CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT900217	Gordonibacter urolithinfaciens strain DSM 27213T chromosome I	5 crisprs	cas1,cas4,cas7,cas8c,cas5,cas3,RT,WYL,DinG,PD-DExK,csa3	0	9	0	0

1. NZ_LT900217

CRISPR-Cas detection and classification

Crispr_ID: NZ_LT900217_1

• CRISPR_ID: NZ_LT900217_1
• CRISPR_location: 66184-66266
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_LT900217_1

Consensus_repeat	Method
GGACAGGGGGACGGTTCTCTTGTCCC	CRISPRCasFinder

spacers of NZ_LT900217_1

>1.1|66210|31|NZ_LT900217|CRISPRCasFinder
ACAGTATCCGGGACCGCAGGACAGGGGCGCA

CRISPR arrays and Neighbor proteins around NZ_LT900217_1

CRISPR arrays

The CRISPR arrays of NZ_LT900217_1

>merge|NZ_LT900217|1|66184-66266|CRISPRCasFinder
GGACAGGGGGACGGTTCTCTTGTCCCACAGTATCCGGGACCGCAGGACAGGGGCGCAGGACAGAGGGACGGTTCTCTTGTCCC

>NZ_LT900217|1|1|66184-66266|CRISPRCasFinder
GGACAGGGGGACGGTTCTCTTGTCCC	ACAGTATCCGGGACCGCAGGACAGGGGCGCA
GGACAGAGGGACGGTTCTCTTGTCCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT900217.1|WP_096228531.1|58164_59286_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379173
NZ_LT900217.1|WP_087189745.1|73005_73254_-|TIGR03905-family-TSCPD-domain-containing-protein	unknown	unknown	gnl|CDD|378896
NZ_LT900217.1|WP_096226535.1|61949_63851_-|ribonuclease-J	unknown	unknown	gnl|CDD|223668
NZ_LT900217.1|WP_087189751.1|64066_64966_-|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl|CDD|235107
NZ_LT900217.1|WP_096226537.1|66398_68648_-|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl|CDD|236995
NZ_LT900217.1|WP_087189757.1|53283_54342_-|recombinase-RecA	unknown	unknown	gnl|CDD|236476
NZ_LT900217.1|WP_096226539.1|71287_72103_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_LT900217.1|WP_096226534.1|59299_61855_-|DNA-translocase-FtsK-4TM-domain-containing-protein	unknown	unknown	gnl|CDD|224588
NZ_LT900217.1|WP_157780518.1|69448_69904_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_LT900217.1|WP_096226530.1|52475_53282_-|RecX-family-transcriptional-regulator	unknown	unknown	gnl|CDD|234646
NZ_LT900217.1|WP_096226531.1|54627_55899_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl|CDD|334938
NZ_LT900217.1|WP_096226533.1|57245_57743_-|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl|CDD|213038
NZ_LT900217.1|WP_096226540.1|73335_74106_-|DNA-repair-protein-RecO	unknown	unknown	gnl|CDD|234622
NZ_LT900217.1|WP_015538750.1|68920_69208_-|30S-ribosomal-protein-S15	unknown	unknown	gnl|CDD|180170
NZ_LT900217.1|WP_096226536.1|65076_65844_-|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl|CDD|234595
NZ_LT900217.1|WP_096228532.1|72280_73021_+|C39-family-peptidase	unknown	unknown	gnl|CDD|379241
NZ_LT900217.1|WP_096228533.1|74111_75686_-|PASTA-domain-containing-protein	unknown	unknown	gnl|CDD|225372
NZ_LT900217.1|WP_096226532.1|55908_57237_-|30S-ribosomal-protein-S12-methylthiotransferase-RimO	unknown	unknown	gnl|CDD|223694
NZ_LT900217.1|WP_096226541.1|75845_76763_-|GTPase-Era	unknown	unknown	gnl|CDD|234624
NZ_LT900217.1|WP_087189747.1|70072_71224_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT900217.1|WP_096228531.1|58164_59286_-|helix-turn-helix-domain-containing-protein	gnl|CDD|379173	pfam13413, HTH_25, Helix-turn-helix domain. This domain is a helix-turn-helix domain that probably binds to DNA.	9.28427e-22
NZ_LT900217.1|WP_087189745.1|73005_73254_-|TIGR03905-family-TSCPD-domain-containing-protein	gnl|CDD|378896	pfam12637, TSCPD, TSCPD domain. This family of proteins is found in bacteria, archaea and viruses. The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulfur cluster. This domain is found at the C-terminus of some ribonucleoside-diphosphate reductase enzymes.	2.69815e-40
NZ_LT900217.1|WP_096226535.1|61949_63851_-|ribonuclease-J	gnl|CDD|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_LT900217.1|WP_087189751.1|64066_64966_-|4-hydroxy-tetrahydrodipicolinate-synthase	gnl|CDD|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	1.8056e-150
NZ_LT900217.1|WP_096226537.1|66398_68648_-|polyribonucleotide-nucleotidyltransferase	gnl|CDD|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_LT900217.1|WP_087189757.1|53283_54342_-|recombinase-RecA	gnl|CDD|236476	PRK09354, recA, recombinase A; Provisional.	0
NZ_LT900217.1|WP_096226539.1|71287_72103_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.0005e-86
NZ_LT900217.1|WP_096226534.1|59299_61855_-|DNA-translocase-FtsK-4TM-domain-containing-protein	gnl|CDD|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	3.52825e-144
NZ_LT900217.1|WP_157780518.1|69448_69904_-|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.40618e-13
NZ_LT900217.1|WP_096226530.1|52475_53282_-|RecX-family-transcriptional-regulator	gnl|CDD|234646	PRK00117, recX, recombination regulator RecX; Reviewed.	4.00346e-16
NZ_LT900217.1|WP_096226531.1|54627_55899_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl|CDD|334938	pfam02464, CinA, Competence-damaged protein. CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation. This Pfam family consists of putative competence-damaged proteins from the cin operon. Some members of this family have nicotinamide mononucleotide (NMN) deamidase activity.	5.41009e-69
NZ_LT900217.1|WP_096226533.1|57245_57743_-|YajQ-family-cyclic-di-GMP-binding-protein	gnl|CDD|213038	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ. In Pseudomonas syringae, YajQ functions as a host protein involved in the temporal control of bacteriophage Phi6 gene transcription. It has been shown to bind to the phage's major structural core protein P1, most likely activating transcription by acting indirectly on the RNA polymerase. YajQ may remain bound to the phage particles throughout the infection period. Earlier, YajQ was characterized as a putative nucleic acid-binding protein based on the similarity of its (ferredoxin-like) three-dimensional topology with that of RNP-like RNA-binding domains.	1.28649e-80
NZ_LT900217.1|WP_096226540.1|73335_74106_-|DNA-repair-protein-RecO	gnl|CDD|234622	PRK00085, recO, DNA repair protein RecO; Reviewed.	1.76431e-48
NZ_LT900217.1|WP_015538750.1|68920_69208_-|30S-ribosomal-protein-S15	gnl|CDD|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	3.41976e-49
NZ_LT900217.1|WP_096226536.1|65076_65844_-|4-hydroxy-tetrahydrodipicolinate-reductase	gnl|CDD|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	3.14988e-85
NZ_LT900217.1|WP_096228532.1|72280_73021_+|C39-family-peptidase	gnl|CDD|379241	pfam13529, Peptidase_C39_2, Peptidase_C39 like family.	1.95338e-14
NZ_LT900217.1|WP_096228533.1|74111_75686_-|PASTA-domain-containing-protein	gnl|CDD|225372	COG2815, COG2815, Uncharacterized protein conserved in bacteria [Function unknown].	1.96841e-33
NZ_LT900217.1|WP_096226532.1|55908_57237_-|30S-ribosomal-protein-S12-methylthiotransferase-RimO	gnl|CDD|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	4.68346e-136
NZ_LT900217.1|WP_096226541.1|75845_76763_-|GTPase-Era	gnl|CDD|234624	PRK00089, era, GTPase Era; Reviewed.	2.55144e-149
NZ_LT900217.1|WP_087189747.1|70072_71224_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.22085e-45

Protein sequences

>NZ_LT900217.1|WP_096226536.1|65076_65844_-|4-hydroxy-tetrahydrodipicolinate-reductase
MIRVAVSGCAGRMGATVVEAVGAAPDMEVACGIDPHGQSAAFPVFASVAEALGGAEFDVLVDFTQPSVVAGNLRAALPAGVDCVVGTTGLSNAALEELAALAPAGTCLFYAPNFTTGAVLMMEFAKAAAPYFPEAEVMEFHHCNKKDAPSGTAVRTAEIISAARGGRASEAPGRETEIEGAEGARGALVAGVPVHSVRSMGYVASQEVVFGSLGQTLSIRHDSWDRESYMPGVLLGIRSVGGRSGLIVGLENFMA
>NZ_LT900217.1|WP_087189751.1|64066_64966_-|4-hydroxy-tetrahydrodipicolinate-synthase
MSQEPRFGRMIPAMVTPFDENRELDVDKVQALAARLVDGGSDSLIINGTTGESPTVFYPQKIDLFRAVVEAVGDRVPVIANVGDNCTADTVDFAREVAELGVDGFMCVVPYYNKPPQEGIYQHFRTIANAVELPIILYNIPGRCVVNMEAETTLRLAHECANVVAVKEASGKLDQVKAIVEDAPEGFAVYSGDDAATYDIMRLGGAGVISTIGNVAPGRMKEIVDLCAAGDWEAAAAANEALMPLMKGLFETSNPILVKEALKLLGFPVGGVRLPLVDATPEQSERLAAIMREVGVLDA
>NZ_LT900217.1|WP_096226535.1|61949_63851_-|ribonuclease-J
MEQQNNQRSERRSQEQSRNGRGGGNGNGAKGAARGAEKKTRSYKHVQLEHRRPQLSKAGQGQQKQGGQQNARRANFNSPKKDPNATLKIIPLGGLDAIGKNMTVFECKGDMILDDAGLMFPDDDHPGIDLILPDYTYVLENADKLRGIIITHGHEDHTGTLPYLMKDLDRQVPIYGTKMTLGLIEGKFAEHKIKNAKLIEIKPGDQVKLGCFTAEFFAVNHSIPGAVGVFFQSPAGNVLHTGDFKLDQTPIDGVTTDFGALAKFSKAGVDLMMSDSTNAQNPSFTPSEAEVGKELRKIISQARGRVIIASFASHIHRMQQICDAARDNGRKVVVTGRSMIQNTDIARRLGYLNIPDEDIVDAYDLKGIPPEQVVIMCTGSQGEPLSALARIANGEHKTIDLEQGDTVIISATPVPGNEKAVTRVINSLAKIGADVYDKKRAMVHVSGHAGAEELKLVLSIVQPNAFMPVHGEATHLRAHAKLAEATGVPAENVFICENGEGLELSSRGVKRGETVQSGIVFVDGLSVGDTSQDVLDERNALGSQGFASVAAAISSKRKDVVGEVQVEMHGITGGDDDYLVREARTTVKNALKRQLGKGGGQKELKKAARDALLSLLWERTKQRPMAIVNLLEV
>NZ_LT900217.1|WP_096226534.1|59299_61855_-|DNA-translocase-FtsK-4TM-domain-containing-protein
MARQSAPASNKSKPSPGAKPKGKAASPAEKSARKGGGKAAKAAPAPDGHLIDDRTRRDITGVAFAVAAVVLFVAAVMPTNAVVTSFVSTALHLTLGLGAYLLPFFLLVIGASFLIRFDRERVPARVSVGLVMILAAVLVLLALFTPLVPGEEGAPAALFDPVQLSARGGYVGAGVAWVGFTLFGQVISCIIMFGVMAAGFVVIGFSLSKLIERVQDRRAEAEGDGDVLGAPAYARVKKAGEAGGFVPLTAGEGAAPTSVLPRARKGRRGEGAAAGEEAKGKPKHPSSSLDTQVIGGRRAPFDAPDAVEQPLTRKLGRARAAADAEKKASSPKAPSSSATPLATPRPADGFELPPFDILATSTSAKKDKATDAELTETAACLQETLESFAIMAEVVGWVAGPTVTLFKVDLPAGVRVSRITALEQDIALALAAPGVRIFAPIPGTNYVGIEVPNRTRQTVLLGDVLKDAPAGPLQVAIGKDVEGRSIVSDLAKMPHLLIGGTTGSGKSVSVNAMIMSILMRATPAEVRFIMIDPKRVEFTPYNGIPHLYVPVVTEAREAASALSWGVAEMERRLKVFSKVGARNIGQYNAKVQAEQAAIEKAVEEGKEPPSAELGDELPYIVIIIDELADLMMNVGKEVEFSISRIAQLARAAGIHLIVATQRPSTNVVTGLIKANITNRIAFNVASGIDSRVVLDTPGAERLIGLGDLLLSKPEYAKPQRIQGCYVSEDEINAVVELLKAQGEPEYHSEILQTNLITLGASQPDGSGGSCTSDDPLVWEAAEIVVSSGLGSTSNIQRRLKVGYSRAGRIMDMLEEKGVVGPPNGSKPREVLVDAMELETLKAFEAQDSCEE
>NZ_LT900217.1|WP_096228531.1|58164_59286_-|helix-turn-helix-domain-containing-protein
MTFGTVLQEARERKGMDLSTAARRLRIRPDILRSIEEDDFARMPPRGYTRNMVNAYARLLGLNPTEITRMYLDEAYAYQVGRARSDVRPSGFDMGGTSRTKRSGAARPVPPEEPEERVPRQNAFGRTLYDDRTAYTRSDYGRSAAPAAGGRVYSEGRTHTSRHSALPNGQYTNFYAGPKAPSGVQSKLPFLIAGAVILVVLVVVLVFAFGGKGGGEEDLPTVPVTGIDDTTQGEGDEGSQEPVAPPAPVAPTSAKVVYEVASGESVYMDIYEDGNITSGGTVDGPAKKEFDVTGTFKIVTSNPGGVTVTVDGTKLESTGDESTGIYSFSVDFPAILEQWKADHPTAGTAGTAGTAGTGSSGSGTTDGASTPAA
>NZ_LT900217.1|WP_096226533.1|57245_57743_-|YajQ-family-cyclic-di-GMP-binding-protein
MAKECSFDVVSTVDMQEVDNAFQQAKKELAQRYDLKDSGAEITLDKANKAITVAAPAEFVAKQVIDVIASKLVKRGIDLGAVKWGEVQPAAGQSVRQTANVVEGIDKDTAGKINKDIKATKLKVKVQIEGDKLRVSSTSRDTLQEVIAFLKGQDYGQPLQYVNYR
>NZ_LT900217.1|WP_096226532.1|55908_57237_-|30S-ribosomal-protein-S12-methylthiotransferase-RimO
MGNERARGGEGRKSVAFVTLGCAKNEVDTEHMRARATGAGYALTDDPETADAIVVNTCSFIQAATEESLEAIFEAADLPNVRDGGAALVVAGCMPARYGEDLKAELTEAGAFVPCSREDDIALVLAGVIGEASPGAESLEDAGAGAEERGPVSAYVKISDGCDRFCSYCTIPYIRGRYRSFPLDDVRSEVAAKVAAGVREIVLIAQDTGRWGADFEEPSTLAALVGTLAEEHPGTWFRVMYLQPEGLTDEYLEAVAAHANVCDYFDIPLQHVDAGILRAMNRTGSRDEFEALLARVRRRIPDATLRTTLIAGFPGETDDQFEDLCAFAEDAGFDYVGVFPYSREEGTRAFDLPGQVDDDEKADRAQRLRDVADAVCAPRVAERIGRELDVLVEGREEDGQLFGRAMCQAPEVDGVTYLEAGEVGQVVRVTIGDTLLYEMEGA
>NZ_LT900217.1|WP_096226531.1|54627_55899_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MAPTDQARPASTDKLWTPANIVTLARICLVPVFVVVLISPWPQWLGLPQVADDAKSLIAAGIFILISCTDWLDGYLARSRGEVTDFGKFMDPLADKILVAAALLALIELGSLPSWVALVILAREFIVSGVRMVAASEGVVIAASWYGKFKTVFQMVAIVLFCVKDSYMVGSLNAAFNDWLWVLSWGVMIVALVLTVVSMLDYIAKARHLIGFGRKPKDAPAGDSGNGAPADGPVPLEGAAVAGAAGKSRPITDAEAASIEPEALDALARRVLGSARRAGVRLGTAESLTGGLIAAVLTGVPGSSETVRGGVVSYVDDVKHEVLGVPRETLERHGAVSAETARAMAQGARRDLDADVAVSVTGIAGPGGAEPGKPVGTVWIGLADAEGAEARLHEFPGDRGQVRLLTVRAALERLEEALEGAGK
>NZ_LT900217.1|WP_087189757.1|53283_54342_-|recombinase-RecA
MNDEKAKMLKLTTDQIESKFGQGSIMKLGEDGKELNIGVIPTGALPLDAALGIGGVPRGRIIEVYGPESSGKTTLALQILAEAQAMGGIVAFIDAEHALDPVYAARLGVDIDEVLISQPDTGEQALEICDMLVRSGAIDAVVVDSVAALVPRAEIEGEIGDTTVGLQARLMSQALRKLAGSLSKSNTTCIFINQLREKIGVMFGNPETTTGGRALKFFSSVRIDIRRIDSIKKDGEITGNRVRAKVVKNKVAPPFKQAEFDLMYGEGISREGCIVDMAVEAGVAKKSGAWYTYGEERLGQGREAAKQTLKENPDLREEIELKVREAFEIPVITRTADEADALSPVAKPAKKK
>NZ_LT900217.1|WP_096226530.1|52475_53282_-|RecX-family-transcriptional-regulator
MSDAEVKARLRAQIAAIEGSSPACKDSASHGAVGPYREAEVSEGFCTPDEGAGAFRRASRSSCTGVRALRDAADCLGRLVPGFSQEGDGLGAAAGSPADSSGGRVPLAARTGASAADEAERAFRKIERLALAREQASAALRARLAREGFAPEAADAAVDRALSCGLVDDARYAEVLVRSRLSQGRGAQGIAAELDALGIDASVVPGWPEEFAVDHESEVERALALLDRKPPRAKNRRDAAFRRLVQKGFGASVASTAARVWSEGEECQ
>NZ_LT900217.1|WP_096226537.1|66398_68648_-|polyribonucleotide-nucleotidyltransferase
MEKIVESFELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVIGQEKDYDFFPLTVDFIEKMYAVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFVDGFKREVHVVCTTLVVDSVNPPDTICVMGASAALMLGAAPFDGPAACVRIGRDIETGEFIVNPTFEESEHSDLELTIAGTADYISMVEAGADEISEQDMLAAMAFGQEAIAAFCEVQQRFLDRANIQPVEWPVHVADPAIASRVAPFMDEMSAALHDADKLSRMGKVEELKERIKAEQFSDEERAAWKGDIAAELKKLEKKAMRAMVIATGERADGRTPEEIRPLYIVPGYLPRVHGSGLFQRGQTQVLSVVTLGMLNEWQRLDTIDPAEGKRYMHQYNFPPYCTGEAGRMGAPKRREIGHGALAERALLPVLPDEDEFPYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDIQGIEDFLGDMDFKVCGTEKGITALQMDNKARGLSVEILARALAQASEGRAHILDAMLETIEAPREELSQFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGAQINIEEDGTIHIAAIEGPAGEAAKAMILGIVKEPEVGEQFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVASVEDVLTLGDVVKVEVLEVDPKTGKISLDRLDKPDAPEGANNGGERRERSDRPRREDRSERSERDNRPGRSNRNGNGNGNGRTPRRRHEG
>NZ_LT900217.1|WP_015538750.1|68920_69208_-|30S-ribosomal-protein-S15
MADKLSITKERTAELIKEFGKGEGDSGSPEVQIAILTERIRNLTEHLKVHKKDKHTQRGLMMLIGKRRGLLKYVKNRDIEEYRALIKKLGIRDNI
>NZ_LT900217.1|WP_157780518.1|69448_69904_-|GNAT-family-N-acetyltransferase
MPIIEPYRPDLAAPLRAFLARCLPESGRTFDPEGRHAHLLDVEAAYEAFWCLVEDGGDVAGCVGVRALSKDVCELKTLFVYERLQGHGWGRRLAEQAIGLARSRGFRAMRLDTISTSANAIGLYRRLGFRDIDRYDDNPLADVFMELDLVR
>NZ_LT900217.1|WP_087189747.1|70072_71224_-|HAMP-domain-containing-histidine-kinase
MDASGFSQAKQDQTRRLSNSVLRRTLVNVVVFAVVYLALFLGFMNTLGSSLSNLAYNLVGQNYWVHTAIANLFLVCVAVGFIAGIVLVVRSGINRALRYFDLLLDSVTDVLAKREGPVVLPSELAPTALFLNGIKAEGERSERAAKAAEERKNELVVYLAHDIKTPLTSIIGYLTLLEESPDLPVDVRARYTGITLAKAYRLEELLDEFFEITRYNLQTIPIERSRFDGALFVSQVIEEFYPLAEGRSLSLVFDGPDELPVFADAGRVARVLNNVLKNAVAYADAGTEVRVRTGLVVAPDGFVWWELTVTDRGRELSPEHLERIFEKFFRADAARGSDGGGAGLGLAIAREIARAHGGDIYATSDAGLTSFTVWIPQGPSVGK
>NZ_LT900217.1|WP_096226539.1|71287_72103_-|response-regulator-transcription-factor
MPLLTPWAGAGPIQWPQGEARAAQRPGARRARNGEERGVAETKLIAVCDDEAAIADLVAQLLAQGGFEVRTFYAGADLLAAAAHEAFDLVVLDIMMPGMDGFACCRELRRTSSVPIIFLTAKDEEIDKVVGFELGADDYVVKPFKPRELLARVRARLRRSAPPAEGGRPPGSQLLEARGVAVDEEAYAATLHGEPLALTPKEFAILACLLRAAGRPVASRDLFEAVWGEEANAQSNNTVMVHIRHLRKKLAAIDSSQEFVETVWGVGYKLG
>NZ_LT900217.1|WP_096228532.1|72280_73021_+|C39-family-peptidase
MPPIGRNGAPAYSRTSYRAPAPSAARRRRSLAARAALAVALVAALAGVGWYAVGTLSALAHGGAAAGTGTPDAPQSTPRSAWRAGEVPALYQRDPAWSQALYGGDAFGVTGCGPTCLAMAYVALTGKSDLSPADAGALSERIGCASSDGTAWDFMTEGAAQLGLTAEELPADEPSVRRALVAGRPVICSMGPGDFTSTGHFIVLAGIDEHGRLEIRDPNSPERTAQTWDFDTVLRQCRNLWAYSAA
>NZ_LT900217.1|WP_087189745.1|73005_73254_-|TIGR03905-family-TSCPD-domain-containing-protein
MHTYTPRGVCSRAISVELDGDRVSHVEFAGGCDGNLKAVSKLVRGMAVDEVAALLEGNTCGRRTTSCADQLVRALRSAQAAE
>NZ_LT900217.1|WP_096226540.1|73335_74106_-|DNA-repair-protein-RecO
MASATYTARAIVLRKTKLGESDLIVTLLAQDGSQARAVAKGARKPSSPFAARLELYSSVDLLCSEGRNLDIVKEARIASSHERLRRDLEHAACAAPMAELLDRVTQEGLANPRLFALTEAALGALDASKAPQAPAVCAAHLLKALALSGLRPSLSSCAVCGAEVRGGAGAGTVPLSFCEGGIVCPACRPSVEARDVPGATVAWCRALMGSTFAEIAEIDVPPSASFAVLRFCQQWAHEHVGANLKSLNFLFTCGLF
>NZ_LT900217.1|WP_096228533.1|74111_75686_-|PASTA-domain-containing-protein
MICPNCRSENKEGAKFCNECGFPLTGRMAAVAAASTSDDTLRSIAAEGGAAPVDDAAAVDKAAEGLPACEAGAPEDDGPGAAEGPDAGAGEAAPARPAGDPEPLASPAVRTAQGSGPLDPAKLPVIGLAGVDVDEDGNEFDFGDIDDAPAADGGQQAAVPSAAVTADLSGLDECLVDSSYTPPAAAWRSGDTMEMPRVEGKAAPKQKEFRAPDPREKKHGRGRVVAIVIVLLLAAAAAAAGITYQMELWGGKVVPDVAGMTQADATYQLEGKGFTVRATQVKSDETEGLVLLTDPGSGGRAEEGSEVVIHVAVPRIVPDVVGKTRDEAAKLLEAEDFARVTFAEEKSDTAEGTVLSVTPEAGEKAKASTDITVTVAVPFTVPDVANQPLDAAKAALEEASYVPEVAYYYTEDVPEGTVVGTSPAAGEKLASGSSVTVNVAMSRASVLVPAAKDYLSSIGTISLGGTTYEIVSVDDVKYTGYNQTSFTVTAAAVTTLDGETVRGSSKQKSGTIVWDDSDNVVSVS
>NZ_LT900217.1|WP_096226541.1|75845_76763_-|GTPase-Era
MDFQPHAEGFKSGFVTLVGRPNAGKSTLINAIMGKKIAITSDTAQTTRHRFRAVLTREDFQLILVDTPGLHKPHDALGEELNTSALKALEDVDVVAMLIDASQPIGRGDEWVAAQLSRARSKKICVLSKVDLATEKQIAAQREAAEALGAWDAMVGLSSATGKNVEAFVEEVVYLLPEGPAWFPADMETDQPIEVVVAEFVREKILRSFHDEVPHAIGVRVDEMEYDKKKDLHRIFATVYVERDSQKGIIIGKKGAAIKQIGTEARADLEQLLGTRVYLDLSVKVKKNWRRDASQIRRFGYGEGA

Crispr_ID: NZ_LT900217_2

• CRISPR_ID: NZ_LT900217_2
• CRISPR_location: 397600-398159
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 8 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NZ_LT900217_2

Consensus_repeat	Method
NGTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CRT
GTTTCAACCCGCGAGCCCGCGA--GGGCTCGAC	PILER-CR
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CRISPRCasFinder

spacers of NZ_LT900217_2

>2.1|397631|36|NZ_LT900217|CRT
CATGGTGCCCTCAACGGCCTCACCGTCCGAATCGAC
>2.2|397698|36|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
CATTTTCTCCTCCCAACCTTGATTAGATTGTTTCCA
>2.3|397765|37|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
GAGCCTGAACCAGGGCGTCACGCAGCTCATCACCCTG
>2.4|397833|33|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
TGATGCACTCCGCTATTTTCTGGGCCGATCCTT
>2.5|397897|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
AGGTCTTTAAGGCCCTCGCTTGCTGCTTCGTAGC
>2.6|397962|36|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
GTTCTCGTCGCTCGGGCGCTCCGCCGTCACGTTGTA
>2.7|398029|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
CTTTAATGCACGCTCGATCTGGCGCAGTTCAGCG
>2.8|398094|35|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
TTCACGCGACGGATCGTTCGCCTGCGACGTGGTGC

CRISPR arrays and Neighbor proteins around NZ_LT900217_2

CRISPR arrays

The CRISPR arrays of NZ_LT900217_2

>merge|NZ_LT900217|2|397600-398159|CRT,PILER-CR,CRISPRCasFinder
CGTTTCAATCCATGCGCCCTGAGGACTCGACCATGGTGCCCTCAACGGCCTCACCGTCCGAATCGACGTTTCAACCCGCGAGCCCGCGAGGGCTCGACCATTTTCTCCTCCCAACCTTGATTAGATTGTTTCCAGTTTCAACCCGCGAGCCCGCGAGGGCTCGACGAGCCTGAACCAGGGCGTCACGCAGCTCATCACCCTGGTTTCAACCCGCGAGCCCGCGAGGGCTCGACTGATGCACTCCGCTATTTTCTGGGCCGATCCTTGTTTCAACCCGCGAGCCCGCGAGGGCTCGACAGGTCTTTAAGGCCCTCGCTTGCTGCTTCGTAGCGTTTCAACCCGCGAGCCCGCGAGGGCTCGACGTTCTCGTCGCTCGGGCGCTCCGCCGTCACGTTGTAGTTTCAACCCGCGAGCCCGCGAGGGCTCGACCTTTAATGCACGCTCGATCTGGCGCAGTTCAGCGGTTTCAACCCGCGAGCCCGCGAGGGCTCGACTTCACGCGACGGATCGTTCGCCTGCGACGTGGTGCGTTTCAACCCGCGAGCCCGCGAGGGCTCGAC

>NZ_LT900217|2|1|397600-398159|CRT
CGTTTCAATCCATGCGCCCTGAGGACTCGAC	CATGGTGCCCTCAACGGCCTCACCGTCCGAATCGAC
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CATTTTCTCCTCCCAACCTTGATTAGATTGTTTCCA
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	GAGCCTGAACCAGGGCGTCACGCAGCTCATCACCCTG
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	TGATGCACTCCGCTATTTTCTGGGCCGATCCTT
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	AGGTCTTTAAGGCCCTCGCTTGCTGCTTCGTAGC
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	GTTCTCGTCGCTCGGGCGCTCCGCCGTCACGTTGTA
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CTTTAATGCACGCTCGATCTGGCGCAGTTCAGCG
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	TTCACGCGACGGATCGTTCGCCTGCGACGTGGTGC
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC

>NZ_LT900217|2|1|397667-398159|PILER-CR
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CATTTTCTCCTCCCAACCTTGATTAGATTGTTTCCA
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	GAGCCTGAACCAGGGCGTCACGCAGCTCATCACCCTG
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	TGATGCACTCCGCTATTTTCTGGGCCGATCCTT
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	AGGTCTTTAAGGCCCTCGCTTGCTGCTTCGTAGC
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	GTTCTCGTCGCTCGGGCGCTCCGCCGTCACGTTGTA
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CTTTAATGCACGCTCGATCTGGCGCAGTTCAGCG
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	TTCACGCGACGGATCGTTCGCCTGCGACGTGGTGC
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC

>NZ_LT900217|2|2|397667-398159|CRISPRCasFinder
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CATTTTCTCCTCCCAACCTTGATTAGATTGTTTCCA
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	GAGCCTGAACCAGGGCGTCACGCAGCTCATCACCCTG
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	TGATGCACTCCGCTATTTTCTGGGCCGATCCTT
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	AGGTCTTTAAGGCCCTCGCTTGCTGCTTCGTAGC
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	GTTCTCGTCGCTCGGGCGCTCCGCCGTCACGTTGTA
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	CTTTAATGCACGCTCGATCTGGCGCAGTTCAGCG
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC	TTCACGCGACGGATCGTTCGCCTGCGACGTGGTGC
GTTTCAACCCGCGAGCCCGCGAGGGCTCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT900217.1|WP_096228548.1|386860_388312_-|L,D-transpeptidase/peptidoglycan-binding-protein	unknown	unknown	gnl|CDD|341130
NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein	unknown	unknown	gnl|CDD|372972
NZ_LT900217.1|WP_087190846.1|392152_392434_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT900217.1|WP_096226808.1|396577_397222_-|thermonuclease-family-protein	unknown	unknown	gnl|CDD|214615
NZ_LT900217.1|WP_096226805.1|395070_395616_-|hypothetical-protein	unknown	unknown	unknown
NZ_LT900217.1|WP_096226799.1|389485_390229_-|hypothetical-protein	unknown	unknown	gnl|CDD|273344
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein	unknown	unknown	gnl|CDD|341491
NZ_LT900217.1|WP_096226801.1|390281_390746_-|SsrA-binding-protein-SmpB	unknown	unknown	gnl|CDD|376590
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NZ_LT900217.1|WP_096226803.1|390751_391951_-|M42-family-metallopeptidase	unknown	unknown	gnl|CDD|349906
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|187768
NZ_LT900217.1|WP_096226804.1|392611_394960_+|bifunctional-alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)/trehalose-phosphatase	unknown	unknown	gnl|CDD|184712
NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239160
NZ_LT900217.1|WP_096226807.1|396185_396587_-|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl|CDD|198403
NZ_LT900217.1|WP_096226806.1|395612_396068_-|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl|CDD|377217
NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187534
NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|378245

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.6e-55	183.3	0.0
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	6.6e-120	394.2	0.0
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.7e-31	104.3	0.0
NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	3.5e-29	95.8	0.0
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	1.1e-79	261.6	0.0
NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	4.6e-143	471.0	0.0
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	3.8e-148	489.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT900217.1|WP_096228548.1|386860_388312_-|L,D-transpeptidase/peptidoglycan-binding-protein	gnl|CDD|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	3.16489e-22
NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein	gnl|CDD|372972	pfam14229, DUF4332, Domain of unknown function (DUF4332). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 134 and 356 amino acids in length. This domain contains helix-hairpin-helix motifs.	0.00195132
NZ_LT900217.1|WP_096226808.1|396577_397222_-|thermonuclease-family-protein	gnl|CDD|214615	smart00318, SNc, Staphylococcal nuclease homologues.	1.51054e-18
NZ_LT900217.1|WP_096226799.1|389485_390229_-|hypothetical-protein	gnl|CDD|273344	TIGR00927, retinal_rod, K+-dependent Na+/Ca+ exchanger. [Transport and binding proteins, Cations and iron carrying compounds].	0.000104012
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.14566e-147
NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein	gnl|CDD|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	5.27161e-18
NZ_LT900217.1|WP_096226801.1|390281_390746_-|SsrA-binding-protein-SmpB	gnl|CDD|376590	pfam01668, SmpB, SmpB protein.	6.30211e-85
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.14858e-56
NZ_LT900217.1|WP_096226803.1|390751_391951_-|M42-family-metallopeptidase	gnl|CDD|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	1.80316e-129
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.04378e-28
NZ_LT900217.1|WP_096226804.1|392611_394960_+|bifunctional-alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)/trehalose-phosphatase	gnl|CDD|184712	PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional.	0
NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase	gnl|CDD|239160	cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.52915e-154
NZ_LT900217.1|WP_096226807.1|396185_396587_-|GIY-YIG-nuclease-family-protein	gnl|CDD|198403	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1. This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.	8.53609e-36
NZ_LT900217.1|WP_096226806.1|395612_396068_-|YhcH/YjgK/YiaL-family-protein	gnl|CDD|377217	pfam04074, DUF386, Domain of unknown function (DUF386). This family consists of conserved hypothetical proteins, typically about 150 amino acids in length, with no known function.	9.08372e-48
NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.55537e-32
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.05853e-98
NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	6.8465e-178
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0

Protein sequences

>NZ_LT900217.1|WP_096226808.1|396577_397222_-|thermonuclease-family-protein
MASEKQQAGRALRRLARKNPLAALAIAAVLVIGAALGWFGAAGGGVAEDAAPGRDGQATIAPVGDGLQQAQVVRVVDGDTLKVSVPGEADATVRLIGMDTPESVAADEARNCEEGRIASDYAKSLVAPGQTVWLSRDVSDADRYGRLLRYVWIERPDDPADEGEIAGKMLNAILVRDGYAQVKRYKPDTTLHDLFQRWGDEAAADGRGVTYKWA
>NZ_LT900217.1|WP_096226807.1|396185_396587_-|GIY-YIG-nuclease-family-protein
MGVEGGSSPEPDAAPQERPAFYVYVLACADGTLYTGYTNDVEQRARTHNAGKGAKYTRSRTPVEVVAQARFATKHEAMSAEFRFKHLSRRAKDRLLARARTEGFAVVLAELQEAASADAGAAVDDGGHPGGKA
>NZ_LT900217.1|WP_096226806.1|395612_396068_-|YhcH/YjgK/YiaL-family-protein
MLVTPLPTADKNDYLSARMRAAFSFLREADLAHLPLGRADIDGDEVFANVQEYDTVPADQKQMEAHRRYYDVQYVVEGEEVLQYAPLAGLVPNGEFDEEADFGLFATPEALSSIVLRAGEMAVLAPEDAHKPGCAADEPGRVRKIVVKVRA
>NZ_LT900217.1|WP_096226805.1|395070_395616_-|hypothetical-protein
MTAGEDALVGQLARLLEAERDRLGTRRMLELLSLLLGERALVGDASRYVYEYGRRAGYSLPAYPLDGSGEFREFFAEEGVRNVPEWYERKLGVPPQLYAQLPARTVVAVRDAVNRRRAFVLDGVRHAQDAGFAGLAESGLSRTLPPEGLAELLDAVMAFLLGDPVREGARPGAVRFVSRVF
>NZ_LT900217.1|WP_096226804.1|392611_394960_+|bifunctional-alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)/trehalose-phosphatase
MERKPATGKVNRMDNPHNRLIIVSNRLPYRIEPDEREGFAFTRTVGGLVAGLEPLHAQPGNVWLGWADEPAGLDDAGRARFERALAERSCAPVRLDGRDAELYYEGFSNSTLWPLFHGFPQHTRFDEEAWEAYVRVNERFRDAVLALARPGDTVWVHDYHLMLLPSLLREALPDASIGFFLHIPFPDYETFRMLPWRRELMRGVLGADLVGFHAYDYVRHFLSSCRRIVGVENESGTLFADGRLAQVDAFPLGIDYGRYRDAARLPAVRRLVTELGEEKGHEGCKLMLSVERLDYSKGIPERLLAFDAFLDRFPEWRGRVVLVLVTVPSRENVASYAALKKQVDELVGLINGKHSTMDWTPVDYYYRSLPFERLVSLYAASDVMLVTPLRDGMNLVCKEYLACHDGAGGTLVLSEMAGASYELHEALTVNPFDQEGVVDAMRRALEMPEAEQRRRNAPMQERLARYTSEKWAREFLDAAADVKRRQAGLSAHLLGPTSAGRLLEAFRGARRRALLLDYDGTLMPFSDDPARVAPDARLRALLQQLGAGARTDVAVVSGRDRATLESWLGDLPVDLVAEHGIWFRGRDERTWVLEEPLSDDWKDAVRPVLADFVDRTPGSMLEEKDFSLVWHYRMCSQELAERRVIEIKNALGDGLADRGIALMDGNKVVEVKPRGVDKGHAAHRWFRDPAYGFVMAAGDDRTDEDVFEAAPESAWTVKIGDGPTRARYALKNTGEMRALLEQLAAACAEKDAGDDVPPSAGRRDALRAPATVMPRTRALARA
>NZ_LT900217.1|WP_087190846.1|392152_392434_-|hypothetical-protein
MQTYIAHYRSPAASDARATGLFEFQSDARAGTKANSRDARLRMLELYGKAAVSWTIDRVERKKASEASQDGQLELDFRPPKKQRVRAKKKEYW
>NZ_LT900217.1|WP_096226803.1|390751_391951_-|M42-family-metallopeptidase
MKKKQVRFLKELLETPSATGTEIAVARLVRERLADTADEVRTDVMGSVHATLKGAGAGPSLMLSAHMDEIGLMVTYISDEGYLSVASVGGVDAAVLPGMRVDVHASESAEPLRGVVGRKPIHLIEPDERKKVTPLDKLVIDLGLPGKKVRKLVRVGDVITFGVGFERFGAGMAVSRAFDDKAGVWVGVRVLEQLARAGRAPGDFTFAATVQEEIGTRGAETSAYSVRPDVGLAFDVTHATDYPGIDPTKHGKIVCGQGPVIARGPNINPEVFERLVAAAEAEGLPYQLEAEPGVTGTDARAIQMARGGIPTGLVSVPLRYMHTPTEVVCLADLDATVKLVVRFALDLGEDACFVPGMAGASPLAREEAADDAELAAQAVAGAPAHETAAQRQFDETGVE
>NZ_LT900217.1|WP_096226801.1|390281_390746_-|SsrA-binding-protein-SmpB
MKREASTIAKNKKAFHEYDILETYEAGIELTGTEVRSLRENHCQLTDCFALVRDGEVWLHNVHIPPYANGNLANPDPDRKRKLLLHKRQIRLLREQVKEKGMALVPLKMYFKENSLVKVELGVARGKKLHDKRATMAERDSRREIERALKERSR
>NZ_LT900217.1|WP_096226799.1|389485_390229_-|hypothetical-protein
MDLDDELENIENGAETEAEQIDEETELEDLEEFQDDEEFDPNAGETDLEEAYEGFFAEEGPDGEGETSPSGDDGGLAAVVERSTGIDLSEEGFHLVDGDGEDLEAELGEEGTVDGYDGEELADDTEDVTVVEPADNEDGYELVELELDEDDIVRYLEDEDGNRIGFVLMEDGEECEYLYVEDDEEDADGAGEDEDNPYDLGITKEGVAEATNDMNAIYKDGIAVAAELKDAFDDIKSAFDFSFLKQK
>NZ_LT900217.1|WP_096228548.1|386860_388312_-|L,D-transpeptidase/peptidoglycan-binding-protein
MLPVDVSEADAKGGRKPLKVLGIVLGVIVALLAVVYLAGALVFMDRFLPRTTVGDLDVSLKSSAEVQGLLADVIDDYVLKVEGQGFSLKLSAAEAGMRLDGRAATDAMHASANVWAWPIEILKAHDESDKLAATYNESGLGDTVRAAVDEFNKTATPPTDAVIAYSEAKGAFVVEPEAAGTALSYDTVIKAVDDAVLALQPAVKLGADALQQPKVLSSDPKLTAAAEQANTMIKADLVLTMAGDTAGEVNADLISQWVRLGDDLSATLDEAALTAWVDELAAACNTVGTQRTYTRPDGKVVTVAGGVYGWSVDRDALLNLVKESVAAGTVQTAEVPCTTVGTGYNGAGAQDWGLRYCDIDLAEQYARFYDETGALVWESPIVSGTPNGSHDTPTGVYWLNQKASPSKLKGTNLDGSKYESTVQYWMPFVGNVIGLHDADWQSSFGGSRYRDGAGSHGCVNLPPYKAAELYGIIQAGDVVVSHW
>NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2
MYVLVTYDVETASPQGTCRLRRVAKICVKYGQRVQNSVFECSLDPAQFETMKSELMKAADLTRDSLRFYNLGKNWKRKVEHVGAKEAYDPEGFLCV
>NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTNSEAYVCKGDDALVVRVDGEKALQVPFHLLEGIVMFGYLGCSPAVLGACAERGITLSFLDEAGRFLARVEGPVSGNVLLRRAQYRVSDDPDAALHLAQRFVAAKVRNARTVLQRYRRDYPDEADSALDEAIEGLKLREAGAFSAVDADELRGIEGDAAHRYFGVFDRLLRAGDGFAFSGRTRRPPRDPVNAMLSFFYSLLAREVASACETVGLDPQVGFFHRDRPGRASLALDVMEELRAWYVDRFVVSLINRRQVGGADFSSSEASGVVLTDAARKNALGLWQQRKQEQVMHPFLKEKVPVGLVPFLQVQLLARHLRGDLDDYPAFIWR
>NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4
MYADDELLPLSGLQHIAYCERQWALIHLEQIWDESYDTVRGSLFHERVHLEGYSAAKGVRSERGYRLVSRSLGIAGIADVVEFAADGDAAKAVVRPVEYKVGKPKIEEWDRIQVCAQALCLEEMLGCAVGQGDLFYGATRRRERVVLDDALRERVAGLALRMHELFERGETPRAVRGSKCRRCSLADSCLPEAFDHDAVAYWKEAGFEKASQHALCDEL
>NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAEPIKNRYDFVFFFDVKNGNPNGDPDAGNMPRIDPDTSRGIVSDVCLKRKIRNYVDLVKGEEIDDPDVAEGELGYKIYVQEAAVLNDRNRKAYVHYDMKPASKKLPKAKEDQLKVTKFMCDNFFDIRAFGAVMTTDVNCGQVRGPIQLCFAESVDPVLPLEMSITRMAVTNEKDAEKEKTMGRKQYVPYGLYRAEGFISAALAEKTGFSQDDLDLFFEALMNMFENDRSAARGLMASRKLFAFKHESKLGNAPAHKLFDTVSVKRLIEDGAEARAFSDYEIVVDRAAIPEGVELLELPVE
>NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQELNRYYERLLADPERDVPARHWSVEKAAWELKLSRDGRLLGAYQLTAGTGKELRRFVSLRVPEHTTRSGTGMLPFFLCDNAAYLLGYDEKRGPDKLASAHALHEAVLGECDDEGAQAVLRFFEREDRDADLDEGVRSELAEGGGFAVFRLDGDRGRLHERPAVAAAWASYCDGQAAGEVVGQCAVTGEEGPLARLFPQVTGVPGAQSAGASLVSFNLQSFESYGKSQAYNASVSEAAAFNAGSALRQLCADREHRVRIGETTVVFWADRPAPAEDLVMLGILDPDELDRAEDQNAVQEVRAALESMERGLPLAGVDTETRYFVLGLAPNAARLAVRFFETSTLGRMAENFGAYLRDVSMADVRARSLRTLLLQTAPMGSADQLPSTLVNGCIEAMLTGRAFPQALYYAVLSRMRSDHARRNSWDMGQRAALLKACLVRRARLGAENSNGEDGAARADEERSLDVDLDKKRANRGYVLGRLFAVMEHAQRSALGEVNATIRDRYIGAASTTPARVFPHLLHNTQNHLSKLRKFNPGLCVKFEKANDEIMAMLDGPALFPKTLDAEDQGEFFVGYHQQRVDLWKKHDDEADAAADAEDADDETETN
>NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5
MGYGIKVLARGPRACFTRPEMKAERVSYDVITPSAARGLIEAVYWKPAIRWHIDRIEVLNEIRFDTFRRNELGGKLSYRNAKAAMERGEEVWTAANDDRQQRATMYLKDVAYLIDAHFTLTEQAGEDDTVEKHYNIALRRLRKGQCFNQPYFGCREFPADVSIMEEPGDRPKSFYAGSGGQDLGFMLFDIDFDHDMEPQFFRASMRDGVIDVARAREAVVR
>NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'
MPEYYAHTGSDLDDVSTWQTLSEHANEVARLAEAFAEKFGMGVWGRTLGLLHDAGKASVGFRRRLEGGKPVDHSTAGAKVAVGRYGVCGQFMAYALCGHHGGMPNGKIWSNPPSSNSKLLRSPLKDRLGGEIESYNAFFELVEAGQINLPDAARLGAPMHPGRTFESTARKAFSMFVLEHFLYSSLVDGDYLDTERFMTPEASEAREARELANMEELLAKLESHMAELMEKAGDTSVNRARRSVYEDCLATAVQPSGLYTMTVPTGGGKTLSSMAFGLRHAVEQGMERVIVAIPYTSIVEQTAATLKAIFGAENVLEHHSNYDFRDLDDEEKARQRLAIQNWDAPIVVTTNVQLFESLFSNKPGKSRKVHNMARSVIILDEAQTLPDELLKPSLAMLEELAAGYGSSMVLCTATQPALEGLWPFGAEPREIVQHRDLFDEAFGGRVAYESLGTIEQADLVERIAAGREVLCVVGTRGLARAIYDNVVARAVERGDLSDVKRAFDEGYFHLSAFMIPGHRSAMLERIRERLDRKERCVVVSTQLVEAGVDVDFPEVYRELAGLDSVVQAAGRCNREGRLPGAGTVRVFELSVDGERQKTETWLEKMKGIARDVVRENGGRVDEGLIPAFFQTRYGSECLDAKGIFQKTATKNLISDRFETMPFEQCALDYRIIQDDSVPVFVPWGAEGRALLKELLASENPAGMAMRLQRFSVGVPIWSIEGYKQADAVEELEPFLILKEDGCRSFYREDVGLVAAGEEVLELLSC
>NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein
MMRESDIYELRLFDRILIVFRMSRGEYGDLSVEVVSADSSASRLLPLSFDGETTDERLFEWIRRRRIPKNRAYVDEILKSCGIESDDAKSIIDVSKGLSLNDSYWVVPRGFEGSFAEWNLYENEMSAALQLVAYTGVASDALADGGIPSELTNSGMFPKAWRAEGSKRILYKAGHLFEGANVGKEPYSEYLSFQIAHRMGIDAVPYDLALWKGKLCSTCELFCSKDVAFVPFGFAVPTERFKNMNLREALAYFASLGEEALERFKSMLVFDALIGNEDRHMGNYGVLRDSATGAVKGMAPLFDHNVGLFAGAMPDELNVDAMMRKASIGRGAFAPSLDEQAALVIGPVQKAQLERLAGFVFERHPVMDEFDESDTRNYFSDERLKCLNGYVARRAEVLLELPTVDPGKIRQDVG
>NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase
MAEDKVEVLRAGCFFCHVRCGVLVTKVNGRITNIEGDPDCPHNKGYTCSRLDKQRYLEGFVYNPNRLKKPLKRVGERGGGQWEEISWDQAFDEIAEKLAELRDEYGPETLAFTEGTARTWSWLHYKFTNLFGSPNTGGNGTICYSSDMWLEPCTYGGFCSDKSDWVNAGLVVLWGRNTIASEPLLWDWVNTNRKERGAKLMVIDPRFSEVAQQADLFLQIRPGTDAALALGWINVIIEEDLYDHEFVDEWCVGFDELRERAKDYPPEKVAEITWIPADKIRESARMYATTKPACLPWGQKGGDASGINASSAIRGKAILRAITGNIDKKGGDQLAPPSRFPPAFYEHYALSQEQRDKMIGNDRFPGLTFKGWDVISQAYPSFYPYSNAPLLFRAMRDGDPYPVKALIVQADNPVMAFSNTKLVVEALMNLDLLVVHDYFMTPTAALADYALPAATWLERPDNCYAVMNHRPMYFGAQARVLERFEGGADVDFRDDYEFFYGLAIRLGQEDKWWGPKAEDMLDFQLAPMGLTHEKFYHDVKYMAGQKKFEKYKEPGYKFLTPSGKVELYSSVIEDLARETGLPFDPLPAFEYPASSVEKHPEWEGVYPLVMITGARFLPFYHSEHRQPGPYRNLHPDPIFDIHPDTAIDLDIRDGDWCWIETHMGRIKQRARKTSIVDPRVISVQHDWWFPEKDQALPSLFGAFESNANVLLDDDPDSLDQLIGAWQQTGVAAKVYKCEEQDR
>NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein
MAADLDKLFGIDPDAVAKLKELGIATIEEFYDVAKYADSRAELSEKTGVDPFKLEEWSSTAGNFILMSNCEW

Crispr_ID: NZ_LT900217_3

• CRISPR_ID: NZ_LT900217_3
• CRISPR_location: 407623-408130
• CRISPR_type: TypeI
• Repeat_type: NA
• Spacer_info: 7 spacers
• Cas_protein_info: cas3,cas5,cas8c,cas7,cas4,cas1,cas2

Consensus repeat of NZ_LT900217_3

Consensus_repeat	Method
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	CRT
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	PILER-CR
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	CRISPRCasFinder

spacers of NZ_LT900217_3

>3.1|407656|36|NZ_LT900217|CRT
CCTGCATGAGCGACCCGAGCTGCTGGACTAAGGGCA
>3.2|407725|35|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
GTTAGAAGAGCTCGTGTGAGCCTTTTTGAGACCTT
>3.3|407793|33|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
TATGGCTTCAATCGCTCGTTTGGGCGTGCTCGA
>3.4|407859|35|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
CCGCTCCCCTCCCGTTGGAGGCCGCGCCTCTTGGA
>3.5|407927|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
AGCGAACGCACGAGAGGGTCATCGCCGAGTACCC
>3.6|407994|36|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
GCTGATGGAGCGCGTCGTGCCGTACACGGAAGTGTG
>3.7|408063|35|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder
GGTCTCTTCTGCAACCTGATTCCACACCCGCGAGA

CRISPR arrays and Neighbor proteins around NZ_LT900217_3

CRISPR arrays

The CRISPR arrays of NZ_LT900217_3

>merge|NZ_LT900217|3|407623-408130|CRT,PILER-CR,CRISPRCasFinder
ATTTCAACCCACGCGCCCCTATGGGGCGCGACCCCTGCATGAGCGACCCGAGCTGCTGGACTAAGGGCAGTTTCAACCCACGCGCCCCGCGAGGGGCGCGACGTTAGAAGAGCTCGTGTGAGCCTTTTTGAGACCTTGTTTCAACCCACGCGCCCCGCGAGGGGCGCGACTATGGCTTCAATCGCTCGTTTGGGCGTGCTCGAGTTTCAACCCACGCGCCCCGCGAGGGGCGCGACCCGCTCCCCTCCCGTTGGAGGCCGCGCCTCTTGGAGTTTCAACCCACGCGCCCCGCGAGGGGCGCGACAGCGAACGCACGAGAGGGTCATCGCCGAGTACCCGTTTCAACCCACGCGCCCCGCGAGGGGCGCGACGCTGATGGAGCGCGTCGTGCCGTACACGGAAGTGTGGTTTCAACCCACGCGCCCCGCGAGGGGCGCGACGGTCTCTTCTGCAACCTGATTCCACACCCGCGAGAGTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC

>NZ_LT900217|3|2|407623-408130|CRT
ATTTCAACCCACGCGCCCCTATGGGGCGCGACC	CCTGCATGAGCGACCCGAGCTGCTGGACTAAGGGCA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GTTAGAAGAGCTCGTGTGAGCCTTTTTGAGACCTT
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	TATGGCTTCAATCGCTCGTTTGGGCGTGCTCGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	CCGCTCCCCTCCCGTTGGAGGCCGCGCCTCTTGGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	AGCGAACGCACGAGAGGGTCATCGCCGAGTACCC
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GCTGATGGAGCGCGTCGTGCCGTACACGGAAGTGTG
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GGTCTCTTCTGCAACCTGATTCCACACCCGCGAGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC

>NZ_LT900217|3|2|407692-408130|PILER-CR
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GTTAGAAGAGCTCGTGTGAGCCTTTTTGAGACCTT
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	TATGGCTTCAATCGCTCGTTTGGGCGTGCTCGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	CCGCTCCCCTCCCGTTGGAGGCCGCGCCTCTTGGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	AGCGAACGCACGAGAGGGTCATCGCCGAGTACCC
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GCTGATGGAGCGCGTCGTGCCGTACACGGAAGTGTG
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GGTCTCTTCTGCAACCTGATTCCACACCCGCGAGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC

>NZ_LT900217|3|3|407692-408130|CRISPRCasFinder
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GTTAGAAGAGCTCGTGTGAGCCTTTTTGAGACCTT
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	TATGGCTTCAATCGCTCGTTTGGGCGTGCTCGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	CCGCTCCCCTCCCGTTGGAGGCCGCGCCTCTTGGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	AGCGAACGCACGAGAGGGTCATCGCCGAGTACCC
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GCTGATGGAGCGCGTCGTGCCGTACACGGAAGTGTG
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC	GGTCTCTTCTGCAACCTGATTCCACACCCGCGAGA
GTTTCAACCCACGCGCCCCGCGAGGGGCGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT900217.1|WP_096226823.1|416436_416655_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|226181
NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein	unknown	unknown	gnl|CDD|372972
NZ_LT900217.1|WP_096226821.1|413899_415060_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|377367
NZ_LT900217.1|WP_096226819.1|411636_412416_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|274100
NZ_LT900217.1|WP_096226808.1|396577_397222_-|thermonuclease-family-protein	unknown	unknown	gnl|CDD|214615
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|187768
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein	unknown	unknown	gnl|CDD|341491
NZ_LT900217.1|WP_154270023.1|415233_415377_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187534
NZ_LT900217.1|WP_087190831.1|415575_415803_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|197775
NZ_LT900217.1|WP_096226822.1|416102_416324_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|197775
NZ_LT900217.1|WP_096226807.1|396185_396587_-|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl|CDD|198403
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NZ_LT900217.1|WP_096226820.1|412397_412655_+|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl|CDD|237756
NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|187856
NZ_LT900217.1|WP_096228549.1|416721_417294_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239646
NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239160
NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|378245

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	4.6e-143	471.0	0.0
NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2	cas2	COG1343_cas2_CAS-I:CAS-II:CAS-III	3.5e-29	95.8	0.0
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.7e-31	104.3	0.0
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	6.6e-120	394.2	0.0
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	1.1e-79	261.6	0.0
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.6e-55	183.3	0.0
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	3.8e-148	489.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT900217.1|WP_096226823.1|416436_416655_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	5.12836e-25
NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein	gnl|CDD|372972	pfam14229, DUF4332, Domain of unknown function (DUF4332). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 134 and 356 amino acids in length. This domain contains helix-hairpin-helix motifs.	0.00195132
NZ_LT900217.1|WP_096226821.1|413899_415060_-|GNAT-family-N-acetyltransferase	gnl|CDD|377367	pfam04463, DUF523, Protein of unknown function (DUF523). Family of uncharacterized bacterial proteins.	4.1994e-62
NZ_LT900217.1|WP_096226819.1|411636_412416_+|TetR-family-transcriptional-regulator	gnl|CDD|274100	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.	8.82923e-12
NZ_LT900217.1|WP_096226808.1|396577_397222_-|thermonuclease-family-protein	gnl|CDD|214615	smart00318, SNc, Staphylococcal nuclease homologues.	1.51054e-18
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.04378e-28
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.14566e-147
NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein	gnl|CDD|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	5.27161e-18
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.05853e-98
NZ_LT900217.1|WP_087190831.1|415575_415803_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	8.80089e-11
NZ_LT900217.1|WP_096226822.1|416102_416324_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	8.78525e-12
NZ_LT900217.1|WP_096226807.1|396185_396587_-|GIY-YIG-nuclease-family-protein	gnl|CDD|198403	cd10456, GIY-YIG_UPF0213, The GIY-YIG domain of uncharacterized protein family UPF0213 related to structure-specific endonuclease SLX1. This family contains a group of uncharacterized proteins found mainly in bacteria and several in dsDNA viruses. Although their function roles have not been recognized, these proteins show significant sequence similarities with the N-terminal GIY-YIG endonuclease domain of structure-specific endonuclease subunit SLX1, which binds another structure-specific endonuclease subunit SLX4 to form an active heterodimeric SLX1-SLX4 complex. This complex functions as a 5' flap endonuclease in yeast, and has also been identified as a Holliday junction resolvase in human.	8.53609e-36
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.14858e-56
NZ_LT900217.1|WP_096226820.1|412397_412655_+|zinc-ribbon-domain-containing-protein	gnl|CDD|237756	PRK14559, PRK14559, serine/threonine phosphatase.	0.00153484
NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.55537e-32
NZ_LT900217.1|WP_096228549.1|416721_417294_+|NUDIX-hydrolase	gnl|CDD|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.69486e-40
NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase	gnl|CDD|239160	cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.52915e-154
NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	6.8465e-178
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0

Protein sequences

>NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein
MMRESDIYELRLFDRILIVFRMSRGEYGDLSVEVVSADSSASRLLPLSFDGETTDERLFEWIRRRRIPKNRAYVDEILKSCGIESDDAKSIIDVSKGLSLNDSYWVVPRGFEGSFAEWNLYENEMSAALQLVAYTGVASDALADGGIPSELTNSGMFPKAWRAEGSKRILYKAGHLFEGANVGKEPYSEYLSFQIAHRMGIDAVPYDLALWKGKLCSTCELFCSKDVAFVPFGFAVPTERFKNMNLREALAYFASLGEEALERFKSMLVFDALIGNEDRHMGNYGVLRDSATGAVKGMAPLFDHNVGLFAGAMPDELNVDAMMRKASIGRGAFAPSLDEQAALVIGPVQKAQLERLAGFVFERHPVMDEFDESDTRNYFSDERLKCLNGYVARRAEVLLELPTVDPGKIRQDVG
>NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'
MPEYYAHTGSDLDDVSTWQTLSEHANEVARLAEAFAEKFGMGVWGRTLGLLHDAGKASVGFRRRLEGGKPVDHSTAGAKVAVGRYGVCGQFMAYALCGHHGGMPNGKIWSNPPSSNSKLLRSPLKDRLGGEIESYNAFFELVEAGQINLPDAARLGAPMHPGRTFESTARKAFSMFVLEHFLYSSLVDGDYLDTERFMTPEASEAREARELANMEELLAKLESHMAELMEKAGDTSVNRARRSVYEDCLATAVQPSGLYTMTVPTGGGKTLSSMAFGLRHAVEQGMERVIVAIPYTSIVEQTAATLKAIFGAENVLEHHSNYDFRDLDDEEKARQRLAIQNWDAPIVVTTNVQLFESLFSNKPGKSRKVHNMARSVIILDEAQTLPDELLKPSLAMLEELAAGYGSSMVLCTATQPALEGLWPFGAEPREIVQHRDLFDEAFGGRVAYESLGTIEQADLVERIAAGREVLCVVGTRGLARAIYDNVVARAVERGDLSDVKRAFDEGYFHLSAFMIPGHRSAMLERIRERLDRKERCVVVSTQLVEAGVDVDFPEVYRELAGLDSVVQAAGRCNREGRLPGAGTVRVFELSVDGERQKTETWLEKMKGIARDVVRENGGRVDEGLIPAFFQTRYGSECLDAKGIFQKTATKNLISDRFETMPFEQCALDYRIIQDDSVPVFVPWGAEGRALLKELLASENPAGMAMRLQRFSVGVPIWSIEGYKQADAVEELEPFLILKEDGCRSFYREDVGLVAAGEEVLELLSC
>NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5
MGYGIKVLARGPRACFTRPEMKAERVSYDVITPSAARGLIEAVYWKPAIRWHIDRIEVLNEIRFDTFRRNELGGKLSYRNAKAAMERGEEVWTAANDDRQQRATMYLKDVAYLIDAHFTLTEQAGEDDTVEKHYNIALRRLRKGQCFNQPYFGCREFPADVSIMEEPGDRPKSFYAGSGGQDLGFMLFDIDFDHDMEPQFFRASMRDGVIDVARAREAVVR
>NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQELNRYYERLLADPERDVPARHWSVEKAAWELKLSRDGRLLGAYQLTAGTGKELRRFVSLRVPEHTTRSGTGMLPFFLCDNAAYLLGYDEKRGPDKLASAHALHEAVLGECDDEGAQAVLRFFEREDRDADLDEGVRSELAEGGGFAVFRLDGDRGRLHERPAVAAAWASYCDGQAAGEVVGQCAVTGEEGPLARLFPQVTGVPGAQSAGASLVSFNLQSFESYGKSQAYNASVSEAAAFNAGSALRQLCADREHRVRIGETTVVFWADRPAPAEDLVMLGILDPDELDRAEDQNAVQEVRAALESMERGLPLAGVDTETRYFVLGLAPNAARLAVRFFETSTLGRMAENFGAYLRDVSMADVRARSLRTLLLQTAPMGSADQLPSTLVNGCIEAMLTGRAFPQALYYAVLSRMRSDHARRNSWDMGQRAALLKACLVRRARLGAENSNGEDGAARADEERSLDVDLDKKRANRGYVLGRLFAVMEHAQRSALGEVNATIRDRYIGAASTTPARVFPHLLHNTQNHLSKLRKFNPGLCVKFEKANDEIMAMLDGPALFPKTLDAEDQGEFFVGYHQQRVDLWKKHDDEADAAADAEDADDETETN
>NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAEPIKNRYDFVFFFDVKNGNPNGDPDAGNMPRIDPDTSRGIVSDVCLKRKIRNYVDLVKGEEIDDPDVAEGELGYKIYVQEAAVLNDRNRKAYVHYDMKPASKKLPKAKEDQLKVTKFMCDNFFDIRAFGAVMTTDVNCGQVRGPIQLCFAESVDPVLPLEMSITRMAVTNEKDAEKEKTMGRKQYVPYGLYRAEGFISAALAEKTGFSQDDLDLFFEALMNMFENDRSAARGLMASRKLFAFKHESKLGNAPAHKLFDTVSVKRLIEDGAEARAFSDYEIVVDRAAIPEGVELLELPVE
>NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4
MYADDELLPLSGLQHIAYCERQWALIHLEQIWDESYDTVRGSLFHERVHLEGYSAAKGVRSERGYRLVSRSLGIAGIADVVEFAADGDAAKAVVRPVEYKVGKPKIEEWDRIQVCAQALCLEEMLGCAVGQGDLFYGATRRRERVVLDDALRERVAGLALRMHELFERGETPRAVRGSKCRRCSLADSCLPEAFDHDAVAYWKEAGFEKASQHALCDEL
>NZ_LT900217.1|WP_096226810.1|398643_399669_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MKKLLNTLYVTNSEAYVCKGDDALVVRVDGEKALQVPFHLLEGIVMFGYLGCSPAVLGACAERGITLSFLDEAGRFLARVEGPVSGNVLLRRAQYRVSDDPDAALHLAQRFVAAKVRNARTVLQRYRRDYPDEADSALDEAIEGLKLREAGAFSAVDADELRGIEGDAAHRYFGVFDRLLRAGDGFAFSGRTRRPPRDPVNAMLSFFYSLLAREVASACETVGLDPQVGFFHRDRPGRASLALDVMEELRAWYVDRFVVSLINRRQVGGADFSSSEASGVVLTDAARKNALGLWQQRKQEQVMHPFLKEKVPVGLVPFLQVQLLARHLRGDLDDYPAFIWR
>NZ_LT900217.1|WP_096226809.1|398350_398641_-|CRISPR-associated-endonuclease-Cas2
MYVLVTYDVETASPQGTCRLRRVAKICVKYGQRVQNSVFECSLDPAQFETMKSELMKAADLTRDSLRFYNLGKNWKRKVEHVGAKEAYDPEGFLCV
>NZ_LT900217.1|WP_096226808.1|396577_397222_-|thermonuclease-family-protein
MASEKQQAGRALRRLARKNPLAALAIAAVLVIGAALGWFGAAGGGVAEDAAPGRDGQATIAPVGDGLQQAQVVRVVDGDTLKVSVPGEADATVRLIGMDTPESVAADEARNCEEGRIASDYAKSLVAPGQTVWLSRDVSDADRYGRLLRYVWIERPDDPADEGEIAGKMLNAILVRDGYAQVKRYKPDTTLHDLFQRWGDEAAADGRGVTYKWA
>NZ_LT900217.1|WP_096226807.1|396185_396587_-|GIY-YIG-nuclease-family-protein
MGVEGGSSPEPDAAPQERPAFYVYVLACADGTLYTGYTNDVEQRARTHNAGKGAKYTRSRTPVEVVAQARFATKHEAMSAEFRFKHLSRRAKDRLLARARTEGFAVVLAELQEAASADAGAAVDDGGHPGGKA
>NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase
MAEDKVEVLRAGCFFCHVRCGVLVTKVNGRITNIEGDPDCPHNKGYTCSRLDKQRYLEGFVYNPNRLKKPLKRVGERGGGQWEEISWDQAFDEIAEKLAELRDEYGPETLAFTEGTARTWSWLHYKFTNLFGSPNTGGNGTICYSSDMWLEPCTYGGFCSDKSDWVNAGLVVLWGRNTIASEPLLWDWVNTNRKERGAKLMVIDPRFSEVAQQADLFLQIRPGTDAALALGWINVIIEEDLYDHEFVDEWCVGFDELRERAKDYPPEKVAEITWIPADKIRESARMYATTKPACLPWGQKGGDASGINASSAIRGKAILRAITGNIDKKGGDQLAPPSRFPPAFYEHYALSQEQRDKMIGNDRFPGLTFKGWDVISQAYPSFYPYSNAPLLFRAMRDGDPYPVKALIVQADNPVMAFSNTKLVVEALMNLDLLVVHDYFMTPTAALADYALPAATWLERPDNCYAVMNHRPMYFGAQARVLERFEGGADVDFRDDYEFFYGLAIRLGQEDKWWGPKAEDMLDFQLAPMGLTHEKFYHDVKYMAGQKKFEKYKEPGYKFLTPSGKVELYSSVIEDLARETGLPFDPLPAFEYPASSVEKHPEWEGVYPLVMITGARFLPFYHSEHRQPGPYRNLHPDPIFDIHPDTAIDLDIRDGDWCWIETHMGRIKQRARKTSIVDPRVISVQHDWWFPEKDQALPSLFGAFESNANVLLDDDPDSLDQLIGAWQQTGVAAKVYKCEEQDR
>NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein
MAADLDKLFGIDPDAVAKLKELGIATIEEFYDVAKYADSRAELSEKTGVDPFKLEEWSSTAGNFILMSNCEW
>NZ_LT900217.1|WP_096226819.1|411636_412416_+|TetR-family-transcriptional-regulator
MSPKRPDAKLRLAEAFVRLVETMPAERITVNMIAEQAGKHRKTFYYHFGDKEQLVVWLFRYDLACGLLDKFPEDLLVWETGSPESTLAAFPFYARKIEDSGRIYNAPFFAALSYSLERRRTYYRRMFSTRGPGTLDFYLHQLFFPVIREDILFLIDRRVEEQAPLVRQAVRERLTGNAGVDFLAEFYTGAFLSRFVERLNYTSARRTARDILPFENVVHDSLAALIRQEVEKAASEIGGMPGEIAKPQAEGGFPCASPA
>NZ_LT900217.1|WP_096226820.1|412397_412655_+|zinc-ribbon-domain-containing-protein
MCIPCVMCGACMADGSGERIDDGRCPECGEPVPDNAVSCPKCFTFLYRPSDMMASTIKKYGANETHATAGSDEPGKPGKTGEPAG
>NZ_LT900217.1|WP_096226821.1|413899_415060_-|GNAT-family-N-acetyltransferase
MKIAISSCLLGEPCRYDGRSCPSEAARLLQGLDGVELVPVCPEVLGGLPVPRSPSEIDAAERVLRVTSAEGADVTAAFMAGAQAALEAVGEGGCKLAVLKAKSPSCGCGLVYDGTFSGALVPGYGAAARLLRTEGVRVVDEEQLAAVLASSAARHPDALPALFAETSAACPVLETERLVLRAIGPEDAEDVFAYCSDPDVGADAGWPVHRTLDDSRAFIEAVACEPHVFGVFEKLSAADGADGSDGAVSEPCTGPCIGSVGLIPDPQRRNVDALMLGYSLAKPAWGRGYMTEASREVIRYGFEELALGLISCTHYLFNDRSRRVIEKCGFEREGIIHAAEPAPDGTMQDLETYYLTRVSWEEASRESAPLCANPKLWQSTQEVRAE
>NZ_LT900217.1|WP_154270023.1|415233_415377_+|hypothetical-protein
MPKSAPSGEVATAMTAVKMTCMAGLPSLKVRHNFAGVKASPAAQAED
>NZ_LT900217.1|WP_087190831.1|415575_415803_-|helix-turn-helix-transcriptional-regulator
MGVTQDNKYERLGKSIREQRLAQGLSQRKLAGMIGQPNSHTYITRVEQGKIKIGLEQLGRIADALGVEVRDLIDF
>NZ_LT900217.1|WP_096226822.1|416102_416324_-|helix-turn-helix-transcriptional-regulator
MRTSSETQRRLGLRIKDLREERGLSQYACAPWLGVSRTYLADVECGRRNVSLATLDSIARGLDVSLEELLRGV
>NZ_LT900217.1|WP_096226823.1|416436_416655_+|helix-turn-helix-transcriptional-regulator
MAVISKLGRMMEERGTGTIELAARVGITPVNLSRIKTGRVRSIRFSTLNALCRELECEPGDILGYSPDEKPG
>NZ_LT900217.1|WP_096228549.1|416721_417294_+|NUDIX-hydrolase
MALIDDIRAYEPFNEQEAVDRLAILRALADDPHVFDRSAPAHMACSIWTVDPDKQRTLMVYHNLYDSWSWIGGHADGERDLARVALRELEEETGVAGARLVPCGPGGIFSLEVLTVDGHEKRGRYVGSHLHLNVTYLAVASPEEPLRVKPDENSGVRWVDLDDVCAVSTEPWIADRIYRKLIEKLAGVAL

Crispr_ID: NZ_LT900217_4

• CRISPR_ID: NZ_LT900217_4
• CRISPR_location: 412770-413801
• CRISPR_type: TypeI
• Repeat_type: I-C:NA
• Spacer_info: 15 spacers
• Cas_protein_info: cas3,cas5,cas8c,cas7,cas4

Consensus repeat of NZ_LT900217_4

Consensus_repeat	Method
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CRISPRCasFinder
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CRT
GTTTCAACCCACGCGCCCC-TATGGGGCGCGAC	PILER-CR

spacers of NZ_LT900217_4

>4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT
AACGACGAACCGCTTCCCGAGGCGACCTTCAGCG
>4.2|412868|36|NZ_LT900217|CRISPRCasFinder,CRT
GGCGACCAGCTGCCCCGGGGCCTTGGGCGGCTCGCA
>4.3|412936|33|NZ_LT900217|CRISPRCasFinder,CRT
GTGTCGGTTACGTACGGGCCGTGGTAGTCGTTG
>4.4|413001|34|NZ_LT900217|CRISPRCasFinder,CRT
CGCAGAGGACCCACGCCGGCTCGCCAGCCAGCGC
>4.5|413067|34|NZ_LT900217|CRISPRCasFinder,CRT
ACGCCTGTATGCGCGGCGCGTCCGATTCCCAGTC
>4.6|413133|34|NZ_LT900217|CRISPRCasFinder,CRT
GCTCGCCAACGGGAGCGTCAATGCGTCCAAACTC
>4.7|413199|35|NZ_LT900217|CRISPRCasFinder,CRT
CTCTACGGTCACGCCAAGGCTTCGCAGACTACGCC
>4.8|413266|35|NZ_LT900217|CRISPRCasFinder,CRT
GAGCGCATGCACCTCACTCCCCCGCCCTGCTGCGA
>4.9|413333|37|NZ_LT900217|CRISPRCasFinder,CRT
CACGGGGTTCCGCCGTGGCGAGGTGTCCGGCTTCCAG
>4.10|413402|33|NZ_LT900217|CRISPRCasFinder,CRT
GACGGGGATGTGGGCCAATAGGTATTCGAGCAG
>4.11|413467|35|NZ_LT900217|CRISPRCasFinder,CRT
TGCGTAGACATGGGGTACACGTGGGACGGCATGAT
>4.12|413534|37|NZ_LT900217|CRISPRCasFinder,CRT
CGGTTCCTCCGCTCCTGATGATTTCTGGAGGCATCTT
>4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT
ACCGTCGTAGACGCCACCGGCAAGGTCGTGGCCG
>4.14|413669|33|NZ_LT900217|CRISPRCasFinder,CRT
TCCAACGCTGCTCATAGCAGACGGAACAGCCGT
>4.15|413734|36|NZ_LT900217|CRISPRCasFinder,CRT
CACGGCCTTCTTGGCGTCGGCCGTGCATTCGTCGAT
>4.16|412804|34|NZ_LT900217|PILER-CR
AACGACGAACCGCTTCCCGAGGCGACCTTCAGCG
>4.17|412870|36|NZ_LT900217|PILER-CR
GGCGACCAGCTGCCCCGGGGCCTTGGGCGGCTCGCA
>4.18|412938|33|NZ_LT900217|PILER-CR
GTGTCGGTTACGTACGGGCCGTGGTAGTCGTTG
>4.19|413003|34|NZ_LT900217|PILER-CR
CGCAGAGGACCCACGCCGGCTCGCCAGCCAGCGC
>4.20|413069|34|NZ_LT900217|PILER-CR
ACGCCTGTATGCGCGGCGCGTCCGATTCCCAGTC
>4.21|413135|34|NZ_LT900217|PILER-CR
GCTCGCCAACGGGAGCGTCAATGCGTCCAAACTC
>4.22|413201|35|NZ_LT900217|PILER-CR
CTCTACGGTCACGCCAAGGCTTCGCAGACTACGCC
>4.23|413268|35|NZ_LT900217|PILER-CR
GAGCGCATGCACCTCACTCCCCCGCCCTGCTGCGA
>4.24|413335|37|NZ_LT900217|PILER-CR
CACGGGGTTCCGCCGTGGCGAGGTGTCCGGCTTCCAG
>4.25|413404|33|NZ_LT900217|PILER-CR
GACGGGGATGTGGGCCAATAGGTATTCGAGCAG
>4.26|413469|35|NZ_LT900217|PILER-CR
TGCGTAGACATGGGGTACACGTGGGACGGCATGAT
>4.27|413536|37|NZ_LT900217|PILER-CR
CGGTTCCTCCGCTCCTGATGATTTCTGGAGGCATCTT
>4.28|413605|34|NZ_LT900217|PILER-CR
ACCGTCGTAGACGCCACCGGCAAGGTCGTGGCCG
>4.29|413671|33|NZ_LT900217|PILER-CR
TCCAACGCTGCTCATAGCAGACGGAACAGCCGT
>4.30|413736|36|NZ_LT900217|PILER-CR
CACGGCCTTCTTGGCGTCGGCCGTGCATTCGTCGAT

CRISPR arrays and Neighbor proteins around NZ_LT900217_4

CRISPR arrays

The CRISPR arrays of NZ_LT900217_4

>merge|NZ_LT900217|4|412770-413801|CRISPRCasFinder,CRT,PILER-CR
GATTCAACCCGCGCGCCCCTGTGGGGCGCGACAACGACGAACCGCTTCCCGAGGCGACCTTCAGCGGTTTCAACCCACGCGCCCCTATGGGGCGCGACGGCGACCAGCTGCCCCGGGGCCTTGGGCGGCTCGCAGTTTCAACCCACGCGCCCCTATGGGGCGCGACGTGTCGGTTACGTACGGGCCGTGGTAGTCGTTGGTTTCAACCCACGCGCCCCTATGGGGCGCGACCGCAGAGGACCCACGCCGGCTCGCCAGCCAGCGCGTTTCAACTCACACGCCCCTATGGGGCGCGACACGCCTGTATGCGCGGCGCGTCCGATTCCCAGTCGTTTCAACTCACGCGCCCCTATGGGGCGCGACGCTCGCCAACGGGAGCGTCAATGCGTCCAAACTCGTTTCAACCCACGCGCCCCTATGGGGCGCGACCTCTACGGTCACGCCAAGGCTTCGCAGACTACGCCGTTTCAACCCACGCGCCCCTATGGGGCGCGACGAGCGCATGCACCTCACTCCCCCGCCCTGCTGCGAGTTTCAACCCACGCGCCCCTATGGGGCGCGACCACGGGGTTCCGCCGTGGCGAGGTGTCCGGCTTCCAGGTTTCAACCCACGCGCCCCTATGGGGCGCGACGACGGGGATGTGGGCCAATAGGTATTCGAGCAGGTTTCAACCCACGCGCCCCTATGGGGCGCGACTGCGTAGACATGGGGTACACGTGGGACGGCATGATGTTTCAACCCACGCGCCCCTATGGGGCGCGACCGGTTCCTCCGCTCCTGATGATTTCTGGAGGCATCTTGTTTCAACCCACGCGCCCCTATGGGGCGCGACACCGTCGTAGACGCCACCGGCAAGGTCGTGGCCGGTTTCAACCCACGCGCCCCTATGGGGCGCGACTCCAACGCTGCTCATAGCAGACGGAACAGCCGTGTTTCAACCCACGCGCCCCTATGGGGCGCGACCACGGCCTTCTTGGCGTCGGCCGTGCATTCGTCGATGTTTCAACCCACGCGCCCCTATGGGGCGCGAC

>NZ_LT900217|4|4|412770-413801|CRISPRCasFinder
GATTCAACCCGCGCGCCCCTGTGGGGCGCGAC	AACGACGAACCGCTTCCCGAGGCGACCTTCAGCG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GGCGACCAGCTGCCCCGGGGCCTTGGGCGGCTCGCA
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GTGTCGGTTACGTACGGGCCGTGGTAGTCGTTG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CGCAGAGGACCCACGCCGGCTCGCCAGCCAGCGC
GTTTCAACTCACACGCCCCTATGGGGCGCGAC	ACGCCTGTATGCGCGGCGCGTCCGATTCCCAGTC
GTTTCAACTCACGCGCCCCTATGGGGCGCGAC	GCTCGCCAACGGGAGCGTCAATGCGTCCAAACTC
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CTCTACGGTCACGCCAAGGCTTCGCAGACTACGCC
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GAGCGCATGCACCTCACTCCCCCGCCCTGCTGCGA
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CACGGGGTTCCGCCGTGGCGAGGTGTCCGGCTTCCAG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GACGGGGATGTGGGCCAATAGGTATTCGAGCAG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	TGCGTAGACATGGGGTACACGTGGGACGGCATGAT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CGGTTCCTCCGCTCCTGATGATTTCTGGAGGCATCTT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	ACCGTCGTAGACGCCACCGGCAAGGTCGTGGCCG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	TCCAACGCTGCTCATAGCAGACGGAACAGCCGT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CACGGCCTTCTTGGCGTCGGCCGTGCATTCGTCGAT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC

>NZ_LT900217|4|3|412770-413801|CRT
GATTCAACCCGCGCGCCCCTGTGGGGCGCGAC	AACGACGAACCGCTTCCCGAGGCGACCTTCAGCG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GGCGACCAGCTGCCCCGGGGCCTTGGGCGGCTCGCA
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GTGTCGGTTACGTACGGGCCGTGGTAGTCGTTG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CGCAGAGGACCCACGCCGGCTCGCCAGCCAGCGC
GTTTCAACTCACACGCCCCTATGGGGCGCGAC	ACGCCTGTATGCGCGGCGCGTCCGATTCCCAGTC
GTTTCAACTCACGCGCCCCTATGGGGCGCGAC	GCTCGCCAACGGGAGCGTCAATGCGTCCAAACTC
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CTCTACGGTCACGCCAAGGCTTCGCAGACTACGCC
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GAGCGCATGCACCTCACTCCCCCGCCCTGCTGCGA
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CACGGGGTTCCGCCGTGGCGAGGTGTCCGGCTTCCAG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	GACGGGGATGTGGGCCAATAGGTATTCGAGCAG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	TGCGTAGACATGGGGTACACGTGGGACGGCATGAT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CGGTTCCTCCGCTCCTGATGATTTCTGGAGGCATCTT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	ACCGTCGTAGACGCCACCGGCAAGGTCGTGGCCG
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	TCCAACGCTGCTCATAGCAGACGGAACAGCCGT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC	CACGGCCTTCTTGGCGTCGGCCGTGCATTCGTCGAT
GTTTCAACCCACGCGCCCCTATGGGGCGCGAC

>NZ_LT900217|4|3|412772-413801|PILER-CR
TTCAACCCGCGCGCCCCTGTGGGGCGCGACAA	CGACGAACCGCTTCCCGAGGCGACCTTCAGCGGT
TTCAACCCACGCGCCCCTATGGGGCGCGACGG	CGACCAGCTGCCCCGGGGCCTTGGGCGGCTCGCAGT
TTCAACCCACGCGCCCCTATGGGGCGCGACGT	GTCGGTTACGTACGGGCCGTGGTAGTCGTTGGT
TTCAACCCACGCGCCCCTATGGGGCGCGACCG	CAGAGGACCCACGCCGGCTCGCCAGCCAGCGCGT
TTCAACTCACACGCCCCTATGGGGCGCGACAC	GCCTGTATGCGCGGCGCGTCCGATTCCCAGTCGT
TTCAACTCACGCGCCCCTATGGGGCGCGACGC	TCGCCAACGGGAGCGTCAATGCGTCCAAACTCGT
TTCAACCCACGCGCCCCTATGGGGCGCGACCT	CTACGGTCACGCCAAGGCTTCGCAGACTACGCCGT
TTCAACCCACGCGCCCCTATGGGGCGCGACGA	GCGCATGCACCTCACTCCCCCGCCCTGCTGCGAGT
TTCAACCCACGCGCCCCTATGGGGCGCGACCA	CGGGGTTCCGCCGTGGCGAGGTGTCCGGCTTCCAGGT
TTCAACCCACGCGCCCCTATGGGGCGCGACGA	CGGGGATGTGGGCCAATAGGTATTCGAGCAGGT
TTCAACCCACGCGCCCCTATGGGGCGCGACTG	CGTAGACATGGGGTACACGTGGGACGGCATGATGT
TTCAACCCACGCGCCCCTATGGGGCGCGACCG	GTTCCTCCGCTCCTGATGATTTCTGGAGGCATCTTGT
TTCAACCCACGCGCCCCTATGGGGCGCGACAC	CGTCGTAGACGCCACCGGCAAGGTCGTGGCCGGT
TTCAACCCACGCGCCCCTATGGGGCGCGACTC	CAACGCTGCTCATAGCAGACGGAACAGCCGTGT
TTCAACCCACGCGCCCCTATGGGGCGCGACCA	CGGCCTTCTTGGCGTCGGCCGTGCATTCGTCGATGT
TTCAACCCACGCGCCCCTATGGGGCGCGAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT900217.1|WP_096226826.1|421895_424460_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl|CDD|235547
NZ_LT900217.1|WP_096226823.1|416436_416655_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|226181
NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein	unknown	unknown	gnl|CDD|372972
NZ_LT900217.1|WP_096226821.1|413899_415060_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|377367
NZ_LT900217.1|WP_096226819.1|411636_412416_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|274100
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|187768
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein	unknown	unknown	gnl|CDD|341491
NZ_LT900217.1|WP_154270023.1|415233_415377_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187534
NZ_LT900217.1|WP_087190831.1|415575_415803_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|197775
NZ_LT900217.1|WP_096226827.1|424498_424954_-|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl|CDD|234568
NZ_LT900217.1|WP_096226820.1|412397_412655_+|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl|CDD|237756
NZ_LT900217.1|WP_096226822.1|416102_416324_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|197775
NZ_LT900217.1|WP_096228549.1|416721_417294_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239646
NZ_LT900217.1|WP_096226824.1|417382_418123_-|SH3-domain-containing-protein	unknown	unknown	gnl|CDD|377965
NZ_LT900217.1|WP_096226825.1|418451_421754_+|SNF2-helicase-associated-domain-containing-protein	unknown	unknown	gnl|CDD|223627
NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239160
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl|CDD|378245

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	1.7e-31	104.3	0.0
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	6.6e-120	394.2	0.0
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	1.1e-79	261.6	0.0
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.6e-55	183.3	0.0
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	3.8e-148	489.1	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT900217.1|WP_096226823.1|416436_416655_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	5.12836e-25
NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein	gnl|CDD|372972	pfam14229, DUF4332, Domain of unknown function (DUF4332). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 134 and 356 amino acids in length. This domain contains helix-hairpin-helix motifs.	0.00195132
NZ_LT900217.1|WP_096226821.1|413899_415060_-|GNAT-family-N-acetyltransferase	gnl|CDD|377367	pfam04463, DUF523, Protein of unknown function (DUF523). Family of uncharacterized bacterial proteins.	4.1994e-62
NZ_LT900217.1|WP_096226819.1|411636_412416_+|TetR-family-transcriptional-regulator	gnl|CDD|274100	TIGR02366, conserved_hypothetical_protein, probable dihydroxyacetone kinase regulator. The seed alignment for this family was built from a set of closely related uncharacterized proteins associated with operons for the type of bacterial dihydroxyacetone kinase that transfers PEP-derived phosphate from a phosphoprotein, as in phosphotransferase system transport, rather than from ATP. Members have a TetR transcriptional regulator domain (pfam00440) at the N-terminus and sequence homology throughout.	8.82923e-12
NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	3.04378e-28
NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.14566e-147
NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein	gnl|CDD|341491	cd17792, CtkA, serine/threonine-protein kinase CtkA and similar proteins. The Helicobacter pylori serine/threonine-protein kinase CtkA (proinflammatory kinase), encoded by the jhp940 gene, has been shown to be secreted by the bacterium and to induce cytokines in gastric epithelial cells. It may play a role in chronic gastric inflammation. CtkA autophosphorylates itself at a threonine residue near the N-terminus and it translocates into cultured human cells. It also enhances phosphorylation of the NF-kappaB p65 subunit at Ser276 in human epithelial cancer cells; phosphorylation at this position is known to activate the transcriptional activity of NF-kappaB.	5.27161e-18
NZ_LT900217.1|WP_096226826.1|421895_424460_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl|CDD|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	7.01024e-138
NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.05853e-98
NZ_LT900217.1|WP_087190831.1|415575_415803_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	8.80089e-11
NZ_LT900217.1|WP_096226827.1|424498_424954_-|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl|CDD|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	5.7198e-43
NZ_LT900217.1|WP_096226820.1|412397_412655_+|zinc-ribbon-domain-containing-protein	gnl|CDD|237756	PRK14559, PRK14559, serine/threonine phosphatase.	0.00153484
NZ_LT900217.1|WP_096226822.1|416102_416324_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	8.78525e-12
NZ_LT900217.1|WP_096228549.1|416721_417294_+|NUDIX-hydrolase	gnl|CDD|239646	cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	4.69486e-40
NZ_LT900217.1|WP_096226824.1|417382_418123_-|SH3-domain-containing-protein	gnl|CDD|377965	pfam08239, SH3_3, Bacterial SH3 domain.	1.13142e-10
NZ_LT900217.1|WP_096226825.1|418451_421754_+|SNF2-helicase-associated-domain-containing-protein	gnl|CDD|223627	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair].	7.53921e-116
NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase	gnl|CDD|239160	cd02759, MopB_Acetylene-hydratase, The MopB_Acetylene-hydratase CD contains acetylene hydratase (Ahy) and other related proteins. The acetylene hydratase of Pelobacter acetylenicus is a tungsten iron-sulfur protein involved in the fermentation of acetylene to ethanol and acetate. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	3.52915e-154
NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.14858e-56
NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0

Protein sequences

>NZ_LT900217.1|WP_096226820.1|412397_412655_+|zinc-ribbon-domain-containing-protein
MCIPCVMCGACMADGSGERIDDGRCPECGEPVPDNAVSCPKCFTFLYRPSDMMASTIKKYGANETHATAGSDEPGKPGKTGEPAG
>NZ_LT900217.1|WP_096226819.1|411636_412416_+|TetR-family-transcriptional-regulator
MSPKRPDAKLRLAEAFVRLVETMPAERITVNMIAEQAGKHRKTFYYHFGDKEQLVVWLFRYDLACGLLDKFPEDLLVWETGSPESTLAAFPFYARKIEDSGRIYNAPFFAALSYSLERRRTYYRRMFSTRGPGTLDFYLHQLFFPVIREDILFLIDRRVEEQAPLVRQAVRERLTGNAGVDFLAEFYTGAFLSRFVERLNYTSARRTARDILPFENVVHDSLAALIRQEVEKAASEIGGMPGEIAKPQAEGGFPCASPA
>NZ_LT900217.1|WP_123649863.1|411043_411262_+|hypothetical-protein
MAADLDKLFGIDPDAVAKLKELGIATIEEFYDVAKYADSRAELSEKTGVDPFKLEEWSSTAGNFILMSNCEW
>NZ_LT900217.1|WP_096226817.1|408654_410883_+|molybdopterin-dependent-oxidoreductase
MAEDKVEVLRAGCFFCHVRCGVLVTKVNGRITNIEGDPDCPHNKGYTCSRLDKQRYLEGFVYNPNRLKKPLKRVGERGGGQWEEISWDQAFDEIAEKLAELRDEYGPETLAFTEGTARTWSWLHYKFTNLFGSPNTGGNGTICYSSDMWLEPCTYGGFCSDKSDWVNAGLVVLWGRNTIASEPLLWDWVNTNRKERGAKLMVIDPRFSEVAQQADLFLQIRPGTDAALALGWINVIIEEDLYDHEFVDEWCVGFDELRERAKDYPPEKVAEITWIPADKIRESARMYATTKPACLPWGQKGGDASGINASSAIRGKAILRAITGNIDKKGGDQLAPPSRFPPAFYEHYALSQEQRDKMIGNDRFPGLTFKGWDVISQAYPSFYPYSNAPLLFRAMRDGDPYPVKALIVQADNPVMAFSNTKLVVEALMNLDLLVVHDYFMTPTAALADYALPAATWLERPDNCYAVMNHRPMYFGAQARVLERFEGGADVDFRDDYEFFYGLAIRLGQEDKWWGPKAEDMLDFQLAPMGLTHEKFYHDVKYMAGQKKFEKYKEPGYKFLTPSGKVELYSSVIEDLARETGLPFDPLPAFEYPASSVEKHPEWEGVYPLVMITGARFLPFYHSEHRQPGPYRNLHPDPIFDIHPDTAIDLDIRDGDWCWIETHMGRIKQRARKTSIVDPRVISVQHDWWFPEKDQALPSLFGAFESNANVLLDDDPDSLDQLIGAWQQTGVAAKVYKCEEQDR
>NZ_LT900217.1|WP_123649862.1|406203_407448_-|HipA-domain-containing-protein
MMRESDIYELRLFDRILIVFRMSRGEYGDLSVEVVSADSSASRLLPLSFDGETTDERLFEWIRRRRIPKNRAYVDEILKSCGIESDDAKSIIDVSKGLSLNDSYWVVPRGFEGSFAEWNLYENEMSAALQLVAYTGVASDALADGGIPSELTNSGMFPKAWRAEGSKRILYKAGHLFEGANVGKEPYSEYLSFQIAHRMGIDAVPYDLALWKGKLCSTCELFCSKDVAFVPFGFAVPTERFKNMNLREALAYFASLGEEALERFKSMLVFDALIGNEDRHMGNYGVLRDSATGAVKGMAPLFDHNVGLFAGAMPDELNVDAMMRKASIGRGAFAPSLDEQAALVIGPVQKAQLERLAGFVFERHPVMDEFDESDTRNYFSDERLKCLNGYVARRAEVLLELPTVDPGKIRQDVG
>NZ_LT900217.1|WP_123649861.1|403749_406047_-|CRISPR-associated-helicase-Cas3'
MPEYYAHTGSDLDDVSTWQTLSEHANEVARLAEAFAEKFGMGVWGRTLGLLHDAGKASVGFRRRLEGGKPVDHSTAGAKVAVGRYGVCGQFMAYALCGHHGGMPNGKIWSNPPSSNSKLLRSPLKDRLGGEIESYNAFFELVEAGQINLPDAARLGAPMHPGRTFESTARKAFSMFVLEHFLYSSLVDGDYLDTERFMTPEASEAREARELANMEELLAKLESHMAELMEKAGDTSVNRARRSVYEDCLATAVQPSGLYTMTVPTGGGKTLSSMAFGLRHAVEQGMERVIVAIPYTSIVEQTAATLKAIFGAENVLEHHSNYDFRDLDDEEKARQRLAIQNWDAPIVVTTNVQLFESLFSNKPGKSRKVHNMARSVIILDEAQTLPDELLKPSLAMLEELAAGYGSSMVLCTATQPALEGLWPFGAEPREIVQHRDLFDEAFGGRVAYESLGTIEQADLVERIAAGREVLCVVGTRGLARAIYDNVVARAVERGDLSDVKRAFDEGYFHLSAFMIPGHRSAMLERIRERLDRKERCVVVSTQLVEAGVDVDFPEVYRELAGLDSVVQAAGRCNREGRLPGAGTVRVFELSVDGERQKTETWLEKMKGIARDVVRENGGRVDEGLIPAFFQTRYGSECLDAKGIFQKTATKNLISDRFETMPFEQCALDYRIIQDDSVPVFVPWGAEGRALLKELLASENPAGMAMRLQRFSVGVPIWSIEGYKQADAVEELEPFLILKEDGCRSFYREDVGLVAAGEEVLELLSC
>NZ_LT900217.1|WP_096226814.1|403029_403695_-|type-I-C-CRISPR-associated-protein-Cas5
MGYGIKVLARGPRACFTRPEMKAERVSYDVITPSAARGLIEAVYWKPAIRWHIDRIEVLNEIRFDTFRRNELGGKLSYRNAKAAMERGEEVWTAANDDRQQRATMYLKDVAYLIDAHFTLTEQAGEDDTVEKHYNIALRRLRKGQCFNQPYFGCREFPADVSIMEEPGDRPKSFYAGSGGQDLGFMLFDIDFDHDMEPQFFRASMRDGVIDVARAREAVVR
>NZ_LT900217.1|WP_096226813.1|401206_403033_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQELNRYYERLLADPERDVPARHWSVEKAAWELKLSRDGRLLGAYQLTAGTGKELRRFVSLRVPEHTTRSGTGMLPFFLCDNAAYLLGYDEKRGPDKLASAHALHEAVLGECDDEGAQAVLRFFEREDRDADLDEGVRSELAEGGGFAVFRLDGDRGRLHERPAVAAAWASYCDGQAAGEVVGQCAVTGEEGPLARLFPQVTGVPGAQSAGASLVSFNLQSFESYGKSQAYNASVSEAAAFNAGSALRQLCADREHRVRIGETTVVFWADRPAPAEDLVMLGILDPDELDRAEDQNAVQEVRAALESMERGLPLAGVDTETRYFVLGLAPNAARLAVRFFETSTLGRMAENFGAYLRDVSMADVRARSLRTLLLQTAPMGSADQLPSTLVNGCIEAMLTGRAFPQALYYAVLSRMRSDHARRNSWDMGQRAALLKACLVRRARLGAENSNGEDGAARADEERSLDVDLDKKRANRGYVLGRLFAVMEHAQRSALGEVNATIRDRYIGAASTTPARVFPHLLHNTQNHLSKLRKFNPGLCVKFEKANDEIMAMLDGPALFPKTLDAEDQGEFFVGYHQQRVDLWKKHDDEADAAADAEDADDETETN
>NZ_LT900217.1|WP_096226812.1|400291_401197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MAEPIKNRYDFVFFFDVKNGNPNGDPDAGNMPRIDPDTSRGIVSDVCLKRKIRNYVDLVKGEEIDDPDVAEGELGYKIYVQEAAVLNDRNRKAYVHYDMKPASKKLPKAKEDQLKVTKFMCDNFFDIRAFGAVMTTDVNCGQVRGPIQLCFAESVDPVLPLEMSITRMAVTNEKDAEKEKTMGRKQYVPYGLYRAEGFISAALAEKTGFSQDDLDLFFEALMNMFENDRSAARGLMASRKLFAFKHESKLGNAPAHKLFDTVSVKRLIEDGAEARAFSDYEIVVDRAAIPEGVELLELPVE
>NZ_LT900217.1|WP_096226811.1|399628_400288_-|CRISPR-associated-protein-Cas4
MYADDELLPLSGLQHIAYCERQWALIHLEQIWDESYDTVRGSLFHERVHLEGYSAAKGVRSERGYRLVSRSLGIAGIADVVEFAADGDAAKAVVRPVEYKVGKPKIEEWDRIQVCAQALCLEEMLGCAVGQGDLFYGATRRRERVVLDDALRERVAGLALRMHELFERGETPRAVRGSKCRRCSLADSCLPEAFDHDAVAYWKEAGFEKASQHALCDEL
>NZ_LT900217.1|WP_096226821.1|413899_415060_-|GNAT-family-N-acetyltransferase
MKIAISSCLLGEPCRYDGRSCPSEAARLLQGLDGVELVPVCPEVLGGLPVPRSPSEIDAAERVLRVTSAEGADVTAAFMAGAQAALEAVGEGGCKLAVLKAKSPSCGCGLVYDGTFSGALVPGYGAAARLLRTEGVRVVDEEQLAAVLASSAARHPDALPALFAETSAACPVLETERLVLRAIGPEDAEDVFAYCSDPDVGADAGWPVHRTLDDSRAFIEAVACEPHVFGVFEKLSAADGADGSDGAVSEPCTGPCIGSVGLIPDPQRRNVDALMLGYSLAKPAWGRGYMTEASREVIRYGFEELALGLISCTHYLFNDRSRRVIEKCGFEREGIIHAAEPAPDGTMQDLETYYLTRVSWEEASRESAPLCANPKLWQSTQEVRAE
>NZ_LT900217.1|WP_154270023.1|415233_415377_+|hypothetical-protein
MPKSAPSGEVATAMTAVKMTCMAGLPSLKVRHNFAGVKASPAAQAED
>NZ_LT900217.1|WP_087190831.1|415575_415803_-|helix-turn-helix-transcriptional-regulator
MGVTQDNKYERLGKSIREQRLAQGLSQRKLAGMIGQPNSHTYITRVEQGKIKIGLEQLGRIADALGVEVRDLIDF
>NZ_LT900217.1|WP_096226822.1|416102_416324_-|helix-turn-helix-transcriptional-regulator
MRTSSETQRRLGLRIKDLREERGLSQYACAPWLGVSRTYLADVECGRRNVSLATLDSIARGLDVSLEELLRGV
>NZ_LT900217.1|WP_096226823.1|416436_416655_+|helix-turn-helix-transcriptional-regulator
MAVISKLGRMMEERGTGTIELAARVGITPVNLSRIKTGRVRSIRFSTLNALCRELECEPGDILGYSPDEKPG
>NZ_LT900217.1|WP_096228549.1|416721_417294_+|NUDIX-hydrolase
MALIDDIRAYEPFNEQEAVDRLAILRALADDPHVFDRSAPAHMACSIWTVDPDKQRTLMVYHNLYDSWSWIGGHADGERDLARVALRELEEETGVAGARLVPCGPGGIFSLEVLTVDGHEKRGRYVGSHLHLNVTYLAVASPEEPLRVKPDENSGVRWVDLDDVCAVSTEPWIADRIYRKLIEKLAGVAL
>NZ_LT900217.1|WP_096226824.1|417382_418123_-|SH3-domain-containing-protein
MKMMRTAKLMLGGLAAAVMLTTAVAVPCAFAEEGVTTMATTAPLNLREGANINSNIMDTMPQGTSVQVFGMTQDGWYDVEYNGVRGHCWYQYLDFEGTAEGTVHDGHVTDMYATAPLNVRAQPNTGTSIIGSLAEGQYVPVISKHDGWFKVSFNGQEAYCYGEYLGFGQTGADKCQAAAPEDISNSQMNKLTTTAPLNVRAEPGTDARILGSFAAGESVSTISVEGDWYKVKYGDQTGYCYGDYLE
>NZ_LT900217.1|WP_096226825.1|418451_421754_+|SNF2-helicase-associated-domain-containing-protein
MIPENALAAICSARTLARAEQIAASDRNILTKQVRYDGDEVTLSAFVASSSGWDDRYRTSVCFEDDSGIVLDYSCTCPAYREHDGMCKHCAALMLSYRRAPQRFLGYQAQRTRTTSACIEDYMKRAARASGTQKATGNVDIETTLVFGYRSWSAHFRLSGPQGSYAMKGVSDFVERMRAGEFFSYGKKLAFLHVPAQLTEHARRVALFLDRAVALREQTSAAAYWRYRSSSVVGRDLELSDAEAVELLDLLAGREFAMEEDEAGARRTVRTHVVEEDPRIAVALRPADRGGYRIERTDLLALAAQGERLYVWKDGLFHNCSPEFAQCADFLRNVYDSSESDLYVAEADMPLFCAAALPTIEQHLHVDMPAQIAAYKPVPCQLEFFFDRDDARVTCEAWAAYGEARHLLFGGEVQEEEGAPDAASETEAAAKKAETPPKLSGPLRDERLEARAGELAARYLDAADASLSLADDEAVGALLFGGLTEFRALGTVFTTPAFDRLIRDKKPRVSLGVSLAGNLINLTLDSGDLPARELASLLASYRKRKRFHRLRDGMFLDLQDFDLSQLDRLAADLGLTAKELAAGSAELPAYRAFYLDEEADLARDRSFTRYVEGFRTTDERAYDVPPALADVLRPYQAEGFRWLSARCDAGFGGVLADEMGLGKSVQIITLLLARREQARTVGPSLVVCPASLVYNWLAEFERFAPELDVRAVAGTKRERVQLRREAFEGDGCDVLVTSYDLLRIDAAAWAERGLFCCVLDEAQYIKNPATLTTRAVKRVQAQHRFALTGTPVENRLSELWSIFDFLMPGLLGPYNRFRERFELPIVGGDEETARRLQAVAGPFMLRRLKTDVLRELPDKLESIVYAPLEGEQLRLYAAHEQRLREELTAQRKNRNDRSFDQRKVEVLAELTKLRQLCCDPRLLYENYERGAAKLDAIMELVSSARDAGEKTLVFSQFTSFLDRIAERLDAAGVGYFTITGATPKKRRLALVNAFNADDTPVFLVSLKAGGTGLNLTGASVVVHADPWWNAAAQNQATDRAHRIGQDKVVSVQKVIAKGTIEERIMRLQEAKSDLAEQIVGAGGVSLASLTREDLIDLLQG
>NZ_LT900217.1|WP_096226826.1|421895_424460_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MRQRKQNYITLSCDGEVVPQRGATAPAPESADVAYRLSRMVEEAAAALPLAPNALEAADASEYTAVAPGEAQASSRVRAAVDAQVGTSVPAAKPVALVMARSKAAKRLLQAVADAGFCACAVYTQDRRGEGYLKAAQRAVCLGERYSDALFCNGHAVLQAADECGAAVVLLSDEALPLAEVDSFLARAAARGVRVFRAMSPDASALGWILCSTDKPPLDDGTWRTCPRCGLSFDEASLASGHCTCPSCGGYFRMSSAERIDDTLDAGSFAEWNRSVPETDPLGFPGYGGKLAAQRAKTGLEEAVRTGEGRIAGLRVAVGIMESQFFMGSMGSVVGEKLCRLVERATDERLPVVIFTASGGARMQEGLVSLMQMAKVSCALARHAEAGLPYLSVLTDPTTGGVTASFAMQGDVILAEPGALIGFAGQRVIRDTIKQELPEGFQTAEFALEHGLIDAIVERSEMRATLAHLLAIHLATARSNRGAHEPGDRAILVDFQTVRDNLEHGTDTYNTVTYGLLEPEGGLPFGESSPWRPRRAQQLLGGLAGRLERKAPGAVSPKRLGKVLARGGFDAEGGASLEVNGISADISAAAAADSGNRAWQSVQLARNVHRPTARTYIDALVDGFIELHGDRSFGDDAAVVAGVGWIGGRAVTVIAQEKGADLKERIRRNFGCPQPEGYRKSLRLMRQAEKFGRPVVCLVDTQGAFCGMEAEERGQGNAIADNLLALAGLRVPVVSVLVGEGGSGGALALALADRVAMQEHAVYSVLSPEGFASILWKDRTRAPEAAAVMKMSAAEACQMGIVDAVLSEGPAPAHENPEAAAEQVRAYVSTALAELAEQPTDALLQARYERFAKF
>NZ_LT900217.1|WP_096226827.1|424498_424954_-|3-hydroxyacyl-ACP-dehydratase-FabZ
MDIEYPCGRDVVEAVLPHREPFSWVSRVVACEPGVEVTAELDVDPALPLFAGHFPGHPVLPGVIIMEALAQAASFCILVERGAERSIGFLTGIDGAKFRRQVSPGETLTLKGRIVKSSSRLCVAEVEASVDGQLCASATQKYVLAKAEAQA

Crispr_ID: NZ_LT900217_5

• CRISPR_ID: NZ_LT900217_5
• CRISPR_location: 1648429-1648548
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers
• Cas_protein_info: DinG

Consensus repeat of NZ_LT900217_5

Consensus_repeat	Method
ATGTTTCACGTGAAACA	PILER-CR

spacers of NZ_LT900217_5

>5.1|1648446|40|NZ_LT900217|PILER-CR
TTGACTTAAGGGGAAGAGTCAAAATAAAAATGATCGCCGA
>5.2|1648503|29|NZ_LT900217|PILER-CR
ATCGGCGATTTCTCAAGCAAGCACCAAGG

CRISPR arrays and Neighbor proteins around NZ_LT900217_5

CRISPR arrays

The CRISPR arrays of NZ_LT900217_5

>merge|NZ_LT900217|5|1648429-1648548|PILER-CR
ATGTTTCACGTGAAACATTGACTTAAGGGGAAGAGTCAAAATAAAAATGATCGCCGATTGTTTCACGTGAAACAATCGGCGATTTCTCAAGCAAGCACCAAGGATGTTTCACGTGAAACA

>NZ_LT900217|5|4|1648429-1648548|PILER-CR
ATGTTTCACGTGAAACA	TTGACTTAAGGGGAAGAGTCAAAATAAAAATGATCGCCGA
TTGTTTCACGTGAAACA	ATCGGCGATTTCTCAAGCAAGCACCAAGG
ATGTTTCACGTGAAACA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT900217.1|WP_096227525.1|1658545_1659031_+|VanZ-family-protein	unknown	unknown	gnl|CDD|377417
NZ_LT900217.1|WP_123649808.1|1661044_1661359_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT900217.1|WP_096227517.1|1643533_1643935_-|DUF559-domain-containing-protein	unknown	unknown	gnl|CDD|238509
NZ_LT900217.1|WP_096228620.1|1641023_1641257_+|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl|CDD|376620
NZ_LT900217.1|WP_096227514.1|1640674_1641004_+|ribonuclease-P-protein-component	unknown	unknown	gnl|CDD|376392
NZ_LT900217.1|WP_096227520.1|1647452_1648400_+|D-alanine--D-alanine-ligase	unknown	unknown	gnl|CDD|234948
NZ_LT900217.1|WP_096227524.1|1657841_1658507_+|HAD-family-hydrolase	unknown	unknown	gnl|CDD|223620
NZ_LT900217.1|WP_096228622.1|1654010_1657256_+|aminopeptidase	unknown	unknown	gnl|CDD|235906
NZ_LT900217.1|WP_087190763.1|1659049_1659292_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NZ_LT900217.1|WP_096227516.1|1642809_1643463_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl|CDD|234637
NZ_LT900217.1|WP_096227526.1|1659969_1661070_+|LCP-family-protein	unknown	unknown	gnl|CDD|224235
NZ_LT900217.1|WP_096228621.1|1644292_1645174_+|ParA-family-protein	unknown	unknown	gnl|CDD|379293
NZ_LT900217.1|WP_096227519.1|1646321_1647371_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl|CDD|184686
NZ_LT900217.1|WP_096227515.1|1641305_1642076_+|YidC/Oxa1-family-membrane-protein-insertase	unknown	unknown	gnl|CDD|376730
NZ_LT900217.1|WP_096227522.1|1649344_1652440_+|DNA-polymerase-III-subunit-epsilon	DinG	COG1199_DinG_CAS-IV-A	gnl|CDD|236148
NZ_LT900217.1|WP_096227518.1|1645304_1646228_+|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl|CDD|275105
NZ_LT900217.1|WP_096227523.1|1652468_1653860_+|hypothetical-protein	unknown	unknown	gnl|CDD|235334
NZ_LT900217.1|WP_166521699.1|1657400_1657553_+|hypothetical-protein	unknown	unknown	unknown
NZ_LT900217.1|WP_087191150.1|1642167_1642701_+|KH-domain-containing-protein	unknown	unknown	gnl|CDD|224760
NZ_LT900217.1|WP_096227521.1|1648559_1649201_-|hypothetical-protein	unknown	unknown	unknown

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_LT900217.1|WP_096227522.1|1649344_1652440_+|DNA-polymerase-III-subunit-epsilon	DinG	COG1199_DinG_CAS-IV-A	1.2e-99	329.1	0.6

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_LT900217.1|WP_096227517.1|1643533_1643935_-|DUF559-domain-containing-protein	gnl|CDD|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	8.48436e-28
NZ_LT900217.1|WP_096227522.1|1649344_1652440_+|DNA-polymerase-III-subunit-epsilon	gnl|CDD|236148	PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated.	2.99351e-132
NZ_LT900217.1|WP_096227514.1|1640674_1641004_+|ribonuclease-P-protein-component	gnl|CDD|376392	pfam00825, Ribonuclease_P, Ribonuclease P.	2.90729e-19
NZ_LT900217.1|WP_096227520.1|1647452_1648400_+|D-alanine--D-alanine-ligase	gnl|CDD|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	8.9089e-153
NZ_LT900217.1|WP_096227524.1|1657841_1658507_+|HAD-family-hydrolase	gnl|CDD|223620	COG0546, Gph, Predicted phosphatases [General function prediction only].	3.52522e-51
NZ_LT900217.1|WP_096228622.1|1654010_1657256_+|aminopeptidase	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	1.06057e-06
NZ_LT900217.1|WP_087190763.1|1659049_1659292_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.68967e-13
NZ_LT900217.1|WP_096227516.1|1642809_1643463_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl|CDD|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	2.6042e-35
NZ_LT900217.1|WP_096227526.1|1659969_1661070_+|LCP-family-protein	gnl|CDD|224235	COG1316, LytR, Transcriptional regulator [Transcription].	4.38328e-49
NZ_LT900217.1|WP_096228621.1|1644292_1645174_+|ParA-family-protein	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	8.83759e-92
NZ_LT900217.1|WP_096227519.1|1646321_1647371_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl|CDD|184686	PRK14454, PRK14454, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN.	6.31465e-134
NZ_LT900217.1|WP_096227515.1|1641305_1642076_+|YidC/Oxa1-family-membrane-protein-insertase	gnl|CDD|376730	pfam02096, 60KD_IMP, 60Kd inner membrane protein.	5.47828e-60
NZ_LT900217.1|WP_096228620.1|1641023_1641257_+|membrane-protein-insertion-efficiency-factor-YidD	gnl|CDD|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	3.57651e-34
NZ_LT900217.1|WP_096227518.1|1645304_1646228_+|ParB/RepB/Spo0J-family-partition-protein	gnl|CDD|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	4.69059e-80
NZ_LT900217.1|WP_096227523.1|1652468_1653860_+|hypothetical-protein	gnl|CDD|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.00490192
NZ_LT900217.1|WP_096227525.1|1658545_1659031_+|VanZ-family-protein	gnl|CDD|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.86493e-20
NZ_LT900217.1|WP_087191150.1|1642167_1642701_+|KH-domain-containing-protein	gnl|CDD|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	6.12974e-36

Protein sequences

>NZ_LT900217.1|WP_096227520.1|1647452_1648400_+|D-alanine--D-alanine-ligase
MVACVDPQHCHVALLVGGISGEREVSLASGEGAHQALAEAGFQVTVLDPADKEDLKKLIDGGFDVAFICLHGKYGEDGTLQGMLEMIGLPYIGSGVWSSALAMDKVKSKVFYQAAGIPTPPSVTLRSANPADIDMIVDSLGEHCVVKPATEGSALGVFIVDERKALQEVIERVRELDNEILIERYIKGKELTVAVIGNDDPRALPIIEIVPVNDFYDYEAKYKPGASQHLCPAPLSEETTKQIQEMAVKAHKVLACAGVSRSDFILDDEGKWWILETNTIPGMTGTSLLPDAARADGISFPELCTMLIEFALEKK
>NZ_LT900217.1|WP_096227519.1|1646321_1647371_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MRYNAAMIKPIKTYSLEELQQLMKELGQPAFRAKQLYEWLYLHNASSYDEMTNLPRTLREQLSIDYPLFVSNVADSQTSQDGTTKYVISYHDGARVETVAIPSSDGRLTVCCSTQAGCAMGCAFCATGKEGFTRNLSAGEIVEQVLIAQTRMGKRVSNVVAMGQGEPFLNYEQTLSALRILNDERLLNIGARHITLSTCGILSGIDRLGTEPEQFTLAVSLHAAIQRTRDKIMPGVANYELGKLKTALLKYLERTNRRITLEYAMMNSVNDNENDLKALIEFCEGLLCHVNLIPLNEIEESEFSPSKIQTMNQWYLSLNKSGIETTIRHSRGSDIAGACGQLKNAVKHL
>NZ_LT900217.1|WP_096227518.1|1645304_1646228_+|ParB/RepB/Spo0J-family-partition-protein
MKRAYSAPVSAEAPAPPLVPQDKGVSADNFIKDEDHVTIKSVVQRRTDEVPLESISPNPDQPRTNFKQEEIEELATSIQKDGLLQPILVRPVGSHKYQIIAGERRWQACRSIGMKTVPIRIKEADDDKALELALVENIQRSDLNPIEEAYGYRRMMERRNLTQSEVAQAMSKGRSTVANALRLLELPEEAQQLLFEEKITAGHARAILSIPSKEGRLKLTQKLVEEKLSVRETEAIARLLAGKKSPESAQTRQPTPKSFKTVAKALRDVLHTNVRVKTVQGKNKIEIEFKDEEELEKLFEELIASTS
>NZ_LT900217.1|WP_096228621.1|1644292_1645174_+|ParA-family-protein
MVIEDIEVVEREVVPEVEKDIPLKPIKSFKDKAPVKHVVGQTKVMAIINQKGGVGKSTTAINLSAALGEMGKQVLLVDLDPQGNSSSGLGIEKSRVEHCVYDVLLNDVPVEGVIIPDVCEGLDVIPATINLAGAEVELVAEMARENRLRDSVGSLRGKYDYVFIDCPPSLGLLTVNALVAADKLLIPIQCEFYALEGVTKLLDSMKRVKTRLNPSLDIFGVLLTMYDGRTTLSKQVVEEVRNYFGKIVFDTLIPRTVKLSEAPSFGQPITQYDPSGKGAQSYVDLAKEVINRG
>NZ_LT900217.1|WP_096227517.1|1643533_1643935_-|DUF559-domain-containing-protein
MNRAARTRLAERARYMRKNMTEAEKILWFRFLREYPIRFSNQIIVGPYIVDFYCRKVRLSIELDGSQHYEEVHRKYDEIRTTYLEMEVIKELRFPNSYIWDHFEGVCETIHREVELRRNDLSSIPLSEVRNKR
>NZ_LT900217.1|WP_096227516.1|1642809_1643463_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MQHEALIDLYLEKILEANEKTNLTRISSLEEARKLHIEDSLAGLEELMKAPEGLYGDLGSGGGFPGVPLALESGRKTILVDSVQKKMAIVGTVLSELGLAEQVSTYGGRIEDLALERPRAFAALSARALSKLSVLMELASPLLISGGLLICYKANVQDEEWEHALSLQEKLGMRLYSDRTLMLSDGETSRRIITFEKSGRSKLKLPRHVGFAQKKPL
>NZ_LT900217.1|WP_087191150.1|1642167_1642701_+|KH-domain-containing-protein
MADEIVEEKQSAGETVEEPVDLTDEELDRIADTAIAALQDILKYFNVGEVTIDEYEGDEGELILDITGDDLAVLIGRHGKTLDALQFLVSAITVRTIGYRYPVVVDIEGYKGRQREKLESIARSSANRAASQNRSIKLRPMTPYERRIVHITLRDDDRVETASEGEGSARHVVILPR
>NZ_LT900217.1|WP_096227515.1|1641305_1642076_+|YidC/Oxa1-family-membrane-protein-insertase
MWDAFKDLIFQIIQFFYNFCGDWGLAIIIVTVIFRVLISPLMHKQTKSSFQMQKVQPLMKEIQTKYADDPQRQQEEMQKLYAEVKFNPLAGCLPMLLQMPIFMALFQVLSEMGARTEGSTYEFYNLVPSLVERPSEAFAQGFGTFVPYLILMVVFAGATFLPMVLQQMNNKDNAQRKQMVIMSAVMSVFMLWISWGSPAGVLLFWGASSLIGLGQQQISMRIMKKRDAEAAETIEVKPIEVDVTRKVKKPRPTKKR
>NZ_LT900217.1|WP_096228620.1|1641023_1641257_+|membrane-protein-insertion-efficiency-factor-YidD
MSDFIKHLPCKTAVFMITFYRAAISPLFPSCCRFTPTCSEYGIIAFRRYGFWKGLKLTVKRILRCRPGGPHGYDPVP
>NZ_LT900217.1|WP_096227514.1|1640674_1641004_+|ribonuclease-P-protein-component
METIKSNAEISSLFTHGKRLQTPYLTFIVVRNEKQHDPSGRAAFIAGKKLGNAVWRNGAKRRMRAICRELGGPWRGYDVIFLAKSNIVRASYSKVLAACDDTLKRAGVR
>NZ_LT900217.1|WP_096227521.1|1648559_1649201_-|hypothetical-protein
METTYTGFYARFDTPSKKDAAVLLGADNLVGDLFDVEFVTEEGTAVAWIVNRFGHRVAFLDADTTRRLRVLHARNWMIKALLSFVAFTDSPEPGEYWGEVAILCFSPEHEQAFTTFAGNVAQRLMEGIRPEVDLGEQGIKQILDSNGTWSPSKTVPLPTKKPGTVIMKGRRKMSEKLIEQGRKGNKGCYIVSWIFILAVVALALFGLKTCGVF
>NZ_LT900217.1|WP_096227522.1|1649344_1652440_+|DNA-polymerase-III-subunit-epsilon
MEKHSEQAHGILQTFISDGTPAAIEARYASLPAIAAESDYGDLDRNIVVLDTETTGFSFNHDELTQIAAARMEQGRIVDWFITFVNPGKPIPEDVAYLTDIHDEDVADAPLPSDALSDLVKFVGDAKIVAHNAEFDRTFTTRHPSGYPLLENTWIDSLDLARIALPRLKSHRLLDLVKAFGAPLSTHRADADVEATCSIFRILLAAVGAMPVPLVREIARMATPEQWPTQVVFDYFAGKRGDDDIICAGQTKELGKPESEAARQRFSLRALRRERVAKFDRKPKTDADAIAADPLRDLAFPSDEEITTAFAAEGLVGGLYRNFEPRAEQLAMAEAVRAAFAASENLMVEAGTGVGKSMAYLVPAALTARKNNIAVGIATKTNALLDQLVYHELPALGTALAEAGITGGNAPCDNADALGESPEGLTYAALKGFSHYPCLRKIDRLTVEGPGTRLVAGKEQSQAPALAALLSYIEQTEYDDMDGLKIDYRLLPRFAITTTSHDCLRRKCPYFGTSCFVHGARRRAESADIVVTNHSLLFCDLAADGGLLPPIRYWVVDEAHGAEAEARRAFSLALSAEDILRLTTRLSADEASRNVFLRAERRVIAPEKGEGAVLFYALTSKARAAGKVYGEAAREFTSHLKDLLFFDANKRGKAYDYVELWLNDDIRSSETFSYVASLGRVMADAAEKLVTPCQELVGYLEDVDGAADVQREIASLAMELKDQIRAVELILVQAPDGYAYAASLCRKNDKATDKLEALLLNVGEAMNETLYARTHSVVFASATLAVDEKFDAFEAALGLNTGELSHCRACKLDSSYDFDAHMTVYVASDMPEPNDPAYLERLQGLLVDVHRAQQGSMLTLFTNRREMERCFDVVQPAIKTDDLRLVCQKWGVSVKGLRDDFLADEHLSLFALKSFWEGFDAPGATLKGVVIPKLPFAKPTDPLSCERAARDDQAWRRYVLPQAVLETKQAAGRLIRKADDRGVLILADTRLVTKGYGKAFLNSLPSRTIKVCTCAEIVAELAAAADDESPA
>NZ_LT900217.1|WP_096227523.1|1652468_1653860_+|hypothetical-protein
MGKRNDKLGRAAHIKRHTVGTSNEISFSVLDAAKNELEGDVGKDAAARPSRFGHVSLFTLPLRRKKSIATPTKERGLLLSSGEFASAENPTPASSLGTVDVGSPKSDVAGPTTVPTGAPRKTAAAGSAAPAGSAAPALPAPSKVRSPEEEIALRKARRRLHRMLAATLVVVVGLCLAGAGGWYLYQDHQRHLHQVAQLDEALDLIREADETVVALDGIVANPLDAGSLAQADSVLAKLPAALAQLEEADAAARRVSVDLRESEGKEAANQTVAATGARTALIESGRQIVEQAQRADEAARAVREAWQRVVEADALARDAAALVADTTAEHVTASKDKTNAAVGAFADAQAALEALDSAYADVDLAGPLDYVAKRIEAMGHALASDDAFLAKNKEEAVAQNDAYNRADAEAATLAAGLPDDVAQLVFDAYDQATGTLFETYSTARSQAGAADAFLRDYLGTTSK
>NZ_LT900217.1|WP_096228622.1|1654010_1657256_+|aminopeptidase
MYITEQMQKEAGLSAVIEDFSGAGRADAPRAICCGATLVVAVLALFLSVMVIPALIVSLIALLLLVAEVLDRPVLSKTFARGVSQNVVAKYEPGYTSEAGGSRRRKIILVARYDSGKVRSELKQPFLSALPVLRWVNLGAMAAVPLLLVLRATLFLHAAGTTEIVLNVLMAIVLVLVALPVLEALAHKFAAYNEAANCNASGVSVLLDVARRVGRGRVSEAELAARAEGAAIHGEEAARAAGLVPEGVEIVYAASNVKPPELAPQSEAARLAAAKAAVAALTGKPVSGRLSTDLAENLVQVKEPPLPSPTDVDFQSQRGETREAFTTIPAETVQAALANAEAAALNGAEAAAAAAAGIPTSFPPAPAPAAEPVSSDGVPDWFKKAQEKAKKPVDNKQVHRSRYADALDAALGDNAEGPAEEPPTPPSDMEVRLQSMREGIMEVKAPQANRSDESPAGGQTETFANTVAVAMDGAAPETVPAQASATMPEVRFKSHDGADAPDTGATCAMPPIDVSELRLGDVPPMGDVPMPSFLDPAKAQAEKLEERGEVNRTANRVDVTAAPIGDSGRIELQSAQGAPSVQPAGAPVPVSPEGGEAAPASQRRPIVLPDIGVAAANLTPITELPKQRAPLAEAETSGKSAAKSLLTMLPSIEPVSDTAIPAVGDAPAVPAPQRPDLRAALPSLSGAIARPDEAAVSTAGAFVPAGATGAFAPVGDELLENVDPDDIYVDDADDSAYEGEYTETGAFAGTGYVEMPKSRAHRFLDKLRFRKRKEEEEPTPQEWLEVDETFDARTAGAARGGWESFREEQSAAPDYYEETYEDDAYVDDGEEDSYLAPLVGKSPEDTFAGVTSASPAAGFADDDFSLDDVDEYEDDAFRSDAGRRWNGGGFSRLRMGRANDVTPEELNPEDDLRAAHPDDPATPPELKEIYQFRNPDINTEVWFVALGSELAQHGGMHAFLAEHNQDLRGSIIIDIDALGAGELCMIEREGMYRKAKASSRMKRYTKKASQATGLSIGAASIMWEDSAASIAIKQGFQAMHLAGMDGAKPAFFAQGDDVLENIDEETLNNNAEFVMELLKNI
>NZ_LT900217.1|WP_166521699.1|1657400_1657553_+|hypothetical-protein
MAIEAYCVKCKAKKIMQDPVESTTKNGKPITKGKCPDCGTTICRIGAAKK
>NZ_LT900217.1|WP_096227524.1|1657841_1658507_+|HAD-family-hydrolase
MIDATTPRFNTFVFDLDGTLLDTLPDLVVLTNAVLRECGFPERTSAEILSYVGNGVKALMYQAVPQDADEEAVEAAMSRWKELYPQYGYRLTKAYAGIPETVAELKRRGARLGVLSNKFDAGVQDVVGAYLPGLFAVARGESADTPRKPDPTGLLRTIEELGSTPERTAYVGDSTGDIAVSRNAGTYAVAVTWGYHGAERLRAASADLVIDDPRALLDLLG
>NZ_LT900217.1|WP_096227525.1|1658545_1659031_+|VanZ-family-protein
MVRKSTAFVVASWVLVVLCAGFIFFMSSNTDTGLNDDLGLFSLVFQDLKALQAQLLGPGVDVVSSTAHFCEYAVFGALLANALRCHMPLRRACLVAVACASLYGVSDEFHQLFVPGRMCDPMDWLVDTAGAALGSGLAYLQLRRRRREGEERLGKEPLPKR
>NZ_LT900217.1|WP_087190763.1|1659049_1659292_-|helix-turn-helix-transcriptional-regulator
MLGRNVTRLRKQAKITKQKFALMVGVGRPFLNRIENGTADPRLSVILRLADALETTPQELLTNPGEPPTQSMPKRHARLG
>NZ_LT900217.1|WP_096227526.1|1659969_1661070_+|LCP-family-protein
MSRGKKVAIGILAAVLVAVVGCGTAFALYVNSINNELVGDMTSEEMQAIQDVLAPKKSFDEPFYMMLVGSDERTGSDEAGARSDTNIVVYVDPTRNQASIVSIPRDTMIDIDNVGISKFNAAYNYGGVSSTIREASQLLGVDISHYAEVNFENMVQLVDAVGGVDVEVTERIDDTDADNTTDNPYGQRIIIEEGLQHLNGEQALVFARSRAFVDGDFTRTANQRKLIMALVNKVLDMPVTDLPGVIQGAAKCVTTDLSVTDIISLAEQFKGKGDLTVYSAMAPTVFMDQMVDGQSFVLNDPTATKQMMETIEEGGDPSNIVGVSGLGPRGYTSGSGSSGYSSASSTGTGSSGYYDEESYDDYDPSY
>NZ_LT900217.1|WP_123649808.1|1661044_1661359_+|hypothetical-protein
MTITIRPTSRAATRLPRKAGRMANRVTVAIPLPLSTRDTLRGTNADIVQPNLLQRPFPHKRSGRFRVTERKHLRVNLVFCPGREHAIEFGNALEHVRSRESKEF

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	MN329673	Gordonia phage Jabberwocky, complete genome	56088-56121	6	0.824
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	MH651166	Gordonia phage Angelicage, complete genome	56014-56047	6	0.824
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	MH976506	Gordonia phage Affeca, complete genome	56046-56079	6	0.824
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	MN329673	Gordonia phage Jabberwocky, complete genome	56088-56121	6	0.824
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	MH651166	Gordonia phage Angelicage, complete genome	56014-56047	6	0.824
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	MH976506	Gordonia phage Affeca, complete genome	56046-56079	6	0.824
NZ_LT900217_4	4.4|413001|34|NZ_LT900217|CRISPRCasFinder,CRT	413001-413034	34	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	244837-244870	7	0.794
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	169800-169833	7	0.794
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	259671-259704	7	0.794
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	260693-260726	7	0.794
NZ_LT900217_4	4.19|413003|34|NZ_LT900217|PILER-CR	413003-413036	34	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	244837-244870	7	0.794
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	169800-169833	7	0.794
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	259671-259704	7	0.794
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_AP022566	Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence	260693-260726	7	0.794
NZ_LT900217_4	4.4|413001|34|NZ_LT900217|CRISPRCasFinder,CRT	413001-413034	34	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	714866-714899	8	0.765
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1192853-1192886	8	0.765
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	34285-34318	8	0.765
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	60940-60973	8	0.765
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	KR997932	Mycobacterium phage Godines, complete genome	59658-59691	8	0.765
NZ_LT900217_4	4.19|413003|34|NZ_LT900217|PILER-CR	413003-413036	34	LN997843	Streptomyces reticuli genome assembly TUE45, plasmid : II	714866-714899	8	0.765
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1192853-1192886	8	0.765
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_LR134461	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence	34285-34318	8	0.765
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NC_010510	Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence	60940-60973	8	0.765
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	KR997932	Mycobacterium phage Godines, complete genome	59658-59691	8	0.765
NZ_LT900217_2	2.7|398029|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder	398029-398062	34	LR743523	Xylella phage Usme genome assembly, chromosome: 1	24111-24144	9	0.735
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	519162-519195	9	0.735
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	407073-407106	9	0.735
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1320900-1320933	9	0.735
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	339803-339836	9	0.735
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	230497-230530	9	0.735
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	416152-416185	9	0.735
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	405858-405891	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	415695-415728	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	372241-372274	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013525	Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence	305787-305820	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013560	Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence	308380-308413	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	305970-306003	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	306340-306373	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	306340-306373	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	306332-306365	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	305970-306003	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	415013-415046	9	0.735
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NC_010998	Rhizobium etli CIAT 652 plasmid pA, complete sequence	311964-311997	9	0.735
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP050082	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence	519162-519195	9	0.735
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP025508	Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence	407073-407106	9	0.735
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1320900-1320933	9	0.735
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP030764	Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence	339803-339836	9	0.735
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP022667	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence	230497-230530	9	0.735
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP053208	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence	416152-416185	9	0.735
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP050087	Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence	405858-405891	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP021028	Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence	415695-415728	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP006989	Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence	372241-372274	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013525	Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence	305787-305820	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013560	Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence	308380-308413	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013577	Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence	305970-306003	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013549	Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence	306340-306373	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013534	Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence	306340-306373	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013545	Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence	306332-306365	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013503	Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013509	Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013520	Rhizobium sp. N113 plasmid pRspN113c, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013571	Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence	305970-306003	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013493	Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence	414522-414555	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP013516	Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence	415013-415046	9	0.735
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NC_010998	Rhizobium etli CIAT 652 plasmid pA, complete sequence	311964-311997	9	0.735
NZ_LT900217_3	3.5|407927|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder	407927-407960	34	MG099947	Mycobacterium phage Ph8s, complete genome	17645-17678	10	0.706
NZ_LT900217_3	3.5|407927|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder	407927-407960	34	NC_022058	Mycobacterium phage Adzzy, complete genome	17645-17678	10	0.706
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1320909-1320942	10	0.706
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1320916-1320949	10	0.706
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1246817-1246850	10	0.706
NZ_LT900217_4	4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT	412802-412835	34	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1192863-1192896	10	0.706
NZ_LT900217_4	4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT	413603-413636	34	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	115154-115187	10	0.706
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1320909-1320942	10	0.706
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1320916-1320949	10	0.706
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1246817-1246850	10	0.706
NZ_LT900217_4	4.16|412804|34|NZ_LT900217|PILER-CR	412804-412837	34	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1192863-1192896	10	0.706
NZ_LT900217_4	4.28|413605|34|NZ_LT900217|PILER-CR	413605-413638	34	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	115154-115187	10	0.706
NZ_LT900217_2	2.3|397765|37|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder	397765-397801	37	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	24433-24469	12	0.676
NZ_LT900217_2	2.3|397765|37|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder	397765-397801	37	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	93420-93456	12	0.676

1. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to MN329673 (Gordonia phage Jabberwocky, complete genome) position: , mismatch: 6, identity: 0.824

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gacctacgca-acgccgccggcaaggtcgtggtcg	Protospacer
 ***  **.* *****.***************.**

2. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to MH651166 (Gordonia phage Angelicage, complete genome) position: , mismatch: 6, identity: 0.824

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gacctacgca-acgccgccggcaaggtcgtggtcg	Protospacer
 ***  **.* *****.***************.**

3. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to MH976506 (Gordonia phage Affeca, complete genome) position: , mismatch: 6, identity: 0.824

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gacctacgca-acgccgccggcaaggtcgtggtcg	Protospacer
 ***  **.* *****.***************.**

4. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to MN329673 (Gordonia phage Jabberwocky, complete genome) position: , mismatch: 6, identity: 0.824

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gacctacgca-acgccgccggcaaggtcgtggtcg	Protospacer
 ***  **.* *****.***************.**

5. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to MH651166 (Gordonia phage Angelicage, complete genome) position: , mismatch: 6, identity: 0.824

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gacctacgca-acgccgccggcaaggtcgtggtcg	Protospacer
 ***  **.* *****.***************.**

6. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to MH976506 (Gordonia phage Affeca, complete genome) position: , mismatch: 6, identity: 0.824

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gacctacgca-acgccgccggcaaggtcgtggtcg	Protospacer
 ***  **.* *****.***************.**

7. spacer 4.4|413001|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

cgcagaggacccacgccggctcgccagccagcgc-	CRISPR spacer
cctggaggacccacgccggcgcaccag-cagcgtc	Protospacer
* ..**************** *.**** *****. 

8. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

accgtcg-tagacgccaccggcaaggtcgtggccg	CRISPR spacer
-cgttcgctcgacttcaccggcaaggtcgtggccc	Protospacer
 *  *** * *** .******************* 

9. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 7, identity: 0.794

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
caacgt-gtcgacgccaccggccaggtcgtgcaag	Protospacer
 * *** ** ************ ********   *

10. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 7, identity: 0.794

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
caacgt-gtcgacgccaccggccaggtcgtgcaag	Protospacer
 * *** ** ************ ********   *

11. spacer 4.19|413003|34|NZ_LT900217|PILER-CR matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

cgcagaggacccacgccggctcgccagccagcgc-	CRISPR spacer
cctggaggacccacgccggcgcaccag-cagcgtc	Protospacer
* ..**************** *.**** *****. 

12. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.794

accgtcg-tagacgccaccggcaaggtcgtggccg	CRISPR spacer
-cgttcgctcgacttcaccggcaaggtcgtggccc	Protospacer
 *  *** * *** .******************* 

13. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 7, identity: 0.794

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
caacgt-gtcgacgccaccggccaggtcgtgcaag	Protospacer
 * *** ** ************ ********   *

14. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_AP022566 (Mycolicibacterium alvei strain JCM 12272 plasmid pJCM12272, complete sequence) position: , mismatch: 7, identity: 0.794

-accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
caacgt-gtcgacgccaccggccaggtcgtgcaag	Protospacer
 * *** ** ************ ********   *

15. spacer 4.4|413001|34|NZ_LT900217|CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.765

cgcagaggacccacgccggctcgccagccagcgc	CRISPR spacer
cgcacaggacccacgccggctctccctccgccag	Protospacer
**** ***************** **  **. *. 

16. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.765

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gttgacacagtcgccaccggcaacgtcgtggccg	Protospacer
...* *..** ************ **********

17. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 8, identity: 0.765

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gccgtcgtcgacggcaccggcaaggtgctcgaca	Protospacer
.******* **** ************  * * *.

18. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 8, identity: 0.765

----accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cagaacc----ccgacgcccccgccaaggtcgtggccg	Protospacer
    ***    . ****** *** **************

19. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to KR997932 (Mycobacterium phage Godines, complete genome) position: , mismatch: 8, identity: 0.765

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgcgtgttcaacgccaccggccgggtcgtggccg	Protospacer
  ***  * .*********** .***********

20. spacer 4.19|413003|34|NZ_LT900217|PILER-CR matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 8, identity: 0.765

cgcagaggacccacgccggctcgccagccagcgc	CRISPR spacer
cgcacaggacccacgccggctctccctccgccag	Protospacer
**** ***************** **  **. *. 

21. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 8, identity: 0.765

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gttgacacagtcgccaccggcaacgtcgtggccg	Protospacer
...* *..** ************ **********

22. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_LR134461 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 19, complete sequence) position: , mismatch: 8, identity: 0.765

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
gccgtcgtcgacggcaccggcaaggtgctcgaca	Protospacer
.******* **** ************  * * *.

23. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NC_010510 (Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, complete sequence) position: , mismatch: 8, identity: 0.765

----accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cagaacc----ccgacgcccccgccaaggtcgtggccg	Protospacer
    ***    . ****** *** **************

24. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to KR997932 (Mycobacterium phage Godines, complete genome) position: , mismatch: 8, identity: 0.765

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgcgtgttcaacgccaccggccgggtcgtggccg	Protospacer
  ***  * .*********** .***********

25. spacer 2.7|398029|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder matches to LR743523 (Xylella phage Usme genome assembly, chromosome: 1) position: , mismatch: 9, identity: 0.735

ctttaatgcacgctcgatctggcgcagttcagcg	CRISPR spacer
ttcataggcgcgctggatctggcgcagttcaccc	Protospacer
.*.  * **.**** **************** * 

26. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

27. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

28. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aacgacgaaccgcttcccgaggcgac----cttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgccacwtc----	Protospacer
 *************.**** *****.    * **    

29. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

30. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

31. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

32. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

33. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

34. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

35. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013525 (Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

36. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013560 (Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

37. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

38. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

39. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

40. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

41. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

42. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

43. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

44. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

45. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

46. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

47. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NC_010998 (Rhizobium etli CIAT 652 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

48. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP050082 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b4, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

49. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

50. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aacgacgaaccgcttcccgaggcgac----cttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgccacwtc----	Protospacer
 *************.**** *****.    * **    

51. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

52. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

53. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP053208 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1B, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

54. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 9, identity: 0.735

---aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
ccaagcagca---cgctgccggaggcgaccttcagcg	Protospacer
   *.*..*.   **** ** ****************

55. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

56. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP006989 (Rhizobium sp. IE4771 plasmid pRetIE4771c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

57. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013525 (Rhizobium phaseoli strain R744 plasmid pRphaR744c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

58. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013560 (Rhizobium phaseoli strain N841 plasmid pRphaN841c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

59. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013577 (Rhizobium phaseoli strain N671 plasmid pRphaN671c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

60. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013549 (Rhizobium phaseoli strain R611 plasmid pRetR611b, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

61. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013534 (Rhizobium phaseoli strain R650 plasmid pRphaR650b, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

62. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013545 (Rhizobium phaseoli strain R620 plasmid pRphaR620c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

63. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013503 (Rhizobium esperanzae strain N561 plasmid pRspN561c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

64. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013509 (Rhizobium sp. N1341 plasmid pRspN1341d, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

65. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013520 (Rhizobium sp. N113 plasmid pRspN113c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

66. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013571 (Rhizobium phaseoli strain N771 plasmid pRphaN771c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

67. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013493 (Rhizobium sp. N6212 plasmid pRspN6212c, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

68. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

69. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NC_010998 (Rhizobium etli CIAT 652 plasmid pA, complete sequence) position: , mismatch: 9, identity: 0.735

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccccaaaaacgccaccggcaaggtcgccgccg	Protospacer
  * .*. *.******************. ****

70. spacer 3.5|407927|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder matches to MG099947 (Mycobacterium phage Ph8s, complete genome) position: , mismatch: 10, identity: 0.706

agcgaacgcacgagagggtcatcgccgagtaccc	CRISPR spacer
gcagccttcacgagagggtcatcgccggctacgc	Protospacer
.  *  . *******************. *** *

71. spacer 3.5|407927|34|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder matches to NC_022058 (Mycobacterium phage Adzzy, complete genome) position: , mismatch: 10, identity: 0.706

agcgaacgcacgagagggtcatcgccgagtaccc	CRISPR spacer
gcagccttcacgagagggtcatcgccggctacgc	Protospacer
.  *  . *******************. *** *

72. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

73. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

74. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

75. spacer 4.1|412802|34|NZ_LT900217|CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

76. spacer 4.13|413603|34|NZ_LT900217|CRISPRCasFinder,CRT matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 10, identity: 0.706

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccctaaaaacgccaccggcaaagtcgcggccg	Protospacer
  * ... *.*************.****.*****

77. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

78. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

79. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

80. spacer 4.16|412804|34|NZ_LT900217|PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.706

aacgacgaaccgcttcccgaggcgaccttcagcg	CRISPR spacer
cacgacgaaccgctccccgcggcgatgtcccctt	Protospacer
 *************.**** *****. *.*  . 

81. spacer 4.28|413605|34|NZ_LT900217|PILER-CR matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 10, identity: 0.706

accgtcgtagacgccaccggcaaggtcgtggccg	CRISPR spacer
cgccctaaaaacgccaccggcaaagtcgcggccg	Protospacer
  * ... *.*************.****.*****

82. spacer 2.3|397765|37|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 12, identity: 0.676

gagcctgaaccagggcgtcacgcagctcatcaccctg	CRISPR spacer
cgcgacgaaccagggcggcacgcggctcatcagctac	Protospacer
 .   .*********** *****.******** *.  

83. spacer 2.3|397765|37|NZ_LT900217|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 12, identity: 0.676

gagcctgaaccagggcgtcacgcagctcatcaccctg	CRISPR spacer
cgcgacgaaccagggcggcacgcggctcatcagctac	Protospacer
 .   .*********** *****.******** *.