CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906473	Corynebacterium cystitidis strain NCTC11863 chromosome 1	3 crisprs	DEDDh,csa3,PrimPol,WYL,cas3,csb1gr7,csb2gr5,csb3,cas1,cas2	1	6	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906473_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906473_1

2077719-2078390

Orphan

Consensus_repeat	Method
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CRISPRCasFinder
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CRT
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	PILER-CR

9 spacers

The CRISPR arrays of NZ_LT906473_1

>merge|NZ_LT906473|1|2077719-2078390|CRISPRCasFinder,CRT,PILER-CR
TGATCCATTCGCTTTTAGCGAGACTTCGTCACTGACAAAGGCGTGCCGTATTTAATGCAAAGTGTCAGTCAGTTTAAATTCGCTTTTAGCGAGACTTCGTCACTGACAGGCCGATGATCCCGACATTAACGCTCTCTACAGGTTTCAATTCGCTTTTAGCGAGGCTTCGTCACTGACGAGATTCTCTCGCGCCGCTGGCCGAAGGCTCGTGGTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGACTCATCAAGATTAACCCTGGGGTTTTCGTCGGAAAGTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGACTCCTAGCGGCAGGGTCTTACATTAGCAGCAACTGCTGTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGACCCCGTTAGTCGGGGTATACAGGCTAAAGAAGACAGTGTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGACCAGGAAGCGAATTTATCTGAAGAGATCCTGCATGCAGTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGACCTGTCCGGATTTACCGAAAAAGAAAAGGAGTAAGGTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGACTTCACAAGACCTCCGGCTTCGGCCGGAACATGAGTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC

>NZ_LT906473|1|1|2077719-2078390|CRISPRCasFinder
TGATCCATTCGCTTTTAGCGAGACTTCGTCACTGAC	AAAGGCGTGCCGTATTTAATGCAAAGTGTCAGTCA
GTTTAAATTCGCTTTTAGCGAGACTTCGTCACTGAC	AGGCCGATGATCCCGACATTAACGCTCTCTACAG
GTTTCAATTCGCTTTTAGCGAGGCTTCGTCACTGAC	GAGATTCTCTCGCGCCGCTGGCCGAAGGCTCGTG
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TCATCAAGATTAACCCTGGGGTTTTCGTCGGAAA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TCCTAGCGGCAGGGTCTTACATTAGCAGCAACTGCT
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CCCGTTAGTCGGGGTATACAGGCTAAAGAAGACAGT
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CAGGAAGCGAATTTATCTGAAGAGATCCTGCATGCA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CTGTCCGGATTTACCGAAAAAGAAAAGGAGTAAG
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TTCACAAGACCTCCGGCTTCGGCCGGAACATGA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC

>NZ_LT906473|1|1|2077719-2078390|CRT
TGATCCATTCGCTTTTAGCGAGACTTCGTCACTGAC	AAAGGCGTGCCGTATTTAATGCAAAGTGTCAGTCA
GTTTAAATTCGCTTTTAGCGAGACTTCGTCACTGAC	AGGCCGATGATCCCGACATTAACGCTCTCTACAG
GTTTCAATTCGCTTTTAGCGAGGCTTCGTCACTGAC	GAGATTCTCTCGCGCCGCTGGCCGAAGGCTCGTG
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TCATCAAGATTAACCCTGGGGTTTTCGTCGGAAA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TCCTAGCGGCAGGGTCTTACATTAGCAGCAACTGCT
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CCCGTTAGTCGGGGTATACAGGCTAAAGAAGACAGT
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CAGGAAGCGAATTTATCTGAAGAGATCCTGCATGCA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CTGTCCGGATTTACCGAAAAAGAAAAGGAGTAAG
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TTCACAAGACCTCCGGCTTCGGCCGGAACATGA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC

>NZ_LT906473|1|1|2077790-2078390|PILER-CR
GTTTAAATTCGCTTTTAGCGAGACTTCGTCACTGAC	AGGCCGATGATCCCGACATTAACGCTCTCTACAG
GTTTCAATTCGCTTTTAGCGAGGCTTCGTCACTGAC	GAGATTCTCTCGCGCCGCTGGCCGAAGGCTCGTG
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TCATCAAGATTAACCCTGGGGTTTTCGTCGGAAA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TCCTAGCGGCAGGGTCTTACATTAGCAGCAACTGCT
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CCCGTTAGTCGGGGTATACAGGCTAAAGAAGACAGT
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CAGGAAGCGAATTTATCTGAAGAGATCCTGCATGCA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	CTGTCCGGATTTACCGAAAAAGAAAAGGAGTAAG
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC	TTCACAAGACCTCCGGCTTCGGCCGGAACATGA
GTTTCAATTCGCTTTTAGCGAGACTTCGTCACTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906473.1\|WP_092256417.1\|2076702_2077422_-\|DUF2786-domain-containing-protein	unknown	unknown	gnl\|CDD\|378525
NZ_LT906473.1\|WP_092256409.1\|2074277_2075510_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349914
NZ_LT906473.1\|WP_092256443.1\|2087433_2089029_+\|50S-ribosome-binding-GTPase	unknown	unknown	gnl\|CDD\|206743
NZ_LT906473.1\|WP_092256431.1\|2081761_2082622_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235909
NZ_LT906473.1\|WP_092256425.1\|2080504_2080819_-\|50S-ribosomal-protein-L24	unknown	unknown	gnl\|CDD\|234566
NZ_LT906473.1\|WP_092256395.1\|2069380_2070013_-\|30S-ribosomal-protein-S5	unknown	unknown	gnl\|CDD\|234790
NZ_LT906473.1\|WP_092256411.1\|2075551_2075845_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_092256428.1\|2080823_2081192_-\|50S-ribosomal-protein-L14	unknown	unknown	gnl\|CDD\|180117
NZ_LT906473.1\|WP_092256798.1\|2085815_2087441_+\|GTPase-domain-containing-protein	unknown	unknown	gnl\|CDD\|206739
NZ_LT906473.1\|WP_092256393.1\|2069191_2069377_-\|50S-ribosomal-protein-L30	unknown	unknown	gnl\|CDD\|180163
NZ_LT906473.1\|WP_092256419.1\|2078836_2079625_-\|formate/nitrite-transporter-family-protein	unknown	unknown	gnl\|CDD\|376497
NZ_LT906473.1\|WP_092256399.1\|2070053_2070458_-\|50S-ribosomal-protein-L18	unknown	unknown	gnl\|CDD\|235524
NZ_LT906473.1\|WP_092256402.1\|2070460_2070997_-\|50S-ribosomal-protein-L6	unknown	unknown	gnl\|CDD\|235495
NZ_LT906473.1\|WP_092256405.1\|2071014_2071413_-\|30S-ribosomal-protein-S8	unknown	unknown	gnl\|CDD\|234658
NZ_LT906473.1\|WP_092256434.1\|2082684_2083314_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|225462
NZ_LT906473.1\|WP_092256414.1\|2075844_2076672_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
NZ_LT906473.1\|WP_092256422.1\|2079924_2080503_-\|50S-ribosomal-protein-L5	unknown	unknown	gnl\|CDD\|178791
NZ_LT906473.1\|WP_092256407.1\|2071878_2074185_+\|FdhF/YdeP-family-oxidoreductase	unknown	unknown	gnl\|CDD\|239168
NZ_LT906473.1\|WP_092256440.1\|2083840_2085619_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367526
NZ_LT906473.1\|WP_092256437.1\|2083422_2083779_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647

Protein	Function_ID	Function_description	E-value
NZ_LT906473.1\|WP_092256417.1\|2076702_2077422_-\|DUF2786-domain-containing-protein	gnl\|CDD\|378525	pfam10979, DUF2786, Protein of unknown function (DUF2786). This family of proteins has no known function.	5.13365e-06
NZ_LT906473.1\|WP_092256409.1\|2074277_2075510_+\|amidohydrolase	gnl\|CDD\|349914	cd05664, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, Uncharacterized subfamily of proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as in the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
NZ_LT906473.1\|WP_092256443.1\|2087433_2089029_+\|50S-ribosome-binding-GTPase	gnl\|CDD\|206743	cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain.	4.60133e-24
NZ_LT906473.1\|WP_092256431.1\|2081761_2082622_-\|hypothetical-protein	gnl\|CDD\|235909	PRK07021, fliL, flagellar basal body-associated protein FliL; Reviewed.	0.000454966
NZ_LT906473.1\|WP_092256425.1\|2080504_2080819_-\|50S-ribosomal-protein-L24	gnl\|CDD\|234566	PRK00004, rplX, 50S ribosomal protein L24; Reviewed.	1.06598e-46
NZ_LT906473.1\|WP_092256395.1\|2069380_2070013_-\|30S-ribosomal-protein-S5	gnl\|CDD\|234790	PRK00550, rpsE, 30S ribosomal protein S5; Validated.	5.98318e-94
NZ_LT906473.1\|WP_092256428.1\|2080823_2081192_-\|50S-ribosomal-protein-L14	gnl\|CDD\|180117	PRK05483, rplN, 50S ribosomal protein L14; Validated.	8.19032e-85
NZ_LT906473.1\|WP_092256798.1\|2085815_2087441_+\|GTPase-domain-containing-protein	gnl\|CDD\|206739	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins. The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner.	2.51177e-10
NZ_LT906473.1\|WP_092256393.1\|2069191_2069377_-\|50S-ribosomal-protein-L30	gnl\|CDD\|180163	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed.	2.22988e-22
NZ_LT906473.1\|WP_092256419.1\|2078836_2079625_-\|formate/nitrite-transporter-family-protein	gnl\|CDD\|376497	pfam01226, Form_Nir_trans, Formate/nitrite transporter.	3.49272e-51
NZ_LT906473.1\|WP_092256399.1\|2070053_2070458_-\|50S-ribosomal-protein-L18	gnl\|CDD\|235524	PRK05593, rplR, 50S ribosomal protein L18; Reviewed.	4.25005e-63
NZ_LT906473.1\|WP_092256402.1\|2070460_2070997_-\|50S-ribosomal-protein-L6	gnl\|CDD\|235495	PRK05498, rplF, 50S ribosomal protein L6; Validated.	1.74622e-111
NZ_LT906473.1\|WP_092256405.1\|2071014_2071413_-\|30S-ribosomal-protein-S8	gnl\|CDD\|234658	PRK00136, rpsH, 30S ribosomal protein S8; Validated.	7.95363e-85
NZ_LT906473.1\|WP_092256434.1\|2082684_2083314_-\|NAD(P)H-binding-protein	gnl\|CDD\|225462	COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only].	1.17585e-53
NZ_LT906473.1\|WP_092256414.1\|2075844_2076672_+\|formate-dehydrogenase-accessory-sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	1.48644e-96
NZ_LT906473.1\|WP_092256422.1\|2079924_2080503_-\|50S-ribosomal-protein-L5	gnl\|CDD\|178791	PRK00010, rplE, 50S ribosomal protein L5; Validated.	5.50105e-128
NZ_LT906473.1\|WP_092256407.1\|2071878_2074185_+\|FdhF/YdeP-family-oxidoreductase	gnl\|CDD\|239168	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_LT906473.1\|WP_092256440.1\|2083840_2085619_-\|hypothetical-protein	gnl\|CDD\|367526	pfam03495, Binary_toxB, Clostridial binary toxin B/anthrax toxin PA Ca-binding domain. This domain is a calcium binding domain in the anthrax toxin protective antigen.	0.00144778
NZ_LT906473.1\|WP_092256437.1\|2083422_2083779_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	8.45148e-39

>NZ_LT906473.1|WP_092256417.1|2076702_2077422_-|DUF2786-domain-containing-protein
MNTNSIDKIKQRVQKLLNQAADRSGTPEGDVFYSKAFDLMATYGFDERDLSQADDGDAIAMEEIELSGAYTDMQALLLSALAAALHCEALSVGVRNSTKVEKVMVFGLRRHVKRLVLLFSMLMPQMVAKGLDQPAQPGYSTVVLRRSFMSGFASQVAARLTEAEETVAAASAGYELALIDDATRATEARDNYLEDNNLRATSKQSQRAMNATAYYNGMDAGDLSDLGQTRLRQRPALPS
>NZ_LT906473.1|WP_092256414.1|2075844_2076672_+|formate-dehydrogenase-accessory-sulfurtransferase-FdhD
MGRITRNFAVTKVTLDDDNITTDTRADSVTVEEPLEIRNGGQTLTTTMRTPGNDIELAHGWLYGEGIITAAAQVSEARYCAGATGPDGQNTYNVLELNVFTQQPIGPEFIRLTTTTSACGVCGTTSIEEIMGKAVNPISPIQLDARLVLELPEKLRAGQKQFRKTGGIHAAGAFDVEGNPVVIREDIGRHNAADKVIGHMLMEGLLPAKDHVLVMSSRASFELVQKAVMAGFSGLVAVSAASSLAVELAREANMALVGFARPGRFNLYSGKLRGV
>NZ_LT906473.1|WP_092256411.1|2075551_2075845_+|hypothetical-protein
MAKDSPQEIASTHEWLNQASQTLQISPELTREVLGDLLDLTKNVAHGPSRPAAPVTAFLIGLSTGQAQEAGTSEEDLAAAVRERIAQINATLGEYQD
>NZ_LT906473.1|WP_092256409.1|2074277_2075510_+|amidohydrolase
MTMSSVQTIIGHLDTTRDHREKLYKHFHQHPELSMQEHATADKIRAELDRLGIPHHTVGGTGVVATIANGEGPVVATRGDTDGLPMQEDSGKEYASTATQVDEATGKEVPTAHSCGHDIHIMSLLGALEALNATKDAWSGTFIAVFQPGEETASGARAMVDDGIAELIGTPDVYLGQHVLGTLPLGAVGTRVGPTLSSAFSVKVTIHGKGSHGSMPELSVDPVVTAASIVGKLQTIVSREVAAAETAVVTVGAIHAGSKSNIIPDSAELLINTRAYTDATGKHLREAIERLVQAECHGARCPQEPEFEYYDVYPLTDNDADTTARVREAFNKYFGDQAMDLAPVPASEDFSIIADAVGAPYTFWGLGGFEDYEYAPGNHNPAFAPDIQPTLDRGAEAIIVASSPWLIGDI
>NZ_LT906473.1|WP_092256407.1|2071878_2074185_+|FdhF/YdeP-family-oxidoreductase
MTAPSEVSSEVSRSNPVANKFDNPKVGNQVKGAAGVGGVLHAMQHAVPNHAVGTLLKLNKHGGIDCPGCAWPEPPQSELGIVEFCENGAKAIAQETTGTRVTREFFANTTIQQMREMTDYELDQLGRLQEPMLYDRSRGDEKYHPITWDEAFKLITEQLLKTEPSRAHWYTSGTAVNESAYAFGLLGRRHGSNNLPDCANLCHDSTGVALAKTVGVGKGSVTMHDFHNADLIISVGQNPGTNHPRALSAFHKQKENGGKMIAINPMPETGLMKFKEPQSVKGVLNIPDKLADEYVQVRLDGDRALFQQINRELIRRDALDHKFLDQFCSNVDETIAYLKSLDDAQLERGSGIPMSQVRKIVDYVEKAETVIVAWTLGVTQHKNAVNTIQEMVNFMLLTGNYGKPGAGSAPFRGHSNVQGDRTMGISEKMPEWFLSNLEKEFGFDVPREHGRGSVETAMALRDGESDFFMSLGGNFVRAMSDTTAVEDGMSNNQLTAHMLTKLNATCAWPGEKGLILPVRSRSDYDPQKSGPQMTSVEASDSKISGSRPKRKANSDLDIKSEVDVICSVGRETFGDDFWQPMIDDYGVIRDHIANTIPGFENYNERLERPGGFMLPHAARERIFNTSDGKAQLTINETNTIELEEHQLLLSTVRSHDQYNTISYGLDDRYRGVRGGRRVLFINKVDLDKRGLKDGDLVDVVSVYESGERRAENFRLVEYDHARDCVSGYFPELNNLVPLEEYAHGSETPTSKSVVVHLEPLGRNAHDMK
>NZ_LT906473.1|WP_092256405.1|2071014_2071413_-|30S-ribosomal-protein-S8
MTMTDPIADMLSRVRNANNAHHDTVSMPSSKLKASIAEILKQEGYIADYTVEDQKVGKTLSLELKYGPSRQASIAGLRRVSKPGLRVYAKSTDLPQVIGGLGVAIISTSQGLLTDREAREKGVGGEVLAYVW
>NZ_LT906473.1|WP_092256402.1|2070460_2070997_-|50S-ribosomal-protein-L6
MSRVGKEPIAIPSGVEVKIDGQDVDVKGPKGSLSWTIPAPITIAVEDNEIVVSRPDDQRENRSLHGLSRSLVNNLVVGVTEGYKINMEIFGVGYRVQMKGKDLEFSLGYSHPILIKAPEGITFAVDGNTKLSIEGIDKQLVGQVAANIRRLRKDDPYKGKGIRYEGEQVRRKVGKTGK
>NZ_LT906473.1|WP_092256399.1|2070053_2070458_-|50S-ribosomal-protein-L18
MSNTAENTKRTPIGKDISSRRREARARRHFRIRKTLRGTPEAPRLVVHRSSRHMHVQVIDDLAGHTLVSASSMEADVRSAEGDKKAKAAKVGQLIAERAKEAGIEQVVFDRAGYKYHGRVAALADAAREGGLKF
>NZ_LT906473.1|WP_092256395.1|2069380_2070013_-|30S-ribosomal-protein-S5
MPGRERRDGGRSAEDQNNKNNRNERGGRGRRDDRRQNDDRDKYIERVVSINRVAKTVKGGRNMSFTALVIVGDGQGMVGVGYGKAKEVPAAIQKGSEEARKNFFRVPMVGGTIPHPVQGEAAAGIVMMRPAAPGTGVIAGGAARPVLECAGVQDILCKSLGSDNALNVVKATVAGLKDLARPEEVAAKRGKSLEEVAPARMLRARAGQEA
>NZ_LT906473.1|WP_092256393.1|2069191_2069377_-|50S-ribosomal-protein-L30
MALKITLKHGKIGTKPQHRANLEALGLRKIGQSVVKKDNAATRGQILVVRHLVTVEEVAGE
>NZ_LT906473.1|WP_092256419.1|2078836_2079625_-|formate/nitrite-transporter-family-protein
MALNDIAEASVNKKIELLDNDKPRFGVRSVLAGVYLTLGTAFAGVAGQTAESIAPGHGLGALVFASLFGLGLFSIVILNTDLATGNMMFASYGTTTGQIGWGKAIWFVFVTTFFNLIGALLVGLLMSQSAKLGDMDNTHLISTLSEGKLDKGPWQAFVEAIGANFVVNMAIVAALYAKDFVSKFFVIIPIIAIFVGLGLEHVIANFSLMSITLFANPLPDNFTVGAIALNWLMVWLGNFVGGGLLIGGVYAWLNKTKYVYKD
>NZ_LT906473.1|WP_092256422.1|2079924_2080503_-|50S-ribosomal-protein-L5
MADNYTPRLKARYREEIRGKMGEEFGYDNIMQVPGLTKIVVNMGVGDAARDSKVINGALEDLTAITGQKPQLRRAKSSIANFKLREGMPIGAKVTLRGDRMWEFLDRLLTVALPRIRDFRGLSDQQFDGHGNYTFGLTEQTMFYEIDVDKIDRPRGMDITVVTTATNNDEGRALLRHLGFPFKDKDGKMQQA
>NZ_LT906473.1|WP_092256425.1|2080504_2080819_-|50S-ribosomal-protein-L24
MKIKKGDMVQVISGPDKGAQGKVIQAFPKRDKVLVEGVNRIKKHVANSATERGAESGGIVTQEAPIHVSNVMILDSDGTPTRIGYRFDEDGKKVRVAKSNGKDI
>NZ_LT906473.1|WP_092256428.1|2080823_2081192_-|50S-ribosomal-protein-L14
MIQQESRLKVADNTGAREIQCIRVLGGSVRRFAGIGDTIVASVKEAAPGGNAKQGEIVRAVIVRAKKETRRPDGSYISFDENAAVLIKNDNEPRGTRIFGPVARELRDKKFMKIVSLAPEVI
>NZ_LT906473.1|WP_092256431.1|2081761_2082622_-|hypothetical-protein
MKSSSSRALALIIVIVLAAAAIAAVWWWTNREGPSPELRAADEVAATQEAAEKELANVNVTVDTEVKTNAWRGVTSRANVAPDDTEAITAASNFLVSRWSDDPQDPSYFTGWIISENPPTSYQIDPRADNDWIVGLLAEPVHGVSQVNMVVNNADTGAGNRSDRIDLTPMVGWAELAQSDQRIEQIVATYVPYYDAQPYVNFQDEKETGPRLSLQRATPEMVTPALALMAELEAEDDFEQVALVAVRDVDGQTEVEVKFRNDAPSISSERVQELIDEHLPGATLVG
>NZ_LT906473.1|WP_092256434.1|2082684_2083314_-|NAD(P)H-binding-protein
MRVAIIGAAGRTGSLIASEAARRGHEVTAFIRSEKETPAHHVVLKDAREIVAADLSSFDIVVNAVGIWEENELDQHDEVTRALADAIEGTATKLYIVGSAGSLLVDENKGEALWESAMMPAPFKPLASAMAHAFDNLRSRDKVNWIYVSPPLDFQAEGERKGDYIVARDVFTTNDAGESAMTYADFAEALVDIIEQDNLNQERISLLTR
>NZ_LT906473.1|WP_092256437.1|2083422_2083779_+|helix-turn-helix-transcriptional-regulator
MGTDHQDAGAHPPRCPVETCLLVLNGKWKPLIMRELLSGKKRFGELHNGVRGVSQKVLTSNLKEMVVQGIVERTAYAEMPPRVEYELTELGQSLSTVIEAMWAWGENYQQSQAEDSKS
>NZ_LT906473.1|WP_092256440.1|2083840_2085619_-|hypothetical-protein
MEHQQESAQEAPPQEPQDKDSATASSFTAVNRLPLVVVVSAAVLVVALVIGAVVAVANRSEPVFEVVETPTPAPTTSTTVAPVPTSEALPEQWVDTDGDGIPDELEIAGWTTASGEVFRTDPLLADTDGDGLSDGEEAGNIVEGEEYDTIYEGVTNPVKADSDDDGLDDKTELEGWEAADGRTYSTDPMNADTDGDGISDGLEAGTPEEQEDGSLIYQWISNPTKVDSDGDGLDDLRELDAGTDPFAKDTDGDGLRDSREVLHHNTNPLDADTDGDGFDDLYEIQNAEAEDLDPLFYDEKRSREDDARDFARGFLLGDWSEGDSVSWLMGNLMSVGVGAIPVAGWVLSAILDLRDLLANVHHRRWGEAAVNATGVVPYMGDTSVAVAKVTKFLKRFPGQTDKVLTAVAKSRLPEKVQVEIHKTVLGKKWEELKAKGFSDKEILRMQASGGSAISVHFAMLRRGHVKGSSVPRGTWKDAENNLEQIVKPRSRTVETQVSFPTGNCKRVCNPTMRYFDVVADGVAHESKSGYHVYTDALARQIRTDAFAVKEGTIKSAHWHFFPNKDGKTGADPKILDLLDKNNIPYTYHPPKD
>NZ_LT906473.1|WP_092256798.1|2085815_2087441_+|GTPase-domain-containing-protein
MAATTLPTSPEAEAEARAIVAQLDDYILPRLANIDAPLLAVVGGSTGSGKSTLVNAIVGKQVTTAGVIRPTTRQPVLVANPADQEWFNSPHVLPGLAREQGAPAANAEATSLRVTTTDSLDQGLALLDAPDFDSIDDKNRALASQLLAAADLWVFVTTPARYADQLVWNFLNDAAGRNIEVIVILNRVDEDSMATVPDDLRRMMEQAGLGDATMFVVPYTIDFDIFLPDQPIAPIRDHLRHLAGDASARRAMAAKTVEGALRTLLGRVDAVVEQKADNEEFARHLSQAIEAHYQRATKHVIDATSDGKLLRTEVLQRWQDFVGTSDAFRTIERWYSMAVDRIGSFFSGQPAPVQEVETEIESGLHAVIVDAGDTAATRTWSHVGQVAPQLRAEADPKLSSSSDDLSDKAAQLVRDWQTALMEYIQDTAGEKRMRARVLSLGLNVVTVALMLVVFASTAGLTGGEIAIAGGSAVVGQKLLETIFGEETVRRMAKWARDDLDQRLAELYDVEQARYNEVLAPLVTGASSDELRQAAAEVCFDV
>NZ_LT906473.1|WP_092256443.1|2087433_2089029_+|50S-ribosome-binding-GTPase
MFRNKATLNERLEALDRAVELGEGYLTPTEIERLESVAQAGAQRRALSAEHTVVGFFGATGSGKTSLFNAVVGEDLGKAAARRPTTSSPLAAVWEPRGSEELLDWLEVEDRRTREGEFAPGAGPLILLDLPDFDSVEPVHREITTRLAGQVDVLVWVSDPEKYADSVIHDHFIRPHAAHSAVTLAVLNKADLLKPEDQKTVADSFGQLLREDGLQKVKVIPVSAKTGMGIDTVRKAIARVAAAHSAQTKRIEADLNAVTEPWVASGTIKEVPKSAKKEMDKTLTQAAGAERIGDATAKAYRKRLGERTGWLLTSWITKLRPDPLRRMGLRDEADELGVHRTSLPELDASSKAVANRGVRGYASAVADGLPAAWASAVADTAEDIIDEMPKHLDRAVAGTRLPAQPSKAWGLLTVVQWLALLAALVGVLWYLAVAFIPGALAPLLGNDLVPDVEGWPLPTLLILGGLLLGIVLGLVAAVFGGVIGSGIKRRTKRALRGNVADMSADKVVAPLGTVRDHYVQFQNEIRTAAGV

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Crispr_ID: NZ_LT906473_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906473_2

2642238-2645354

Unclear

Consensus_repeat	Method
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	PILER-CR
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CRISPRCasFinder
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CRT

43 spacers

cas2,cas1,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of NZ_LT906473_2

>merge|NZ_LT906473|2|2642238-2645354|PILER-CR,CRISPRCasFinder,CRT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGGGCAGGTTAGATGGGCCTGGGGCGCAGTCGCATGGTGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGTTATTGACGGCAACACCATCTCTTTTACCGAAGTGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGGGATCTTCCACATCTTCCGGCCAATTCACATCACGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCCCAGCTCCCCAGATGGAGGAAGTGGCAAGTGCGCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCCCATATCAGCAGTGCATGCACCATTTCGCGGTCAAAGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTTTTCAGCAGGTTCTGGTTTCGAAGCGCAATCGGGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGAAGACTGTAATTCACACAGGCAGGGAAAACCACATGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTGTCTCGAACAACCGGGGACGCCTTCGCTACCGGAGTGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGCCAGACGATCGCTGACGGCGACAGGTACGTGGCGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCTCAAGTGTGGGCATGGACGAGGTTTATCTCTTGGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCCTGCAGGCCTTGCGGGCCGGGCGGCCCCGCTGGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGAGATCATCCTTCGATTCGCCGGGGTGTGGAACCAACGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCCGCGTGGCCTATGAGCGATGGAGAGTCGAAGACGATGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCAGACACCCGTGACCATTTATGTGACTCCTCTGACCAGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCGTTCACGCACAAACCCGCTACGCGCGTGTCCCTGGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCATTTCGTACGTTTCCGGCGCGTAGACCTCCCCAGCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCAGGGAATACGCCCCTCCTGGTCCCCCCAGCCGTTGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCAACGGCAGCCACCTCCAACTACCCGGACTCGGCAACGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCAGTGCGGAAGACCTTGAAAAGCTCAACGGAAAGCTGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCACGAACTTACCCATAGATTTGACTCGCGGTTTGATCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTGCGTTGACCGCAGCGATTATGATCGAAGCCGAAGCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTCGAAAATCTGCAGGAGGCGGTTGGTGACGAGCTGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCTAGAACGAGCCGTCACACGCGCCGGGCTGGGAGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTAGTAGCGCGTCGAGTTTTTGGAGCGCGGGGATAAGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGTCAGCAAGTCAGTGACATGCTACCCGTGGTTGAGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTCGAAGTGGTCGAAGATGGGACTGCGTGCGCCTAAGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCCCAACGTCGAGCCACTATGGGCCGACAAGAAAACAGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGTCCCACCGCGACAGGTTCGCCCCGGCTAGCTCGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTTCTTGGATTTTGTCTCGGTCGATGATGACCCTTTGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTTTCGTCAATTGTGACGTTTCTTGCAAGTGCAGCAACGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCCACCCGATCACAACCCCGGTGGAGATTCGTAAGGAGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGGGAACAGGCCTACCGGCGCGCGTCAGCGATTCATCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCGCGCCTCGAGCCCATCAAGTGCCCGGGTCGCCGCAGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGGGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCAACTCACTCGGCTACCATTCATGGTTCATGTCACGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCCAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCCGTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGCTTCACAGCAGTTGATGATCTTGCGCCGGAAGATAAGTTGCCACTGCTTTCGCAGTGGCCTTTCATTAAGGC

>NZ_LT906473|2|2|2642238-2645283|PILER-CR
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGCAGGTTAGATGGGCCTGGGGCGCAGTCGCATGGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTTATTGACGGCAACACCATCTCTTTTACCGAAGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGATCTTCCACATCTTCCGGCCAATTCACATCAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCAGCTCCCCAGATGGAGGAAGTGGCAAGTGCGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCATATCAGCAGTGCATGCACCATTTCGCGGTCAAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTTTCAGCAGGTTCTGGTTTCGAAGCGCAATCGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GAAGACTGTAATTCACACAGGCAGGGAAAACCACATG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGTCTCGAACAACCGGGGACGCCTTCGCTACCGGAGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GCCAGACGATCGCTGACGGCGACAGGTACGTGGCG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CTCAAGTGTGGGCATGGACGAGGTTTATCTCTTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCTGCAGGCCTTGCGGGCCGGGCGGCCCCGCTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GAGATCATCCTTCGATTCGCCGGGGTGTGGAACCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCGCGTGGCCTATGAGCGATGGAGAGTCGAAGACGAT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AGACACCCGTGACCATTTATGTGACTCCTCTGACCA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CGTTCACGCACAAACCCGCTACGCGCGTGTCCCTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ATTTCGTACGTTTCCGGCGCGTAGACCTCCCCAGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGGAATACGCCCCTCCTGGTCCCCCCAGCCGTT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AACGGCAGCCACCTCCAACTACCCGGACTCGGCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AGTGCGGAAGACCTTGAAAAGCTCAACGGAAAGCT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CACGAACTTACCCATAGATTTGACTCGCGGTTTGATC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGCGTTGACCGCAGCGATTATGATCGAAGCCGAAGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TCGAAAATCTGCAGGAGGCGGTTGGTGACGAGCTG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CTAGAACGAGCCGTCACACGCGCCGGGCTGGGA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TAGTAGCGCGTCGAGTTTTTGGAGCGCGGGGATAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTCAGCAAGTCAGTGACATGCTACCCGTGGTTGAG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TCGAAGTGGTCGAAGATGGGACTGCGTGCGCCTAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCAACGTCGAGCCACTATGGGCCGACAAGAAAACA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTCCCACCGCGACAGGTTCGCCCCGGCTAGCTCG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTCTTGGATTTTGTCTCGGTCGATGATGACCCTTTG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTTCGTCAATTGTGACGTTTCTTGCAAGTGCAGCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCACCCGATCACAACCCCGGTGGAGATTCGTAAGGAG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGAACAGGCCTACCGGCGCGCGTCAGCGATTCATC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GCGCCTCGAGCCCATCAAGTGCCCGGGTCGCCGCA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AACTCACTCGGCTACCATTCATGGTTCATGTCAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC

>NZ_LT906473|2|2|2642238-2645354|CRISPRCasFinder
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGCAGGTTAGATGGGCCTGGGGCGCAGTCGCATGGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTTATTGACGGCAACACCATCTCTTTTACCGAAGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGATCTTCCACATCTTCCGGCCAATTCACATCAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCAGCTCCCCAGATGGAGGAAGTGGCAAGTGCGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCATATCAGCAGTGCATGCACCATTTCGCGGTCAAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTTTCAGCAGGTTCTGGTTTCGAAGCGCAATCGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GAAGACTGTAATTCACACAGGCAGGGAAAACCACATG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGTCTCGAACAACCGGGGACGCCTTCGCTACCGGAGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GCCAGACGATCGCTGACGGCGACAGGTACGTGGCG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CTCAAGTGTGGGCATGGACGAGGTTTATCTCTTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCTGCAGGCCTTGCGGGCCGGGCGGCCCCGCTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GAGATCATCCTTCGATTCGCCGGGGTGTGGAACCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCGCGTGGCCTATGAGCGATGGAGAGTCGAAGACGAT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AGACACCCGTGACCATTTATGTGACTCCTCTGACCA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CGTTCACGCACAAACCCGCTACGCGCGTGTCCCTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ATTTCGTACGTTTCCGGCGCGTAGACCTCCCCAGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGGAATACGCCCCTCCTGGTCCCCCCAGCCGTT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AACGGCAGCCACCTCCAACTACCCGGACTCGGCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AGTGCGGAAGACCTTGAAAAGCTCAACGGAAAGCT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CACGAACTTACCCATAGATTTGACTCGCGGTTTGATC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGCGTTGACCGCAGCGATTATGATCGAAGCCGAAGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TCGAAAATCTGCAGGAGGCGGTTGGTGACGAGCTG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CTAGAACGAGCCGTCACACGCGCCGGGCTGGGA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TAGTAGCGCGTCGAGTTTTTGGAGCGCGGGGATAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTCAGCAAGTCAGTGACATGCTACCCGTGGTTGAG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TCGAAGTGGTCGAAGATGGGACTGCGTGCGCCTAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCAACGTCGAGCCACTATGGGCCGACAAGAAAACA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTCCCACCGCGACAGGTTCGCCCCGGCTAGCTCG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTCTTGGATTTTGTCTCGGTCGATGATGACCCTTTG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTTCGTCAATTGTGACGTTTCTTGCAAGTGCAGCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCACCCGATCACAACCCCGGTGGAGATTCGTAAGGAG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGAACAGGCCTACCGGCGCGCGTCAGCGATTCATC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GCGCCTCGAGCCCATCAAGTGCCCGGGTCGCCGCA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AACTCACTCGGCTACCATTCATGGTTCATGTCAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTCACAGCAGTTGATGATCTTGCGCCGGAAGATAA
GTTGCCACTGCTTTCGCAGTGGCCTTTCATTAAGGC

>NZ_LT906473|2|2|2642238-2645354|CRT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGCAGGTTAGATGGGCCTGGGGCGCAGTCGCATGGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTTATTGACGGCAACACCATCTCTTTTACCGAAGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGATCTTCCACATCTTCCGGCCAATTCACATCAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCAGCTCCCCAGATGGAGGAAGTGGCAAGTGCGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCATATCAGCAGTGCATGCACCATTTCGCGGTCAAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTTTCAGCAGGTTCTGGTTTCGAAGCGCAATCGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GAAGACTGTAATTCACACAGGCAGGGAAAACCACATG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGTCTCGAACAACCGGGGACGCCTTCGCTACCGGAGT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GCCAGACGATCGCTGACGGCGACAGGTACGTGGCG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CTCAAGTGTGGGCATGGACGAGGTTTATCTCTTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCTGCAGGCCTTGCGGGCCGGGCGGCCCCGCTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GAGATCATCCTTCGATTCGCCGGGGTGTGGAACCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCGCGTGGCCTATGAGCGATGGAGAGTCGAAGACGAT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AGACACCCGTGACCATTTATGTGACTCCTCTGACCA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CGTTCACGCACAAACCCGCTACGCGCGTGTCCCTGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ATTTCGTACGTTTCCGGCGCGTAGACCTCCCCAGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGGAATACGCCCCTCCTGGTCCCCCCAGCCGTT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AACGGCAGCCACCTCCAACTACCCGGACTCGGCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AGTGCGGAAGACCTTGAAAAGCTCAACGGAAAGCT
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CACGAACTTACCCATAGATTTGACTCGCGGTTTGATC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGCGTTGACCGCAGCGATTATGATCGAAGCCGAAGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TCGAAAATCTGCAGGAGGCGGTTGGTGACGAGCTG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CTAGAACGAGCCGTCACACGCGCCGGGCTGGGA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TAGTAGCGCGTCGAGTTTTTGGAGCGCGGGGATAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTCAGCAAGTCAGTGACATGCTACCCGTGGTTGAG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TCGAAGTGGTCGAAGATGGGACTGCGTGCGCCTAA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TGGTGCAAGAAAGTCGCGGCTGGCGTTGTGTTGC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCCAACGTCGAGCCACTATGGGCCGACAAGAAAACA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GTCCCACCGCGACAGGTTCGCCCCGGCTAGCTCG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTCTTGGATTTTGTCTCGGTCGATGATGACCCTTTG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTTCGTCAATTGTGACGTTTCTTGCAAGTGCAGCAAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CCACCCGATCACAACCCCGGTGGAGATTCGTAAGGAG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GGGAACAGGCCTACCGGCGCGCGTCAGCGATTCATC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	GCGCCTCGAGCCCATCAAGTGCCCGGGTCGCCGCA
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	ACTGACGTGACTGGCACGTCTGCGCATACCTGGATGGG
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	AACTCACTCGGCTACCATTCATGGTTCATGTCAC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	CAGGTAGGAGGGGTGCGGTTCACGTCCAGGGCTTCC
GTCGCCACTGTTTCGGCAGTGGCCTTTCATTGAGGC	TTCACAGCAGTTGATGATCTTGCGCCGGAAGATAA
GTTGCCACTGCTTTCGCAGTGGCCTTTCATTAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906473.1\|WP_092259437.1\|2655008_2655743_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_169872711.1\|2645460_2646882_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341047
NZ_LT906473.1\|WP_092259452.1\|2647818_2648742_-\|pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
NZ_LT906473.1\|WP_092259482.1\|2631646_2631949_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_092259599.1\|2656248_2656563_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
NZ_LT906473.1\|WP_092259470.1\|2636427_2639100_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
NZ_LT906473.1\|WP_169872641.1\|2632024_2632228_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366760
NZ_LT906473.1\|WP_157728478.1\|2632823_2632973_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_092259467.1\|2639099_2640140_+\|hypothetical-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
NZ_LT906473.1\|WP_092259485.1\|2630598_2631336_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_LT906473.1\|WP_092259443.1\|2650415_2651168_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_092259446.1\|2649822_2650350_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226489
NZ_LT906473.1\|WP_092259455.1\|2646901_2647819_-\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238573
NZ_LT906473.1\|WP_092259461.1\|2641737_2642040_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_LT906473.1\|WP_092259464.1\|2640136_2641741_+\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_LT906473.1\|WP_092259601.1\|2653677_2654601_-\|methylenetetrahydrofolate-reductase	unknown	unknown	gnl\|CDD\|273212
NZ_LT906473.1\|WP_092259473.1\|2634874_2636425_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
NZ_LT906473.1\|WP_092259476.1\|2633672_2634878_+\|type-I-U-CRISPR-associated-protein-Cas7	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
NZ_LT906473.1\|WP_092259449.1\|2648858_2649770_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_LT906473.1\|WP_092259440.1\|2651305_2653591_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|235367

Protein	Function_ID	Function_description	E-value
NZ_LT906473.1\|WP_169872711.1\|2645460_2646882_-\|MFS-transporter	gnl\|CDD\|341047	cd17504, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide)-like multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This subfamily is composed of putative multidrug resistance (MDR) transporters including Chlamydia trachomatis antiseptic resistance protein QacA_2, and Serratia sp. DD3 Bmr3. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. This subfamily belongs to the Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters (MMR-like MDR transporter) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.61512e-40
NZ_LT906473.1\|WP_092259452.1\|2647818_2648742_-\|pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	2.38822e-152
NZ_LT906473.1\|WP_092259599.1\|2656248_2656563_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	6.66182e-10
NZ_LT906473.1\|WP_092259470.1\|2636427_2639100_+\|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	1.40598e-89
NZ_LT906473.1\|WP_169872641.1\|2632024_2632228_+\|hypothetical-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	0.000698125
NZ_LT906473.1\|WP_092259467.1\|2639099_2640140_+\|hypothetical-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	1.01761e-91
NZ_LT906473.1\|WP_092259485.1\|2630598_2631336_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.61183e-71
NZ_LT906473.1\|WP_092259446.1\|2649822_2650350_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226489	COG3981, COG3981, Predicted acetyltransferase [General function prediction only].	1.11254e-41
NZ_LT906473.1\|WP_092259455.1\|2646901_2647819_-\|carbohydrate-kinase-family-protein	gnl\|CDD\|238573	cd01168, adenosine_kinase, Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway. .	5.64108e-36
NZ_LT906473.1\|WP_092259461.1\|2641737_2642040_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.30615e-21
NZ_LT906473.1\|WP_092259464.1\|2640136_2641741_+\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.32143e-98
NZ_LT906473.1\|WP_092259601.1\|2653677_2654601_-\|methylenetetrahydrofolate-reductase	gnl\|CDD\|273212	TIGR00676, 510-methylenetetrahydrofolate_reductase., 5,10-methylenetetrahydrofolate reductase, prokaryotic form. The enzyme activities methylenetetrahydrofolate reductase (EC 1.5.1.20) and 5,10-methylenetetrahydrofolate reductase (FADH) (EC 1.7.99.5) differ in that 1.5.1.20 (assigned in many eukaryotes) is defined to use NADP+ as an acceptor, while 1.7.99.5 (assigned in many bacteria) is flexible with respect to the acceptor; both convert 5-methyltetrahydrofolate to 5,10-methylenetetrahydrofolate. From a larger set of proteins assigned as 1.5.1.20 and 1.7.99.5, this model describes the subset of proteins found in bacteria, and currently designated 1.7.99.5. This protein is an FAD-containing flavoprotein. [Amino acid biosynthesis, Aspartate family].	7.19151e-83
NZ_LT906473.1\|WP_092259473.1\|2634874_2636425_+\|type-I-U-CRISPR-associated-protein-Cas5/Cas6	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	1.40971e-71
NZ_LT906473.1\|WP_092259476.1\|2633672_2634878_+\|type-I-U-CRISPR-associated-protein-Cas7	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	1.05993e-31
NZ_LT906473.1\|WP_092259449.1\|2648858_2649770_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.93601e-34
NZ_LT906473.1\|WP_092259440.1\|2651305_2653591_-\|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase	gnl\|CDD\|235367	PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional.	0

>NZ_LT906473.1|WP_092259461.1|2641737_2642040_+|CRISPR-associated-endonuclease-Cas2
MVRDDLRRTLVAYDIPHDRRRTKAAQTLLTYGDRVQYSVFIVDCIPAQLLRLKEQLREIINTDEDSVLFCDIGLVATLQKTNYSYLGLEPKLTSDGPLIF
>NZ_LT906473.1|WP_092259464.1|2640136_2641741_+|CRISPR-associated-endonuclease-Cas4/Cas1
MSTPVDGSVPISLVLHTKFCPRRTWLEANGEVTDTYQMQAGHQGHRRVDDPTSSRPHQLRQLAISDPALGIHGRADVAEPESDGSIHVVEYKTAPLRDVVAATPAHKVQLALQTMCLESAGHRVSRATVRFVDSRLSEEVPITDELRAQAVELVDETRQIIASPTAPAPLIDDARCSKCSHMPVCLPDEKQGVPVRRRINAKKPVGSVIHLTEQGSRCSVKTGRLIVKKRGEELGSVPLGRVDGVTVHGNVDVSSAAIRELSWHQKAVVWCSFSGRVYSWTQPASSPNGLSRSRQHELASDDFLSLAKQMIETKISNQRTLLRRNGDCPRPVEDLAILTQQVDAAISRNELFGIEGAAAKAYFSGFTSMLKHGAKNKYQFDFPGREGRGSIDPINVLLNYAYGMLTSECLRALVSIGLDPHIGVLHSSYRNKPALALDLMEEFRPTIADSAIISLLNRREFPLDGFVSNDLGTRLTKDGRRAVIEAVETRLSTEFNHPVYDYKVTWRRAIEVQARQVLALLEGSQERYFGVRVR
>NZ_LT906473.1|WP_092259467.1|2639099_2640140_+|hypothetical-protein
MYSIQIAGDAQSTLTHFALYGLAGIVQYELNQPVLVSFTSEVDPKAVLETTAGETEVAEAVLHVAKRWSEPGSWAQDTMAYPDKKKSVERSPFSPRIQVIDSRDTWIAHQEFRHRHIDQLEQAGDRLALRLIAGLGEASYWRFQGKDRRPDHGASRWEMKTRNRGEEFIVHRFAPMCSELSSWSSEDILAGITGTQVNDTLGKQKADSRTATGLTTPRATDVALAFCGLVGLGCFPVLHQSTELSVTPAAYPQNVLHTRHMVLPVPAQPITLSRLEAVLVSEALSHASQKYSDERAEDENETLEVTAAQDWLRARGMGALVHFSVLKAGSDSAPERQVLTGRIEAL
>NZ_LT906473.1|WP_092259470.1|2636427_2639100_+|type-I-U-CRISPR-associated-helicase/endonuclease-Cas3
MEKLTIDDFDDFFRALNDDNLPFTWQRDVVEHVLNHGRWPDRITAPTGSGKSFVTDAHVFVNAAQSTYGVRVPRRLHAVVNRRGLVDSQAIRADYIKDRLEAAPADSILGAVAANLRLLRSDSADTPLEVGHLRGNLVNRTLPVDDPTACAIVAATPDMWGSRLLFRGYGSSVHARPRETALISMDSVLILDEAHLNRQLLFTARRVADLQSRYPTIGVPTLQVVETTATASSDPGNEAVSIDVNPDQFDPERDAALSARFFSAKQLELVEFQKWNGRPKNSGLTKLVVEQALELHQDASATVGCIVNHVENATQVARQLQNKGFTTVLLVGRMRPHDVTEVRRQHPHLFASKTDSEVDFVVATQTLEVGVDMDFHSLVTELAPASSLAQRVGRTNRNGRWENSQVRVVVPPTEEVIKNEHPPYSGEDLVNGLRWLHSLSESQSINPAAVRELPPPVSSPKRDLFQRVELSDLGLLARTSEKLLVQPDLSLWLRDSLEPETAMGGVVVREFLPSTDSVALELLKALPPLADEVFPASLNILSQIKQQLVLEPRDRFKAELKDTLKRRLFLYRDNEMTLMDINDHLKPGDIVVLDPGLRFTSENVAVIEPTDTPPAQVPHPDVSRLVIAEHADESDVAWLRDFVGLTPEEATQALNEEGYEGEVVLSASTTERGSSEVVSWFFVKPPASELSDEIRQEWSSSQGQVLLSDHADDVAQRARLMAEKLDVIDELVDVVAEVGLHHDDGKADPRFQIRLGNNSGSVVLAKSKRRSQQQVQLSRARSGLPTGWRHEQLSALMCFDQSTGDGKYRDLVTYLVGTSHGHGRSSFNHVASELLATEDSSLYSNAEQLFSVGDWEHMVSNLNHQFGHHNLAFLEAVQRAADAQVSKEGK
>NZ_LT906473.1|WP_092259473.1|2634874_2636425_+|type-I-U-CRISPR-associated-protein-Cas5/Cas6
MTKLELRVRFPLWIYQAHRDDKSPSWMPDPARLHSAFLNAAAQGSLAEPDGATALKPSEESLTALRWLEANAPDGIEEPQKRWCAPNSGRFAYRKVTSGTNSEIQQRPVSDGVAVNGSYGYLWNDVPEAVASTLTALSEDIGYLGEASSVAIVEPGPVNPTLVKDSSASAFDSGGSFVRIPQRGRTDYLIARHKSYYPEKPPTVAKDRWTASEKPRDREPAEEFLSKVMYRVPAVQPPDTPWSHVLLFQIDRQNVPVKHRVELCVTMHKALISAIGFGASPMVTGKYERQVKQRPANRLAIQYFDSSYVQRHGVHGAALGLMIPRDADDQQLAQIAQALSAISVLWSRNLGRVRVTFDGVSVAADKFWAAPADGHVRLWSADTAIIPETRPVSKKALNRPWTLEDAGLLSLGFVWRDEFEIVGKGEHMYAHLRNQVAGSQARVYKASTLGDAAASYVHRTHTNVPVQPWNGLLSLGNLANAQTLVAIGQSRHLGGGLLVPVDLPRQLLQSLNKQEV
>NZ_LT906473.1|WP_092259476.1|2633672_2634878_+|type-I-U-CRISPR-associated-protein-Cas7
MLNYQDLLDACSRGGASVLTSVTEMEPAAGPHASVAPAKFVERSNSVFAFETRYIDGEPQTIALLDSKQSSLNRAEQAIQQDIDAGFAPISQVPRIVVDYGEGGQLTDMELPHRFADGHIRAGTIDGEPATKNDSYRAVRNSTQGNITALVQTAPAAAVFGGWDSTRATNQLRLPSALVGEVIGVLADQDATGEEQQSKRGGARVDSLAMSVKLTGPQMKELLDAQREELSPTKVGEIEKKIKSEKKGTISASSLGLGGIPPKLESLGGVSCKRIIRTWVLSFAALRQLRFGGSYEQDVAGRALLAAFGLAAMARAEEENYLRANCHLVEKSAPQVILDQRHGESKEFSALTVKEADKLLATAIEEARKLGVVDWSGQVLEVQGNPIVLGGAVEEAEDEQK
>NZ_LT906473.1|WP_157728478.1|2632823_2632973_+|hypothetical-protein
MAGSTHGDHRRKEETRLEKPRAFASRVLAVVTSKLLADLISKSWDWMNS
>NZ_LT906473.1|WP_169872641.1|2632024_2632228_+|hypothetical-protein
MLFEIMEARTGQATAIVSQLGATDWGKVMLNKVTAESPINRILHPSTTVVLNGEENLRQTHQPREDP
>NZ_LT906473.1|WP_092259482.1|2631646_2631949_+|hypothetical-protein
MVTDYRAIMLAVLRGHSYATIQQSYQCSSKTVRLAKAVVHDHGLTEVDIQGLDRQQLAELFPDRRYDRDESYADIDIEGVDSTQADFRGEESWQEVQGQG
>NZ_LT906473.1|WP_092259485.1|2630598_2631336_+|ABC-transporter-ATP-binding-protein
MIKVKDFSLSYGNHEIVKGASFQAHPGEVTALIGRNGAGKTSLLNHIAHPSRRHRNTHITGHIESIGVVSYLNQHIEADLPFTVFETILIGKAVKLGLRTSQEDIDDVNKIVDMLDLHELQHVPIAHLSGGQRQKVFIGQALAKKPEVLLLDEPTAALDIENQYRIMHQIKDLTIEHNLTTLVCLHQIDLVERFADRVIVLHNGSIYKEGNPNEVFTKELFHEVYAVDATMATVDERLLFGFDVS
>NZ_LT906473.1|WP_169872711.1|2645460_2646882_-|MFS-transporter
METTRRTTGTVGLVLALLSAILAFQLNASMLSPVLATMERELNATAVQIGVSQTAFFTAAALFSLVLPRWGDLIGRRKIMIGMLVVTALGSVAAALSVNVYMLFVARIIQGVSGPIVPMALIMLRAQMPDEKRYAFWMAVLTSVNGGIAGVDALAGGWLAANYGFRSVFWTMAVVAVLAIVFVRLGTLETRGEQSQKMDWGGAFALVVSLGAILTAFNELGKLDQANFVLVGILLVVGVVAFFIFWRIESTIEHPLVTTTYMKQRRTWGLLLTTVLTMTGIFAIMNGLIPNLAQSPEFAGLGADTVSWFTLTPYALAGLIMGPIAGKIAGKLGYLSVLRGGLVVTLLGIFFAMYVVTNTTPITLLIVSLWIGISYAGVCNIMLNGLGVVLSPKDNQGYLPGMNSGAFNIGAGLSFALLFMVNTTVGAAQGEAAGYQAGMLTGAIIIVLALVASFLIPSPARVEEEDQQAAAAA
>NZ_LT906473.1|WP_092259455.1|2646901_2647819_-|carbohydrate-kinase-family-protein
MLCVIGDIVQDIVVWLEEEIRHATDTKSTITITRGGSAANVAAFAGPRTPTRFIGCVGDDLAGLALTRDLESLGVDVKMQVRGTTGTIVVQIDQSGERNMFPSRGASGMLQPIDQQWLADVSLLHLTAYSLEVEPTRSSAIAAAQAVRANGGKISFDISSVYTIESLGKQTYLKYMAEIAPDYISANRDEAELLELALNDEPGPGLEQFPQATLLARNGAEATRVFVGGQLQHVVPVEPATTIRDLTGAGDAFNAGFLASVANGETDLEASVLAAHRLARRVLVSPGATEPADVEPSDSDAEKAS
>NZ_LT906473.1|WP_092259452.1|2647818_2648742_-|pseudouridine-5'-phosphate-glycosidase
MNKSQYLFVGDHVQEALDSGSPVVALESTIFTHGLPQPMNVSVALEGEQIVSNSGAVPATIGVYKGQPTVGLTTDQIEEMAAQDKMLKASVRELSYAHVHGLSAGTTIAATAHLAHQAGIDVFATGGLGGVHHGASETFDESADLIAMSQISFVLVSSGAKAILDIPATLERFETLNVPVIGYQTDQYPGFYVADSGHALNRRVDTPEQVAEMLRVQRDLGVKSGINICNPVPMKDQLDPELLDQILSQAWDEAERQGISGQESTPFLLDYIRQATDGKSLEANVALYKNNIALAASIAGSIRRGEK
>NZ_LT906473.1|WP_092259449.1|2648858_2649770_+|LysR-family-transcriptional-regulator
MTNKATCEITLKQLEAFVATVNKGSFSGAAAELSRTQPTISKEIQRLEETLDVQLFDRDQGPATLTEEGHSLIKHARRIVADAHRFVDYAASLATGFPHTIHLACSPSLVNNLIPKLLQKMETTFPHVKLAVKEVGTGEVETVLEEQQADIGVCHCPREIPGFTVVPIGHDPLVLVGTQEIIDLVQDPADLSSLERTPLMSWPRDQHPEYYDELIRCCQQRNLDPLVIVGSAQLTGSKQYLLSQGRAFGVLPRDAIRGFDPSLTFITLGPDATVELGCLVPQRPHSGLVHIYEALRDLHQTLG
>NZ_LT906473.1|WP_092259446.1|2649822_2650350_+|GNAT-family-N-acetyltransferase
MRLTQPNTAFHASWLEAAHELQHADGPNEGHGMSLELADGDLSDPTTFATWVYALNDEAVSPRSGRVPATNWWMVEGSEYLGAIQLRHTLGTEYLRTRGGHVGYTVRPSARGRGLATQALTLVLTRAHEFGLEQVMVTCLEANPASARVIEKAGGIIEGTSDGLIRYWIPTQTKS
>NZ_LT906473.1|WP_092259443.1|2650415_2651168_-|hypothetical-protein
MSLYFHESLSKKLKTGIVAVVAVPALFLAGCSESDDQNSASQTEETAASESSVASESATTSAEESKDKKDKKVDGDLTEPGTTLKLGETATVMTEDYDGNLLTWELAVNEPVEKTVEEVHEAAGQEIGKPEDQIEKFICVPYTMTLKKVEQVGEEKPYSVEQPDINLTDDRGYKANKFLLFGGGEEIVCGIDAVDVMPTALEDVQIDRPYQYAALSYVTSEGGNPATAASFEYDIPSNSDLTPSDPISWR
>NZ_LT906473.1|WP_092259440.1|2651305_2653591_-|5-methyltetrahydropteroyltriglutamate---homocysteine-S-methyltransferase
MTSSFPKATIEGYPRIGRNRELKRALESYWAGRIDQETFLSTTHALRIDTYNHLRDLGLNDDYAIPADVAYYDQVLETALTVGVLEAADLDEEFALCRGTDDRNPLEMTKWFDTNYHYLVPEISENAFDPAPERIVRIVEEARAAGHTVRPYLVGPVTLLALSKPVDFSRLDELTAAYATVFSALHKEGVDWVQVAEPILTADIAGHPDADLARYASEAWTELLGAEDRPHVYLTTPYGSLREGLKALADAKPEALHVDLAPATLEADPDYPRRVAAAVAPETHLVAGLIDGRNIWAGDLRKKEEVLATLRSASTADNGRSEDSVSVSTSVSLQHVPHTLEDEKHLPVDVAGWLSFADEKIGEAQALVAGPIDAAEAFARSDRAVRTRAESTKLHNQAVAERVGKLPEGEVKREPAFEERIKAQQDQLNLPALPTTTIGSFPQTAEIRRARTLHRTGELSDADYNDRLKQEVKDVIELQERLGLDVLVHGEPERNDMVQYFAEQMEGFVTTDNGWVQSYGSRCTRPPIVVGDVSRPEPMTVEWAKYAQSLSDKPVKGMLTGPVTILAWSFPRDDVSLAESADQIGVALADEVRDLEEAGIQVIQIDEPALRELLPLREDARPEYLKWAVRSFRLVSLTAKPTTQIHTHLCYSEFGQIIDAVAGLDADVTSIEAARSRMELLEDIDETFHSEIGPGIWDIHAPRVPSVAEMAELIRAALKNVPTERLWVNPDCGLKTRGYAEVEPSLRNLVLARDEVVAAGV
>NZ_LT906473.1|WP_092259601.1|2653677_2654601_-|methylenetetrahydrofolate-reductase
MPSGVPGTAFRTRRPRRLALSFEVIPPRHDADEAKIDNLLATLNAYKPDYISVTSSARSQWLTGTTKFIKRISANTQARTIAHLACTAGTRDELTEWIYTLLDSGVRGFLALRGDLPEGVSKLDGDHLPHATDLVRLIREIEQQEAFRLAAGNLAVSVACYPSGHAESASPDEDLDVLLAKQRLGADFAITQLFFEAEDFLRFEQRARLAGVRIPLIPGIMPMTSLKRAERMGVLSGISVPDRVYQRMRQASNEAEEFEIGMEMTVDLARTILEAGTGGLHIYTHNNAEVTQDLLNRIGIPTPDALR
>NZ_LT906473.1|WP_092259437.1|2655008_2655743_+|hypothetical-protein
MNPLLLKQGFSLARDFAQRVNEYRQEKQREAYDALVAAADEFNAEFEGDDLARRGQALIDESRREAGKLTQAAHRRLDQAREQLANRAQDASKQVEKRTTNLVDKVSVKKAKRKQRRKTLGRIAAGTGIVAVLAAIAAAVYYFVFGPGKKEEPRTTPPRVEEHSGEKESTLVYSTTTTDGGEFAAGSVDDSVAGSAGPLSEEPAERDAELMDDIDSQLAEFDAEGGQQKPLAADDTYGKHTKEN
>NZ_LT906473.1|WP_092259599.1|2656248_2656563_+|winged-helix-turn-helix-transcriptional-regulator
MEPHEELNRNLKLAEEWAGTFKILGDQTRLKLLSSIHFAGQYQYTVSELAKATEVRVATASAALRAMELNGTVKSQRDGRSIRYGISDDNVHDLLHWIGAGHRH

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Crispr_ID: NZ_LT906473_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906473_3

2956745-2956817

Orphan

Consensus_repeat	Method
CCTCACAAGTGGAGACCTCACAAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906473_3

>merge|NZ_LT906473|3|2956745-2956817|CRISPRCasFinder
CCTCACAAGTGGAGACCTCACAAGTGGAGACCTCACAAGTTCGGTCTCCGGGGGAAAGTGAGACCTCACAAGT

>NZ_LT906473|3|3|2956745-2956817|CRISPRCasFinder
CCTCACAAGTGGAGACCTCACAAGT	GGAGACCTCACAAGTTCGGTCTC
CGGGGGAAAGTGAGACCTCACAAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906473.1\|WP_092258177.1\|2941141_2943079_+\|galactofuranosyltransferase-GlfT2	unknown	unknown	gnl\|CDD\|375472
NZ_LT906473.1\|WP_092258172.1\|2943574_2944567_+\|decaprenyl-phosphate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|237058
NZ_LT906473.1\|WP_092258166.1\|2946461_2947478_+\|esterase-family-protein	unknown	unknown	gnl\|CDD\|223700
NZ_LT906473.1\|WP_092258130.1\|2966834_2967512_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|376672
NZ_LT906473.1\|WP_092258160.1\|2949685_2950156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_092258169.1\|2944582_2946379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_092258133.1\|2964457_2966824_-\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_LT906473.1\|WP_157728496.1\|2961059_2962397_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379114
NZ_LT906473.1\|WP_092258181.1\|2940372_2940969_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906473.1\|WP_092258136.1\|2963417_2964461_-\|UPF0104-family-protein	unknown	unknown	gnl\|CDD\|223469
NZ_LT906473.1\|WP_092258124.1\|2968764_2970597_+\|phosphoenolpyruvate-carboxykinase-(GTP)	unknown	unknown	gnl\|CDD\|235256
NZ_LT906473.1\|WP_092258148.1\|2959684_2960239_-\|protein-L-isoaspartate-O-methyltransferase	unknown	unknown	gnl\|CDD\|225316
NZ_LT906473.1\|WP_092258145.1\|2960286_2960640_-\|DUF3054-domain-containing-protein	unknown	unknown	gnl\|CDD\|378616
NZ_LT906473.1\|WP_092258127.1\|2967513_2968323_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_LT906473.1\|WP_092258157.1\|2950171_2951098_+\|cutinase-family-protein	unknown	unknown	gnl\|CDD\|369775
NZ_LT906473.1\|WP_092258174.1\|2943065_2943578_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|238813
NZ_LT906473.1\|WP_092258163.1\|2947735_2949682_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223700
NZ_LT906473.1\|WP_092258154.1\|2951178_2953026_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|181109
NZ_LT906473.1\|WP_092258375.1\|2957942_2959505_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_LT906473.1\|WP_157728498.1\|2962495_2963101_+\|RloB-domain-containing-protein	unknown	unknown	gnl\|CDD\|379341

Protein	Function_ID	Function_description	E-value
NZ_LT906473.1\|WP_092258177.1\|2941141_2943079_+\|galactofuranosyltransferase-GlfT2	gnl\|CDD\|375472	pfam17994, Glft2_N, Galactofuranosyltransferase 2 N-terminal. This is the N-terminal beta-barrel domain found in the polymerizing galactofuranosyltransferase GlfT2 (Rv3808c). This enzyme synthesizes the bulk of the galactan portion of the mycolyl-arabinogalactan complex, which is the largest component of the mycobacterial cell wall such as in Mycobacterium tuberculosis. The N-terminal domain contains two short helices preceding a 10-stranded beta-sandwich with jelly roll topology.	1.02639e-88
NZ_LT906473.1\|WP_092258172.1\|2943574_2944567_+\|decaprenyl-phosphate-phosphoribosyltransferase	gnl\|CDD\|237058	PRK12324, PRK12324, decaprenyl-phosphate phosphoribosyltransferase.	9.29505e-147
NZ_LT906473.1\|WP_092258166.1\|2946461_2947478_+\|esterase-family-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	1.47501e-57
NZ_LT906473.1\|WP_092258130.1\|2966834_2967512_-\|NYN-domain-containing-protein	gnl\|CDD\|376672	pfam01936, NYN, NYN domain. These domains are found in the eukaryotic proteins typified by the Nedd4-binding protein 1 and the bacterial YacP-like proteins (Nedd4-BP1, YacP nucleases; NYN domains). The NYN domain shares a common protein fold with two other previously characterized groups of nucleases, namely the PIN (PilT N-terminal) and FLAP/5' --> 3' exonuclease superfamilies. These proteins share a common set of 4 acidic conserved residues that are predicted to constitute their active site. Based on the conservation of the acidic residues and structural elements Aravind and colleagues suggest that PIN and NYN domains are likely to bind only a single metal ion, unlike the FLAP/5' --> 3' exonuclease superfamily, which binds two metal ions. Based on conserved gene neighborhoods Aravind and colleagues infer that the bacterial members are likely to be components of the processome/degradsome that process tRNAs or ribosomal RNAs.	4.17247e-05
NZ_LT906473.1\|WP_092258133.1\|2964457_2966824_-\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	1.18912e-109
NZ_LT906473.1\|WP_157728496.1\|2961059_2962397_+\|AAA-family-ATPase	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	3.27583e-20
NZ_LT906473.1\|WP_092258136.1\|2963417_2964461_-\|UPF0104-family-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	3.37806e-23
NZ_LT906473.1\|WP_092258124.1\|2968764_2970597_+\|phosphoenolpyruvate-carboxykinase-(GTP)	gnl\|CDD\|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
NZ_LT906473.1\|WP_092258148.1\|2959684_2960239_-\|protein-L-isoaspartate-O-methyltransferase	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	1.63062e-58
NZ_LT906473.1\|WP_092258145.1\|2960286_2960640_-\|DUF3054-domain-containing-protein	gnl\|CDD\|378616	pfam11255, DUF3054, Protein of unknown function (DUF3054). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.	1.52884e-17
NZ_LT906473.1\|WP_092258127.1\|2967513_2968323_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.28996e-83
NZ_LT906473.1\|WP_092258157.1\|2950171_2951098_+\|cutinase-family-protein	gnl\|CDD\|369775	pfam08237, PE-PPE, PE-PPE domain. This domain is found C terminal to the PE (pfam00934) and PPE (pfam00823) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands.	4.47758e-06
NZ_LT906473.1\|WP_092258174.1\|2943065_2943578_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|238813	cd01610, PAP2_like, PAP2_like proteins, a super-family of histidine phosphatases and vanadium haloperoxidases, includes type 2 phosphatidic acid phosphatase or lipid phosphate phosphatase (LPP), Glucose-6-phosphatase, Phosphatidylglycerophosphatase B and bacterial acid phosphatase, vanadium chloroperoxidases, vanadium bromoperoxidases, and several other mostly uncharacterized subfamilies. Several members of this superfamily have been predicted to be transmembrane proteins.	9.94996e-19
NZ_LT906473.1\|WP_092258163.1\|2947735_2949682_+\|hypothetical-protein	gnl\|CDD\|223700	COG0627, COG0627, Predicted esterase [General function prediction only].	1.11196e-61
NZ_LT906473.1\|WP_092258154.1\|2951178_2953026_+\|AMP-binding-protein	gnl\|CDD\|181109	PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_LT906473.1\|WP_092258375.1\|2957942_2959505_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_LT906473.1\|WP_157728498.1\|2962495_2963101_+\|RloB-domain-containing-protein	gnl\|CDD\|379341	pfam13707, RloB, RloB-like protein. This family includes the RloB protein that is found within a bacterial restriction modification operon. This family includes the AbiLii protein that is found as part of a plasmid encoded phage abortive infection mechanism. Deletion within abiLii abolished the phage resistance. The family includes some proteins annotated as CRISPR Csm2 proteins.	5.60625e-21

>NZ_LT906473.1|WP_092258154.1|2951178_2953026_+|AMP-binding-protein
MDLSKLIAKFYDEDGSITLAPQLTLAGMAEMMYMGDLQLGGGERHCLRYWDYSESRSGTPVDFNRTEINTRIKAVAARLQQVGKMGDRVAILAGNSPEYIFGFVGALYAGQVPVPLYDPEEPGHGDHLKSVLDDAGVKTVLTNTTSATTVREYFSELPSRERPRVVAVDTLPDSLAQSYLNPSATPEGQMAAMMQTEMPIDTTAFLQYTSGSTRNPAGVELTNRSILTNVLQIYAGAKLQMPLRLSTWLPLHHDMGIILTLFVTIMGLEFELMGPRDFVQQPKRWIDQLNKRDDDEDKSIYTVVPNFALELAARYGKPAEGEKLDLSRVDGIIIGSEPVMESAVEAFAGVFGEYGLDRKTLRPSYGLAEASLLLATPQTEQRPVFTRFDRDELANGKAVESADGVPFASNGQPVSNLYFTIVDPETRAEVADGVVGELWAHGENMAVGYLGRDEETTETFKNTLGARLTEGSRVEGAPDNGWMATGDLGVLLDGHLYITGRLKDLVVIAGRNHYPQDIEATVAEASEHVRPDSVAAFAVPGDDVEKLVLFVERADDASADGDAAAEEAIREAVTNIHGIAPEEVRFFAPGEIARSSSGKIARRVNQKRYLEANPR
>NZ_LT906473.1|WP_092258157.1|2950171_2951098_+|cutinase-family-protein
MRKPVTVAAVVIVLAVIGLGAYQFFSTKDQPPADPGPIQTPQAEPAQPDWCPAVEFISAPGTWESSASDDPFNPQANPHSFMLSITQPLQAEYDINHVRVWTLPYTAQFKNIQSPNEMSYDDSRNEGTAKLNGELEFINNTCPGTKFILAGFSQGAVIVGDVATEIGQGNGPVAPDKVLGAIMIADGRRENGVGVNPGVELGGVGAEIALEPVERLVQPIVPGASMRGARVGGFGELHDRAYQICSPNDSVCDAPFDVVNALGRAEELIAANGLHAQYASNSGVIPGTTANQWVIDWTRHAVGQLPAM
>NZ_LT906473.1|WP_092258160.1|2949685_2950156_+|hypothetical-protein
MRRLTLIAMTLAAALSLAACGGATVESEDVTSSLSPAPATVTTSATETTTEDTTTTPVAPRPDQPEDIGAREIGEIPKQEPQYAPEEQGFLDEIAESNVNVADVEAQLIGTARTICRGDTITRDAVAGQLIEQGRTDLDHQEVSTLLDDAAHANLC
>NZ_LT906473.1|WP_092258163.1|2947735_2949682_+|hypothetical-protein
MRSSVHRSPRWARAAQAVSIPTVLALGLSIAPAHAQNLPDMSSTIGSSGLSDGIRPSDPPQRTPIDTEYKPEIAGLPEGVEVDRIEWLTNRRVAVWVQSAAMPDELIQVQILLARDWHSNPGAKFPEVWALDGLRARDDESGWTIETNIEQFYADKNVNVILPVGGESSFYADWRQPDKGKHYKWETFLTKELVPILDNEFRSNQKRAVVGLSMGGTAAMNLAERNPYLFDFVGSFSGYLDTTSRGMPEAITAAQQDAGGYNSTKMWGPLYSQDWIDHDPKLGVEALKDKVVYVSAGNGKDDFGQPDSVAKGAANPAGVGLEVLSRMTTATFVDYAKKADVQPIVKYRPSGVHSWEYWQFEMAEAWPHIANALEIPTEDRGAQCEPIGAIAEATASGIIGSCVNNEYDVADGDGKAQDFRSGTAFWSPKTGAQPLFGAILAKYNELNGPAGWLGFPKTGETATPDGKGRYVHFENGSIYWTHETGAWAIPGDMFGAWGQNNYERGHLGYPTGEAVKIGKGYVQPFQGGFLTRNPDGSHNLVHGAIAAKYGEMNTARSDLGFPTSNEIAIRGGAFQQFEKGNIYWSPETGAHVIYYGDIFDQWGKSGWEQGPLGYPTTDLEEIPTGGLTIDFQNGRIFQINGVVREERK
>NZ_LT906473.1|WP_092258166.1|2946461_2947478_+|esterase-family-protein
MSTLTMVRRRLVALITAVATAAVLMVVGTGTAEAGPRDWLRPDATGHCEWDGVGFWVQRCDVWSPANGRNITVQIQPAARGGNAGFYLLDGLRATEHTNAWLHDVNAAQTYKDSNITLVMPVGGTASFYADWNAPATYDFNNPVRYKWETFLTQELPGYLQHHFGVAPNNNSIAGLSMGGTAAMNLAAKHPNQFRQVLSYSGYLTTTLPGAQTLLRLALLDAGGFNLNAMYGSMISPRRFENDPFHNMDGLGGTDVYVSAGSGIPGIADQGILPQHIASGVALEWIANLSTRMWAVKAQAQGINVAQDYPPNGIHNWNQFGYQLEHTKPRVLDVMNAW
>NZ_LT906473.1|WP_092258169.1|2944582_2946379_+|hypothetical-protein
MEKNARISLIGSAIIAGVLALYGGWTRRWMSDDGLIVLRTVRNIVAGNGPVFNAGERVEANTSTVWQYLIAAVAWVTPARLEDIAMWLALGLTTIAAVVAVVAAAKYWGGVVAPLGIFVYFALPPARDFATSGLEWGLSLAWLATWWALLVWWAHPAGRRFLPPVGYWLALWCGLSWLVRPELALYGGVTGIVLLFAAQNWKQRLGILAVALPVPAAYQIFRMGYYGLLTPHTAVAKSASDSQWGTGFGYAWDLLAPYALYLPLIVVIALLAWLARDVSNRRRTILLLVAGVAFAHIVYVLKVGGDFMHGRMWLLPLFALLLPAMVVPLNKVTGAAVAAVVVWAAVVVVRANPVDWEVYENEELNIVDEREFWSNATRSQPGHPPRYAEDFLSVKVLGPDWEKKLSQAEEEDAAQLTHIIVQREPELYSWLTLPRTEHETDLQAHPTTLYLLNLGMTSMNSELDVRVLDTMGLSTPLAARMPRDPDARVGHDKYLPLEWQVADTATDLSELPDWIDDEVARQARAALRTPEIAELLASSRKPMSWARFWENVKFSLTGGRTLELDDDPAKYLDKETLVKIENGEDPGLTGQQIAWLDR
>NZ_LT906473.1|WP_092258172.1|2943574_2944567_+|decaprenyl-phosphate-phosphoribosyltransferase
MSDHQRQHPEPFLKPEPHTSGVDVNVTRTAPKNLPDAMIKALRPKQWMKNVLVVAAPLAAGLEAFTARTLIDVAIAFVAFCLAASAIYLINDARDVDSDREHPTKRFRPIASGMLPINLAYGMAVVLILAAIGVSFLATDGLALAIVVGVYIALQLGYCFGWKHIPVIDIALVSSGFMLRAMAGGVAAGIELSQWFLLVAAFGSLFMASGKRYAELLLSERTGAKIRKALEGYTPTYLRFVWTLSATAVVMSYSLWAFELSNVTEGSGSIWYQISLVPFVIAILRYAADVDRGHGGAPDEIALQDRVLQILAIAWLACIVMAVYVIPGIA
>NZ_LT906473.1|WP_092258174.1|2943065_2943578_+|phosphatase-PAP2-family-protein
MSKRESDVLVAIQDALYDRPGVKPAARALSVIGEHSLGWLALSGAGAAIVVDKRQRRKWLALGAGAFTSHAASVVLKRIVRRTRPHDPRIKIGVSTPSKLSFPSSHSTSTTAAMVSLADITGSKIPYLGIPVIMISRMVLGVHYPTDTVAGAALGAVCAKAAIEIERKTA
>NZ_LT906473.1|WP_092258177.1|2941141_2943079_+|galactofuranosyltransferase-GlfT2
MKAVDVLQRVLLPRKGEPHDVRMLYLVEAEQNKQRLKWPDRHQVHIPAGAEVSFQTYFNAFPASYWRRWSQLDEVILTMEITGSATVSVYRSKEDGTRISVTNESVAGDNNRVEIPLPLKNFEDGGWLWFDITAETDVVVDNAAWCAGIAPQAQTMPDGSTVGPFAKEVAVGIPTFNRPRDAVNALHALAEDPKVLEAITHVIMPDQGDQHPADEPDFKEAKEALGDRLTIYPQGNLGGSGGYSRIMYEATEAPYILYMDDDIAIEPDSILRAVQAARYAKSPILVGGQMLNLQDRSQLRTTGEAVNGHDFMWGAAPHAVYDHDFAAYPLGFIGTDQQQSDPKFKDSRALHRRIDVDYNGWWMNLFPRVVAEQLGLPLPLFIKWDDTEYALRAKAAGFPTVTWPGAAIWHMAWADKDDAIDWQAYFHLRNRLIVAAMYHEGGFTGIERSIFKSSMKHMMCMEYSTMAIQIEALKDVLAGPAQLFDILESSLPRIQEIRQQYDDAKVIESAAELPAPTGAPGVPTKNVGGRLGKVKKIPWLLKTIKHLRSKEDRSNWDAPQLNLTAEEARWFTLSRVDSATVSTAGGTGVAFRKRDKELAEDLLKQTRALLGEVKTNWDDLKQQYRAAKPDLVARENWKKIFDEQA
>NZ_LT906473.1|WP_092258181.1|2940372_2940969_+|hypothetical-protein
MTVINNIRKDLYSRFAYSIDTEAIDQVLDAALEEHSERAIVQDFVPVLAERDAYNELTLYAAPALHIEFANRSNRAMARAAAALARDLTGRRVTATVAPTHPENSTDEKVEWVMDERGLNAPVDEREHRTMRTPDLVIYLGADEAHDRAGRNASTIDVPDTDGMTVEQVRDVIDALTEKLSATLQKHDIAAESATLPA
>NZ_LT906473.1|WP_092258375.1|2957942_2959505_+|acyl-CoA-carboxylase-subunit-beta
MNDTTTAKTTEQKLADLRARLDKAQDPGSERARKKRDEEGRSTPRQRINALLDEGSFVEIGALGRTPGDKDAVYSDGVVTGYGRIDGRPVAIYAHDKTVYGGSVGVTFGRKVVEVMEFAIKISCPIIGIQDSGGARIQDAVTSLAMYSEIARRQLPQSGRAPQISIMLGKSAGGAVYAPVTTDFVVAVEDQAEMYVTGPAVIKEVTGEEITSAELGGARQQELNGNIQAVLPTEEDTFDYVRDLLSYLPTSTFDETPVVWAPDDEDLDDSELDTFMPDDTNAGYDMQELLPKLTDDGDLLEIQENYAPNLICAFGRIDGHTVGFLANNPMHFAGCIDADAADKGARFIRTCDAYNIPLVFVVDTPGYLPGVEQEKVGLIHRGAKLAFALVEATVPKVTLIVRKAYGGAYAVMGSKNLSGDINLAWPTAQIAVMGSAAAVVMIQGKQLAAIEDEAQRAYMKKVFMDFYDENMTSPYVAAERGYIDHMIQPSETRVALRRALRQLHTKDEIDLPKKHTISPL
>NZ_LT906473.1|WP_092258148.1|2959684_2960239_-|protein-L-isoaspartate-O-methyltransferase
MERISEAMKAVERSGFLPPNARQHAHRDQPLSIGYQQTNSQPTTVRIMLELLDPQPGEKILDVGSGSGWTTALLAHLVGPDGQVEGVEIVEELVAFGQANVQAPNARIRQAGNVLGVPEEAPFDKILVSAEAKRIPQELVDQLAPGGVMVLPVGNTMMRVVKHSDGEISTSQHGGFIFVPLIHD
>NZ_LT906473.1|WP_092258145.1|2960286_2960640_-|DUF3054-domain-containing-protein
MKKTTAIALDLVAIAVFALLARIAHQSEEMPFTFMGFLSTLWPFVVGVVMGWIIVREGRGTRGVWVWLITVVVGLAIWGVRNQAIPHWSFVIVATIMSALLMLGWRGIAGAVGRKRG
>NZ_LT906473.1|WP_157728496.1|2961059_2962397_+|AAA-family-ATPase
MSIRDHQTVSFAPVLDRAKAPEGRWESVTDHVSILMGANASGKTNMLEAMNFGLRAIRESATSWREHDNAVRLPHHPFRLNKDSRREPSFFEWDFVVEGIRYVYGFEMRYDGVQSEWLSRVPAVKWSTVFDREIKEQSSAVSWNSTVIPRTLQRSFSGVSNRELIMSVALRDRVDVLGPVVEQLVHSIGFLPSGSRSEDHRINYLVEQIRHGNFKLDDVSQLMLAADTGIKRVELDETRIPSDILDDIKRILGVLNQAEDAESAQDSEQESRDVAARYSDEQIEEIAYNFIFVHQGSDGEQRLNLAAQSAGTKSWLSIAPVILHALRRGGIVIADELDSSLHNNILFMVVKLFADPDININGAQLWLTSHNTNLLEQRRRLALQPRNYWFAEKDSEGQSVYYCLDDFDKHEEANYEKRYISGRYGAIPDVSPSIVTGLIQEKAIG
>NZ_LT906473.1|WP_157728498.1|2962495_2963101_+|RloB-domain-containing-protein
MTEGEITEPQYFERLQQNLPTDRDYNLVIRPKPKGKGIGTWESSPEAVVKKCLDYKTKDEKEHAEDKSGDRMPYEECFAVVDVDQWDTVASGKTTSVLKRAIELAEENGINLVISNIKFEAWLLWHACDHSETDSKKLDQRCEENKLLDGKKLTTSFPIDKYPEATKRARECHKTDLSKKGPCPSSAVPALLKVVGVIPEI
>NZ_LT906473.1|WP_092258136.1|2963417_2964461_-|UPF0104-family-protein
MKPTLKSWIKWLAPLVVLIVALVAFRDELPFLGEAFYTLLEASPLPLVFAVLTAVGAIVAMAEVMRLLMNSGNDFDVSLKDTTAITLASNAWSTSLPGGPAFSAWLTYRVQRSWGASVALCGWFFVVSSVISTMWLVLIGIGAVLFLGAELNLLTLLATLALTVLVIFAVYWATRNPDTLRRWVSRLPTKLRGSAVKVVDQLATVEMSGRAFAGASAYSLLNRLLDAMTLYFAVWAVVDIAPGFTADQNQTTIMGVALAYVMAKLAGTAQITPGGVGTVEALTAGALVASGMTLVDATAATLIYRIISFALITLIGWIVYLVRYAGKGYMLGRVSPAADTKDAGAKD
>NZ_LT906473.1|WP_092258133.1|2964457_2966824_-|MMPL-family-transporter
MFYRWGQFAFRFRRIIPLVVVVIILAMHFLFGTKLDQRMSQEGWEDPGADSTTAAVIEQETFGRDNSGDVILVVDAGEGARVTDPEIFHAANNAIGELERTYDKQISHVQSYFASPNQQQITDDGRYAFAAIGLEGDGEQTLKDYRVLEEAAKSIELPGNATLEVAGATAVADALDDGMADDIARAELLGVVAVAIILLFVFGGVVAAAMPLIVGILSIIGGLAILSVIASFFQVNIFSQSVITLLGLGLAIDYGLFMVSRFREELDQRCGADSRSRRLSQSELADAVAVTTATAGKTVFFSALMVGVALSGLFMFPQAFLKSVSYGAIAAVVLAAVISVTVLPALFGMLGHNIDKWSVRRTSRTARKIEDTIWFKVPAWAMRNSRQVIVIVAGGLILLTLPIAGIKLGGINEAYLPPTNQVRQTQDEFNEQFPQFRTDPVKLVVTGATNEQLVDVVMQTREVDGLAAPMSPSTQTVDGTTILSAGLADRDNGKYVIDQLRAIDAPEGVNLYVSGTPAMEVESIEALTEKLPWMALYMVAATFILMTLLFGSVILPIKAVIMNVLGLGATIGFLTLMFVNGFGSEFFNFTPGPLMSPVLVLIIAILYGLSTDYEVFLVSRMVEARDKGATTDNAIKYGTAHTGGIITAAALIMIVVAAAFALSEIVMMKYISFGMIFSLALDATLIRLLLVPAVMHELHDDNWWAPAWVKNIYQKIGDGDSPTADTDFHQREQTQREQTQRERSSLSAEPKMEHAKLAATHARSGVSADDDADLIPFSELIKRIERNQ
>NZ_LT906473.1|WP_092258130.1|2966834_2967512_-|NYN-domain-containing-protein
MTDLHEITHPYTPGAAPGPDSLLLVWDAPNLDMGLGAILGGRPTAAYRPRFDAVGRWLIDRAITLNESTEGHIEPEATVFTNVTPGGADVVRPWVEALRNVGFAVFAKPKTDEESDVDADMIAHIQRRRDEGVLQGLVVASADGQNFMELIDELVDEGLPVTVLGFHEHASWAVASDSVDFVDLEDIPGVFREPLPRINLDQLPDDGAWLQPFRPLTALLNNTRQ
>NZ_LT906473.1|WP_092258127.1|2967513_2968323_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MENSSVTHSSDFSNSKSQHTPRDGTGELPTGRPLQTEFNDGLDYPRLGSVSFRRGTLTDNQEALFNEYWPRLGMMLADEQINIDEWFNRPDHPTIVEIGSGTGTSTAAMAPLEADTNIIAVELYKPGLAKLLGSVVRENIHNIRMIRGDGIEVLARMFPEESLTGVRIFFPDPWPKARHNKRRIIQSGPLNLIAKRLKPGGVLHVATDHADYAQWIDELVEVEPLLEYKGWPWDDCPILTDRQVITKFEGKGLNKDHVIREFLWQKRES
>NZ_LT906473.1|WP_092258124.1|2968764_2970597_+|phosphoenolpyruvate-carboxykinase-(GTP)
MTNTIKGLVGELPTDNQQLIDWINDAVEMFQPDDVVFVDGSEEEWDRMANELVEKGTLTRLNEEKRPNSFLARSNPSDVARVESRTFICTENEEDAGPTNNWAPPKAMKEEMTEAFTGAMKGRTMYVVPFCMGPINDPDPKLGVQLTDSAYVVMNMRIMTRMGQEALDKIGTNGDFVPCFHSVGAPLEPGEEDVPWPCNDTKYITHFPETKEIWSYGSGYGGNAILAKKCYALRIASKMAQEEGWMAEHMLILKLTNPEGKVYHITGAFPSACGKTNLAMITPTIPGWKAEVVGDDIAWLHLREDGLYAVNPENGFFGVAPGTSYDSNPIAMKSMEPGNILYTNVGLTDDGDVWWEDIGTEAPDHLIDWKGNDWTPESNEKAAHPNSRYTVPIAQCPTAAPEYDDWKGVKIDAILFGGRRPDTVPLVTETRDWQHATMVGTTLSSGQTAASAEAKVGSLRHDPFAMLPFIGYNVGDYIQHWIDMGKKGGDRMPKVFLVNWFRRGEDGRFLWPGFGENSRVLKWVTERVDGTVGAEETLVGNTARAEDLDLEGLDTPIEDVREALAVNPDEWAANVEDNEQYIKSLGNRVPQEVFDEFNALKERIAKAQGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT906473_3	3.1\|2956770\|23\|NZ_LT906473\|CRISPRCasFinder	2956770-2956792	23	NZ_LT906473.1	2956818-2956840	0	1.0

1. spacer 3.1|2956770|23|NZ_LT906473|CRISPRCasFinder matches to position: 2956818-2956840, mismatch: 0, identity: 1.0

ggagacctcacaagttcggtctc	CRISPR spacer
ggagacctcacaagttcggtctc	Protospacer
***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906473_2	2.11\|2642992\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642992-2643025	34	NC_028694	Propionibacterium phage PA1-14, complete genome	15105-15138	6	0.824
NZ_LT906473_2	2.11\|2642992\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642992-2643025	34	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	833351-833384	7	0.794
NZ_LT906473_2	2.11\|2642992\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642992-2643025	34	NZ_CP009453	Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence	19829-19862	8	0.765
NZ_LT906473_2	2.11\|2642992\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642992-2643025	34	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	371190-371223	9	0.735
NZ_LT906473_2	2.23\|2643853\|33\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2643853-2643885	33	CP003952	Rhodococcus opacus PD630 plasmid 3, complete sequence	51649-51681	9	0.727
NZ_LT906473_2	2.31\|2644419\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2644419-2644452	34	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	1200462-1200495	9	0.735
NZ_LT906473_2	2.31\|2644419\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2644419-2644452	34	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	1198800-1198833	9	0.735
NZ_LT906473_2	2.31\|2644419\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2644419-2644452	34	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	882222-882255	9	0.735
NZ_LT906473_2	2.38\|2644925\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2644925-2644959	35	NZ_CP039925	Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence	96986-97020	9	0.743
NZ_LT906473_1	1.3\|2077896\|34\|NZ_LT906473\|CRISPRCasFinder,CRT,PILER-CR	2077896-2077929	34	NZ_CP035002	Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence	217616-217649	10	0.706
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP027185	Acinetobacter baumannii strain AR_0052 plasmid unnamed1, complete sequence	85578-85612	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	CP033551	Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence	93290-93324	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	CP033546	Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence	83872-83906	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP034093	Acinetobacter baumannii strain A52 plasmid pA52-1, complete sequence	22261-22295	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP038645	Acinetobacter baumannii strain ACN21 plasmid unnamed1, complete sequence	74395-74429	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	CP033517	Acinetobacter baumannii strain 2008S11-069 plasmid p2008S11-069-1, complete sequence	102337-102371	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP016301	Acinetobacter baumannii strain CMC-CR-MDR-Ab66 plasmid pCMCVTAb1-Ab66, complete sequence	34608-34642	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP016296	Acinetobacter baumannii strain CMC-CR-MDR-Ab4 plasmid pCMCVTAb1-Ab4, complete sequence	34608-34642	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP016299	Acinetobacter baumannii strain CMC-MDR-Ab59 plasmid pCMCVTAb1-Ab59, complete sequence	34608-34642	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP024125	Acinetobacter baumannii strain AYP-A2 plasmid pAYP-A2, complete sequence	72628-72662	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP026128	Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence	87713-87747	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP020585	Acinetobacter baumannii strain CBA7 plasmid pCBA7_1, complete sequence	82427-82461	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NC_023031	Acinetobacter baumannii ZW85-1 plasmid ZW85p2, complete sequence	96152-96186	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP027182	Acinetobacter baumannii strain AR_0070 plasmid unnamed4, complete sequence	86940-86974	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_MK386680	Acinetobacter baumannii strain ABAY04001 plasmid pABAY04001_1A, complete sequence	10027-10061	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP018257	Acinetobacter baumannii strain AF-673 plasmid pAF-673, complete sequence	97719-97753	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP010780	Acinetobacter baumannii strain XH386 plasmid pAB386, complete sequence	43484-43518	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP028569	Acinetobacter pittii strain WCHAP005046 plasmid p1_005046, complete sequence	39676-39710	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP023025	Acinetobacter baumannii strain 10324 plasmid pAba10324c, complete sequence	7474-7508	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP041590	Acinetobacter baumannii strain J9 plasmid pJ9-3, complete sequence	14570-14604	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP039519	Acinetobacter baumannii strain TG22653 plasmid pTG22653, complete sequence	6840-6874	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP033864	Acinetobacter sp. FDAARGOS_560 plasmid unnamed2	29649-29683	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP046537	Acinetobacter baumannii strain XL380 plasmid unnamed, complete sequence	89133-89167	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP010398	Acinetobacter baumannii strain 6200 plasmid p6200-114.848kb, complete sequence	9013-9047	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP015484	Acinetobacter baumannii strain ORAB01 plasmid pORAB01-1, complete sequence	14957-14991	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP018333	Acinetobacter baumannii strain A1296 isolate A1296 plasmid pA1296_1, complete sequence	76385-76419	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	CP031744	Acinetobacter baumannii WM99c plasmid pWM99c-2, complete sequence	14957-14991	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP028139	Acinetobacter baumannii strain NCIMB 8209 plasmid pAbNCIMB8209_134, complete sequence	22203-22237	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP050905	Acinetobacter baumannii strain DT-Ab057 plasmid unnamed1, complete sequence	20851-20885	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NC_020524	Acinetobacter baumannii MDR-TJ plasmid pABTJ2, complete sequence	14957-14991	10	0.714
NZ_LT906473_2	2.3\|2642418\|35\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642418-2642452	35	NZ_CP021327	Acinetobacter baumannii strain XH386 plasmid pXH386, complete sequence	77241-77275	10	0.714
NZ_LT906473_2	2.11\|2642992\|34\|NZ_LT906473\|PILER-CR,CRISPRCasFinder,CRT	2642992-2643025	34	NZ_CP020372	Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence	334550-334583	10	0.706
NZ_LT906473_1	1.3\|2077896\|34\|NZ_LT906473\|CRISPRCasFinder,CRT,PILER-CR	2077896-2077929	34	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	968191-968224	11	0.676

1. spacer 2.11|2642992|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NC_028694 (Propionibacterium phage PA1-14, complete genome) position: , mismatch: 6, identity: 0.824

cctgcaggccttgcgggccgggcggccccgctgg	CRISPR spacer
cctgtgtaccttgcgggccgggaggccccgatgg	Protospacer
****.. .************** ******* ***

2. spacer 2.11|2642992|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

cctgcaggccttgcgggccgggc--ggccccgctgg	CRISPR spacer
cctgctggcgttgcgggccgggcgtggctctgcc--	Protospacer
***** *** *************  ***.*.**.

3. spacer 2.11|2642992|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009453 (Sphingopyxis sp. 113P3 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

cctgcaggccttgcgggccgggcggccccgctgg	CRISPR spacer
ccgatcgatcttgcgggctgggcggccgcgctgg	Protospacer
** .. *..*********.******** ******

4. spacer 2.11|2642992|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

cctgcaggccttgcgggccgggcggccccgctgg	CRISPR spacer
cctgcgggccttgcgggccggtcggaagaatcgg	Protospacer
*****.*************** ***    ...**

5. spacer 2.23|2643853|33|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to CP003952 (Rhodococcus opacus PD630 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.727

ctagaacgagccgtcacacgcgccgggctggga	CRISPR spacer
accggacgagccgtcacccgcgccgagctcgac	Protospacer
 . *.************ *******.*** *.

6. spacer 2.31|2644419|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.735

gtcccaccgcgacaggttcgccccggctagctcg	CRISPR spacer
tcgcctcgtcgacaggttcgccgtggctagctct	Protospacer
 . ** *  ************* .*********

7. spacer 2.31|2644419|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.735

gtcccaccgcgacaggttcgccccggctagctcg	CRISPR spacer
tcgcctcgtcgacaggttcgccgtggctagctct	Protospacer
 . ** *  ************* .*********

8. spacer 2.31|2644419|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.735

gtcccaccgcgacaggttcgccccggctagctcg	CRISPR spacer
tcgcctcgtcgacaggttcgccgtggctagctct	Protospacer
 . ** *  ************* .*********

9. spacer 2.38|2644925|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039925 (Agrobacterium tumefaciens strain CFBP7129 plasmid pAtCFBP7129b, complete sequence) position: , mismatch: 9, identity: 0.743

gcgcctcgagcccatcaagtgcccgggtcgccgca	CRISPR spacer
gtgcctcgagcacatcaagcgcccgggcaagagcc	Protospacer
*.********* *******.*******. .  **

10. spacer 1.3|2077896|34|NZ_LT906473|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 10, identity: 0.706

gagattctctcgcgccgctggccgaaggctcgtg	CRISPR spacer
gtaaggtgatcgagccgctggccgaagcctcgtt	Protospacer
* .*  .  *** ************** *****

11. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027185 (Acinetobacter baumannii strain AR_0052 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

12. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to CP033551 (Acinetobacter nosocomialis strain 2014S01-097 plasmid p2014S01-097-1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

13. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to CP033546 (Acinetobacter nosocomialis strain 2014N23-120 plasmid p2014N23-120-1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

14. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034093 (Acinetobacter baumannii strain A52 plasmid pA52-1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

15. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038645 (Acinetobacter baumannii strain ACN21 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

16. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to CP033517 (Acinetobacter baumannii strain 2008S11-069 plasmid p2008S11-069-1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

17. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016301 (Acinetobacter baumannii strain CMC-CR-MDR-Ab66 plasmid pCMCVTAb1-Ab66, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

18. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016296 (Acinetobacter baumannii strain CMC-CR-MDR-Ab4 plasmid pCMCVTAb1-Ab4, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

19. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016299 (Acinetobacter baumannii strain CMC-MDR-Ab59 plasmid pCMCVTAb1-Ab59, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

20. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024125 (Acinetobacter baumannii strain AYP-A2 plasmid pAYP-A2, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

21. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026128 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-1fe1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

22. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020585 (Acinetobacter baumannii strain CBA7 plasmid pCBA7_1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

23. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NC_023031 (Acinetobacter baumannii ZW85-1 plasmid ZW85p2, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

24. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027182 (Acinetobacter baumannii strain AR_0070 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

25. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK386680 (Acinetobacter baumannii strain ABAY04001 plasmid pABAY04001_1A, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

26. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018257 (Acinetobacter baumannii strain AF-673 plasmid pAF-673, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

27. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010780 (Acinetobacter baumannii strain XH386 plasmid pAB386, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

28. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028569 (Acinetobacter pittii strain WCHAP005046 plasmid p1_005046, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

29. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023025 (Acinetobacter baumannii strain 10324 plasmid pAba10324c, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

30. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041590 (Acinetobacter baumannii strain J9 plasmid pJ9-3, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

31. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039519 (Acinetobacter baumannii strain TG22653 plasmid pTG22653, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

32. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033864 (Acinetobacter sp. FDAARGOS_560 plasmid unnamed2) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

33. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046537 (Acinetobacter baumannii strain XL380 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

34. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010398 (Acinetobacter baumannii strain 6200 plasmid p6200-114.848kb, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

35. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015484 (Acinetobacter baumannii strain ORAB01 plasmid pORAB01-1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

36. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018333 (Acinetobacter baumannii strain A1296 isolate A1296 plasmid pA1296_1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

37. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to CP031744 (Acinetobacter baumannii WM99c plasmid pWM99c-2, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

38. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028139 (Acinetobacter baumannii strain NCIMB 8209 plasmid pAbNCIMB8209_134, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

39. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050905 (Acinetobacter baumannii strain DT-Ab057 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

40. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NC_020524 (Acinetobacter baumannii MDR-TJ plasmid pABTJ2, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

41. spacer 2.3|2642418|35|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021327 (Acinetobacter baumannii strain XH386 plasmid pXH386, complete sequence) position: , mismatch: 10, identity: 0.714

gggatcttccacatcttccggccaattcacatcac	CRISPR spacer
ttaaccttccatatcttccggacaattcaccagat	Protospacer
  .*.******.********* ********   *.

42. spacer 2.11|2642992|34|NZ_LT906473|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020372 (Candidatus Thiodictyon syntrophicum strain Cad16T plasmid pTs485, complete sequence) position: , mismatch: 10, identity: 0.706

cctgcaggccttgcgggccgggcggccccgctgg	CRISPR spacer
caaccaggcgttgcgggccaggcggcccaatccg	Protospacer
*   ***** *********.******** ... *

43. spacer 1.3|2077896|34|NZ_LT906473|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 11, identity: 0.676

gagattctctcgcgccgctggccgaaggctcgtg	CRISPR spacer
cctccccgctcgcgccgctggccgacggcacgcc	Protospacer
    ..* ***************** *** **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

550281 : 603095

Mycobacterium_phage(33.33%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_095114639.1\|550281_551625_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-30	35.1
WP_092260899.1\|551939_552191_-	hypothetical protein	NA	NA	NA	NA
WP_092260897.1\|552183_552648_-	ribonuclease	NA	NA	NA	NA
WP_092260895.1\|552712_554602_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.0e-55	35.3
WP_157728349.1\|554909_555836_+	hypothetical protein	NA	NA	NA	NA
WP_092260891.1\|555979_556600_+	nucleoside triphosphate hydrolase	NA	NA	NA	NA
WP_092260889.1\|556647_557067_-	hypothetical protein	NA	NA	NA	NA
WP_092260887.1\|557280_558087_+	lytic murein transglycosylase	NA	NA	NA	NA
WP_092260885.1\|558196_559474_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	1.1e-137	59.1
WP_092260881.1\|560706_562071_+	ATP-binding protein	NA	NA	NA	NA
WP_092260879.1\|562070_562550_+	hypothetical protein	NA	NA	NA	NA
WP_092260877.1\|562639_563257_-	hypothetical protein	NA	NA	NA	NA
WP_157728351.1\|563425_564103_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_092260873.1\|564554_565190_+	septum formation initiator family protein	NA	NA	NA	NA
WP_092260871.1\|565291_565861_+	DUF501 domain-containing protein	NA	NA	NA	NA
WP_092260869.1\|565857_566817_+	Ppx/GppA family phosphatase	NA	NA	NA	NA
WP_092260867.1\|566833_567079_-	hypothetical protein	NA	NA	NA	NA
WP_092260905.1\|567185_568070_+	YwiC-like family protein	NA	NA	NA	NA
WP_092260903.1\|568237_569371_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	2.4e-24	29.3
WP_092260865.1\|569367_570570_-	multidrug effflux MFS transporter	NA	NA	NA	NA
WP_092260863.1\|571051_571891_-	hypothetical protein	NA	NA	NA	NA
WP_092260901.1\|572073_573306_+	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HFY9	Paramecium_bursaria_Chlorella_virus	1.2e-24	25.6
WP_092260861.1\|573327_574755_+	hypothetical protein	NA	NA	NA	NA
WP_092260860.1\|574751_576068_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_092260858.1\|576064_576709_+	hypothetical protein	NA	NA	NA	NA
WP_092260856.1\|576705_578799_+	glycosyltransferase	NA	NA	NA	NA
WP_092260854.1\|578832_579759_+	ABC transporter permease	NA	NA	NA	NA
WP_157728353.1\|579742_580618_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.8e-11	25.8
WP_092260850.1\|580703_581819_-	glycosyltransferase	NA	NA	NA	NA
WP_092260848.1\|581815_582445_-	hypothetical protein	NA	NA	NA	NA
WP_092260846.1\|582456_584505_-	glycosyltransferase	NA	NA	NA	NA
WP_143063483.1\|584504_585098_-	hypothetical protein	NA	NA	NA	NA
WP_157728355.1\|585207_585531_+	hypothetical protein	A0A2P1JR43	Mycobacterium_phage	2.6e-16	52.4
WP_157728503.1\|585613_585850_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	8.2e-12	47.4
WP_157728357.1\|586379_587075_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	6.7e-54	53.8
WP_095114657.1\|587189_587531_-\|transposase	transposase	NA	NA	NA	NA
WP_157728359.1\|587722_588553_+	hypothetical protein	NA	NA	NA	NA
WP_095114646.1\|588773_589391_-	hypothetical protein	NA	NA	NA	NA
WP_095114658.1\|589370_589565_+	hypothetical protein	NA	NA	NA	NA
WP_157728361.1\|589568_590282_-	hypothetical protein	A0A222ZN33	Mycobacterium_phage	2.8e-23	36.3
WP_092261138.1\|590562_591732_-	nucleotide sugar dehydrogenase	M1HZB2	Paramecium_bursaria_Chlorella_virus	7.5e-106	52.6
WP_092261136.1\|592030_592237_+	hypothetical protein	NA	NA	NA	NA
WP_092261134.1\|592724_593294_-	PIN domain-containing protein	NA	NA	NA	NA
WP_092261133.1\|593297_593738_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_092261131.1\|594075_594393_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_092261139.1\|594474_595002_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_092261130.1\|595221_595758_-	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_092261128.1\|596694_597147_+	hypothetical protein	NA	NA	NA	NA
WP_092261127.1\|597252_597444_+	hypothetical protein	NA	NA	NA	NA
WP_092261125.1\|597515_598142_+	DUF4230 domain-containing protein	NA	NA	NA	NA
WP_092261124.1\|598282_600085_+	DUF726 domain-containing protein	NA	NA	NA	NA
WP_092261122.1\|600281_600671_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_157728363.1\|600907_601774_+	hypothetical protein	NA	NA	NA	NA
WP_095114639.1\|601751_603095_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-30	35.1

DBSCAN-SWA_2

2336101 : 2376714

uncultured_Mediterranean_phage(28.57%)

protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169872635.1\|2336101_2336713_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_095114639.1\|2336714_2338058_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-30	35.1
WP_157728445.1\|2338052_2338553_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_092261040.1\|2338685_2339357_-	hypothetical protein	NA	NA	NA	NA
WP_092261042.1\|2339718_2340999_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	1.0e-07	27.5
WP_092261044.1\|2341096_2342623_+	adenylate/guanylate cyclase domain-containing protein	A0A1B1IWY2	uncultured_Mediterranean_phage	4.5e-18	32.4
WP_092261061.1\|2344139_2344790_-	hypothetical protein	NA	NA	NA	NA
WP_092261046.1\|2344880_2347847_-	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	3.8e-98	35.6
WP_092261048.1\|2348135_2348762_+	DedA family protein	NA	NA	NA	NA
WP_157728447.1\|2348784_2349489_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_018581751.1\|2349599_2349803_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.1e-16	63.1
WP_092261052.1\|2350056_2352399_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	4.5e-09	34.3
WP_143063495.1\|2352448_2352751_-	hypothetical protein	NA	NA	NA	NA
WP_143063496.1\|2352988_2353744_-	hypothetical protein	NA	NA	NA	NA
WP_092261057.1\|2353853_2354279_-	hypothetical protein	NA	NA	NA	NA
WP_143063497.1\|2354427_2354862_-	hypothetical protein	NA	NA	NA	NA
WP_095114748.1\|2354932_2356178_+\|transposase	IS3 family transposase	A0A2P1JR32	Mycobacterium_phage	3.7e-71	48.8
WP_092259241.1\|2356500_2356989_-	hypothetical protein	NA	NA	NA	NA
WP_092259238.1\|2357149_2357542_-	hypothetical protein	NA	NA	NA	NA
WP_092259235.1\|2357543_2357927_-	hypothetical protein	NA	NA	NA	NA
WP_092259232.1\|2358080_2358503_+	hypothetical protein	NA	NA	NA	NA
WP_143063445.1\|2358580_2359495_-	hypothetical protein	NA	NA	NA	NA
WP_092259226.1\|2359519_2364841_-	RHS repeat-associated core domain-containing protein	NA	NA	NA	NA
WP_092259223.1\|2364934_2365600_-	WXG100 family type VII secretion target	NA	NA	NA	NA
WP_092259220.1\|2365603_2366305_-	hypothetical protein	NA	NA	NA	NA
WP_092259168.1\|2366451_2366820_-	flp pilus-assembly TadE/G-like family protein	NA	NA	NA	NA
WP_092259165.1\|2366819_2367122_-	hypothetical protein	NA	NA	NA	NA
WP_092259291.1\|2367160_2367325_-	DUF4244 domain-containing protein	NA	NA	NA	NA
WP_092259162.1\|2367416_2368019_-	type II secretion system F family protein	NA	NA	NA	NA
WP_092259288.1\|2368015_2368786_-	type II secretion system F family protein	NA	NA	NA	NA
WP_092259159.1\|2368791_2369955_-	TadA family conjugal transfer-associated ATPase	NA	NA	NA	NA
WP_092259156.1\|2369951_2370989_-	hypothetical protein	NA	NA	NA	NA
WP_157728449.1\|2371219_2371789_+	DUF937 domain-containing protein	NA	NA	NA	NA
WP_092259150.1\|2372131_2372959_+	HAD-IB family hydrolase	NA	NA	NA	NA
WP_092259146.1\|2373060_2373762_-	hypothetical protein	NA	NA	NA	NA
WP_092259143.1\|2373892_2374405_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_092259140.1\|2374525_2375470_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_169872636.1\|2375448_2376714_-\|protease	MarP family serine protease	NA	NA	NA	NA

DBSCAN-SWA_3

2831946 : 2861223

uncultured_virus(28.57%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_092259753.1\|2831946_2832717_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_092259755.1\|2833138_2833906_-	AAA family ATPase	NA	NA	NA	NA
WP_092259807.1\|2833905_2834598_-	AAA family ATPase	NA	NA	NA	NA
WP_092259757.1\|2834818_2836276_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	3.7e-86	40.2
WP_092259759.1\|2836499_2836703_+	hypothetical protein	NA	NA	NA	NA
WP_092259809.1\|2836753_2838070_-	MFS transporter	NA	NA	NA	NA
WP_092259761.1\|2838230_2840585_-	cadmium-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.9e-100	33.6
WP_092259763.1\|2840613_2840814_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_092259765.1\|2840946_2841408_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_143063453.1\|2841404_2842169_-	pirin family protein	NA	NA	NA	NA
WP_092259767.1\|2842305_2842509_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_092259769.1\|2842604_2842973_+	thioredoxin	V9SJ74	Achromobacter_phage	1.8e-10	35.7
WP_092259771.1\|2843162_2843948_+	PspA/IM30 family protein	NA	NA	NA	NA
WP_092259773.1\|2844026_2845268_-	NYN domain-containing protein	NA	NA	NA	NA
WP_092259775.1\|2845483_2845858_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_092259777.1\|2845854_2846688_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.2e-10	27.5
WP_092259779.1\|2846688_2847777_+	hypothetical protein	NA	NA	NA	NA
WP_092259781.1\|2847790_2848633_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.8e-08	25.8
WP_143063454.1\|2848629_2849685_+	hypothetical protein	NA	NA	NA	NA
WP_092261193.1\|2855920_2856127_-\|transposase	transposase	A0A2P1JR32	Mycobacterium_phage	3.9e-10	53.3
WP_092261192.1\|2856234_2856801_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_095114780.1\|2856866_2857808_-	ATP-binding protein	NA	NA	NA	NA
WP_143063513.1\|2857808_2858819_-\|transposase	transposase	NA	NA	NA	NA
WP_095114639.1\|2858885_2860229_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.6e-30	35.1
WP_095114782.1\|2860285_2860894_-	hypothetical protein	NA	NA	NA	NA
WP_143063512.1\|2861025_2861223_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906473

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection