CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906451	Legionella lansingensis strain NCTC12830 chromosome 1	1 crisprs	cas3,DEDDh,csa3,DinG	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906451_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906451_1

2155272-2155378

Orphan

Consensus_repeat	Method
GTCGCTGTTGATGACTTTCTGGTAGATCACTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_LT906451_1

>merge|NZ_LT906451|1|2155272-2155378|CRISPRCasFinder
GTCGCTGTTGATGACTTTCTGGTAGATCACTTGATGTAACGATACGAGCAACGAAACCGCCCTCGAACACGGCAGGTCGCTCTTGATGACTTTCTGGTAGATCACTT

>NZ_LT906451|1|1|2155272-2155378|CRISPRCasFinder
GTCGCTGTTGATGACTTTCTGGTAGATCACTT	GATGTAACGATACGAGCAACGAAACCGCCCTCGAACACGGCAG
GTCGCTCTTGATGACTTTCTGGTAGATCACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906451.1\|WP_028372692.1\|2148227_2148674_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|273918
NZ_LT906451.1\|WP_051546096.1\|2144172_2146794_-\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_LT906451.1\|WP_028372688.1\|2151936_2153385_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_LT906451.1\|WP_028372694.1\|2146936_2147887_-\|elongation-factor-P--(R)-beta-lysine-ligase	unknown	unknown	gnl\|CDD\|273090
NZ_LT906451.1\|WP_081778037.1\|2155914_2156109_+\|DUF1328-domain-containing-protein	unknown	unknown	unknown
NZ_LT906451.1\|WP_028372678.1\|2163679_2166883_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_LT906451.1\|WP_035915132.1\|2148670_2149894_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|99746
NZ_LT906451.1\|WP_028372693.1\|2147886_2148222_-\|SUF-system-Fe-S-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|131990
NZ_LT906451.1\|WP_028372689.1\|2151181_2151934_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|214372
NZ_LT906451.1\|WP_028372682.1\|2158069_2160697_-\|cyanophycin-synthetase	unknown	unknown	gnl\|CDD\|237586
NZ_LT906451.1\|WP_028372684.1\|2156140_2157052_-\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|366471
NZ_LT906451.1\|WP_028372679.1\|2163197_2163671_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_LT906451.1\|WP_028372687.1\|2153368_2153839_-\|SUF-system-Fe-S-cluster-assembly-regulator	unknown	unknown	gnl\|CDD\|131989
NZ_LT906451.1\|WP_028372681.1\|2160944_2162210_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|185300
NZ_LT906451.1\|WP_154660300.1\|2167191_2167959_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|236702
NZ_LT906451.1\|WP_028372686.1\|2154093_2154441_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_LT906451.1\|WP_028372676.1\|2167955_2169020_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|275201
NZ_LT906451.1\|WP_028372690.1\|2149922_2151185_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_LT906451.1\|WP_028372683.1\|2157196_2158057_-\|cyanophycinase	unknown	unknown	gnl\|CDD\|131124
NZ_LT906451.1\|WP_028372680.1\|2162397_2163078_+\|acid-phosphatase	unknown	unknown	gnl\|CDD\|367647

Protein	Function_ID	Function_description	E-value
NZ_LT906451.1\|WP_028372692.1\|2148227_2148674_-\|SUF-system-NifU-family-Fe-S-cluster-assembly-protein	gnl\|CDD\|273918	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family. Three iron-sulfur cluster assembly systems are known so far. ISC is broadly distributed while NIF tends to be associated with nitrogenase in nitrogen-fixing bacteria. The most recently described is SUF, believed to be important to maintain the function during aerobic stress of enzymes with labile Fe-S clusters. It is fairly widely distributed. This family represents one of two different proteins proposed to act as a scaffold on which the Fe-S cluster is built and from which it is transferred. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.77114e-61
NZ_LT906451.1\|WP_051546096.1\|2144172_2146794_-\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.02843e-21
NZ_LT906451.1\|WP_028372688.1\|2151936_2153385_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_LT906451.1\|WP_028372694.1\|2146936_2147887_-\|elongation-factor-P--(R)-beta-lysine-ligase	gnl\|CDD\|273090	TIGR00462, genX, EF-P lysine aminoacylase GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. [Unknown function, General].	1.37842e-138
NZ_LT906451.1\|WP_028372678.1\|2163679_2166883_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_LT906451.1\|WP_035915132.1\|2148670_2149894_-\|cysteine-desulfurase	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	0
NZ_LT906451.1\|WP_028372693.1\|2147886_2148222_-\|SUF-system-Fe-S-cluster-assembly-protein	gnl\|CDD\|131990	TIGR02945, SUF_assoc, FeS assembly SUF system protein. Members of this family belong to the broader pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.53072e-60
NZ_LT906451.1\|WP_028372689.1\|2151181_2151934_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|214372	CHL00131, ycf16, sulfate ABC transporter protein; Validated.	3.92849e-142
NZ_LT906451.1\|WP_028372682.1\|2158069_2160697_-\|cyanophycin-synthetase	gnl\|CDD\|237586	PRK14016, PRK14016, cyanophycin synthetase; Provisional.	0
NZ_LT906451.1\|WP_028372684.1\|2156140_2157052_-\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|366471	pfam01112, Asparaginase_2, Asparaginase.	6.85119e-118
NZ_LT906451.1\|WP_028372679.1\|2163197_2163671_-\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	3.44833e-84
NZ_LT906451.1\|WP_028372687.1\|2153368_2153839_-\|SUF-system-Fe-S-cluster-assembly-regulator	gnl\|CDD\|131989	TIGR02944, conserved_hypothetical_protein, FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.28675e-38
NZ_LT906451.1\|WP_028372681.1\|2160944_2162210_-\|MFS-transporter	gnl\|CDD\|185300	PRK15402, PRK15402, MdfA family multidrug efflux MFS transporter.	2.76754e-154
NZ_LT906451.1\|WP_154660300.1\|2167191_2167959_-\|YdcF-family-protein	gnl\|CDD\|236702	PRK10494, PRK10494, envelope biogenesis factor ElyC.	2.13269e-36
NZ_LT906451.1\|WP_028372686.1\|2154093_2154441_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	5.30464e-43
NZ_LT906451.1\|WP_028372676.1\|2167955_2169020_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|275201	TIGR04408, LptG_lptG, LPS export ABC transporter permease LptG. Members of this family are LptG, one of homologous, two tandem-encoded permease genes of an export ATP transporter for lipopolysaccharide (LPS) assembly in most Gram-negative bacteria. The other permease subunit is LptF (TIGR04407). [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	1.36796e-132
NZ_LT906451.1\|WP_028372690.1\|2149922_2151185_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	3.81101e-95
NZ_LT906451.1\|WP_028372683.1\|2157196_2158057_-\|cyanophycinase	gnl\|CDD\|131124	TIGR02069, cyanophycinase, cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. [Energy metabolism, Other].	3.0035e-65
NZ_LT906451.1\|WP_028372680.1\|2162397_2163078_+\|acid-phosphatase	gnl\|CDD\|367647	pfam03767, Acid_phosphat_B, HAD superfamily, subfamily IIIB (Acid phosphatase). This family proteins includes acid phosphatases and a number of vegetative storage proteins.	5.37763e-40

>NZ_LT906451.1|WP_028372686.1|2154093_2154441_+|endonuclease-domain-containing-protein
MDKLRQFSKTLRLSQMDVEHILWYHLRNRGLLGYKFRRQHILQGHIVDFVCLEKKLIIELDGGQHAEQAVNDTIRTQRLEKDGFQVIRFWNNEVLRNINEVLLVIQNALTREGVY
>NZ_LT906451.1|WP_028372687.1|2153368_2153839_-|SUF-system-Fe-S-cluster-assembly-regulator
MLRISKLADYGTVVMVYLAKHSQVLCNARDIALHTHLTVPTVSKILKRLTATGLLTSVRGVTGGYRLQRPASEISVAQIIYSLEEHRGLTECSLHPNVCSLQSVCRVQGNWRLISQAIETALDSVSLEVLAKPTLQTVEIDRIKQLASGVSHGERQ
>NZ_LT906451.1|WP_028372688.1|2151936_2153385_-|Fe-S-cluster-assembly-protein-SufB
MAKGNEQIHSLLEREYQHGFVTDIEVDTFEPGLNEDIIRRLSAVKGEPEFLLDWRLKAFRHWQTMVQPKWSSVHYPPIDYQTISYYSAPKSKKDAPKSLDEVDPELLRTYEKLGIPLKEQEMLAGVAIDAVFDSVSVATTFKAKLAEVGVIFCPMSEAVHQYPDLVRQYLGSVVPYRDNFYAALNSAVFSDGSFVYIPKGVRCPMELSTYFRINAASTGQFERTLIIADTDSYVSYLEGCTAPMRDENQLHAAVVELIALDGAQIKYSTVQNWYPGDKEGKGGIYNFVTKRGACRGKRSKISWTQIETGSAITWKYPSVILQGDDSVGEFYSVALTNNLQQADTGTKMIHLGKNTRSTIISKGISAGRAHNAYRGLVRIAPTATNARNYTQCDSMLMGSECSAHTFPYIEVKNPTAKVEHEATTSKISEEQLFYCQQRGIDTEDAVSMIVNGFCKQVLKELPMEFAVEATKLLGISLEGAVG
>NZ_LT906451.1|WP_028372689.1|2151181_2151934_-|Fe-S-cluster-assembly-ATPase-SufC
MLTIKQLNVAINAQPILKGINLSIKPGEVHAIMGPNGSGKSTLSKILAGHPAYEVTHGEIHYLDKDLLPLAPEERAQAGIFMSFQYPVEIPGVTNINFLKASVNAVRKVQGKKTLDAIEFLSFIREKCQLLDMDESFLYRSINEGFSGGEKKRNEILQMMALEPKLAILDETDSGLDIDALRIISQGVNAMRSPERAIILVTHYQRLLNYIEPDFIHVLANGRIIKSGDKSLALELEEKGYSWLEEMEQA
>NZ_LT906451.1|WP_028372690.1|2149922_2151185_-|Fe-S-cluster-assembly-protein-SufD
MSEVLDFYQKQAKAGLSTIPWVAELQEKSLRELSYYGFPKRHDEDWKYTIVDALLQHGFAKPAKRDAEIIVQSDMPIKNQIVIQNGQILGVDGITAHLPSGLLVQPLFDALHQHEDKIRPYFDKLLKHEHGFHALNTALVHTGMVIYVPAGIRVEEPIVLSHWQDKEQATHSRHLIILEEGSEVAVCEEYRGAEQCSYFTNTITEVFTAKNAKLTHYKIQREGHIAYHIGQIAVRQAQNSQFDSHSLSLGGKLVRSDIHLQLQEEGGRCLLNGIYVPTDGQHIDHHTIIQHLVGHCHSEQDYKGILAGRSRAVFNGKVIVSKDAQHTEARQQNKNVLLSSQAEIDTKPQLEIFADDVICTHGATVGQLDEEALFYLATRGIDKQEASNYLIQAFAADNLRLVPHQALAEWMRTLLIQQLR
>NZ_LT906451.1|WP_035915132.1|2148670_2149894_-|cysteine-desulfurase
METLDLEAIRNNFPALKQKINDYPLTYLDNAATTQKPQSVIDAIARYYEQDNANVHRGVHALSVRATQQFEGVRDKVQRFINARVARECIFVRGTTEAINLVAQSFVAPRILPGEEILITHMEHHSNIVPWQMVCKKTGALLQVAPISIEGEVLLEEFENKLNENTKFVAINYVSNALGTINPVKKMIEMAHAYGALVLVDGAQATAHLPIDVQDLGCDFYAFSGHKMYGPTGIGILWGKEQLLNDMVPYQGGGEMINYVTMEATEYAPLPHKFEAGTPNIAGAIGLGAAIDYLWSLDMEAIAAYEAHLLDYATLAVQSVKGFNLVGTAKNKVPIVSFVHGKIHAHDIGTILDSAGIAIRSGHHCAMPLMDFFGVAATSRISLAFYNTKEEIDRCVKALHKVKEVFA
>NZ_LT906451.1|WP_028372692.1|2148227_2148674_-|SUF-system-NifU-family-Fe-S-cluster-assembly-protein
MIMELRELYQEIIIDHNRNPRNHHVMSDATAQAQGFNPLCGDKLTLFLKLDGDVVKDVSFVGSGCAISQASASLMTETLIGKTINEAHELFERFHTMVTSGEEQVVSLDKLAVLAGVKAYPARVKCATLAWHTLEAALNKSRAVVSTE
>NZ_LT906451.1|WP_028372693.1|2147886_2148222_-|SUF-system-Fe-S-cluster-assembly-protein
MFGFRKKEDDDVLKEKVITALRTVFDPEIPVNIYDLGLIYDIAINEEQHVHIQMTLTTPGCPVAQTFPGTVEQTVNQVEGVNDCTVELVWDPPWTQERMTEAARLELGIFY
>NZ_LT906451.1|WP_028372694.1|2146936_2147887_-|elongation-factor-P--(R)-beta-lysine-ligase
MQELWQSSASIKTLRKRAQLIAQIRQFFQQRGYLEVETPGMARFGVTDVYLANIKAIFRGETYCLQTSPEYHMKRLLATGSGPIFQLARVFRDDELGRWHNPEFTLLEWYQLGIDHHALMNEVDALLQLILQVKPMLRKTYRDSFLEICDFDPFTVTIPELKKILHRYQLDNVLPPEEGDNDQYLFLLMSHVIEPELGKEQVPVAVYDFPVSQASLAKIHHDVAERFEVYFKGVELANGFHELTDADAQASRFKCELAIRNQKGLPLPAPDDFLLQALEHGLPSCSGVALGVDRLLALALQESSIAGVLAFDFSRA
>NZ_LT906451.1|WP_051546096.1|2144172_2146794_-|ankyrin-repeat-domain-containing-protein
MLTEELLRMAVEEGNVEAFTKIIANSDTESILAVDNKRRTLAHLAARFNQPAILAKLITVVEKFGESGQAILEQTDNEGFTPLECSYLYSAPEITGLLRAKTQLYSGKRALLTGRNRPFEQFFSRLGEEKRIPAAFFAIILCGLPVLESITKFQNENEIISSQTSEGWSLLHFLVFNHKIDVIKYLSDKYKNELNAEIRDHDGNTPFLIAAERYHPDVLNFLLEVGCDIHAKNNQGQNAISIGAKRGQLELVKVLSAKGVDLNSSDENGENALMLAARHGHGDVVAFLRTQGVSLDAKDKEGKSAFQKALDSGHLDIANLLMDTVSLEEKNEALIKAVTTANLANVKWLIDKGASPAIVDAHGDSLLMLAAVGDASFVEYLLSLPETLINHKNNDGDNALFVAIRQGRQKVVECLLKHDFNPPQHNALGQTPLLAAAKSNDAALIELFAKQGYSLEDQDKEGNTALHLAFTSNQLGTAPDYLLSHSPQLVSVTNHRKETPLHCAIIHGHTAYLPELVMHSDLESRDSLGNTPLLTAVAARDFKATELLLKQGADVLAKNDKEETVTNITGLHHFPEDIQRQLLGAYKIDYDEFQYRRRLYFIFGGEKLNEVLAFPQGKVKLGAGTFDEGIGILRTHLKNFLLERHPELSTRFEGLLNALDKVEFTDTPSRILARLESESVTFQATGFTGHLILAALAKQGDGNVKLSLAERGARVSDAPLLHSESKKFSSVRTIIILKEKCQEVVELLHNAKTEPQGVALDILFKQIPEIAGSAYTFQPIYQKKFTDICFYSNPKTGLYEQFINILGETEGRPFYKKFELYMREKELHSYEDFWQEKHSDESLLSNPVIAEARHLIERRAEGSKVDLSTRSSG
>NZ_LT906451.1|WP_081778037.1|2155914_2156109_+|DUF1328-domain-containing-protein
MLWGAFVFLAIAAVTALFSYRNPSTSTYIAKLIFYVSLLIFIVLLFASIFSSAPPKTNTPFLPI
>NZ_LT906451.1|WP_028372684.1|2156140_2157052_-|isoaspartyl-peptidase/L-asparaginase
MMKIAIAVHGGAGDNSAFLQNNMNVTEDGLAQAAQYGYQLLQAGGSALQAVEEAVKLLEDNPLFNAGRGSALNCLGEVEMDASIMDGEKLTAGAVSMVREVKNPVSLARLIMERTKHVLLSGYGALDFAKYHGLLLRPDSYFITEHQYDQYEHLNRRERYEDLLHKKRLGTVGAVALDSKGNLAAATSTGGTSNCLPGRVGDSCLIGAGCYANNSGCAVSGTGDGEYLITGVIAHTISMMVEMKMNVREACDHVLHTRNKASKGEIGVISVDTQGEVGIAFNTEIMKRAWIGLDGQLQVKINR
>NZ_LT906451.1|WP_028372683.1|2157196_2158057_-|cyanophycinase
MKPKGKLLIIGGAEDKIDEPPDIMEQRKEFPRYDILSELLPDSRNKKIELITTGSEVQEEVKKTYQKVFVEMGYSNVGFIPIKEREEARKKNYLTRAEEAGAIFFTGGDQFRLSTILGGTPIIDIIKNRYLTDSTFIVAGTSAGAMVMSSVMITCGGLTEALLYRNLATSSGLGLLTSCIIDTHFIKRGRFSRLAHAIIMNPEQLGIGLGEDTALIIKNGSEAECRGSGMVVIIDGRDIRQTNITQIKEGEAVFVENLKVHILVKGCHFSLATRKLAKPAMSPHFD
>NZ_LT906451.1|WP_028372682.1|2158069_2160697_-|cyanophycin-synthetase
MKILNIKVLRGPNYWSNYRQKLIVIKLDLEQFETLPTNRLPGFAARLKALIPSLYYHQCSPGVEGGFFERLDEGTWLGHVIEHIALELQCLAGMDCGFGRTYSAREYGVYHVIFCYEIEKAGLYAAQAAMNIAKCLAEGKDYHSLAEDIAELNHLYEQEKLGPSTHAIVEEAKKRKIPYARFEDSSLVILGQGRNQKKIWATVSSETNAIAVDIAANKGMTKKLLASSFIPVPAWLTIRDLDELEGAIATIGFPLVIKPINGNHGRGITTNISAKEKAIIGFKFAQEVSSEVIVEKFVEGFDYRFLLINNQVVAVAKRTPAMIVGNGIDSIQTLIDEANKDPKRGHAHENVLTSIKTDENTLAILAEKKLSLHSVLKNGEVLILKDTANLSSGGTAADVTNKVHPYNISLAERIARLVGLDVCGIDIVSKDIGLPLNGSNGAVIEVNAAPGLRMHLAPNQGTGRNVAAPFIDMLYPKGSSVRIPVVAVTGTNGKTTVVRLIAHLAKQAKHYVGFTTTDGIYLDGKLIHRGDCSGPVSAMAILREPTVDFAVLECARGGILRSGLGFDQCDISVITNITNDHLGLDDIHSMEELARVKAVVAHSTCKNGYAILNAEDDLVYAIQDDLHCNIALFALAETPRIKRHCDVGGLAAFIERDAIVISRGKERQILAKVKTIPLTFHGTATLMIKNILPAALAGVISGFTLKDIEQALYNFYPSVEHTPARMNIFDFDDFKIMVDYAHNEDAYVELQKFFSQINCSKKIGIIAASGDRRAEDIQKLGYRSAQMFDEIIIWHYKDSRGRMNQEITDLLLQGIESANFHAQVQVISDEFTAVRYAIATAKQNSFIFYSVDDVFDAVEFILEEKRKFKEETIIA
>NZ_LT906451.1|WP_028372681.1|2160944_2162210_-|MFS-transporter
MSQPLINISRKQALVFAAFLVLYEFLTYIANDMIMPGMVQVVDSFQGPESAIATSLTAYILGGASLQLFLGPISDRYGRRPVMIFGASFFFVCTILIACSNSIEQFLLARFFQGMGLCFIAVIGYATLQEIFAEMDAVRLIAIMANAAILAPLIGPLLGAIFVHYYNWRLIFVIIGAMALFALWGLWRFMPEPVGQTKTNGEEIKPISLAPKMVAINYKNLLFNPSVFFGSVALGLLGLPCIIWIALAPVILINEAKLSVIQYGLWQMPLFAASIAGNWFLQKLTYHGSLKKILLIGSLTSSISLLFVMILPLLMGSDFLWLMPGLLVYFFGLGVATAPLNRLILFSTSVGKGTTSAFMTLVGMCLQAGGIEVANVLYSAHNNIVFAMFCALVGIIYFFVLAVTFMFAKTEPDVAVQGEGG
>NZ_LT906451.1|WP_028372680.1|2162397_2163078_+|acid-phosphatase
MKRTIKTITHILIAITTATFFSCPSFSEPNNLALLKHEIRRYHDSGLYEKELKQVLSQAQDYILKQVKINKHRENPQKLAIVLDIDETSLSNYTKITLRDFTNNHKQIHQEILAANSPAIPATLTLYHAAQKNGVHIFFVSGRVMSELKATRNNLLRAGFANWAGLYLRPDNYHQASIIPFKTRARKSITDQGYTVIASIGDQYSDLEGGYTQKVFKLPNPFYHIS
>NZ_LT906451.1|WP_028372679.1|2163197_2163671_-|transcription-elongation-factor-GreA
MNKHPMTVKGAEALKKELHRLKTVERPRIIEAIATARAHGDLKENAEYHAAREQQSFNEGRIKEIEAKLANAQIVDISKLPNNGKVVFGAIVHVCHIETEARIQYQIVGEDEADIKVNKISYSSPIGRALIGKLVDDTVTVQTPGGMVEYEIVDVEY
>NZ_LT906451.1|WP_028372678.1|2163679_2166883_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIQSILILGAGPIVIGQACEFDYSGTQAVRALKEEGYRVILVNSNPATIMTDPELANATYIEPIQWKEVARIIEKERPDALLPTMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDKAEDREKFRQLMKKIGLDMPRSAIAHSLEEAFQVQAQLGFPAIIRPSFTMGGSGGGIAYNREEFEEICSRGLQLSPTHELLIDESVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQRMRNAAIKVLRAVGVDTGGSNVQFAVNPDDGRMLIVEMNPRVSRSSALASKATGFPIAKIAAKLAVGYTLDELANEITGGKTPASFEPTIDYVVTKIPRFNFDKFPQTSNILTTQMKSVGEVMAIGSNFQESLQKAIRGLEIGRTGLEPLFHKGDMARLRGHLREPTPDRLWYIADAFRNDLSLEEIHQESKVDPWFLAQIQELVLLENTIHGTSLTDISKATMRQFKRRGFSDAYLARLLNDTEEQVRSYRLDLGVVPVYKRIDSCAGEFPSDTAYLYSCYETVCEARPETDKKKIIILGGGPNRIGQGIEFDYCCVHAAMALREAGYQTIMINCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAIEKPTGVIVHYGGQTPLKLARDLELNGVPIIGTSPDAIDQAEDRERFQKLVSELNLHQPVNGTVRSEAEAIELAKRIGYPLVVRPSYVLGGRAMEVVYQEEDLRQYLSNAVAVSNDSPVLLDKFLNDAIEVDIDAICDGEDVLIGGIMEHIEQAGVHSGDSACTLPPFSLSVVVQQDLIEQIRQLALKLGVVGLINAQFAIQADDIYVLEVNPRASRTVPFVSKATGLPLAKIAARCKVGQTLKEQGLAMNYPMPAFYSIKLPVFPFIKFSGVDSILGPEMKSTGEVMGIARRFGQAYAKAQLGAGCNIVKRRRAFVSVRDADKARVGEIVKRLIELGFEIIATRGTALVLQAAGIECRRVFKVAEGRPHVVDFIKNNEIDFIVNTTEGKQAVADSFAIRRNALQHKVSYTTTLSGAEAACLAMKYEDRETVTRLQDLH
>NZ_LT906451.1|WP_154660300.1|2167191_2167959_-|YdcF-family-protein
MMVIRHLLETILNPFFVCLLLFAFLLALLWLCGNTRIVRWGFLLVLVLLLIFSTGWLPSTLTHQLEDRYPVIKKVDPDVHWVVVLSGGQSEVRDRPVNTLLSSASLKRLLEGVRLYRQLPRAKLLLSGGGYGFETPEAQRLAQIASWFAIPATDMILETTSINTADQAKAIKPLVHEERFYLVTSAIHMPRSMKLFLAQGLHPIPAPTDYTYFWDDERWRKMFLPNPYNLFYLSIALHELLGTWWSKLHHDYARS
>NZ_LT906451.1|WP_028372676.1|2167955_2169020_-|LPS-export-ABC-transporter-permease-LptG
MRLLDRYIAKSVLSAIALVTLLLIGLQVFILFVNELDNLGKADFGIVQTAIYVLLQVPYQVYLFFPLASLLGCLIGLGILANNRELVVMRAAGMSIAQITLGVLKAALILIVLVTVIGETVVPRLAHWGNDQKMQALNGGQALRTAYGVWLRNKDDFIAIDTILSSNVLQNVYQFHFDKNHHMRLARKIGKITYANNQWQAYDVAETMIDDDKTVARRLPHMIWDVSVKPNILRVSSNEPDEMTLRELGQYVRAQKQNHQSALNYQLAYWQRLMQPLTTAVMMMLAIPFIFGPLRSSTMGSKIVAGATVGFGFHIVNRFFGPISQVLQLPAEIGAIGPTCLFALLGLYLMRRVK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

578558 : 588484

Micromonas_pusilla_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028372241.1\|578558_580499_+	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	2.4e-149	48.8
WP_028372242.1\|580761_581895_+	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	6.7e-27	36.2
WP_028372243.1\|581990_583130_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	2.0e-50	34.8
WP_028372244.1\|583126_584275_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	6.0e-124	58.8
WP_028372245.1\|584294_585620_+	adenosylhomocysteinase	S4VPF6	Pandoravirus	8.9e-47	30.0
WP_028372246.1\|585813_586632_-	hypothetical protein	NA	NA	NA	NA
WP_028372247.1\|586807_588484_+	S8 family serine peptidase	A0A1B0T6A2	Bacillus_phage	1.9e-14	30.2

DBSCAN-SWA_2

608343 : 720747

Bacillus_phage(18.75%)

protease,transposase,integrase

attL 605488:605518|attR 682706:682805

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
605488:605518	attL	NA	NA	NA	NA
WP_058387169.1\|608343_609306_+\|transposase	IS110 family transposase	NA	NA	NA	NA
605488:605518	attL	NA	NA	NA	NA
WP_028374241.1\|609448_610318_+	YicC family protein	NA	NA	NA	NA
WP_028374240.1\|610324_610954_+	guanylate kinase	U5J9X2	Bacillus_phage	1.9e-15	27.0
WP_028374239.1\|611139_611343_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_028374238.1\|611544_613668_+	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	2.0e-08	34.6
WP_028374237.1\|613667_614051_+	RidA family protein	NA	NA	NA	NA
WP_028374236.1\|614207_614717_+\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_028374235.1\|614858_615338_+	hypothetical protein	NA	NA	NA	NA
WP_095141706.1\|615667_616630_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_028373596.1\|616898_618743_+	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.3e-48	29.9
WP_028373595.1\|618745_619165_+	hypothetical protein	NA	NA	NA	NA
WP_028373594.1\|619350_623274_+	hypothetical protein	NA	NA	NA	NA
WP_028373593.1\|623345_624167_+	glutamate racemase	NA	NA	NA	NA
WP_028373592.1\|624297_625527_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_028373591.1\|626310_627645_+	trigger factor	NA	NA	NA	NA
WP_035915700.1\|627649_628288_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	3.5e-57	59.8
WP_028373589.1\|628544_629813_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.8e-133	55.3
WP_051546182.1\|630078_632529_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.9e-213	50.2
WP_028373587.1\|632654_632930_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	1.2e-14	47.2
WP_028373586.1\|633175_635053_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_028373585.1\|635072_636323_+	hypothetical protein	NA	NA	NA	NA
WP_028373584.1\|636527_637973_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_028373583.1\|638138_638489_+	hypothetical protein	NA	NA	NA	NA
WP_028373582.1\|638526_639312_-	enoyl-ACP reductase	NA	NA	NA	NA
WP_028373581.1\|639313_639976_-	uridine kinase	A0A1V0SAA3	Catovirus	3.2e-29	38.2
WP_028373580.1\|640194_640749_-	Smr/MutS family protein	NA	NA	NA	NA
WP_028373579.1\|641034_641958_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
640825:640855	attR	NA	NA	NA	NA
WP_028373578.1\|641961_643020_+	chorismate synthase	A0A291AU41	Pandoravirus	8.1e-83	45.7
640825:640855	attR	NA	NA	NA	NA
WP_028373577.1\|643034_644057_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_028373576.1\|644758_646180_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
WP_081778090.1\|646194_647034_-	c-type cytochrome	NA	NA	NA	NA
WP_051546180.1\|647155_649084_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_028373575.1\|649823_650759_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_028373574.1\|650807_651479_+	HAD-IIIA family hydrolase	NA	NA	NA	NA
WP_028373573.1\|651475_652054_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_028373572.1\|652488_653220_+	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_051546179.1\|653231_653801_-\|protease	DUF922 domain-containing Zn-dependent protease	NA	NA	NA	NA
WP_028373571.1\|653821_654811_-	NAD(P)-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_028373570.1\|654816_655302_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_028373569.1\|655309_655564_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	1.5e-11	41.9
WP_028373568.1\|655581_656004_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_028373567.1\|656072_656909_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_028373566.1\|656967_658593_-	alkaline phosphatase family protein	NA	NA	NA	NA
WP_028373565.1\|658868_659567_+	hypothetical protein	NA	NA	NA	NA
WP_035915706.1\|659628_659901_-	hypothetical protein	NA	NA	NA	NA
WP_035915695.1\|659903_660812_-	DMT family transporter	NA	NA	NA	NA
WP_028373562.1\|661038_662328_+	glutamate--cysteine ligase	NA	NA	NA	NA
WP_028373561.1\|662354_663308_+	glutathione synthase	NA	NA	NA	NA
WP_095141844.1\|663503_664814_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_028373558.1\|665004_665682_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_028373557.1\|665856_666384_+	peptide deformylase	E3SLL2	Synechococcus_phage	2.3e-14	36.2
WP_035915704.1\|666558_667146_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_028373555.1\|667148_667835_-	MCE family protein	NA	NA	NA	NA
WP_028373554.1\|667902_668658_-	ABC transporter permease	NA	NA	NA	NA
WP_131796085.1\|668829_669957_-	hypothetical protein	NA	NA	NA	NA
WP_095141685.1\|670220_671402_+\|integrase	integrase	NA	NA	NA	NA
WP_095141708.1\|671401_671758_+	hypothetical protein	NA	NA	NA	NA
WP_157737126.1\|672025_672937_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_028374233.1\|673055_674351_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_028374232.1\|674473_674782_+	hypothetical protein	NA	NA	NA	NA
WP_028374231.1\|674954_675338_-	VOC family protein	NA	NA	NA	NA
WP_028374230.1\|675425_676277_+	sterol desaturase family protein	NA	NA	NA	NA
WP_035916279.1\|676291_679999_-	methionine synthase	A0A140XBC7	Dickeya_phage	4.0e-20	71.4
WP_051546283.1\|680046_680505_-	7-cyano-7-deazaguanine reductase	E7DN65	Pneumococcus_phage	1.5e-09	36.8
WP_035916277.1\|680501_681023_-	hypothetical protein	NA	NA	NA	NA
WP_095141712.1\|681118_681484_-	hypothetical protein	NA	NA	NA	NA
WP_095141685.1\|681483_682665_-\|integrase	integrase	NA	NA	NA	NA
WP_028373915.1\|682856_684500_+	hypothetical protein	NA	NA	NA	NA
WP_028373916.1\|684549_685746_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_154660319.1\|685759_685936_-	hypothetical protein	NA	NA	NA	NA
WP_028373918.1\|686152_686611_+	YbaK/EbsC family protein	NA	NA	NA	NA
WP_028373919.1\|688393_689578_+	hypothetical protein	NA	NA	NA	NA
WP_028373920.1\|689677_690625_-	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_065236345.1\|690695_691778_-	DUF2608 domain-containing protein	NA	NA	NA	NA
WP_051546223.1\|691872_696105_-	NAD-dependent ubiquitin ligase	NA	NA	NA	NA
WP_035915934.1\|696540_698364_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.5e-32	28.1
WP_028373922.1\|698538_699282_-	hypothetical protein	NA	NA	NA	NA
WP_028373923.1\|699496_700279_+	DUF4111 domain-containing protein	NA	NA	NA	NA
WP_028373924.1\|700282_701236_+	GNAT family N-acetyltransferase	A0A2K5B2B6	Erysipelothrix_phage	6.0e-37	46.0
WP_035915941.1\|701253_702042_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_028373926.1\|702610_703609_-	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA
WP_131796103.1\|704098_704770_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_028373928.1\|705305_706082_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_028373929.1\|706181_707126_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_028373930.1\|707746_708223_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_028373931.1\|708367_709156_-	hypothetical protein	NA	NA	NA	NA
WP_028373932.1\|709253_709685_-	hypothetical protein	NA	NA	NA	NA
WP_051546224.1\|709725_711498_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.2e-35	40.0
WP_028373934.1\|711783_713106_+	amino acid permease	NA	NA	NA	NA
WP_028373935.1\|713156_714461_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_131796102.1\|714741_715317_-	hypothetical protein	NA	NA	NA	NA
WP_051546225.1\|715681_716386_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
WP_051546226.1\|716517_718464_-	DotI/IcmL/TraM family protein	NA	NA	NA	NA
WP_028373937.1\|718672_719398_+	membrane protein	NA	NA	NA	NA
WP_095141691.1\|719439_720747_-\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

952210 : 959002

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_028374444.1\|952210_952990_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.9e-57	51.2
WP_028374443.1\|952986_954009_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.7e-74	44.4
WP_028374442.1\|953986_954565_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-56	53.2
WP_028374441.1\|954743_955469_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-20	26.0
WP_028374440.1\|955465_955972_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_028374439.1\|955964_956537_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_028374438.1\|956533_957061_-	HAD hydrolase family protein	A0A140XBD6	Dickeya_phage	1.8e-27	50.0
WP_028374437.1\|957071_958034_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.1e-35	33.1
WP_028374436.1\|958204_959002_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	3.0e-21	31.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage