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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_LT906454 Streptococcus acidominimus strain NCTC11291 chromosome 1 2 crisprs DEDDh,RT,WYL,cas3,csm6,csa3,DinG 0 1 22 0

Results visualization

1. NZ_LT906454
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906454_1 840703-840791 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_LT906454_2 920516-920609 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_LT906454_2 2.1|920550|26|NZ_LT906454|CRISPRCasFinder 920550-920575 26 LT599585 Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid 295031-295056 4 0.846

1. spacer 2.1|920550|26|NZ_LT906454|CRISPRCasFinder matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 4, identity: 0.846

gctatgactgatacaagcgca--tcaac	CRISPR spacer
gctctgactgatacaagcgcaggcca--	Protospacer
*** *****************  .**  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 12981 : 94864 55 Streptococcus_phage(19.05%) transposase,tRNA,integrase attL 26221:26241|attR 91022:91042
DBSCAN-SWA_2 159086 : 166633 6 Erysipelothrix_phage(16.67%) NA NA
DBSCAN-SWA_3 201718 : 267918 52 Leptospira_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_4 272462 : 340552 60 Lactobacillus_phage(15.79%) holin,transposase,tRNA,integrase attL 276056:276071|attR 341434:341449
DBSCAN-SWA_5 362990 : 414095 41 Planktothrix_phage(27.27%) transposase NA
DBSCAN-SWA_6 482119 : 532459 39 Bacillus_phage(22.22%) protease,transposase NA
DBSCAN-SWA_7 595311 : 688506 90 Streptococcus_phage(78.57%) tail,capsid,terminase,transposase,holin,protease,head,portal NA
DBSCAN-SWA_8 717487 : 785724 49 Leptospira_phage(30.0%) transposase,tRNA NA
DBSCAN-SWA_9 810057 : 873343 57 Streptococcus_phage(35.29%) transposase,tRNA NA
DBSCAN-SWA_10 881740 : 938221 44 Leptospira_phage(22.22%) protease,transposase,tRNA NA
DBSCAN-SWA_11 979321 : 1078705 117 Streptococcus_phage(64.0%) tail,capsid,tRNA,terminase,integrase,transposase,holin,protease,head,portal attL 988827:988845|attR 1031577:1031595
DBSCAN-SWA_12 1190753 : 1242982 44 Planktothrix_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_13 1413461 : 1452836 34 Streptococcus_phage(36.36%) protease,transposase,tRNA NA
DBSCAN-SWA_14 1456049 : 1523651 70 Streptococcus_phage(75.0%) tail,capsid,terminase,transposase,protease,head,portal NA
DBSCAN-SWA_15 1605621 : 1683895 55 Streptococcus_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_16 1716087 : 1766044 46 Streptococcus_phage(23.08%) protease,transposase,tRNA NA
DBSCAN-SWA_17 1802938 : 1841109 30 Streptococcus_phage(55.56%) transposase,tRNA NA
DBSCAN-SWA_18 1850945 : 1909415 53 Bacillus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_19 1962622 : 2097413 112 Streptococcus_phage(18.18%) protease,bacteriocin,transposase,tRNA NA
DBSCAN-SWA_20 2113049 : 2168149 44 Streptococcus_phage(33.33%) protease,transposase,tRNA NA
DBSCAN-SWA_21 2191638 : 2288822 97 Streptococcus_phage(35.29%) protease,transposase,tRNA,integrase attL 2250066:2250082|attR 2289546:2289562
DBSCAN-SWA_22 2306571 : 2314583 9 Staphylococcus_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage