMAQLLTQLAHARRSYLAETS
>NZ_LT906467.1|WP_038592389.1|2192599_2193619_-|LacI-family-DNA-binding-transcriptional-regulator
MPATLASIAADLGISRTTVSNAYNHPDQLSPALRRRILSYAESRGYAGPNPHARSLRTQHTDTLGVVLTEHLSFAFEDRASVDFLAGVADSSEYALTLIPTGVSVHDAIVDGVIVYSVPENAQMLLDAKTRNLPLVICDQPTNVPDVPFVGIDDASAIAPAAEALVANGHRRIGILAKRLFSTPTNGFVEPAALDAADLHLQRARICGALEVFKAAGLRDVPVVTRDQNDLAAATDGARELLETHPELTAVLCTTDSMALGVIEYCRGRRAIPEELSVTGFDGIGVPGLTTVEQPNRRKGEVAAMLVRSLIEGRPQRREKTLLPTRFLPGTSVAHAPAG
>NZ_LT906467.1|WP_051904942.1|2193681_2194551_+|zinc-ABC-transporter-substrate-binding-protein
MMKRIAAVAFALTLTACGAQDAEQDTAQDTEQAGDGTMVATTQVWADVASAATGDEVEAIISNPSTDPHEYEPTAADLAKIAQAATVVANGGAYDAPLYTAAKGTLITALPPAEAHDHDHSEHEHGEHEHGHDHDHAHGEENEHIWYSTEAIRDVAEQIGGNSLDDKLAGIDESLAKLPETNVIQTHPIADAIVEESALVDATPESYRHATLNHSEPSAAAVAETLEAIKDADILINNSQSPNAVSERLVAAAKEAGVPVVDITETPQDGKNFFDYFQEIVDQLNAAAA
>NZ_LT906467.1|WP_038592392.1|2194534_2195185_+|metal-ABC-transporter-ATP-binding-protein
MLQLRNATTTPLWRDITCELAPGEFLAILGPNGSGKSTLLRAALGMQKLDSGTITLGGRVGYIPQQQMFPAHLPARVRDLVSLAGGEPESLLAFVGAPSLIDAHVGRLSGGQQQLVRQAQAFAQDPEIILADEPFLSLDVARQRQTIARFQESGAAVAMITHSIDPVIDIVDKVLYIGPNGHVIGTADEVLQSDVLSELYGAPVQVVRAGGKTVII

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Crispr_ID: NZ_LT906467_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_13

2310140-2310239

Orphan

Consensus_repeat	Method
CAAAAACTGCGCATTGCGTAGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906467_13

>merge|NZ_LT906467|13|2310140-2310239|CRISPRCasFinder
CAAAAACTGCGCATTGCGTAGTTTTCTCAGGGCACGTTCGAAGGTCGGGCACGTAGCGAACAAGCGTGCCACCCTCAAAAACTGCGCATTGCGCAGTTTT

>NZ_LT906467|13|11|2310140-2310239|CRISPRCasFinder
CAAAAACTGCGCATTGCGTAGTTTT	CTCAGGGCACGTTCGAAGGTCGGGCACGTAGCGAACAAGCGTGCCACCCT
CAAAAACTGCGCATTGCGCAGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_038592652.1\|2301877_2303032_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NZ_LT906467.1\|WP_038592691.1\|2319852_2320656_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038592619.1\|2298368_2299211_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|225450
NZ_LT906467.1\|WP_051904952.1\|2310901_2311339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038592695.1\|2320755_2322276_-\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143434
NZ_LT906467.1\|WP_084674352.1\|2312498_2313659_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|283837
NZ_LT906467.1\|WP_038594718.1\|2308710_2309913_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_LT906467.1\|WP_038592672.1\|2315469_2315871_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133394
NZ_LT906467.1\|WP_095066790.1\|2306022_2307369_-\|sodium:glutamate-symporter	unknown	unknown	gnl\|CDD\|223857
NZ_LT906467.1\|WP_038592669.1\|2313703_2315473_+\|pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|180614
NZ_LT906467.1\|WP_038592625.1\|2299736_2300555_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_LT906467.1\|WP_038592622.1\|2299256_2299670_-\|DUF4265-domain-containing-protein	unknown	unknown	gnl\|CDD\|379459
NZ_LT906467.1\|WP_038592678.1\|2317196_2317796_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237632
NZ_LT906467.1\|WP_038592675.1\|2315883_2317062_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237655
NZ_LT906467.1\|WP_038592688.1\|2317816_2319661_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_LT906467.1\|WP_038592638.1\|2301383_2301878_-\|DUF4411-family-protein	unknown	unknown	gnl\|CDD\|373028
NZ_LT906467.1\|WP_038592659.1\|2307421_2308714_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99784
NZ_LT906467.1\|WP_038592628.1\|2300557_2301355_-\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|376824
NZ_LT906467.1\|WP_038592664.1\|2311345_2312176_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143605
NZ_LT906467.1\|WP_038592655.1\|2303339_2305895_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_038592652.1\|2301877_2303032_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	2.07737e-16
NZ_LT906467.1\|WP_038592619.1\|2298368_2299211_-\|sulfurtransferase	gnl\|CDD\|225450	COG2897, SseA, Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism].	4.6204e-65
NZ_LT906467.1\|WP_038592695.1\|2320755_2322276_-\|aldehyde-dehydrogenase	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_LT906467.1\|WP_084674352.1\|2312498_2313659_+\|hypothetical-protein	gnl\|CDD\|283837	pfam06259, Abhydrolase_8, Alpha/beta hydrolase. Members of this family are predicted to have an alpha/beta hydrolase fold. They contain a predicted Ser-His-Asp catalytic triad, in which the serine is likely to act as a nucleophile.	6.78686e-09
NZ_LT906467.1\|WP_038594718.1\|2308710_2309913_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	3.27812e-10
NZ_LT906467.1\|WP_038592672.1\|2315469_2315871_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|133394	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	5.71302e-36
NZ_LT906467.1\|WP_095066790.1\|2306022_2307369_-\|sodium:glutamate-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	2.08166e-75
NZ_LT906467.1\|WP_038592669.1\|2313703_2315473_+\|pyruvate-dehydrogenase	gnl\|CDD\|180614	PRK06546, PRK06546, pyruvate dehydrogenase; Provisional.	0
NZ_LT906467.1\|WP_038592625.1\|2299736_2300555_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	7.65331e-138
NZ_LT906467.1\|WP_038592622.1\|2299256_2299670_-\|DUF4265-domain-containing-protein	gnl\|CDD\|379459	pfam14085, DUF4265, Domain of unknown function (DUF4265). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 139 and 168 amino acids in length.	2.66544e-34
NZ_LT906467.1\|WP_038592678.1\|2317196_2317796_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237632	PRK14164, PRK14164, heat shock protein GrpE; Provisional.	3.14722e-75
NZ_LT906467.1\|WP_038592675.1\|2315883_2317062_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237655	PRK14279, PRK14279, molecular chaperone DnaJ.	0
NZ_LT906467.1\|WP_038592688.1\|2317816_2319661_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_LT906467.1\|WP_038592638.1\|2301383_2301878_-\|DUF4411-family-protein	gnl\|CDD\|373028	pfam14367, DUF4411, Domain of unknown function (DUF4411). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 153 and 170 amino acids in length. There is a single completely conserved residue D that may be functionally important.	6.36075e-53
NZ_LT906467.1\|WP_038592659.1\|2307421_2308714_+\|hypothetical-protein	gnl\|CDD\|99784	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.	3.33541e-32
NZ_LT906467.1\|WP_038592628.1\|2300557_2301355_-\|pantoate--beta-alanine-ligase	gnl\|CDD\|376824	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (EC:6.3.2.1) catalyzes the formation of pantothenate from pantoate and alanine.	1.90422e-142
NZ_LT906467.1\|WP_038592664.1\|2311345_2312176_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	4.10637e-104
NZ_LT906467.1\|WP_038592655.1\|2303339_2305895_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0

>NZ_LT906467.1|WP_038594718.1|2308710_2309913_-|HNH-endonuclease
MSEQEAVQAIADRIEATFGGITRHKASLLYDIGIFDSLRLAPKCGARTTAGWLIRRLGISQTTAHEYVRIARKLTRHQLLAGAFADGAVNYSKVRLLMPYLAKNDEQLLVDMARDYTYHQLEAELALLERDDEDSAKAQPKSYVRIAERKNGRFGLWADLSPLEGAQVAAALKIGELAYHDVDLQDIIDRDAVDETLGAIPTSSGFGMPTGRVMLAAFMGMVNIVRSRPKNPLRTPGAHVNIVTTVDGGAYLPVGGSAASASVAHAVANAMVRVNTVDENGLILNTSRASRLATDGQVNALMTMWGGECATPGCNHTKFIEVHHVHDWATGGATDLDNLIPLCSACHSLVSDEYIEIKADGPDYHFVFPDGTRHVSMNYQRPKRDDTALTLAEYNALDDL
>NZ_LT906467.1|WP_038592659.1|2307421_2308714_+|hypothetical-protein
MSSFRTDANAAAQALLDDETLSRSTLWTHFVAEFTQAPGLFPVGVTEVPHEMVCVPAKALSRAAGNVSGCDVSPWVFDAAHTPAPEVPADEDATDAVELDQEAINEAVLTGLRAWALQLRRTGFPATELPGAAEIYIDVITELIDRPLGDETADAIRRGANTMKEAIEQADLDGVPPASAAQVMAVTEASASSGSPSAADTRIVRLETSTPLEYAAGQVIPVMQADRQGVWNSLAPALPPNELGQVEFHVRDELDVEVGDHVTLGTAYGPVPFPEDSTSPNERVLLIADGTGLAAAKAMVFELMDRPERPQVELMIGVEHEDEFYDLQTFASLASSAAARDWLTVTCVAEQVIDPESSEAPAVCEGLRRVWAPLEHLAAATGTWWGRRLILCGSTARCTLLADALREAGAPAPLVIAPDAEPDWFCQRAL
>NZ_LT906467.1|WP_095066790.1|2306022_2307369_-|sodium:glutamate-symporter
MEFTPYTMLTDIGWISLLLIVGNVLRNRMKVLQALLLPAPITAGLIGLVLGQEVLGLINWSEHVGTYTTLLIAVVFASMAYSMELGGSVAAGARNMWAYSTSMFMGQWGLFILLGLYLFAPLFGTEPWFGMMLPVGFIGGFGTAAAVGSALEGIGVENASSLGFTAATVGTLVAIVGGVIVANWGIRNGKAGQLQGDLPRELRTGYIENEDDRPAIGRATTNPSSIEPLALHGGFVVFTVLIAYMLNNLIKSQWENVSIPLFAMSFVVGLIGRGLLKAAGKSNYLDRDTITTISGAATDYMIAFGIASIIPAALAGYWQALLLLFVLGTIFCVVWMLWAGPLFFGEHWLERGIFGWGWATAAVATGIALLKMVDPKLKSGTLNEYGVAYVGFAPFEIGMTILAPIAVIAGFVTGFGWVSFAIAVGVVILAFTSKWVPVKEQAARSNGA
>NZ_LT906467.1|WP_038592655.1|2303339_2305895_-|ATP-dependent-chaperone-ClpB
MASFTPTTKTQEAIQQALQKASAAGNPDIRPAHLLQAILTQEDGIAAPVLKATGVDPDTVVREAGELVAGYPKAEGQNMANPNFNRDALNALNASQELAGELGDEYVSTEVLLAGIARGKDEAAELLTKRGATFEAIKAAFQSVRGNKKVTTEAPEDQFQALEKYSTDLTARAREGKIDPVIGRDSEIRRVVQVLSRRTKNNPVLIGEPGVGKTAIVEGLARRIVAGDVPESLKGKTLISLDLGSMVAGAKYRGEFEERLKAVLDEITSAEGEIITFIDELHTIVGAGASGEGAMDAGNMIKPMLARGELRLVGATTLNEYRQHIEKDAALERRFQQVYVGEPTVEDTIGILRGLKERYEVHHGVRIQDSALVSAAELSNRYITNRFLPDKAIDLVDEAGSRLRMEIDSSPQEIDELERIVRRLEIEEIALQKESDAASQQRLKDLRQELADQREKLGELKTRWSNEKAEIDKVQSAKEELERLRNESEIAEREGDYAKVSELRYGRIPELEAQVANAEASASETQKTMLTEEVTPDVIAEVVSSWTGIPAGKMMQGETEKLLHMEEILAGRVVGQKDAVNAVSDAVRRSRAGVADPNRPIGSFLFLGPTGVGKTELAKALSEFLFDDETAMVRIDMSEYGEKHSVSRLVGAPPGYVGYDAGGQLTEAVRRRPYSLVLFDEVEKAHQDVFDILLQVLDEGRLTDGQGRTVDFRNTVVILTSNLGAGGSHDQIMDAVKHHFKPEFINRLDDVVVFDALSAEQLVGIVDIQLGSLADRLASRRLTLHVSDAAKAWLAERGYDPAYGARPLRRLIQQAIGDRLAKALLAGYVRDGDTVNVDVAEGGEHLTVDAA
>NZ_LT906467.1|WP_038592652.1|2301877_2303032_-|ImmA/IrrE-family-metallo-endopeptidase
MVVRVDVAPEVLRWAVRRSGWDEDTTVRRAPKLDVWLSQEERPTLKQLEKFANATHTPLGLLFLPEPPVEAVPIPDMRTLGNVGVQQPSADLLDTIYQCQQRQDWYREHALMNGFDEVSFVGATTVEEPVEGVASEIRGALDFGLDERATFPNWEHALRQLIDRIEAVGVLVMVSGVVGSDPHRKLDPSEFRGFALADPLAPLIFVNGVDTKAAQIFTLIHELAHIWLGGSALSDAAMTAKDGPKAELWCNQVAAEVLVPLHALVQEFQGLVSVDELERLARTYRVSTLVILKRLFDAKALTWDEYIEAYEAEKQRVMSFLDGRRSDGGGNYYYTQPLRLSRSFSRAVIASALEGSTAYRDAYQLLGTKKHATFENLAEELGVA
>NZ_LT906467.1|WP_038592638.1|2301383_2301878_-|DUF4411-family-protein
MFLLDANILIEAKNRYYAFDLAPGFWDWLEDAYRQDLVCSIEAVRDELLQGNEELAEWTRANPGFFRAIDQPTTKHFQPLSQWAYSGSYRAEAIQAFVGNHADYLLVAYAREHQHTLVTHERSQPHSRKRILIPDACLAMGVDTADTFEMMRETGVTLHLRKSS
>NZ_LT906467.1|WP_038592628.1|2300557_2301355_-|pantoate--beta-alanine-ligase
MTHLVHTPEALKDILGAAPVSLVPTMGALHDGHLALVKHAKSLGNPVVVSIFVNPLQFAPGEDLDAYPRTLAEDVEKLEAEGVEAVFAPSPETMYPHGPRTTIHPGPLGQVLEGASRPTHFAGVLTVVAKLFALTGAADAFFGEKDYQQLALIRQMVEDLHMPVRIHGCPIVRDADGLALSSRNRYLSAAERQTALALPKALQTGSLEQARSLLDATPNLTLDYLVTTAPDLGELPAGFTGEARILVAAKVGSTRLLDNAPIQIS
>NZ_LT906467.1|WP_038592625.1|2299736_2300555_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MTSYLAPTKKVRVADLVQKKAAGEKWAMLTAYDYSTARAFAQAGIECMLVGDSAANVVYGYETTNQVSVDEMVYLGAAVVRGAGNALVILDLPFGSYEASDEQCVRTATDMIHRTGAHMVKLEGGVRIAPRIRALKNAGLAVCAHVGFTPQSVDSLSGFKVQGRDESAGQLLADVNAVTDAGADLIVFEMVPAALAAEITRECPVPTVGIGAGPDTDAQVLVWHDMADLPEGDHRARFVHRFGTIGADLTAAAAAYKRAVHTGEFPASEHSF
>NZ_LT906467.1|WP_038592622.1|2299256_2299670_-|DUF4265-domain-containing-protein
MQYPTTILTRVAMPGVENEQLAAHNLGGNHFVVASVPFVDVSLAVGDIVECVRVGGNWHVDRVLVRGGASTMRILPEEQQPHEIAETLLAFGCRVEIGPGGMLAASIGPDCPMEGIREWLDGLEADGVIQQAPGYMA
>NZ_LT906467.1|WP_038592619.1|2298368_2299211_-|sulfurtransferase
MSVFVSAEDLRLRIRAGEKNTILASLWEPEEGKAVSKYRSEHIPTSQFCDPAAHLAGLPGSRSGRNPLPAPEVVERAIRMWGIGPGRPVIAYDQGNCLYAARAWWVLRWMGIEDIHILDGGFADWDRRGFQTLAGPGSPAVRREVPTRPGSMPTAEMSQVREFEGLLIDARGADRFAGRKENLDLRAGHIPGALNLPVYDLFDKETRTLRSVEEIRGRLAEVGLTQNTDPAEVIVYSGSGNHSALLIAVMEHVGLPVVTHYVGGWSQWSAEKSNPIATDV
>NZ_LT906467.1|WP_051904952.1|2310901_2311339_+|hypothetical-protein
MNEKQKRHYRARMAVAQLFRSALDQSDERARFLERLDVKTMPVIVPALGDTLASNIREAARRHFEAGEEHIVVPVCLPAPNGIKLSVIIVSTHDAKTFWQLDMNELHGNVEMAQVVEALDASKKWDVDALDSPQQQELKDLAASM
>NZ_LT906467.1|WP_038592664.1|2311345_2312176_-|carbon-nitrogen-hydrolase-family-protein
MKLACIQITTGPSVRDNVALVTPLIRDAAAEGATLIVLPEATSQAFGQGRLDTQAEDLDGEFATQLAELAKETGTTIVAGTFRPADIREVDGKTIHRVFNTALITGGGVHKGYDKIHTYDAFNYRESDTVRPGEELVLFEHEGVQVGVAVCFDIRFPEQFRELARRGAEVIVVPTSWADGEGKLEQWQLLTRARALDSGVFLAAAGQARPDFLEKAGEESGPTGIGHSVVTAPDGTVVAEAGYGPETLIVDIDPARVAKVRKALPVVEIEAATTMR
>NZ_LT906467.1|WP_084674352.1|2312498_2313659_+|hypothetical-protein
MHSATYQPALITAQLKGAVWELGQVRGDVEKQLRNAENAAHALHATGFAGPAADAAVTRIHAQQTSLRSHHAELTRIRIILETAAELHERLDHLAELAARYGHHRIILWLNQLSFALDEAAGDALRTNIPHHTIDELFHHPDHTLDELHAHHAATVPAATQRTIAEHGATILEAGPGSTTVMVGDYHSPTRIITMVAGTHTGKPEDLGRELDKAQRIAARTGAAVVVWQGYGPPANLPDAGIQTPARRGAGNLSRFQAALDERFPDAQKTIVAHSYGTLLPTRAATEGGLLVDDLWLVGSAGVAGNSVDDLTLAGPDSEVYVVDSPEDIILALRSGPAAALGASPSHPSYGATAVEGVAGSHTDYFTDPAFLSALAQGAHDAPENR
>NZ_LT906467.1|WP_038592669.1|2313703_2315473_+|pyruvate-dehydrogenase
MAENFAQALVSKLETLGITRIYGLVGDSLNPLSDAVRQSDIEWVHVRNEEAAAFAAGADALAQDELAVCGASCGPGNTHFVQGLFEAHRNGSKLLAIASHIPTVEIGSSFFQETHPELLFQECSSYCEVVHNPEQGMRVFHNAVQNTLAGNGVSVMVVPGDVFAADAPEGPLSADSVYATGKNKRVYPDPHEAARLVEAINKADKVTLFCGYGARDAREEVFALAEKIKAPIGHSFRGKMYFEYDNPFDVGMSGLLGYGACLDAMEESDLFIMVGTDFPYTDWLPDENVAQIDIDGAHIGRRTKVDYPVVGDVQSVIENILPHVEEKTDSSFLDKMLKRHYQLLDHVVKSYTEEAFESKKPIHPELAASVLDELADDDAYFTVDTGMCNVWSSRYLTPNGKREEAASFLHGTMANALPMAIGVQAAQPDRQVISWSGDGGLGMLMGELLTIKLHQLPVKVICFNNSSLGMVKLEMMVAGMPYFGTDHEEANYAEIAKGAGIKSFRIEEPEDLEPMLKEALAYDGPVLVDIVTDPEALSLPPGITWDMMKGFTKSGARTAFLEGGVGRLFNLAKSNLRHIGGAAAIEFGG
>NZ_LT906467.1|WP_038592672.1|2315469_2315871_-|helix-turn-helix-transcriptional-regulator
MAKETEQYFVISVAAELTGMHAQTLRTYDRMGLVTPMRTSGGGRRYSRRDISLLRRIQQLSQEDGVNLAGIKTIIELTEQIDDLQEELAAKHEENAQLRRRLEARPRGGELVHVPRSTAVVTWEPAAARRRRR
>NZ_LT906467.1|WP_038592675.1|2315883_2317062_-|molecular-chaperone-DnaJ
MAMQQEWANKDYYGDLGVSSSASAADIKKAYRKLARENHPDSNPGNKAAEEKFKRVAEAYDVLGNEQERKEYDQFKSMMGSGGFGRFGGGGSGFPGGFRTTQTDFSDVFGHPGAGQAGDGGLGDLFGGLFNRGGAAGRNARPSRGADVETEITLDFREAAKGTTFPVELTGEAPCTTCHGSGSKDGKTHRCGTCSGSGYVRENSGAFGMARPCAECQGTGEIIEDPCTTCHGTGTVRRTRSITVRIPAGVIDGQKVRLAGQGEAGPNGTPAGDLFVHVHVREDAVFTRSGDDLEVTVPVSFGELALGGTVTVPTLEKRVRVKIPAGTPNGRTLRVKGRGVPRKSGKAGDLLVTVEVAVPKDLDAAATSALRAYHQAERDSGFDPRAGWAGNQ
>NZ_LT906467.1|WP_038592678.1|2317196_2317796_-|nucleotide-exchange-factor-GrpE
MTNPNPEMPEDPGAPENTDEEAVTPQEAEAAASIDEELSDIEAAVAEDEGESDVEKQLAERTEDLQRVSAEYANYRRRTERERGQIAEHAKAKFAGELLPLLDDLDLAEQHGDLKEGPLKAFADKLRSVLAVQKVAAFGAEGEAFNPEIHEAVQDLSSGGEQVIGSVLRKGYAVGDKLIRNAMVIIADPAESAEADDEA
>NZ_LT906467.1|WP_038592688.1|2317816_2319661_-|molecular-chaperone-DnaK
MARAVGIDLGTTNSVVSVLEGGEPVVIANAEGSRTTPSVVAFAKNGEVLVGQSAKNQAVTNVDRTIRSVKRHMGEDWTVNIDDKDYTPQEISARTLQKLKRDAEAYLGDEVTDAVITVPAYFEDAQRQATKEAGQIAGLNVLRIVNEPTAAALAYGLEKNDSEQTILVFDLGGGTFDVSLLEIGDGVVEVLATAGDNELGGDDWDNRIVEWLVDKFKSAQGVDLSKDKMAMQRLREAAEKAKIELSSSQQASINLPYITVDSEKNPLFLDETLSRTEFQKITSDLLDRTKTPFNQVIKDAGLSLGDINHVVLVGGSTRMPAVTDLVKEMTGKEPNKSVNPDEVVALGAALQAGVLRGDVKDVLLLDVTPLSLGIETKGGVMTKLIERNTTIPTKRSETFTTAEDNQPSVQIQVFQGEREMASANKLLGSFELAGIAPAPRGVPQIEVTFDIDANGIVSVSAKDKATGKENTIKIQDGSGLSQEEIDRMIKDAEQHADEDKKRREEQETRNGAESAAYQTRKFMEDNEDKLPEDLKTRVTEAADAVDEALKGDDLEAVKSAVEKLNTESQELGKVLYEAQANEGATQADAPTDDDVVDAEVVEEDAEESKDSDNK
>NZ_LT906467.1|WP_038592691.1|2319852_2320656_-|hypothetical-protein
MKTTRFAAAALAVSLTASAVAALPAQAYETRYDAESNQCTITFTDKDTERVNGAYSVLFTRLGEQVRDSFEGEEAKAQAKVVWEYGQRKEVKSASDLPVPADRKVSDAQAALALGKQKDKYWRMVGFLNASKNDVITEQKITISPEKAHELGPLYGVDFGPVVGGTVGGVLFGTSFVEFRDGIIDAAKTHAPEFAGPVVSYFQAFSACAEGESRSSSVLPASSMTSSQTTGLGIAGVIVTLFALVGLGYAARPLIDDALAQFQRQLN
>NZ_LT906467.1|WP_038592695.1|2320755_2322276_-|aldehyde-dehydrogenase
MTVYPNPGTAGSTVKFREQYDNYIGGDWVAPVDGEYFDNITPVTGETFCRVARGKEADITLALDAAHKAAPAFGKTSPAERALMLHRIADRMEEHLEDIAVAETWENGKAVRETLAADIPLAIDHFRYFAGAIRAQEGRLSQIDDNMVAYHFNEPLGVVGQIIPWNFPLLMAVWKLAPALAAGNAVVLKPAEQTPASILYLLDLIGDLIPDGVVNVVNGFGSEAGAALSGSDRIAKIAFTGSTQVGKIINKAAADKVIPVTLELGGKSPSLYFEDIFARDDNFKQKAIEGFAMFALNQGEVCTCPSRALVHESIADEFLQLGVERVKQIKVGNPLDTEVQMGAQASKEQMDKIVSYLELGPKEGAETLIGGGVNKLEGLENGFYIEPTVFKGTNDMKIFQDEIFGPVMSVTTFKDFDDAIRIANDTIYGLGAGVWSRNQNTIYRAGRAIQAGRVWVNQYHSYPAHAAFGGYKQSGIGRENHLMMLNHYQQTKNLLVSYDENETGLF

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Crispr_ID: NZ_LT906467_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906467_14

2521219-2523273

Unclear

Consensus_repeat	Method
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	PILER-CR
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CRISPRCasFinder
GTCGCCGTCCTTTACGGGNNNNNACGGCCTTTCATTGAGGG	CRT

28 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of NZ_LT906467_14

>merge|NZ_LT906467|14|2521219-2523273|PILER-CR,CRISPRCasFinder,CRT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGAAAAGCGAGGTTTCCGGCAAATTCACCCAGTCAAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGACCCAATGGGGGCACGATAGGGAGCCGGAGCTTGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGAGGACATTGCCAACGGCAACGGGGAACGAGCGGAAGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGTGGCCACCCAACCAGGCACACAGCCTGTTCGAGAAGGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGTAATGAACAAGTTCAAGGGTCGCCGGGGGAATCCCCCGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGTCACGCACCTAGACACCGTCGCGACACTCGACCAAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGCCTGCGCGGACGCGACTTCCGGCTTGTTCGGGTCGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCTCATGATCATGGCCGACGGCACCGAGACCGAGGTCGACGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGTTGAAAGGTCTGGTCCGCATGGCTTTCTCAATTGACGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCTCAACGCGTTCACCACCAAAAACTCCCCCTCCGGGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGTGCACACCCCAGCCCCGCTGGTCTGTCAGACGCACGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGGTTCTGCCGACGACATCAAGCGCAACGTCACCATGGCGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGATCTTCAACGGCTTCCGGGTGGGGCCATGCGGCGAAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGTCATGCACCGCGGGCGGGGGTTCTGCACGAACTGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGACATGAAAGTGCACCTTAAGGGCGCGACGCACTGGGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGTCGTCATGGGGCCGTACAGCCTCAACGGATACATCGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGCGGGTAAATGTGGTCGATGGTTAGGTTCTCGGTCGTGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGACCGTGCCCGCTAGGAATCTCCAGCGTGCCCAACGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGCCACACCTAATCCCTGCCTATCCTCTGCACGCGATCGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGACAAAACGCGGGCCTGCAGAACTGATCATCACGGAGCTGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGAACCCCAACATGACCGCGTCGATCAACGGCCACGAGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGTTTTGGGGACGACCCAACGAGCAAGGCGCGAACCGGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGTGTTGCGCGGCGGCTTGGGGGTCGATTTCCGGGTATGGTCGCCGTCCTTTACGGGGCGGCCTTTCATTGAGGGTTCGCAAAACGCCTGGAAGACACGCGGCGCACGTTCCGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGGACACCGCCTCCGATCCCCCGCCGAACGCCGGCAGAGTCGCCGTCCATTACGGGACGGCCTTTCATTGTGGGTGGTCGACCTCGATCGCGCCGGGCGAAAGCAAGGTGTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGGACCTGCTCGAAGAACATGTGCCCATACGCCAGCGCGTCGCCGTCCTTTACGGGACGGCCTTTCGTTGAGGGTTCTTCGCTGTCTCCGGCACGATCTTGACGTACTGTCGCCGTCCTTTACGGGACAGGACGGCCTTTCATT

>NZ_LT906467|14|4|2521219-2523203|PILER-CR
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GAAAAGCGAGGTTTCCGGCAAATTCACCCAGTCAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCCAATGGGGGCACGATAGGGAGCCGGAGCTTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	AGGACATTGCCAACGGCAACGGGGAACGAGCGGAAG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGGCCACCCAACCAGGCACACAGCCTGTTCGAGAAGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TAATGAACAAGTTCAAGGGTCGCCGGGGGAATCCCCC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCACGCACCTAGACACCGTCGCGACACTCGACCAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GCCTGCGCGGACGCGACTTCCGGCTTGTTCGGGTCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CTCATGATCATGGCCGACGGCACCGAGACCGAGGTCGAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TTGAAAGGTCTGGTCCGCATGGCTTTCTCAATTGACG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CTCAACGCGTTCACCACCAAAAACTCCCCCTCCGGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGCACACCCCAGCCCCGCTGGTCTGTCAGACGCAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GGTTCTGCCGACGACATCAAGCGCAACGTCACCATGGC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ATCTTCAACGGCTTCCGGGTGGGGCCATGCGGCGAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCATGCACCGCGGGCGGGGGTTCTGCACGAACTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GACATGAAAGTGCACCTTAAGGGCGCGACGCACTGGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCGTCATGGGGCCGTACAGCCTCAACGGATACATC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CGGGTAAATGTGGTCGATGGTTAGGTTCTCGGTCGTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCGTGCCCGCTAGGAATCTCCAGCGTGCCCAAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GCCACACCTAATCCCTGCCTATCCTCTGCACGCGATCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACAAAACGCGGGCCTGCAGAACTGATCATCACGGAGCT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	AACCCCAACATGACCGCGTCGATCAACGGCCACGA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TTTTGGGGACGACCCAACGAGCAAGGCGCGAACCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGTTGCGCGGCGGCTTGGGGGTCGATTTCCGGGTATG
GTCGCCGTCCTTTACGGGGCGGCCTTTCATTGAGGG	TTCGCAAAACGCCTGGAAGACACGCGGCGCACGTTCC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GACACCGCCTCCGATCCCCCGCCGAACGCCGGCAGA
GTCGCCGTCCATTACGGGACGGCCTTTCATTGTGGG	TGGTCGACCTCGATCGCGCCGGGCGAAAGCAAGGT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCTGCTCGAAGAACATGTGCCCATACGCCAGCGC
GTCGCCGTCCTTTACGGGACGGCCTTTCGTTGAGGG

>NZ_LT906467|14|12|2521219-2523203|CRISPRCasFinder
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GAAAAGCGAGGTTTCCGGCAAATTCACCCAGTCAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCCAATGGGGGCACGATAGGGAGCCGGAGCTTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	AGGACATTGCCAACGGCAACGGGGAACGAGCGGAAG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGGCCACCCAACCAGGCACACAGCCTGTTCGAGAAGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TAATGAACAAGTTCAAGGGTCGCCGGGGGAATCCCCC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCACGCACCTAGACACCGTCGCGACACTCGACCAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GCCTGCGCGGACGCGACTTCCGGCTTGTTCGGGTCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CTCATGATCATGGCCGACGGCACCGAGACCGAGGTCGAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TTGAAAGGTCTGGTCCGCATGGCTTTCTCAATTGACG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CTCAACGCGTTCACCACCAAAAACTCCCCCTCCGGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGCACACCCCAGCCCCGCTGGTCTGTCAGACGCAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GGTTCTGCCGACGACATCAAGCGCAACGTCACCATGGC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ATCTTCAACGGCTTCCGGGTGGGGCCATGCGGCGAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCATGCACCGCGGGCGGGGGTTCTGCACGAACTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GACATGAAAGTGCACCTTAAGGGCGCGACGCACTGGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCGTCATGGGGCCGTACAGCCTCAACGGATACATC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CGGGTAAATGTGGTCGATGGTTAGGTTCTCGGTCGTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCGTGCCCGCTAGGAATCTCCAGCGTGCCCAAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GCCACACCTAATCCCTGCCTATCCTCTGCACGCGATCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACAAAACGCGGGCCTGCAGAACTGATCATCACGGAGCT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	AACCCCAACATGACCGCGTCGATCAACGGCCACGA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TTTTGGGGACGACCCAACGAGCAAGGCGCGAACCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGTTGCGCGGCGGCTTGGGGGTCGATTTCCGGGTATG
GTCGCCGTCCTTTACGGGGCGGCCTTTCATTGAGGG	TTCGCAAAACGCCTGGAAGACACGCGGCGCACGTTCC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GACACCGCCTCCGATCCCCCGCCGAACGCCGGCAGA
GTCGCCGTCCATTACGGGACGGCCTTTCATTGTGGG	TGGTCGACCTCGATCGCGCCGGGCGAAAGCAAGGT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCTGCTCGAAGAACATGTGCCCATACGCCAGCGC
GTCGCCGTCCTTTACGGGACGGCCTTTCGTTGAGGG

>NZ_LT906467|14|2|2521219-2523273|CRT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GAAAAGCGAGGTTTCCGGCAAATTCACCCAGTCAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCCAATGGGGGCACGATAGGGAGCCGGAGCTTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	AGGACATTGCCAACGGCAACGGGGAACGAGCGGAAG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGGCCACCCAACCAGGCACACAGCCTGTTCGAGAAGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TAATGAACAAGTTCAAGGGTCGCCGGGGGAATCCCCC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCACGCACCTAGACACCGTCGCGACACTCGACCAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GCCTGCGCGGACGCGACTTCCGGCTTGTTCGGGTCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CTCATGATCATGGCCGACGGCACCGAGACCGAGGTCGAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TTGAAAGGTCTGGTCCGCATGGCTTTCTCAATTGACG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CTCAACGCGTTCACCACCAAAAACTCCCCCTCCGGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGCACACCCCAGCCCCGCTGGTCTGTCAGACGCAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GGTTCTGCCGACGACATCAAGCGCAACGTCACCATGGC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ATCTTCAACGGCTTCCGGGTGGGGCCATGCGGCGAA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCATGCACCGCGGGCGGGGGTTCTGCACGAACTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GACATGAAAGTGCACCTTAAGGGCGCGACGCACTGGG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GTCGTCATGGGGCCGTACAGCCTCAACGGATACATC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	CGGGTAAATGTGGTCGATGGTTAGGTTCTCGGTCGTG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCGTGCCCGCTAGGAATCTCCAGCGTGCCCAAC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GCCACACCTAATCCCTGCCTATCCTCTGCACGCGATCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACAAAACGCGGGCCTGCAGAACTGATCATCACGGAGCT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	AACCCCAACATGACCGCGTCGATCAACGGCCACGA
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TTTTGGGGACGACCCAACGAGCAAGGCGCGAACCG
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	TGTTGCGCGGCGGCTTGGGGGTCGATTTCCGGGTATG
GTCGCCGTCCTTTACGGGGCGGCCTTTCATTGAGGG	TTCGCAAAACGCCTGGAAGACACGCGGCGCACGTTCC
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	GACACCGCCTCCGATCCCCCGCCGAACGCCGGCAGA
GTCGCCGTCCATTACGGGACGGCCTTTCATTGTGGG	TGGTCGACCTCGATCGCGCCGGGCGAAAGCAAGGT
GTCGCCGTCCTTTACGGGACGGCCTTTCATTGAGGG	ACCTGCTCGAAGAACATGTGCCCATACGCCAGCGC
GTCGCCGTCCTTTACGGGACGGCCTTTCGTTGAGGG	TTCTTCGCTGTCTCCGGCACGATCTTGACGTACT
GTCGCCGTCCTTTACGGGACAGGACGGCCTTTCATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906467.1\|WP_051904979.1\|2526483_2526963_+\|DUF1850-domain-containing-protein	unknown	unknown	gnl\|CDD\|378093
NZ_LT906467.1\|WP_038593181.1\|2518096_2519128_+\|hypothetical-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
NZ_LT906467.1\|WP_038593178.1\|2515412_2518100_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NZ_LT906467.1\|WP_084674369.1\|2526994_2529016_+\|TRAP-transporter-permease	unknown	unknown	gnl\|CDD\|273983
NZ_LT906467.1\|WP_038593168.1\|2511815_2512346_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372273
NZ_LT906467.1\|WP_144311859.1\|2524693_2525113_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380358
NZ_LT906467.1\|WP_038593160.1\|2505702_2506794_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227760
NZ_LT906467.1\|WP_038593197.1\|2530416_2530878_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038593163.1\|2506868_2509718_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_LT906467.1\|WP_051904978.1\|2523451_2524240_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380322
NZ_LT906467.1\|WP_038593173.1\|2512681_2513881_+\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NZ_LT906467.1\|WP_038593195.1\|2529090_2529765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378684
NZ_LT906467.1\|WP_038593187.1\|2520722_2521025_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LT906467.1\|WP_038593184.1\|2519124_2520726_+\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_LT906467.1\|WP_038593193.1\|2525480_2526479_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|270285
NZ_LT906467.1\|WP_144311867.1\|2529856_2529979_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370769
NZ_LT906467.1\|WP_038593190.1\|2524247_2524679_+\|DUF488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377317
NZ_LT906467.1\|WP_144311860.1\|2531170_2531362_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906467.1\|WP_038593175.1\|2513886_2515416_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_LT906467.1\|WP_095066824.1\|2509929_2511573_-\|putative-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225420

Protein	Function_ID	Function_description	E-value
NZ_LT906467.1\|WP_051904979.1\|2526483_2526963_+\|DUF1850-domain-containing-protein	gnl\|CDD\|378093	pfam08905, DUF1850, Domain of unknown function (DUF1850). This family of proteins are functionally uncharacterized. Some members of this family appear to be misannotated as RocC an amino acid transporter from B. subtilis.	6.00039e-25
NZ_LT906467.1\|WP_038593181.1\|2518096_2519128_+\|hypothetical-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	1.59334e-63
NZ_LT906467.1\|WP_038593178.1\|2515412_2518100_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.02959e-85
NZ_LT906467.1\|WP_084674369.1\|2526994_2529016_+\|TRAP-transporter-permease	gnl\|CDD\|273983	TIGR02123, conserved_inner_membrane_protein, TRAP transporter, 4TM/12TM fusion protein. In some species, the 12-transmembrane spanning and 4-transmembrane spanning components of tripartite ATP-independent periplasmic (TRAP)-type transporters are fused. This model describes such transporters, found in the Archaea and in Bacteria. [Transport and binding proteins, Unknown substrate].	0
NZ_LT906467.1\|WP_038593168.1\|2511815_2512346_-\|hypothetical-protein	gnl\|CDD\|372273	pfam12724, Flavodoxin_5, Flavodoxin domain. This is a family of flavodoxins. Flavodoxins are electron transfer proteins that carry a molecule of non-covalently bound FMN.	4.72167e-11
NZ_LT906467.1\|WP_144311859.1\|2524693_2525113_-\|cupin-domain-containing-protein	gnl\|CDD\|380358	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain. This family includes prokaryotic and archaeal proteins homologous to HP0902, a functionally uncharacterized protein from Helicobacter pylori and Spy1581, a protein of unknown function from Streptococcus pyogenes. These proteins demonstrate all-beta cupin folds that cannot bind metal ions due to the absence of a metal-binding histidine that is conserved in many metallo-cupins. HP0902 is able to bind bacterial endotoxin lipopolysaccharides (LPS) through its surface-exposed loops, where metal-binding sites are usually found in other metallo-cupins, and thus may have a putative role in H. pylori pathogenicity.	2.21577e-25
NZ_LT906467.1\|WP_038593160.1\|2505702_2506794_-\|hypothetical-protein	gnl\|CDD\|227760	COG5473, COG5473, Predicted integral membrane protein [Function unknown].	2.48006e-09
NZ_LT906467.1\|WP_038593163.1\|2506868_2509718_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_LT906467.1\|WP_051904978.1\|2523451_2524240_+\|nitroreductase-family-protein	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	1.18772e-77
NZ_LT906467.1\|WP_038593173.1\|2512681_2513881_+\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	2.23297e-22
NZ_LT906467.1\|WP_038593195.1\|2529090_2529765_+\|hypothetical-protein	gnl\|CDD\|378684	pfam11611, DUF4352, Domain of unknown function (DUF4352). Members of these family are putative lipoproteins that fall into the Antigen MPT63/MPB63 (immunoprotective extracellular protein) superfamily.	0.00199186
NZ_LT906467.1\|WP_038593187.1\|2520722_2521025_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.34726e-20
NZ_LT906467.1\|WP_038593184.1\|2519124_2520726_+\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.52235e-94
NZ_LT906467.1\|WP_038593193.1\|2525480_2526479_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|270285	cd13567, PBP2_TtGluBP, Substrate binding domain of Thermus thermophilus GluBP (TtGluBP) of TAXI family of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. This subgroup includes TtGluBP of TAXI-TRAP family and closely related proteins. TRAP transporters are comprised of an SBP (substrate-binding protein) and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function.	1.41779e-129
NZ_LT906467.1\|WP_144311867.1\|2529856_2529979_+\|hypothetical-protein	gnl\|CDD\|370769	pfam09983, DUF2220, Uncharacterized protein conserved in bacteria C-term(DUF2220). This domain, found in various hypothetical bacterial proteins, has no known function. The family represents just the C-terminus.	9.22008e-05
NZ_LT906467.1\|WP_038593190.1\|2524247_2524679_+\|DUF488-domain-containing-protein	gnl\|CDD\|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	6.20611e-25
NZ_LT906467.1\|WP_038593175.1\|2513886_2515416_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	2.65011e-80
NZ_LT906467.1\|WP_095066824.1\|2509929_2511573_-\|putative-DNA-binding-domain-containing-protein	gnl\|CDD\|225420	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription].	1.32688e-27

>NZ_LT906467.1|WP_038593187.1|2520722_2521025_+|CRISPR-associated-endonuclease-Cas2
MSRDDTRRTLICYDIINDRRRTRVADALSEFGDRVQYSVFVVDISPARLLQVKSRLSTIIEPGEDSILFCDLGRVAELSETKFGYLGKSREVTDNDALIL
>NZ_LT906467.1|WP_038593184.1|2519124_2520726_+|CRISPR-associated-endonuclease-Cas4/Cas1
MTREEDFLPISLVLHTAFCERRAWLEANGESTLTYQMQAGDNAHEAVDTVAHSRTHRLTSYPLRSERLGIVGKADVVEVFEGNEVGLVEHKATPVRRKAQVTPANRLQLALQRECLRDAGFDVIEQSIYFTDHRRRVEVELTDDDSQVATDTIARTRAIVDSTHAPVPLLDDERCSRCSHFSICLPDEHHGGNARRRIHAADPDGQVLHLTMQGSRASIRKGRVVVEKSGERLADAPLARIHGVVVHGNIDLSSALHRNLLWDNVPVVWCSSTGRVYGFSKPADGPNGGARVQQHVLSSRGCLPIARGMVQAKIWNQATLLRRNGDAPDAIRYLQAEAERAATAADIPELFGIEGDAAAQYFHEFGSMLRPAQMETLGWQWKGRHGRGASDPLNILLNYCYGLLRAEVLRAILSCGLDPHAGFLHSSGRNKPALALDLMEEFRAPLADSVVLSLVNRREIKASDFTHVNGAARLRDQARRKVIAAFERRVQTSIRHPLFGYDATWRRVIEIQARMVLGVITGSQPSYEGVRVR
>NZ_LT906467.1|WP_038593181.1|2518096_2519128_+|hypothetical-protein
MKHSLVVAGNVYSGLSHFALAGLSLLARSLSDGVVTTHWSNEPTPRGVLDTEDIAPEEIAIEIKRLSQSWYQGWTSIRVQYAAGEFSPFSPRFKQIAPRKNPDDWPKHQQARTSALDKLSVDDDHLALQLIHSLGEAAYWRFDGKDPRPDHGASRWEMKTRNQGEEFVSQKLFKYVEALSDWDTKDILAGLTGQRVKDPFGDDASRTPSGFTPPARTDLALAFAALIGIGQFPVSARAQQMALTPCAYPDTALHTKVAVLPVPTIPLTPERFESIVLSQEWASVVNAFGAEEIGRTPESLLHDSAVTALRQFGAPAAAVFRVHLGGSSLAPERYFESGKVRLL
>NZ_LT906467.1|WP_038593178.1|2515412_2518100_+|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MTKLTLSNFDEFFAAMNNGHFPFSWQCELLEYIVRTGRWPDQIAAPTGAGKSSVVDVHIFANALFAAGEAPRVPRRLHTVVNRRGLVDNQYQRALEIQRALTQSTTDDGNHPDVVRKVADALRSLVPVGSNMPCTVSVLRGGLSSRSLPVSDLASCAVIASTPDMWGSRALFQGYGSTKYARPRETTLVTSDSVVVLDEAHLNRQLLITARRIREIQLAGADTGLPALQVVETTATPANQSEDLSVIGVDPNTLDESRDAALQRRLHATKQLKHVQTPKWNGRKANRGVVDGALEQIHAWLEEDNRVGPIGCIVNHVDTALKVANALKRKKVRYILLVGRLRPFDLQKLEEDYPGVLTPTGNKQVDVVVATQTLEVGVDVDFQYMVTELAPATAIQQRSGRVNRLGKYDTSELAILEPVAPPAANKEFAPYKGDDLNDAFQWLTAFENGTDVNPALLASNPAPPTTPSRLLYQRLEYRDVELLAKSAERRANPIELDFWLRDSLETEAPSAGVVLRKKLPQTQEATVELLEALPPRAEEVFPGSISTVRELAVKLQQDSEERRAATLLLVYRAGDIELLDEPNEIKPGDTLIVSDQLPFTTQGVLTIPAEDEQLPDEVPADGVTVYLPDEEDLDLDLFRAASSMTPAEFLEFWYDRFPGDAEAGMSIEVSASSIEDPRGDLAAWILRRDSQTLRTDAETVQEWSPRVDKNTPPPSLTQHQTDVAKRARIICDSLSVNPALADRVVTASLLHDEGKRDPRFQRMLGNLDLDQPWAKSRTRSRQEIQRAKAGSGLPVGWRHEQLSAAMAEDLRLQGDERVDELVVHIVGASHGRGRDLFPQVGEELLVGSATAQKLFTQGQWESQVRKLTREYGAYALAACEALERAADAQISGEGR
>NZ_LT906467.1|WP_038593175.1|2513886_2515416_+|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MPQLALTATFPLGTYYGHRSDGSVEAYPSPLRLHAALLSAAAQGHLSEDGEPSQASLDALQWLEKHPPNGIYQPDTRLLNNGNQRIGYRDVGTFDSKSMRKKVDARPISNGVAVQSPYGYMWHDVPEGVAATLTQLAEDVPYLGESHSVVALSAQSFTPNLWLSPTANCFTKEAFARPVAAEGRTAALIANHRARFTAKPPTLARDAFKKSQVPHSERPTEIGIAESWYEPAEPLPEDAPWGTVYLFELDREVEKRDRVALALSMHKALIARLGYGATPLITGKYNDGIKQPPNRLAIQYLPPRLAQLLNKDGPLLGLFVPSDATPEELLQVQRAVDIRELWSRRLGKIRIRFSNETRSGTRFWPAPEPGAYRLWETEMPIVPEVRRIRRNGSEWSLGDSALLSAAYVWRNDFTLTGSGPTRYIDLRDQAARRGVSTLDTHAVTRHVRDFAHHSHESVPVQPYRAVLDLGDLAGPQAAVMLGQSRHLGGGLLRPLDINLNSSEIPGEKP
>NZ_LT906467.1|WP_038593173.1|2512681_2513881_+|type-I-U-CRISPR-associated-protein-Cas7
MQLQDLLDACTPGGASVLTSVTELSAAAGPHASVTPAKFIDGSTPCFGYEPRFIDGAPTETVIIDSIPSAANRGEQAITRAIEGGDPLLSRIPRILVHYGSESYTDIELPHRFADGHIRASSYEGEPVTKADWYRDMRNSTPRDYRAILNTAPIALLAGAWDSTRPSNQVRVRRSITGETIGILADQSRPGSEQQGARSGARVDPVGAAVHLDPSSFQQIIASQEDDLSKKKLEDINAKIKKAKKGETFSGSGVGVGALPPTLDPLGGVSCSRIIRSWVLSFTALRQLNFGDSPEQTVAARALIAALGLALIARAEQELYYRSNCDLVEVSAPVVKLDQRYGNFQELPPLSIEAADALLEAALEHAEKLGVADWHGQVREVIGNPAIIAGAVDDAEDKE
>NZ_LT906467.1|WP_038593168.1|2511815_2512346_-|hypothetical-protein
MHIYFSSVYGSTRQYAEELARRLGTTAQEIPDPAEVSAAAAEGPIVVLAPAHGPMNAAAKFAKALPEQTIQARPTCVVTVGMTLDHVVQETDPTAELLGDRASHIKRFYLPGRLNYSELTPAHAGVMRGIIGALKLKPRKSENERSMIEMYKKDTDRVDLSRLDEIVAWCEASENK
>NZ_LT906467.1|WP_095066824.1|2509929_2511573_-|putative-DNA-binding-domain-containing-protein
MTLEFKEDPSHREGANRARPKLVEKIIDEAICMANSEVGGGYIIVGVHDKIDGPDAFTGTDLEEEDVERRIFNASKPGMNVSATSFLFRGARLLTVYIPEARALYTRNDGAAKRRENDGGKFSCKPIPEETRRAIDAIRRNPDYSNGETDLTPEDLSLGVIEEARRLLDAPFRKGLGDEPTIASTRTGLLRELGLLRQDGSLKRAAEILLAEPEPTHVTVRHLWRDFPGEDPKVTEISAPVILALPRLRDLIDAHVQQEIARVQFDDGQEIAIPAIPAQAIDEAISNALIHRDWRISKPIVVEQSKRLLKVTSPGPLPPSVSVDRLLTVTSEPRNNRLMAAMRALGLAEESSRGFDRMWAAMIRSGRDIPEVIATETAVSVIFSGANPDTEFVRGIHALSKRFGKPISTVGTLIVLRHLHDSPLISLQTAKAKTQQATNEARELLDSLEELGVLARLGGADDWGLSAEARALLGGAETGESMANGVQSWVESQLEEGRTLQSAQIAAHAGISTQEAGKMLRDLRDQGKAKIDPAGPPRGRGTRWIKA
>NZ_LT906467.1|WP_038593163.1|2506868_2509718_-|leucine--tRNA-ligase
MTEANTPANSQNPDGPAYRYGAALANDIEKRWQAYWREHGTFNAPNPVGPLATGEELPKEKLNVQDMFPYPSGAGLHVGHPLGYIATDVYARYNRMLGKNVLHTLGYDAFGLPAEQYAIQTGTHPRTTTEKNIENMTRQLDQLGLGHDKRRAVATTDPEFYKWTQWIFLQIYNAWFDEEQQKARPIEDLVRDLMSGARKTKDGRNFRDLTTAEKHKAIDAFRLVYLDESMVNWCPGLGTVLANEEVTAEGRSERGNFPVFRKRLRQWMMRITAYSDRLLDDLELLDWPEKVKSMQRNWIGRSRGADVNFASPAGDLTVFTTRPDTLFGATYMVLAPEHELVDVLLADAYPENTDERWTYGQATPREAVDAYKRAIAAKSDVERQENKEKTGVFLGTYATNPVNGEQVPIFIADYVLTGYGTGAIMAVPAHDERDYEFATVFGLPIVPVLDGDVSEEAFTGDAAHINSANADGLDLNGLGKAEAIQAALAWIVEKHKGKEKIQYKLRDWLFARQRYWGEPFPIVYDENGQAHSIPEDQLPVELPDVEDYKPVSFDPDDADSEPSPPLAKAKDWVEVRMDLGEGEKTYWRDTNVMPQWAGSSWYQLRYIDPTNEDAFCDLENERYWTGPRGENDSGGVDLYVGGVEHAVLHLLYARFWHKVLYDLGFVTSKEPYRRLFNQGYIQAYAYTDSRGVYVPAAEVEEKDGRFFFDGAEVNREYGKMGKSLKNAVAPDDIAADFGADTLRVYEMSMGPLDTSRPWATKDVVGAHRFLQRLWRLVVDEETGEATVTDAELSTDDAKQLHRTIAGVREDYEHLRDNTVVAKLIEYVNYLTKTYPDSAPRAAVTPLVQMVAPVAPHIAEELWAKLGHADTLTFEPFPTFDESLLTDDTVEVPVQINGKVKARIDVAVDASKEDMEATALVDARVADLTDGKTIVKTIVVPGRMVNLVVK
>NZ_LT906467.1|WP_038593160.1|2505702_2506794_-|hypothetical-protein
MTTPNDGNTNPNGAGDTGGSSPYGGFEPYPDNPAGSHPENAGSSAWPGSEQSSYGQNAYGQNGYDQHSFDQFDVNAAAGAAGATALRYHGQQLVDGTYGDGTTPHPINDPANNGFTHTKGTGKLRVMEALSWAFKTTFGNWQTWLLFGLLAAVFMAASTFEPTGLLGLLSIFIYPLVWSAGLQQTLSRKFSLSEVKAPTYGKTLGMSVVIGLFVTAVLFVLALIFGIGIFSSIDPSTMPTDPAMIEDDPMAFGPLFGRIAGLVGVLMLVSLLVAPFFATQTLYAADNAGSFGEAMKAGFAAGKRNYLPLLGLSILSGLLIGFGTVLAFVGLIVTSPVVILAMAHAYRQISGGPVPSESAPQTY
>NZ_LT906467.1|WP_051904978.1|2523451_2524240_+|nitroreductase-family-protein
MTDALAPKPEDLSIDAPPELRAQLTHRTIREFTDQPVTDETMETLYRVAMRTASSRGMQHASLIRVTDPKLRERLAEIGAQEYVGRAPVYLVFIVDSARNAAILREQGYDPAAAGKTKVFVEGFTDACLMAQNVVNAAERLGLGANYLGNIHNDTAAVIETLQLPRYTFPVVGLTLGWPGQNPQLKPRMAPEFRVMENGYQHRTSWSEALADYDKEMTTYYDLRNANSRVDSYINQVVKQLTPQRELEDESLQAARWQGFVI
>NZ_LT906467.1|WP_038593190.1|2524247_2524679_+|DUF488-domain-containing-protein
MRIYTLGFSHKSAEEFFDILRDFGVRRVVDIRRSNTNQLAGFTKKDDLRYFLQVILGMPYTHELALAPSTDLMRAYRHDEIGFDEFSKQLREEYDAGEVSSLDRSLFNDAVLLCSEADPSTCHRLIAAEYLAEVWDDVEVVHL
>NZ_LT906467.1|WP_144311859.1|2524693_2525113_-|cupin-domain-containing-protein
MSQPEDDLPVNRPEVFGAADSADSTDHATCIQTINAVAPRPDNARPGVKRLLQGDGANLIVFNFCPGQTLPDHKAAHPVTVQCLNGALEFECGGERFPLKPGEVVHLRAYVPHAVYCPDDALSEGNILLLSMLTGEQHS
>NZ_LT906467.1|WP_038593193.1|2525480_2526479_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MRIRSTVAAVAAAALLLTGCSDSGSDAGGDSSNSASSGESSVDFVTIATGGTSGPYYQIGAAMSQVLSDTLGADSSVQASGSSVENIQLLTDGRAEVAFAMGDATRQAIEGTGPFEGKEALKDLKAITALYPNFVQIVTTKSSGITSVEDLRGKRVGVGDQNSGVELNAQTILEAHGMSYDDIDQDYLSYADSIDQIKNGQTDAAFVTSGLPNSSVMDLVTTDDVVIVPIEGEGMEKLQEKYPFFESDAIPGGTYDEAEDVPTASITNQLLVSPSLDDDQVYEITKALFENLDQIQGAHNAAKQITLDSVEDGLATELHPGARRYFEEVGAL
>NZ_LT906467.1|WP_051904979.1|2526483_2526963_+|DUF1850-domain-containing-protein
MLVDAHVHRLCALALTLLLTLGLTSCGNTPELVVEDAESGAEFFHVDADEVDSISLAWIHSIEKTPWEEHYRVEDKHLVLTDVYLKSFGAGAPTDLEGLTRNEDGMVHTSSIDREIPRLQWVHSHETSHTLTITFLNGEPPLVLDDEIPHHTFATVYVR
>NZ_LT906467.1|WP_084674369.1|2526994_2529016_+|TRAP-transporter-permease
MDSTNSVSRKVDLDTTGSGSNSTQLSDETSERDAQELLEKYDRESRLREFASPRTAWVITAFAVVVSLYHMYTAYFGTPPVLVHRAVHVAMILVLAFTLYPAYKGASRTKVPIYDIVLALAAIAPAVYIFLNFEDLVRRAGVPTQMDLVFGILLIVLVLEAARRITGWALPILGILFMAYALFGREMPGMLRHRGYTWENLTSFLYLTTEGIFSTAVGVAASYIFLFVLFGAVLQKSGMGQFFNDIALALAGQSRGGPAKVAVVASGFLGSINGAAVANVVTTGAFTIPMMKRVGYKPVFAGAVESSASVGGQILPPVMGAAAFIMAETLGMPYRDIAIAALVPALLYYLGVIAQVHLRATKEGLRGISKENLPAVKEVMKERGHLMLPLLFLIYMLFFTGRTIIFSALLTIIVTVVVAELRPATRMGVMEIVEALADGAKTAVSVSIACAAVGVIVGVVTLTGFGVTLANAIVTIGAGNLLLSLFLTMIACIILGMGLPSIPTYIITATMAAPALGQLGVEPLVAHLFVFYFGLFANITPPVALASFAAAGLSGADPVKTGFQSMRLALAGYIIPFIFVFNPAMLMQDVSLVEALQVTVTGVVGVLLLSVAVEGHLMVRVNPVLRVLFAGAALTMMAPDLSTDLIGIAVALVCIVIQSVLAKKEGLLSVKNI
>NZ_LT906467.1|WP_038593195.1|2529090_2529765_+|hypothetical-protein
MDGDLPLKQSLMIVVGTLVVFGGIFLLLPDEDDGASGSEEAPVEGTAVFPSHGMVDEKISAAREAGEAPATFGATGESVEPEGARLQDREAPAKESFELVPLETGETANVVGQRVYVGPLRNLGKSFEGKDLVCHDVSFLNGMDHETWLSASDFSLITPTGQKMEYTQPSAFPRWDRSVLPGQTTSGVQCYQAPIAEGTYTVNYTPFNAKYPLAAWKSGLSSAE
>NZ_LT906467.1|WP_144311867.1|2529856_2529979_+|hypothetical-protein
MSASEVDALDYLRSHSSSECLRIEQERIVFDDAVELLRRV
>NZ_LT906467.1|WP_038593197.1|2530416_2530878_+|hypothetical-protein
MPQEEGTESKFGPGKQYSWQSLYNLDQRLLKINADLLEISFERYLLRGGAHTRIALDNVAIGLANEISTLEFDETIEGAQYFATTSFDRTIDGVPSYVVVTRIGIPYVEYKDTEVWDNIQAPDFSGLDAGVQTRFDDNYYYVVSVMQRSKYSF
>NZ_LT906467.1|WP_144311860.1|2531170_2531362_-|hypothetical-protein
MSRVDDCFAALDAYRQGDIDQIVALFAASALEAVEHGAWIAHELDSVLGEWRQQLPARSDALA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906467_14	14.7\|2521686\|36\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2521686-2521721	36	NZ_CP009216	Corynebacterium ureicelerivorans strain IMMIB RIV-2301 plasmid unnamed, complete sequence	10071-10106	1	0.972
NZ_LT906467_14	14.14\|2522195\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2522195-2522229	35	NZ_CP009216	Corynebacterium ureicelerivorans strain IMMIB RIV-2301 plasmid unnamed, complete sequence	11360-11394	3	0.914
NZ_LT906467_11	11.1\|1960740\|36\|NZ_LT906467\|CRISPRCasFinder	1960740-1960775	36	NZ_CP046258	Gordonia sp. 135 plasmid pG135, complete sequence	124639-124674	5	0.861
NZ_LT906467_11	11.1\|1960740\|36\|NZ_LT906467\|CRISPRCasFinder	1960740-1960775	36	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	358227-358262	6	0.833
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK359313	Gordonia phage Vasanti, complete genome	2255-2289	6	0.829
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MH271295	Gordonia phage Ebert, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MG099941	Gordonia phage Bjanes7, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MN586055	Gordonia phage Cynthia, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MT771342	Gordonia phage Matteo, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MT818424	Gordonia phage GemG, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	NC_041883	Gordonia phage Attis, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK279911	Gordonia phage Sproutie, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MN428053	Gordonia phage Denise, complete genome	2260-2294	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK801734	Gordonia phage LordFarquaad, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK875797	Gordonia phage Haley23, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	NC_031251	Gordonia phage SoilAssassin, complete genome	2254-2288	7	0.8
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK279912	Gordonia phage Savage, complete genome	2254-2288	7	0.8
NZ_LT906467_8	8.1\|1494601\|32\|NZ_LT906467\|PILER-CR	1494601-1494632	32	MK240575	Thermobifida phage P318, complete genome	13815-13846	8	0.75
NZ_LT906467_11	11.1\|1960740\|36\|NZ_LT906467\|CRISPRCasFinder	1960740-1960775	36	NZ_LR594691	Variovorax sp. WDL1 plasmid 3	305316-305351	8	0.778
NZ_LT906467_11	11.1\|1960740\|36\|NZ_LT906467\|CRISPRCasFinder	1960740-1960775	36	NZ_LR740760	Escherichia coli strain BEN5202 isolate laying hen 51 weeks old plasmid pbAPEC5202	35217-35252	8	0.778
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MT771346	Gordonia phage MichaelScott, complete genome	2769-2803	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MN234218	Gordonia phage Powerball, complete genome	2267-2301	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MH155867	Gordonia phage Easley, complete genome	2769-2803	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK801729	Gordonia phage Clark, complete genome	2769-2803	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK937609	Gordonia phage Sekhmet, complete genome	2769-2803	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MK279848	Gordonia phage Dorito, complete genome	2267-2301	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MN428057	Gordonia phage Suerte, complete genome	2267-2301	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MG845393	Gordonia phage Beenie, complete genome	2769-2803	8	0.771
NZ_LT906467_14	14.27\|2523133\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523133-2523167	35	MN428048	Gordonia phage DobbysSock, complete genome	2267-2301	8	0.771
NZ_LT906467_14	14.26\|2523062\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523062-2523096	35	MK801721	Gordonia phage William, complete genome	30050-30084	9	0.743
NZ_LT906467_14	14.26\|2523062\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523062-2523096	35	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	391748-391782	9	0.743
NZ_LT906467_14	14.26\|2523062\|35\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2523062-2523096	35	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	390957-390991	9	0.743
NZ_LT906467_14	14.23\|2522844\|37\|NZ_LT906467\|PILER-CR,CRISPRCasFinder,CRT	2522844-2522880	37	NZ_CP007515	Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence	5822-5858	11	0.703

1. spacer 14.7|2521686|36|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009216 (Corynebacterium ureicelerivorans strain IMMIB RIV-2301 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.972

gcctgcgcggacgcgacttccggcttgttcgggtcg	CRISPR spacer
gcctgcgcggacgcgacttccggcttgttagggtcg	Protospacer
***************************** ******

2. spacer 14.14|2522195|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009216 (Corynebacterium ureicelerivorans strain IMMIB RIV-2301 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.914

gtcatgcaccgcgggcgggggttctgcacgaactg	CRISPR spacer
gcaatgcaccgggggcgggggttctgcacgaactg	Protospacer
*. ******** ***********************

3. spacer 11.1|1960740|36|NZ_LT906467|CRISPRCasFinder matches to NZ_CP046258 (Gordonia sp. 135 plasmid pG135, complete sequence) position: , mismatch: 5, identity: 0.861

ggccaccgcggtggtggcggcttcggcggcggaggg	CRISPR spacer
ggcgaccgcggtggtggtggcttcggcggcgggttg	Protospacer
*** *************.**************.  *

4. spacer 11.1|1960740|36|NZ_LT906467|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.833

ggccaccgcggtggtggcggcttcggcggcggaggg	CRISPR spacer
ttcggcggcggtggtggcggctttggcggcggaggg	Protospacer
  * .* ****************.************

5. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK359313 (Gordonia phage Vasanti, complete genome) position: , mismatch: 6, identity: 0.829

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggatcga	Protospacer
***********************.***   * **

6. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MH271295 (Gordonia phage Ebert, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

7. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MG099941 (Gordonia phage Bjanes7, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

8. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MN586055 (Gordonia phage Cynthia, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

9. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MT771342 (Gordonia phage Matteo, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

10. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MT818424 (Gordonia phage GemG, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

11. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to NC_041883 (Gordonia phage Attis, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

12. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK279911 (Gordonia phage Sproutie, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

13. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MN428053 (Gordonia phage Denise, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

14. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK801734 (Gordonia phage LordFarquaad, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

15. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK875797 (Gordonia phage Haley23, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

16. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to NC_031251 (Gordonia phage SoilAssassin, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

17. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK279912 (Gordonia phage Savage, complete genome) position: , mismatch: 7, identity: 0.8

acctgctcgaagaacatgtgcccatacgccagcgc	CRISPR spacer
acctgctcgaagaacatgtgcccgtactggattga	Protospacer
***********************.***   * .*

18. spacer 8.1|1494601|32|NZ_LT906467|PILER-CR matches to MK240575 (Thermobifida phage P318, complete genome) position: , mismatch: 8, identity: 0.75

tgaggcggactgttaacggcacctcaaccccc	CRISPR spacer
cgatctggaccgtgaacggcacctcaaccgca	Protospacer
.**  .****.** *************** *

19. spacer 11.1|1960740|36|NZ_LT906467|CRISPRCasFinder matches to NZ_LR594691 (Variovorax sp. WDL1 plasmid 3) position: , mismatch: 8, identity: 0.778

ggccaccgcggtggtggcggcttcggcggcggaggg	CRISPR spacer
ttcagcggcggtggtggcggctttggcggcggcggt	Protospacer
  * .* ****************.******** **

20. spacer 11.1|1960740|36|NZ_LT906467|CRISPRCasFinder matches to NZ_LR740760 (Escherichia coli strain BEN5202 isolate laying hen 51 weeks old plasmid pbAPEC5202) position: , mismatch: 8, identity: 0.778

ggccaccgcggtggtggcggcttcggcggcggaggg	CRISPR spacer
ggcattggtggtggtggcggcggcggcggcggaggc	Protospacer
***  . *.************  ************

21. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MT771346 (Gordonia phage MichaelScott, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

22. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MN234218 (Gordonia phage Powerball, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

23. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MH155867 (Gordonia phage Easley, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

24. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK801729 (Gordonia phage Clark, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

25. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK937609 (Gordonia phage Sekhmet, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

26. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK279848 (Gordonia phage Dorito, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

27. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MN428057 (Gordonia phage Suerte, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

28. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MG845393 (Gordonia phage Beenie, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

29. spacer 14.27|2523133|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MN428048 (Gordonia phage DobbysSock, complete genome) position: , mismatch: 8, identity: 0.771

acctgctcgaagaacatgtgcccatacgccagcgc-	CRISPR spacer
acctgctcgaagaacatgtgcccgtac-tggatgtg	Protospacer
***********************.*** . ...*.

30. spacer 14.26|2523062|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to MK801721 (Gordonia phage William, complete genome) position: , mismatch: 9, identity: 0.743

tggtcgacctcgatcgcgccgggcgaaagcaaggt	CRISPR spacer
aggtcgacctcgatcgcgccgcgcgagttcgtcgg	Protospacer
 ******************** ****.  *.  *

31. spacer 14.26|2523062|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 9, identity: 0.743

tggtcgacctcgatcgcgccgggcgaaagcaaggt	CRISPR spacer
tgccggtggtcgatcgcgacgggcgagagcaaggc	Protospacer
** . *   ********* *******.*******.

32. spacer 14.26|2523062|35|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 9, identity: 0.743

tggtcgacctcgatcgcgccgggcgaaagcaaggt	CRISPR spacer
tgccggtggtcgatcgcgacgggcgagagcaaggc	Protospacer
** . *   ********* *******.*******.

33. spacer 14.23|2522844|37|NZ_LT906467|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007515 (Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.703

tgttgcgcggcggcttgggggtcgatttccgggtatg	CRISPR spacer
atggaagtatcggctcgggggtggatttccgggtatg	Protospacer
    . *.. *****.****** **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

234977 : 245682

Escherichia_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011116984.1\|234977_237863_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.2e-190	39.9
WP_012360777.1\|237988_238396_+	recombinase family protein	A0A0C4UR34	Shigella_phage	2.4e-19	57.9
WP_001067858.1\|238341_239046_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000018326.1\|239196_240012_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.3e-161	98.5
WP_001067858.1\|240168_240873_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001082319.1\|241312_242116_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|242115_242952_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_005297378.1\|243155_244331_-	chloramphenicol efflux MFS transporter Cmx	NA	NA	NA	NA
WP_011113070.1\|244352_244406_-	chloramphenicol resistance leader peptide	NA	NA	NA	NA
WP_038593562.1\|244944_245682_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.3e-36	41.2

DBSCAN-SWA_2

1251534 : 1277403

Pasteurella_phage(84.21%)

protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038590279.1\|1251534_1251942_+	hypothetical protein	A0A1L6BZD2	Pasteurella_phage	4.0e-14	54.9
WP_084674406.1\|1252085_1253417_+	DUF2800 domain-containing protein	A0A1L6BZD5	Pasteurella_phage	1.3e-125	55.6
WP_157727804.1\|1253416_1253581_+	hypothetical protein	NA	NA	NA	NA
WP_051904820.1\|1253600_1254323_+	DUF2815 family protein	A0A1L6BZE0	Pasteurella_phage	9.8e-40	46.3
WP_038590283.1\|1254437_1256963_+	hypothetical protein	A0A1L6BZE6	Pasteurella_phage	6.6e-301	61.1
WP_038590286.1\|1257256_1257538_+	VRR-NUC domain-containing protein	A0A1L6BZE4	Pasteurella_phage	2.2e-19	48.4
WP_038590289.1\|1257518_1258892_+	DEAD/DEAH box helicase	A0A1W6JQF1	Corynebacterium_phage	5.1e-154	59.7
WP_038590292.1\|1258888_1259125_+	hypothetical protein	NA	NA	NA	NA
WP_157727805.1\|1259152_1259302_+	hypothetical protein	NA	NA	NA	NA
WP_157727806.1\|1259304_1259466_+	hypothetical protein	NA	NA	NA	NA
WP_038590295.1\|1259462_1260137_+	hypothetical protein	NA	NA	NA	NA
WP_084674274.1\|1260349_1261045_+	hypothetical protein	A0A1L6BZE3	Pasteurella_phage	1.6e-23	51.4
WP_038590303.1\|1261183_1261471_+	hypothetical protein	A0A1W6JQB4	Corynebacterium_phage	7.1e-18	55.9
WP_157727807.1\|1261489_1263121_+	hypothetical protein	A0A1L6BZD9	Pasteurella_phage	1.1e-86	36.9
WP_144311818.1\|1263194_1264442_+	hypothetical protein	A0A1L6BZF1	Pasteurella_phage	7.7e-117	55.0
WP_051904824.1\|1264438_1265893_+\|protease	Clp protease ClpP	A0A1L6BZF6	Pasteurella_phage	1.6e-60	37.2
WP_051904825.1\|1265893_1266283_+	hypothetical protein	A0A1L6BZF4	Pasteurella_phage	3.9e-19	47.1
WP_038590306.1\|1266294_1267236_+	hypothetical protein	A0A1L6BZF0	Pasteurella_phage	5.0e-36	34.2
WP_038590308.1\|1267249_1267612_+	hypothetical protein	NA	NA	NA	NA
WP_038590311.1\|1267634_1268102_+	hypothetical protein	NA	NA	NA	NA
WP_038590314.1\|1268086_1268422_+	hypothetical protein	A0A1L6BZE8	Pasteurella_phage	2.2e-34	60.9
WP_038594167.1\|1268445_1268706_+	hypothetical protein	NA	NA	NA	NA
WP_038590317.1\|1268711_1269104_+	hypothetical protein	NA	NA	NA	NA
WP_038590320.1\|1269100_1269805_+	hypothetical protein	A0A1L6BZE9	Pasteurella_phage	4.2e-43	44.6
WP_038590323.1\|1269899_1270262_+	hypothetical protein	A0A1L6BZG6	Pasteurella_phage	4.6e-06	32.2
WP_051904827.1\|1270267_1270618_+	hypothetical protein	A0A1L6BZG5	Pasteurella_phage	2.5e-17	50.0
WP_051904828.1\|1270652_1274846_+\|tail	phage tail tape measure protein	A0A1W6JQH4	Corynebacterium_phage	4.3e-119	39.4
WP_038590326.1\|1274846_1275770_+	hypothetical protein	NA	NA	NA	NA
WP_038590329.1\|1275774_1277403_+	hypothetical protein	A0A1L6BZG4	Pasteurella_phage	3.3e-192	57.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906467

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection