CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT905062	Salmonella enterica subsp. enterica serovar Typhi isolate 403Ty-sc-1979084 chromosome 1	2 crisprs	cas3,WYL,DEDDh,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,c2c9_V-U4,DinG	1	6	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT905062_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT905062_1

1699443-1699863

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

6 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_LT905062_1

>merge|NZ_LT905062|1|1699443-1699863|CRISPRCasFinder,CRT,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACACGGACAGCAACCCGTGTCGGATATCAGACAGATCGGTTTATCCCCGCTGGCGCGGGGAACACACGCGAATCGCCAATCGCCGCCGCGTGAATTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCACGATGTATGCCGACCGTGATTTTTACCGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGATACGCCTTTACGTCGCCCTCTTTGGCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACATTAAAAAAGATTAATGTTGGTTATAGTTTTACGGTTTATCCCCGCTGGTGCGGGGAACACTAAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_LT905062|1|1|1699443-1699837|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>NZ_LT905062|1|1|1699443-1699837|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAC	GGACAGCAACCCGTGTCGGATATCAGACAGAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACGCGAATCGCCAATCGCCGCCGCGTGAATTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCACGATGTATGCCGACCGTGATTTTTACCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGATACGCCTTTACGTCGCCCTCTTTGGCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTAAAAAAGATTAATGTTGGTTATAGTTTTA
CGGTTTATCCCCGCTGGTGCGGGGAACAC	TAAAACACCGGTTGCGCAACCTCCGCGGGGAT
CGGTTTATCCCCGCTGGCGCGGGGATCGG

>NZ_LT905062|1|1|1699445-1699863|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACACG	GACAGCAACCCGTGTCGGATATCAGACAGATCG
GTTTATCCCCGCTGGCGCGGGGAACACA	CGCGAATCGCCAATCGCCGCCGCGTGAATTGCG
GTTTATCCCCGCTGGCGCGGGGAACACC	CACGATGTATGCCGACCGTGATTTTTACCGCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GATACGCCTTTACGTCGCCCTCTTTGGCGCGCG
GTTTATCCCCGCTGGCGCGGGGAACACA	TTAAAAAAGATTAATGTTGGTTATAGTTTTACG
GTTTATCCCCGCTGGTGCGGGGAACACT	AAAACACCGGTTGCGCAACCTCCGCGGGGATCGGTTTATCCCCGCTGGCGCGGGGATCG
GTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT905062.1\|WP_000490486.1\|1698381_1699428_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_LT905062.1\|WP_000372384.1\|1697222_1698131_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_LT905062.1\|WP_000062282.1\|1699947_1700241_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_LT905062.1\|WP_000366321.1\|1704299_1705835_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_LT905062.1\|WP_001291998.1\|1711124_1712837_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_LT905062.1\|WP_000134253.1\|1692052_1693102_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_LT905062.1\|WP_001092273.1\|1695773_1697213_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_LT905062.1\|WP_001221538.1\|1691310_1692072_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_LT905062.1\|WP_000666425.1\|1701864_1702590_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_LT905062.1\|WP_001145541.1\|1709273_1710227_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_LT905062.1\|WP_000118669.1\|1700243_1701161_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LT905062.1\|WP_000080392.1\|1710314_1711049_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_LT905062.1\|WP_000253542.1\|1690690_1691317_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	unknown	unknown	gnl\|CDD\|178974
NZ_LT905062.1\|WP_001681565.1\|1702599_1703658_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LT905062.1\|WP_000517480.1\|1694306_1694618_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_LT905062.1\|WP_050159202.1\|1693577_1694288_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_LT905062.1\|WP_001173663.1\|1695181_1695787_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_LT905062.1\|WP_000935107.1\|1703680_1704283_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_LT905062.1\|WP_001219244.1\|1693098_1693578_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_LT905062.1\|WP_000281411.1\|1701160_1701865_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795

Protein	Function_ID	Function_description	E-value
NZ_LT905062.1\|WP_000490486.1\|1698381_1699428_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_LT905062.1\|WP_000372384.1\|1697222_1698131_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_LT905062.1\|WP_000062282.1\|1699947_1700241_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	5.81067e-65
NZ_LT905062.1\|WP_000366321.1\|1704299_1705835_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_LT905062.1\|WP_001291998.1\|1711124_1712837_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_LT905062.1\|WP_000134253.1\|1692052_1693102_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_LT905062.1\|WP_001092273.1\|1695773_1697213_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_LT905062.1\|WP_001221538.1\|1691310_1692072_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_LT905062.1\|WP_000666425.1\|1701864_1702590_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	3.27863e-48
NZ_LT905062.1\|WP_001145541.1\|1709273_1710227_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_LT905062.1\|WP_000118669.1\|1700243_1701161_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.77553e-155
NZ_LT905062.1\|WP_000080392.1\|1710314_1711049_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.17372e-138
NZ_LT905062.1\|WP_000253542.1\|1690690_1691317_-\|protein-L-isoaspartate(D-aspartate)-O-methyltransferase	gnl\|CDD\|178974	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase.	4.34083e-128
NZ_LT905062.1\|WP_001681565.1\|1702599_1703658_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.49739e-119
NZ_LT905062.1\|WP_000517480.1\|1694306_1694618_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_LT905062.1\|WP_050159202.1\|1693577_1694288_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.36774e-118
NZ_LT905062.1\|WP_001173663.1\|1695181_1695787_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_LT905062.1\|WP_000935107.1\|1703680_1704283_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.74874e-39
NZ_LT905062.1\|WP_001219244.1\|1693098_1693578_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_LT905062.1\|WP_000281411.1\|1701160_1701865_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	2.23447e-89

>NZ_LT905062.1|WP_000490486.1|1698381_1699428_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLNNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_LT905062.1|WP_000372384.1|1697222_1698131_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_LT905062.1|WP_001092273.1|1695773_1697213_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIASEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNPDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEVCAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAICYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_LT905062.1|WP_001173663.1|1695181_1695787_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_LT905062.1|WP_000517480.1|1694306_1694618_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_LT905062.1|WP_050159202.1|1693577_1694288_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISGNSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_LT905062.1|WP_001219244.1|1693098_1693578_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_LT905062.1|WP_000134253.1|1692052_1693102_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADVLAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_LT905062.1|WP_001221538.1|1691310_1692072_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_LT905062.1|WP_000253542.1|1690690_1691317_-|protein-L-isoaspartate(D-aspartate)-O-methyltransferase
MVSGRVQALLEQLRAQGIRDELVLNALAAVPREKFIDEAFEHKAWENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCSVERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMAQLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA
>NZ_LT905062.1|WP_000062282.1|1699947_1700241_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_LT905062.1|WP_000118669.1|1700243_1701161_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWGGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFEIVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSHPIAIPLPVALGDSGHRST
>NZ_LT905062.1|WP_000281411.1|1701160_1701865_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHSLFLIETKLFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_LT905062.1|WP_000666425.1|1701864_1702590_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNRHYHLAVHALASQDRWLRDYHTVSAPRENKKYRYYTRRDELTLASDEVGTLISQREYRCDGYWHVAISATPDAPYSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_LT905062.1|WP_001681565.1|1702599_1703658_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFDRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_LT905062.1|WP_000935107.1|1703680_1704283_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYERKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKENISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERSRIRWANEYLSTSRGK
>NZ_LT905062.1|WP_000366321.1|1704299_1705835_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMRSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGLSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMNKAKVRCWYQHRIPLISVSHEEQFLAALNIVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_LT905062.1|WP_001145541.1|1709273_1710227_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGAKMTWHPELLQESISTLRKEVTGNAQIKAAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHTYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_LT905062.1|WP_000080392.1|1710314_1711049_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAETNAQLETLTAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWAQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_LT905062.1|WP_001291998.1|1711124_1712837_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKYPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGITFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYQENITEPDIQASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE

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Crispr_ID: NZ_LT905062_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT905062_2

2561121-2561224

Unclear

Consensus_repeat	Method
GTAGACCCTGATCCAGTAGACCCGGTTATCCCTGA	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_LT905062_2

>merge|NZ_LT905062|2|2561121-2561224|CRISPRCasFinder
ATTATTCCTGATCCGGTAGACCCTGTTATTCCTGACCCTGTCATTCCCGATCCGGTAGACCCTGATCCAGTAGACCCGGTTATCCCTGACCCTGTTATTCCCGA

>NZ_LT905062|2|2|2561121-2561224|CRISPRCasFinder
ATTATTCCTGATCCGGTAGACCCTGTTATTCCTGA	CCCTGTCATTCCCGATCCGGTAGACCCTGATCCA
GTAGACCCGGTTATCCCTGACCCTGTTATTCCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT905062.1\|WP_000984810.1\|2558737_2559355_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225360
NZ_LT905062.1\|WP_000703001.1\|2549006_2551325_-\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
NZ_LT905062.1\|WP_000766661.1\|2547194_2548904_+\|AsmA-family-protein	unknown	unknown	gnl\|CDD\|282957
NZ_LT905062.1\|WP_000749532.1\|2571397_2572339_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_LT905062.1\|WP_001186143.1\|2572574_2573318_-\|2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|188342
NZ_LT905062.1\|WP_000173551.1\|2554324_2554921_+\|TIGR02646-family-protein	unknown	unknown	gnl\|CDD\|131694
NZ_LT905062.1\|WP_000120781.1\|2553418_2553763_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT905062.1\|WP_000016758.1\|2542134_2544216_+\|ATP-dependent-DNA-helicase-RecG	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236794
NZ_LT905062.1\|WP_000834259.1\|2551336_2552719_-\|glycoside-pentoside-hexuronide-family-transporter	unknown	unknown	gnl\|CDD\|183145
NZ_LT905062.1\|WP_000535970.1\|2570452_2571355_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_LT905062.1\|WP_001224082.1\|2557870_2558008_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366690
NZ_LT905062.1\|WP_000115428.1\|2545682_2547074_+\|xanthine/proton-symporter-XanP	unknown	unknown	gnl\|CDD\|273276
NZ_LT905062.1\|WP_077905080.1\|2563777_2563891_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT905062.1\|WP_000131278.1\|2566305_2569032_-\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|237914
NZ_LT905062.1\|WP_000188469.1\|2573304_2574414_-\|D-glucosaminate-6-phosphate-ammonia-lyase	unknown	unknown	gnl\|CDD\|273623
NZ_LT905062.1\|WP_000389730.1\|2555991_2557020_+\|virulence-RhuM-family-protein	unknown	unknown	gnl\|CDD\|226452
NZ_LT905062.1\|WP_000106461.1\|2564509_2565190_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_LT905062.1\|WP_001082117.1\|2566191_2566284_-\|protein-MgtR	unknown	unknown	unknown
NZ_LT905062.1\|WP_001521985.1\|2562393_2562858_-\|hypothetical-protein	unknown	unknown	unknown
NZ_LT905062.1\|WP_000392697.1\|2569251_2569947_-\|MgtC-family-protein	unknown	unknown	gnl\|CDD\|185283

Protein	Function_ID	Function_description	E-value
NZ_LT905062.1\|WP_000984810.1\|2558737_2559355_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225360	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription].	0.00303367
NZ_LT905062.1\|WP_000703001.1\|2549006_2551325_-\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NZ_LT905062.1\|WP_000766661.1\|2547194_2548904_+\|AsmA-family-protein	gnl\|CDD\|282957	pfam05170, AsmA, AsmA family. The AsmA gene, whose product is involved in the assembly of outer membrane proteins in Escherichia coli. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant. AsmA may have a role in LPS biogenesis.	1.5513e-21
NZ_LT905062.1\|WP_000749532.1\|2571397_2572339_-\|Rpn-family-recombination-promoting-nuclease/putative-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.71469e-143
NZ_LT905062.1\|WP_001186143.1\|2572574_2573318_-\|2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|188342	TIGR03581, EF_0839, conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown. [Hypothetical proteins, Conserved].	1.22815e-128
NZ_LT905062.1\|WP_000173551.1\|2554324_2554921_+\|TIGR02646-family-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	6.10019e-19
NZ_LT905062.1\|WP_000115428.1\|2545682_2547074_+\|xanthine/proton-symporter-XanP	gnl\|CDD\|273276	TIGR00801, Uric_acid_permease, uracil-xanthine permease. The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40) Most of the functionally characterized members of the NCS2 family are transporters specific for nucleobases including both purines and pyrimidines. However, two closely related rat members of the family, SVCT1 and SVCT2, localized to different tissues of the body, cotransport L-ascorbate and Na+ with a high degree of specificity and high affinity for the vitamin. The NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39). [Transport and binding proteins, Nucleosides, purines and pyrimidines].	2.19228e-145
NZ_LT905062.1\|WP_000016758.1\|2542134_2544216_+\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_LT905062.1\|WP_000834259.1\|2551336_2552719_-\|glycoside-pentoside-hexuronide-family-transporter	gnl\|CDD\|183145	PRK11462, PRK11462, putative transporter; Provisional.	0
NZ_LT905062.1\|WP_001224082.1\|2557870_2558008_+\|hypothetical-protein	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.000244363
NZ_LT905062.1\|WP_000131278.1\|2566305_2569032_-\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|237914	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.	0
NZ_LT905062.1\|WP_000188469.1\|2573304_2574414_-\|D-glucosaminate-6-phosphate-ammonia-lyase	gnl\|CDD\|273623	TIGR01437, selA_rel, uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. [Unknown function, Enzymes of unknown specificity].	0
NZ_LT905062.1\|WP_000389730.1\|2555991_2557020_+\|virulence-RhuM-family-protein	gnl\|CDD\|226452	COG3943, COG3943, Virulence protein [General function prediction only].	1.16306e-179
NZ_LT905062.1\|WP_000106461.1\|2564509_2565190_+\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	3.05871e-58
NZ_LT905062.1\|WP_000535970.1\|2570452_2571355_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.62239e-50
NZ_LT905062.1\|WP_000392697.1\|2569251_2569947_-\|MgtC-family-protein	gnl\|CDD\|185283	PRK15385, PRK15385, MgtC family protein.	2.31193e-154

>NZ_LT905062.1|WP_000984810.1|2558737_2559355_+|helix-turn-helix-transcriptional-regulator
MMRKPSQIVHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNAFLKKGFIEKLLLDRHNHLSSGFIFVDFSFPNLRRFTDLQWADSLANSGMHIVLISDRSLTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGRLANSKRGRTLNYTEFILLKHFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIHKIISNIL
>NZ_LT905062.1|WP_001224082.1|2557870_2558008_+|hypothetical-protein
MRKARLTEHQNIAVIKLVEAGRAVKDICQEADISEVTDDIYGHWV
>NZ_LT905062.1|WP_000389730.1|2555991_2557020_+|virulence-RhuM-family-protein
MEDKYLTQSPAGEFIMFASGDGKVRVECRFESNTLWLSQGMICELYGKAKATISEHIKNIFADGELEENSVVRFYRTTASDGKNYQIQYFSLPLILAVGYRVRSPRGTQFRQWATQTLQEYLIKGFVMDDERLKNPPVGSSAVPDYFDEMLERIRDIRASERRVYLRVREIFALAADYQPSLKETTQFFQTIQNKLHFACTGYTAAELIHQRADACQPHMGLTSYKGEEVRKCDVTVAKNYLTQDEVSELNRVVNMWLDFAEDQARRRQQVFLRDWQDKLDQFLQFNDREVLQGAGKVSKKMADEKAQAEYSQFAEQQRRLKEAEGEKDIAALLQWKTEPKK
>NZ_LT905062.1|WP_000173551.1|2554324_2554921_+|TIGR02646-family-protein
MTLLLNEQYHLCCYSEIRADLRGLGYHIEHVENKSQQPGRTFDYQNLAASALDSENGLPQLGINTFGGHVQGKNKSVDMAQFIHCHLPDCSRYFAYLSNGHVVPSIDLTEQEAEYAQYTIDHLNLNSGFLQTERRNHWEELEQLFEEHIEKDWDLHQLLQLDLVPSPDHKLHEFFSITRQFFQQEAEQVLQSHAPALI
>NZ_LT905062.1|WP_000120781.1|2553418_2553763_-|hypothetical-protein
MSYKYVGKHGCDVALRMGYKEYPDENAYGDAYYIKDGLKWIFNITGLKKRLGVYSDDDLRKQNYDVDTYYRVENQQEESADDEMQSLYHNLAVEEGEPVYLEGGMYLYPDGSIR
>NZ_LT905062.1|WP_000834259.1|2551336_2552719_-|glycoside-pentoside-hexuronide-family-transporter
MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMREDLRDIWHNDQWRIVGLLTILNILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGNLIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDAAAKTQNSATISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNEQEFTHKELQN
>NZ_LT905062.1|WP_000703001.1|2549006_2551325_-|alpha-xylosidase
MKISDGNWLIQPGLNLIHPVQVFDVEQHGNEMVVYAAPRDVRERTWQLDTPLFTLRFFSPQEGVIGVRMEHFQGALDNGPHYPLNVLQDINVEMQNNAEFAELKSGSLSVRVTKGELWSLDFLRNGVRITGSQLKNNGYVQDTNSGRNYMFERLDLGVGETVYGLGERFTALVRNGQTVETWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSFEIGSEKVSKVQFSVESEYLEYFVIDGPTPKDVLNRYTQFTGRPALPPAWSFGLWLTTSFTTNYDEATVNRFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIHRLKAKGLKVCVWINPYIGQKSPVFQELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPQACEWYADKLKGLVEMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWNVLKETVGVEEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTEQKCRMMPYLYREAARANEAGTPMMRAMMLEFPDDPACDYLDRQYMLGDAVMVAPVFSEAGDVEFYLPEGRWTHLWRNDEVQGSRWHKQQHDFLSLPVYVRDNTLLALGNNSQKPDYAWHEGTAFQLFHLDDGCEAVCEVPATDGSTIFTLQAKRTGNTITVSGEGEARNWTLCLRNITQISGTKCGSYAGSELGVVVTPQGNEVVITL
>NZ_LT905062.1|WP_000766661.1|2547194_2548904_+|AsmA-family-protein
MKLIGRLLLYVLIACLVVIFGFYFLLQTRWGADHVSNWVSENSGYHLTFDVMDHRFSAPSHLLLENVTFGRDGQPATLVAKTVDIGLSIRQLTAPLHVDTILLQDGTLNISVQTAPFPFEADRLQLRNMALNSPGSEWRLSAQRVNGGVMPWRPEAGRVLGNKAQIQLSAGSLTLNDVPATNVLIEGSIDHDQMMLNTVGADMARGALTGVARRNADGSWVVENLRLNDIRLQSDKSLSEFFAPLTTVPSLQIGRLEVTDSSLQGPDWAVTDLDLSLRNLTLRKEDWQSQEGKLSMNASEFIYGSLHLLDPILNAEFSPQGVALRQFTTRWEGGMVRTSGAWLRESKALILDDTAIAGLEYTLPENWKQLWMKPLPDWLNSLTLKKFSASRNLVIDIDPTFPWQITALDGYGANLELVQHHQWGVWSGNATLNAAAATFNRVDVRRPSLSLTANASTVNISDLSAFTEKGILEATASVSQQPQRQTQISLNGRGVPMDVLQQWGWPALPIAGDGNIQFTASGNIQADAPLKPTVNGQLHAVNAQKQQIMQTMQAGVVSGGEVTSTEPAL
>NZ_LT905062.1|WP_000115428.1|2545682_2547074_+|xanthine/proton-symporter-XanP
MSVNAIEPADAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLLAMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQGTSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRILHLARRIITPLVSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNPYLRVASLVIAMAAGYLLAWFMGMLPENNAPVSQDILMVPTPLYYGLGIDWNLLLPLMLVFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCFGQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIAASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPQILQFAPEWVKNLLSSGIAAGGITAIVLNLILPPEKP
>NZ_LT905062.1|WP_000016758.1|2542134_2544216_+|ATP-dependent-DNA-helicase-RecG
MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRYEDRTHLYPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFNAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRTLHRPPPTLQLADLETGKHPAQRRLILEELLAHNLSMLALRAGAQRYHTQPLSTNNILKDKLLASLPFKPTSAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATWEELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQKDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHIHERYPQQAQALIERWMPETERYSNA
>NZ_LT905062.1|WP_001521985.1|2562393_2562858_-|hypothetical-protein
MLACLTLLFLGVGLGHLFHLYTEKNRDPEKCTAPVIVFYNNTQANLTLDFMYSLKKRTGVVSISGTYYVDNKMSGVIRRDVSYVWSENKDSTHFISTDINKVTRDETLSDAVIETVLPDFYVYPGKSISYTILTQGHRGFMFTIGKRPIFFCTH
>NZ_LT905062.1|WP_077905080.1|2563777_2563891_-|hypothetical-protein
MIFSPQYKTGGLTNKKTKRTFTPESAIMRKAVSTLTC
>NZ_LT905062.1|WP_000106461.1|2564509_2565190_+|isochorismatase-family-protein
MSTPANFNGQRPAIDANDAVMLLIDHQSGLFQTVGDMPMPELRARAAALAKIATLCNMPVITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNADFVQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITMARVVQAGVVPMDTAAVASELQRTWNREDAAEWADVYTKIFPAYQLLIESYTKAQEVVKNNELLDSQRA
>NZ_LT905062.1|WP_001082117.1|2566191_2566284_-|protein-MgtR
MNRSPDKIIALIFLLISLLVLCLALWQIVF
>NZ_LT905062.1|WP_000131278.1|2566305_2569032_-|magnesium-translocating-P-type-ATPase
MTDMNIENRKLNRPASENDKQHKKVFPIEAEAFHSPEETLARLNSHRQGLTIEEAGERLKVYGRNEVAHEQVPPVLVQLLQAFNNPFIYVLMALAGVSFITDYWLPLRRGEETDLTGVLIILTMVSLSGLLRFWQEFRTNRAAQALKKMVRTTATMLRRGPGNIGAVQEEIPIEELVPGDVVFLAAGDLVPADVRLLASRDLFISQLILSGESLPVEKYDVMADVAGKDSEQLPDKDKSLLDLGNICLMGTNVTSGRAQAVVVATGSRTWFGSLAKSIVGTRTQTAFDRGVNSVSWLLIRFMLIMVPVVLLINGFSKGDWVEASLFALAVAVGLTPEMLPMIVSSNLAKGAIAMSRRKVIVKRLNAIQNFGAMDVLCTDKTGTLTQDNIFLEHHLDVSGVKSSRVLMLAWLNSSSQSGARNVMDRAILRFGEGRIAPSTKARFIKRDELPFDFVRRRVSVLVEDAQHGDRCLICKGAVEEMMMVATHLREGDRVVALTETRRELLLAKTEDYNAQGFRVLLIATRKLDGSGNNPTLSVEDETELTIEGMLTFLDPPKESAGKAIAALRDNGVAVKVLTGDNPVVTARICLEVGIDTHDILIGTQVEAMSDAELASEVEKRAVFARLTPLQKTRILQALQKNGHTVGFLGDGINDAPALRDADVGISVDSAADIAKESSDIILLEKDLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLLIQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTFALMWYVFAANNVEAQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSRATLPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLPLSYFPWLVATLLSYCLVAQGMKRFYIKRFGQWF
>NZ_LT905062.1|WP_000392697.1|2569251_2569947_-|MgtC-family-protein
MEERMLMFPYILNLLAAMLLGALIGAERQWRQRMAGLRTNALVATGAAVFILSSMTTSPDSPGRIAAQIVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAGIGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPVSAEAEKRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDNDNITAIHWSIDSQ
>NZ_LT905062.1|WP_000535970.1|2570452_2571355_+|EamA-family-transporter
MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSRMSSQFLTMIRLLFAGLILVTFSFMHGDKIFSILKNRKDALSLLIFSVVGALTVQLTFLLTIEKSNAATATVLQFLSPTIIVAWFALARRTRPGILVLTAILTSLIGTFLLVTHGNPTSLSISSGALFWGIASAFAAAFYTTWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLILAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGISFTLPDWLGTLLILSSVILISLDSRRRARAA
>NZ_LT905062.1|WP_000749532.1|2571397_2572339_-|Rpn-family-recombination-promoting-nuclease/putative-transposase
MKKSPTSTPHDAVFKTFLRHPDTARDFLNIHLPHLLRIRCDLTTLKLAPDSFIEKNLRAFYSDVLWSLKTCEGDGYIYVVIEHQSTPDAHMAFRLMCYATAAMQRHLDAGHKTLPLVIPMLFYHGAKSPYPFSLCWLDEFGDPALARQLYATAFPLVDITVVPDNEIMQHRRIAMLELVQKHIRQRDLMGLVERLAVLLITGNANDSQLKALFNYLLIQHGSTPRFGKFIREVARCVPQHKERLMTIVDRIRESGRRKGKREGVQQGIQQGIHQGKQEEALRIAHTMLEQGIEREMVLMITGLSDEEIKAKRH
>NZ_LT905062.1|WP_001186143.1|2572574_2573318_-|2-dehydro-3-deoxy-phosphogluconate-aldolase
MQQINFYRQRVAINVLAKDIANAKAIYEAAEGHAVIGVLSAQFATVEEGVPEVKRWMAEVPSISVGLGAGDPAQYYKAAMIAAHTHPAHVNQTFTGSGFAAGALAATGGEQTHINALVSPTGTPGEVVISTGVSSSQGMPARVSCEAAVRMMQDMGAHAAKFFPMGGEKSLPELYALATTAARHGMTLIEPTGGISLDNFGIILQTCLEAGVPRVMPHVYSSIIDPQTGNTRPEDIIQLMEIVKALV
>NZ_LT905062.1|WP_000188469.1|2573304_2574414_-|D-glucosaminate-6-phosphate-ammonia-lyase
MTPNIYQQLGLKKVINACGKMTILGVSSVAPEVMQATARAASAFVEIDALVEKTGELVSRYTGAEDSYITSCASAGIAIAVAAAITHGDRARVALMPDSTGMANEVVMLRGHNVDYGAPVTSAIRLGGGRIVEVGSSNLAARWQLESAINEKTAALLYVKSHHCVQKGMLSIDDFVQVAQANHLPLIVDAAAEEDLRGWVVSGADMVIYSGAKAFNAPTSGFITGKKTWIAACKAQHQGIARAMKIGKENMVGLVYALENYHQGQTTVTAAQLQPVAEAISAIHGLYADIEQDEAGRAIWRIRVRVNASELGLNAQDVEAQLRGGEIAIYARKYQLHQGVFSLDPRTVAEGEMALIVARLREIAEHAAD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_LT905062.1	2561210-2561243	2	0.941

1. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to position: 2561210-2561243, mismatch: 2, identity: 0.941

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
ccctgttattcccgatccggtggaccctgatcca	Protospacer
******.**************.************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453979-454010	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251927	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6517-6548	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238903	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235351-235382	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378779-378810	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82570	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224310	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221158	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284077	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219176	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55526	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376247	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134902	5	0.844
NZ_LT905062_1	1.3\|1699594\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699594-1699625	32	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88841-88872	5	0.844
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_KY494864	Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence	453978-454010	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_KU130294	Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence	251896-251928	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP009975	Pseudomonas putida S12 plasmid pTTS12, complete sequence	6516-6548	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP039989	Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence	238872-238904	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_MN433457	Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence	235350-235382	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP029096	Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence	378778-378810	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP045003	Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence	82539-82571	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP045917	Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence	224279-224311	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	MF344571	Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence	221127-221159	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	MF344569	Pseudomonas aeruginosa plasmid p12939-PER, complete sequence	284046-284078	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	MF344570	Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence	219145-219177	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP039294	Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence	55495-55527	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	CP027478	Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence	376216-376248	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP015879	Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence	134871-134903	6	0.818
NZ_LT905062_1	1.9\|1699595\|33\|NZ_LT905062\|PILER-CR	1699595-1699627	33	NZ_CP016215	Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence	88840-88872	6	0.818
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59640	7	0.781
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694480	Marine virus AFVG_250M133, complete genome	20886-20917	7	0.781
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694671	Marine virus AFVG_250M145, complete genome	23163-23194	7	0.781
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694753	Marine virus AFVG_250M144, complete genome	25459-25490	7	0.781
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694231	Marine virus AFVG_250M143, complete genome	21163-21194	7	0.781
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN693981	Marine virus AFVG_250M146, complete genome	18773-18804	7	0.781
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559039-559070	8	0.75
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214654-214685	8	0.75
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578776-578807	8	0.75
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592123	8	0.75
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694115	Marine virus AFVG_250M901, complete genome	49467-49498	8	0.75
NZ_LT905062_1	1.11\|1699717\|33\|NZ_LT905062\|PILER-CR	1699717-1699749	33	NZ_CP046723	Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence	559038-559070	8	0.758
NZ_LT905062_1	1.11\|1699717\|33\|NZ_LT905062\|PILER-CR	1699717-1699749	33	NZ_CP034470	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence	214653-214685	8	0.758
NZ_LT905062_1	1.11\|1699717\|33\|NZ_LT905062\|PILER-CR	1699717-1699749	33	NZ_CP034149	Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence	578775-578807	8	0.758
NZ_LT905062_1	1.11\|1699717\|33\|NZ_LT905062\|PILER-CR	1699717-1699749	33	NZ_CP034475	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence	592092-592124	8	0.758
NZ_LT905062_1	1.11\|1699717\|33\|NZ_LT905062\|PILER-CR	1699717-1699749	33	KJ019071	Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome	59609-59641	8	0.758
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_KR091915	Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence	34745-34778	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_LN824136	Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_C_Kpneumoniae_MS6671	8497-8530	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP054370	Escherichia coli strain SCU-115 plasmid pSCU-115-2, complete sequence	11080-11113	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP015505	Klebsiella pneumoniae strain SKGH01 plasmid unnamed 5, complete sequence	19664-19697	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP026060	Proteus mirabilis strain FDAARGOS_80 plasmid unnamed1, complete sequence	8699-8732	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP028999	Klebsiella pneumoniae strain AR_0079 plasmid unnamed2, complete sequence	6552-6585	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP027258	Escherichia coli strain EC11 plasmid unnamed3, complete sequence	13540-13573	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP023823	Escherichia coli strain 7/2 plasmid p7_2.3, complete sequence	8497-8530	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP026025	Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence	24864-24897	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP025915	Escherichia coli strain 203740 plasmid p203740_35, complete sequence	16768-16801	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_LS999564	Escherichia coli isolate EC-TO143 plasmid 5, complete sequence	8856-8889	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP006640	Escherichia coli PCN061 plasmid PCN061p4, complete sequence	14131-14164	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP029801	Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 plasmid pR16.0676_34k, complete sequence	16058-16091	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP024853	Escherichia coli strain AR_0006 plasmid tig00000176, complete sequence	8500-8533	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_LT985287	Escherichia coli strain RPC3 plasmid RCS69_pI, complete sequence	39427-39460	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP015914	Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy2, complete sequence	117964-117997	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NC_020122	Citrobacter freundii strain CFSTE plasmid pN-Cit, complete sequence	10428-10461	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_CP018988	Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_3, complete sequence	8856-8889	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_MK033500	Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj58k plasmid pConj58k, complete sequence	15665-15698	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_MK033501	Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj83k plasmid pConj83k, complete sequence	63964-63997	8	0.765
NZ_LT905062_2	2.1\|2561156\|34\|NZ_LT905062\|CRISPRCasFinder	2561156-2561189	34	NZ_MK033499	Escherichia coli strain C600_pConj125k plasmid pConj125k, complete sequence	116072-116105	8	0.765
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	NZ_CP046630	Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence	66427-66458	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	NZ_CP046920	Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence	70206-70237	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694046	Marine virus AFVG_250M906, complete genome	22321-22352	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN693836	Marine virus AFVG_250M487, complete genome	10882-10913	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN693891	Marine virus AFVG_250M480, complete genome	21841-21872	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MK268344	Salmonella phage Munch, complete genome	122526-122557	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694071	Marine virus AFVG_250M483, complete genome	16976-17007	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694294	Marine virus AFVG_250M486, complete genome	8469-8500	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN693751	Marine virus AFVG_250M485, complete genome	13096-13127	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694002	Marine virus AFVG_250M481, complete genome	18787-18818	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694650	Marine virus AFVG_250M482, complete genome	20198-20229	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN693906	Marine virus AFVG_250M905, complete genome	17506-17537	9	0.719
NZ_LT905062_1	1.5\|1699716\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699716-1699747	32	MN694711	Marine virus AFVG_250M484, complete genome	24974-25005	9	0.719
NZ_LT905062_1	1.6\|1699777\|32\|NZ_LT905062\|CRISPRCasFinder,CRT	1699777-1699808	32	KR052482	Sinorhizobium phage phiN3, complete genome	197290-197321	9	0.719

1. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

2. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

3. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

4. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

5. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

6. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

7. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

8. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

9. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

10. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

11. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

12. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

13. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

14. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

15. spacer 1.3|1699594|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 5, identity: 0.844

ccacgatgtatgccgaccgtgatttttaccgc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagc	Protospacer
*********** **** **********   **

16. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_KY494864 (Pseudomonas aeruginosa strain FFUP_PS_37 plasmid pJB37, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

17. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_KU130294 (Pseudomonas putida strain 12969 plasmid p12969-DIM, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

18. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP009975 (Pseudomonas putida S12 plasmid pTTS12, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

19. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP039989 (Pseudomonas aeruginosa strain T2436 plasmid pBT2436, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

20. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_MN433457 (Pseudomonas aeruginosa strain PAB546 plasmid pNK546-KPC, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

21. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP029096 (Pseudomonas aeruginosa strain AR439 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

22. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP045003 (Pseudomonas aeruginosa strain PAG5 plasmid pPAG5, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

23. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP045917 (Pseudomonas aeruginosa strain CF39S plasmid pCF39S, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

24. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to MF344571 (Pseudomonas aeruginosa plasmid pR31014-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

25. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to MF344569 (Pseudomonas aeruginosa plasmid p12939-PER, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

26. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to MF344570 (Pseudomonas aeruginosa plasmid pA681-IMP, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

27. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP039294 (Pseudomonas aeruginosa strain PABL048 plasmid pPABL048, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

28. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to CP027478 (Pseudomonas koreensis strain P19E3 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

29. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP015879 (Pseudomonas citronellolis strain SJTE-3 plasmid pRBL16, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

30. spacer 1.9|1699595|33|NZ_LT905062|PILER-CR matches to NZ_CP016215 (Pseudomonas aeruginosa strain PA121617 plasmid pBM413, complete sequence) position: , mismatch: 6, identity: 0.818

ccacgatgtatgccgaccgtgatttttaccgcc	CRISPR spacer
ccacgatgtatcccgagcgtgatttttcgagcg	Protospacer
*********** **** **********   **

31. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aattacaatggttaatgttggttatagtttag	Protospacer
* * * ** *.******************* .

32. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694480 (Marine virus AFVG_250M133, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

33. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694671 (Marine virus AFVG_250M145, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

34. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694753 (Marine virus AFVG_250M144, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

35. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694231 (Marine virus AFVG_250M143, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

36. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN693981 (Marine virus AFVG_250M146, complete genome) position: , mismatch: 7, identity: 0.781

attaaaaaa----gattaatgttggttatagtttta	CRISPR spacer
----gaaaatttcgattaatgttagttgtagtttta	Protospacer
    .****    **********.***.********

37. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

38. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

39. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

40. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggtta--tagtttta	CRISPR spacer
attaagaaagattaatgttgtttaatcaacgt--	Protospacer
*****.************** ***  .*.. *

41. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694115 (Marine virus AFVG_250M901, complete genome) position: , mismatch: 8, identity: 0.75

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
attaaaaaatattaatcttggttcttccgtaa	Protospacer
********* ****** ****** *  . * *

42. spacer 1.11|1699717|33|NZ_LT905062|PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

43. spacer 1.11|1699717|33|NZ_LT905062|PILER-CR matches to NZ_CP034470 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

44. spacer 1.11|1699717|33|NZ_LT905062|PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

45. spacer 1.11|1699717|33|NZ_LT905062|PILER-CR matches to NZ_CP034475 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_1, complete sequence) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac---	CRISPR spacer
attaagaaagattaatgttgttta---atcaacgta	Protospacer
*****.************** ***    *. **

46. spacer 1.11|1699717|33|NZ_LT905062|PILER-CR matches to KJ019071 (Synechococcus phage ACG-2014g isolate Syn7803US105, complete genome) position: , mismatch: 8, identity: 0.758

attaaaaaagattaatgttggttatagttttac	CRISPR spacer
aattacaatggttaatgttggttatagtttagg	Protospacer
* * * ** *.******************* .

47. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_KR091915 (Klebsiella pneumoniae strain KPC-DK05 plasmid pKPC-DK05, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

48. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_LN824136 (Klebsiella pneumoniae genome assembly MS6671.v1, plasmid : _Plasmid_C_Kpneumoniae_MS6671) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

49. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP054370 (Escherichia coli strain SCU-115 plasmid pSCU-115-2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

50. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP015505 (Klebsiella pneumoniae strain SKGH01 plasmid unnamed 5, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

51. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP026060 (Proteus mirabilis strain FDAARGOS_80 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

52. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP028999 (Klebsiella pneumoniae strain AR_0079 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

53. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP027258 (Escherichia coli strain EC11 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

54. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP023823 (Escherichia coli strain 7/2 plasmid p7_2.3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

55. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP026025 (Klebsiella pneumoniae strain 11420 plasmid p11420-KPC, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

56. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP025915 (Escherichia coli strain 203740 plasmid p203740_35, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

57. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_LS999564 (Escherichia coli isolate EC-TO143 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

58. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP006640 (Escherichia coli PCN061 plasmid PCN061p4, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

59. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP029801 (Salmonella enterica subsp. enterica serovar Anatum strain R16.0676 plasmid pR16.0676_34k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

60. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP024853 (Escherichia coli strain AR_0006 plasmid tig00000176, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

61. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_LT985287 (Escherichia coli strain RPC3 plasmid RCS69_pI, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

62. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP015914 (Escherichia coli strain 210205630 isolate 210205630 plasmid pSLy2, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

63. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NC_020122 (Citrobacter freundii strain CFSTE plasmid pN-Cit, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

64. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_CP018988 (Escherichia coli strain Ecol_AZ146 plasmid pECAZ146_3, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

65. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_MK033500 (Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj58k plasmid pConj58k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

66. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_MK033501 (Salmonella enterica subsp. enterica serovar Anatum strain R13.0957_pConj83k plasmid pConj83k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

67. spacer 2.1|2561156|34|NZ_LT905062|CRISPRCasFinder matches to NZ_MK033499 (Escherichia coli strain C600_pConj125k plasmid pConj125k, complete sequence) position: , mismatch: 8, identity: 0.765

ccctgtcattcccgatccggtagaccctgatcca	CRISPR spacer
cgttgatttacccgaaccggtagaccctgataca	Protospacer
* .** . * ***** *************** **

68. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP046630 (Streptococcus equinus strain CNU G6 plasmid p1_CNU_G6, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

69. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to NZ_CP046920 (Streptococcus sp. CNU G2 plasmid p_CNU_G2, complete sequence) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
aagaaaaatgattaatgttgtttataataact	Protospacer
*  ***** *********** *****.*  .

70. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694046 (Marine virus AFVG_250M906, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

71. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN693836 (Marine virus AFVG_250M487, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

72. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN693891 (Marine virus AFVG_250M480, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

73. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MK268344 (Salmonella phage Munch, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaagattaatgttggttatagtttta	CRISPR spacer
ggcagcattgattaatgatggttttagtttta	Protospacer
. .*. *  ******** ***** ********

74. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694071 (Marine virus AFVG_250M483, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

75. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694294 (Marine virus AFVG_250M486, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

76. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN693751 (Marine virus AFVG_250M485, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

77. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694002 (Marine virus AFVG_250M481, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

78. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694650 (Marine virus AFVG_250M482, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

79. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN693906 (Marine virus AFVG_250M905, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

80. spacer 1.5|1699716|32|NZ_LT905062|CRISPRCasFinder,CRT matches to MN694711 (Marine virus AFVG_250M484, complete genome) position: , mismatch: 9, identity: 0.719

attaaaaaa-----gattaatgttggttatagtttta	CRISPR spacer
-----gaagttttcgattaatgttagttgtagtttta	Protospacer
     .**.     **********.***.********

81. spacer 1.6|1699777|32|NZ_LT905062|CRISPRCasFinder,CRT matches to KR052482 (Sinorhizobium phage phiN3, complete genome) position: , mismatch: 9, identity: 0.719

taaaacaccggttgcgcaacctccgcggggat	CRISPR spacer
aacaacaccggttgcgaaacctacgcaaaaaa	Protospacer
 * ************* ***** ***....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

176965 : 249871

Burkholderia_virus(45.71%)

tRNA,capsid,plate,tail,protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000168626.1\|176965_178240_+\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	1.6e-85	42.1
WP_000765713.1\|178988_179594_-	glutathione transferase GstA	NA	NA	NA	NA
WP_000100913.1\|179698_181204_-	dipeptide/tripeptide permease DtpA	NA	NA	NA	NA
WP_001030324.1\|181804_182440_-	endonuclease III	NA	NA	NA	NA
WP_001289628.1\|182439_183132_-	electron transport complex subunit E	NA	NA	NA	NA
WP_000920820.1\|183134_183755_-	electron transport complex subunit RsxG	NA	NA	NA	NA
WP_000231887.1\|183758_184817_-	electron transport complex subunit RsxD	NA	NA	NA	NA
WP_000915581.1\|184817_186839_-	electron transport complex subunit RsxC	NA	NA	NA	NA
WP_001092600.1\|186831_187410_-	electron transport complex subunit RsxB	NA	NA	NA	NA
WP_000133179.1\|187409_187991_-	electron transport complex subunit RsxA	NA	NA	NA	NA
WP_000214061.1\|188067_188508_-	DUF2569 domain-containing protein	NA	NA	NA	NA
WP_000217946.1\|188596_188812_-	transcription modulator YdgT	NA	NA	NA	NA
WP_031608772.1\|189110_189236_-	division septum protein Blr	NA	NA	NA	NA
WP_000998242.1\|189443_190484_+	oxidoreductase	NA	NA	NA	NA
WP_000565566.1\|190557_191559_-	adenosine deaminase	NA	NA	NA	NA
WP_000753325.1\|192264_193773_-	YdgA family protein	NA	NA	NA	NA
WP_001170615.1\|193875_195051_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_000066606.1\|195250_196897_+	class I fumarate hydratase	NA	NA	NA	NA
WP_000259129.1\|197064_198468_+	class II fumarate hydratase	NA	NA	NA	NA
WP_000092483.1\|198464_199394_-	DNA replication terminus site-binding protein	NA	NA	NA	NA
WP_000928668.1\|200880_202587_-	amidohydrolase	NA	NA	NA	NA
WP_000824321.1\|202739_203891_-	porin OmpS2	Q1MVN1	Enterobacteria_phage	3.2e-117	59.1
WP_001080045.1\|204371_205103_-	two-component system response regulator RstA	NA	NA	NA	NA
WP_000524877.1\|205229_205565_+	GlpM family protein	NA	NA	NA	NA
WP_000412353.1\|205626_207009_-	amino acid permease	NA	NA	NA	NA
WP_001165548.1\|207289_207862_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	8.8e-84	84.7
WP_155522220.1\|210271_210838_-\|tail	phage tail protein	F1BUP1	Erwinia_phage	8.0e-37	70.8
WP_000852584.1\|210840_211419_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	6.4e-66	65.8
WP_001219103.1\|211411_212515_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.4e-106	54.3
WP_000859114.1\|212505_212853_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	8.6e-34	60.6
WP_000148263.1\|212909_213437_-\|plate	phage baseplate assembly protein V	Q6QIA1	Burkholderia_phage	1.5e-21	46.5
WP_000808000.1\|213433_214588_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	4.7e-84	47.1
WP_000478221.1\|214575_214788_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	2.4e-18	60.0
WP_000458383.1\|214787_215672_-\|tail	phage tail protein	A4JWL1	Burkholderia_virus	7.5e-50	47.0
WP_000135574.1\|215671_218137_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.2e-168	42.6
WP_001148841.1\|218230_218368_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_000084228.1\|218312_218648_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000110118.1\|218745_219027_-	hypothetical protein	NA	NA	NA	NA
WP_162828734.1\|219029_219554_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	4.7e-68	67.2
WP_000729859.1\|219550_220978_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	3.7e-216	77.4
WP_000666498.1\|220967_221219_-	hypothetical protein	NA	NA	NA	NA
WP_001101804.1\|221218_221683_-	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
WP_000271668.1\|221682_222129_-	DUF1320 domain-containing protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
WP_000537457.1\|222130_222469_-	DUF2190 family protein	NA	NA	NA	NA
WP_001286905.1\|222478_223432_-	hypothetical protein	A4JWK0	Burkholderia_virus	5.2e-65	44.5
WP_001273072.1\|223446_224562_-	hypothetical protein	A4JWJ9	Burkholderia_virus	7.9e-97	51.1
WP_000135517.1\|224776_225235_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	1.5e-30	44.8
WP_000117561.1\|225237_226059_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	5.3e-98	61.2
WP_000090679.1\|226039_227536_-	DUF935 domain-containing protein	A4JWJ5	Burkholderia_virus	8.0e-169	59.6
WP_170825686.1\|227535_229077_-	hypothetical protein	A4JWJ4	Burkholderia_virus	9.0e-184	62.6
WP_000124060.1\|229127_229673_-	DUF3486 family protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
WP_000227700.1\|229672_229984_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
WP_000175097.1\|229983_230310_-	membrane protein	Q6QIC4	Burkholderia_phage	9.6e-19	49.5
WP_000264664.1\|230306_230957_-	lipoprotein	Q5ZQY9	Pseudomonas_phage	8.1e-09	32.9
WP_001104436.1\|230940_231669_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.7e-61	57.4
WP_000793143.1\|231671_232022_-	membrane protein	A4JWP3	Burkholderia_virus	4.5e-22	53.0
WP_100208317.1\|232265_232862_-	nucleoid-associated protein	NA	NA	NA	NA
WP_144079282.1\|232905_233289_+	hypothetical protein	A4JWN3	Burkholderia_virus	1.7e-27	58.9
WP_000567463.1\|233298_233463_+	hypothetical protein	NA	NA	NA	NA
WP_000960673.1\|235246_236413_+	AAA family ATPase	A4JWN1	Burkholderia_virus	3.3e-122	59.7
WP_000843446.1\|236415_236685_+	hypothetical protein	NA	NA	NA	NA
WP_001140134.1\|236712_237243_+	host-nuclease inhibitor Gam family protein	L7P7T1	Pseudomonas_phage	3.4e-58	66.1
WP_000632575.1\|237531_237804_+	hypothetical protein	NA	NA	NA	NA
WP_000197790.1\|237813_238116_+	hypothetical protein	NA	NA	NA	NA
WP_001315283.1\|238112_238496_+	hypothetical protein	K7PJQ4	Enterobacteria_phage	2.3e-27	58.9
WP_153781233.1\|238503_238704_+	hypothetical protein	NA	NA	NA	NA
WP_000131941.1\|238700_239384_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	2.6e-34	37.3
WP_000631816.1\|239380_239611_+	hypothetical protein	NA	NA	NA	NA
WP_010989166.1\|239600_239816_+	hypothetical protein	NA	NA	NA	NA
WP_001315282.1\|239808_240258_+	regulatory protein GemA	A4JWM5	Burkholderia_virus	9.4e-25	46.6
WP_001281695.1\|240229_240619_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.5e-31	54.2
WP_000769298.1\|240800_241745_-	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001219360.1\|242271_243801_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha	NA	NA	NA	NA
WP_000014056.1\|243811_245200_+	Re/Si-specific NAD(P)(+) transhydrogenase subunit beta	NA	NA	NA	NA
WP_001118268.1\|245374_246409_-	AI-2E family transporter	NA	NA	NA	NA
WP_000500278.1\|246825_247188_+	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_001183821.1\|247174_247504_+	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_000549642.1\|247538_248360_-\|protease	serine protease	NA	NA	NA	NA
WP_048659080.1\|248628_248880_-	acid shock protein	NA	NA	NA	NA
WP_000431187.1\|249273_249456_+	hypothetical protein	NA	NA	NA	NA
WP_000502119.1\|249412_249871_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

693528 : 771727

Salmonella_phage(70.0%)

terminase,plate,tail,head,protease,holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938184.1\|693528_694209_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	4.1e-80	70.1
WP_000502118.1\|694416_694875_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000374046.1\|695537_696197_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|696283_696613_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|696609_696891_-	acylphosphatase	NA	NA	NA	NA
WP_000502118.1\|697627_698086_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000140485.1\|699217_700429_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|700486_700804_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|700848_701262_-	CoA-binding protein	NA	NA	NA	NA
WP_000847719.1\|701435_702098_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|702192_702651_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420526.1\|702686_704741_-	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_001261222.1\|704864_705311_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950867.1\|705329_707483_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202371.1\|707469_708075_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|708291_708801_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_010989142.1\|709155_710208_+	porin OmpA	NA	NA	NA	NA
WP_000877174.1\|710279_710732_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156455.1\|710917_712678_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|712746_713265_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001764860.1\|713364_713532_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|713785_714349_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|714345_715986_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|715990_717244_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053045.1\|717258_719166_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_050159212.1\|719178_721287_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	W6LLI2	Streptococcus_phage	5.1e-20	29.6
WP_000224084.1\|721385_722495_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|722491_723034_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291724.1\|723199_724210_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193884.1\|724417_727030_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	1.1e-19	22.6
WP_000480169.1\|728046_728748_+	DUF1076 domain-containing protein	NA	NA	NA	NA
WP_000421106.1\|729669_730188_-\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	1.7e-46	62.8
WP_001681975.1\|730202_731714_-	hypothetical protein	S4TP62	Salmonella_phage	1.5e-111	59.4
WP_000049938.1\|731713_732394_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	6.9e-128	98.7
WP_001197092.1\|732390_733590_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	8.5e-214	97.5
WP_001270647.1\|733590_733944_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.2e-60	98.3
WP_001685627.1\|734184_734940_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	4.1e-105	85.3
WP_001144794.1\|734998_735427_-	hypothetical protein	NA	NA	NA	NA
WP_000050472.1\|735426_736158_-	hypothetical protein	NA	NA	NA	NA
WP_000826019.1\|736352_736688_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.1e-20	52.2
WP_000042301.1\|736684_737716_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	1.2e-96	51.4
WP_000388505.1\|737718_738021_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	57.0
WP_000346974.1\|738024_738675_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.0e-56	60.6
WP_000990867.1\|738674_740627_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	1.8e-181	56.0
WP_000389047.1\|740804_741257_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.9e-57	76.6
WP_000257259.1\|741260_741701_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	3.5e-56	74.7
WP_001135544.1\|741712_742858_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.2e-163	74.5
WP_000389379.1\|742861_743425_-	hypothetical protein	A0A0M4R331	Salmonella_phage	8.9e-81	75.3
WP_001142488.1\|743399_743789_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	98.4
WP_000008737.1\|743775_744330_-	hypothetical protein	A0A0M4S631	Salmonella_phage	4.8e-95	100.0
WP_001125675.1\|744326_744734_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	7.1e-72	97.8
WP_001040702.1\|744699_745068_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_000627464.1\|745109_746051_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_000128060.1\|746062_746560_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000873182.1\|746564_747797_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	1.4e-227	99.0
WP_138010671.1\|747811_748549_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	7.8e-101	88.1
WP_000113511.1\|748433_749903_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.7e-280	99.2
WP_000204794.1\|749902_751306_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	6.5e-189	70.1
WP_001118118.1\|751271_752024_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	3.4e-11	56.5
WP_001070544.1\|752113_752341_-	hypothetical protein	NA	NA	NA	NA
WP_000495544.1\|752437_752815_-	hypothetical protein	Q6UAR9	Klebsiella_phage	4.9e-43	68.5
WP_001050879.1\|752857_753397_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.5e-08	38.4
WP_001075998.1\|753393_754008_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	3.2e-108	93.1
WP_000226307.1\|754007_754289_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-36	80.6
WP_001294876.1\|754275_754665_-\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	3.1e-40	70.2
WP_001534733.1\|755465_755591_-	hypothetical protein	NA	NA	NA	NA
WP_001047634.1\|755989_756787_-	antitermination protein	A0A0M4S661	Salmonella_phage	3.4e-150	99.2
WP_001617856.1\|756776_756923_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096560.1\|756919_757531_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	2.5e-92	99.5
WP_000929790.1\|757739_758342_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001217670.1\|758676_758916_-	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_000963896.1\|759100_759598_-	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_000509711.1\|759608_759788_-	hypothetical protein	NA	NA	NA	NA
WP_000208074.1\|760633_761206_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.3e-66	68.0
WP_000445792.1\|761209_761683_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000065105.1\|761682_762207_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_000113623.1\|762203_762551_-	DUF977 family protein	H6WRX9	Salmonella_phage	4.8e-53	90.4
WP_000800010.1\|762561_763311_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_001681803.1\|763313_764297_-	replication protein	H6WRX7	Salmonella_phage	2.1e-162	99.7
WP_001574095.1\|764381_764756_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000869365.1\|764721_764958_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.1e-37	98.7
WP_001009036.1\|765087_765492_+	transcriptional regulator	H6WRX4	Salmonella_phage	7.1e-72	99.3
WP_000186242.1\|765780_765981_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	2.4e-12	48.4
WP_000995349.1\|766071_766368_+	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	4.4e-47	96.9
WP_001764962.1\|766373_767159_+	phage recombination protein Bet	A0A0M4RD39	Salmonella_phage	9.7e-150	99.6
WP_000187053.1\|767155_767836_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	1.9e-130	98.7
WP_000034527.1\|767913_768978_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	6.3e-152	74.6
WP_010989138.1\|768974_769856_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A0M4R347	Salmonella_phage	1.2e-153	93.0
WP_001754984.1\|769861_770101_+	DUF4060 family protein	S4TR31	Salmonella_phage	9.7e-37	96.2
WP_000065276.1\|770141_770390_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262313.1\|770434_771727_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	5.0e-252	99.8

DBSCAN-SWA_3

840685 : 847996

Ralstonia_phage(16.67%)

protease,integrase

attL 835554:835568|attR 846732:846746

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
835554:835568	attL	NA	NA	NA	NA
WP_001539594.1\|840685_841063_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1\|841224_841422_+	hypothetical protein	NA	NA	NA	NA
WP_000934058.1\|841633_843910_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.8e-164	42.2
WP_000520789.1\|843939_844260_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|844583_844805_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125880.1\|844934_846881_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
846732:846746	attR	NA	NA	NA	NA
WP_001201759.1\|846877_847996_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_4

1460408 : 1547567

Salmonella_phage(42.11%)

tail,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000118732.1\|1460408_1461752_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001007105.1\|1461755_1462292_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000312802.1\|1462358_1462844_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_001171575.1\|1463080_1463506_-	hypothetical protein	NA	NA	NA	NA
WP_001147174.1\|1463477_1463879_-	BPSL0067 family protein	NA	NA	NA	NA
WP_000996818.1\|1465463_1466006_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000175184.1\|1466069_1466360_-	hypothetical protein	NA	NA	NA	NA
WP_000449770.1\|1466445_1469109_-	type VI secretion system ATPase TssH	A0A2I7SAX5	Vibrio_phage	9.8e-77	34.8
WP_000750542.1\|1470364_1471189_+	hypothetical protein	NA	NA	NA	NA
WP_000108006.1\|1471185_1471680_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000371495.1\|1471695_1473579_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000145233.1\|1473575_1474571_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001670675.1\|1476165_1476897_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	6.4e-39	39.9
WP_000917872.1\|1476960_1477428_+	ribonuclease HI	J9Q745	Salmonella_phage	4.7e-51	58.9
WP_000801233.1\|1477424_1478147_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001052766.1\|1478181_1478937_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_000644706.1\|1479008_1480376_+	murein transglycosylase D	A0A0A7NU10	Lactobacillus_phage	1.4e-10	33.0
WP_000207227.1\|1480431_1481202_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001230964.1\|1481279_1482080_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_001127546.1\|1482211_1483387_-	MFS transporter	NA	NA	NA	NA
WP_000648539.1\|1483491_1484406_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000154870.1\|1484426_1485230_-	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.7e-38	35.4
WP_001235094.1\|1491261_1493835_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
WP_000992642.1\|1493964_1494696_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|1494692_1495673_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197667.1\|1495804_1496542_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|1496813_1497152_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_010989056.1\|1497255_1497303_+	hypothetical protein	NA	NA	NA	NA
WP_000200079.1\|1497402_1498563_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210976.1\|1498523_1499432_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225191.1\|1499489_1500611_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|1500620_1501691_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212373.1\|1502130_1502649_+	YfiR family protein	NA	NA	NA	NA
WP_001030993.1\|1502641_1503862_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	1.7e-07	37.0
WP_000065257.1\|1504018_1504366_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469802.1\|1504406_1505174_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|1505218_1505767_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|1505785_1506034_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|1506377_1507739_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|1507904_1508696_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|1508715_1510002_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001682111.1\|1510122_1510680_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|1510761_1511352_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|1511475_1512354_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880973.1\|1512439_1514101_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|1514249_1514588_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|1514753_1515044_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|1515033_1515510_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|1515659_1516142_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237656.1\|1516761_1527636_+	Ig-like domain repeat protein	NA	NA	NA	NA
WP_000533850.1\|1527699_1529109_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_010989217.1\|1531292_1532456_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_000151542.1\|1532998_1533772_-	reverse transcriptase	NA	NA	NA	NA
WP_000380485.1\|1533740_1533914_-	hypothetical protein	NA	NA	NA	NA
WP_000972389.1\|1534175_1534394_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-18	71.9
WP_001011760.1\|1534484_1535585_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000980381.1\|1535581_1536067_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001282796.1\|1536063_1539141_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000763311.1\|1539133_1539253_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001280897.1\|1539267_1539570_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_001207656.1\|1539624_1540140_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_000046142.1\|1540149_1541322_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_000905027.1\|1541464_1542031_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_001221113.1\|1542714_1543830_+	salmochelin biosynthesis C-glycosyltransferase IroB	NA	NA	NA	NA
WP_001111827.1\|1543910_1547567_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.0e-44	28.6

DBSCAN-SWA_5

1865576 : 1908758

Bacillus_virus(25.0%)

bacteriocin,tRNA,integrase,protease,transposase

attL 1855692:1855705|attR 1914689:1914702

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1855692:1855705	attL	NA	NA	NA	NA
WP_001204111.1\|1865576_1866035_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000034386.1\|1866224_1867304_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000111274.1\|1867405_1868569_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_000218338.1\|1868590_1869637_-	erythrose-4-phosphate dehydrogenase	NA	NA	NA	NA
WP_000218564.1\|1870010_1870436_+	DNA-binding protein	NA	NA	NA	NA
WP_000124001.1\|1870461_1871040_+	ECF transporter S component	NA	NA	NA	NA
WP_000553254.1\|1871040_1871748_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_001775599.1\|1871735_1872413_+	energy-coupling factor ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_000956919.1\|1872406_1873063_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	1.6e-09	28.6
WP_000502119.1\|1873167_1873626_-\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000098658.1\|1873814_1875806_-	transketolase	NA	NA	NA	NA
WP_000701830.1\|1876081_1876840_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_000105550.1\|1876940_1877861_-	agmatinase	NA	NA	NA	NA
WP_001278580.1\|1878088_1880065_-	biosynthetic arginine decarboxylase	NA	NA	NA	NA
WP_000729109.1\|1880073_1880205_-	acid stress response protein YqgB	NA	NA	NA	NA
WP_077905074.1\|1880338_1880503_+	hypothetical protein	NA	NA	NA	NA
WP_001803086.1\|1880499_1880799_-	hypothetical protein	NA	NA	NA	NA
WP_001062140.1\|1880854_1882009_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.5e-130	63.9
WP_001113171.1\|1882501_1883896_+	galactose/proton symporter	NA	NA	NA	NA
WP_000856775.1\|1883974_1884472_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_000286121.1\|1884567_1885275_+	deoxyribonuclease I	NA	NA	NA	NA
WP_001800534.1\|1885351_1886083_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_000593242.1\|1886102_1887050_+	glutathione synthase	NA	NA	NA	NA
WP_001053167.1\|1887265_1887829_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_001285491.1\|1887828_1888245_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000098333.1\|1888291_1888978_-	global regulatory protein	NA	NA	NA	NA
WP_001055657.1\|1889107_1890088_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_000997790.1\|1890105_1890810_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001094848.1\|1890828_1891395_+	YggT family protein	NA	NA	NA	NA
WP_001277205.1\|1891391_1891682_+	YggU family protein	NA	NA	NA	NA
WP_001174773.1\|1891689_1892283_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_001096530.1\|1892275_1893412_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_000252198.1\|1893502_1894510_-	DUF1202 domain-containing protein	NA	NA	NA	NA
WP_000394189.1\|1894642_1895689_-	L-asparaginase 2	NA	NA	NA	NA
WP_000502119.1\|1896007_1896466_+\|transposase	IS200/IS605-like element IS200F family transposase	NA	NA	NA	NA
WP_000984827.1\|1896588_1897308_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107559.1\|1897357_1897684_-	YggL family protein	NA	NA	NA	NA
WP_000786887.1\|1897683_1898403_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_001148958.1\|1898557_1899610_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091706.1\|1899637_1899913_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000976287.1\|1900025_1901111_+	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
WP_001049802.1\|1901327_1902584_+	nucleoside permease	NA	NA	NA	NA
WP_000234466.1\|1905194_1905902_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_001681938.1\|1906243_1906528_+	DUF4102 domain-containing protein	A0A0P0IRB7	Acinetobacter_phage	3.2e-10	35.2
WP_014341481.1\|1906712_1907057_+\|integrase	integrase	NA	NA	NA	NA
WP_001141622.1\|1908177_1908495_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_000768134.1\|1908491_1908758_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
1914689:1914702	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2746426 : 2838781

101

Escherichia_phage(35.56%)

lysis,tRNA,terminase,capsid,integrase,tail,plate,head,portal,protease,holin

attL 2779231:2779277|attR 2808879:2808925

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560975.1\|2746426_2746864_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001259009.1\|2747863_2748310_-	type II toxin-antitoxin system HigA family antitoxin	NA	NA	NA	NA
WP_000558160.1\|2748306_2748618_-	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_001162859.1\|2748703_2749633_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001523745.1\|2749837_2750080_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_000238494.1\|2750079_2750454_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_000027727.1\|2750491_2751421_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829025.1\|2751417_2752053_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331359.1\|2752049_2752952_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_010989259.1\|2752964_2756015_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	4.6e-06	24.1
WP_001059746.1\|2756209_2757046_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_000710970.1\|2757321_2758353_-	YiiG family protein	NA	NA	NA	NA
WP_000828046.1\|2758534_2759635_+	DUF3829 domain-containing protein	NA	NA	NA	NA
WP_000683586.1\|2760300_2760960_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_010989258.1\|2761042_2761609_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000619478.1\|2761697_2762012_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_000009255.1\|2762008_2763157_-	lactaldehyde reductase	NA	NA	NA	NA
WP_000211475.1\|2764167_2765427_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_000143961.1\|2765423_2766893_-	rhamnulokinase	NA	NA	NA	NA
WP_000217112.1\|2767180_2768017_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_000013291.1\|2768169_2769018_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063537.1\|2769014_2770049_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_000378721.1\|2770667_2771351_+	hypothetical protein	NA	NA	NA	NA
WP_000566798.1\|2771506_2772814_-	TRAP transporter large permease	NA	NA	NA	NA
WP_001091409.1\|2772806_2773322_-	TRAP transporter small permease	NA	NA	NA	NA
WP_000122632.1\|2774651_2775272_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9
WP_000559225.1\|2775341_2776031_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000133445.1\|2776042_2776438_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000580402.1\|2776488_2777862_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_001033727.1\|2777858_2778557_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	6.9e-06	30.3
WP_001233466.1\|2778707_2779208_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
2779231:2779277	attL	NA	NA	NA	NA
WP_000023386.1\|2779392_2780373_-\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	2.3e-185	99.7
WP_001192857.1\|2780442_2780736_-	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
WP_000453534.1\|2780888_2781161_+	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
WP_001333116.1\|2781136_2781334_+	hypothetical protein	S4TNZ7	Salmonella_phage	3.6e-29	98.5
WP_000217679.1\|2781330_2781831_+	hypothetical protein	S4TTB7	Salmonella_phage	1.0e-91	100.0
WP_000557701.1\|2781894_2782119_+	DUF2732 family protein	S4TP68	Salmonella_phage	3.0e-32	98.6
WP_001277945.1\|2782118_2782418_+	DUF5405 family protein	S4TUD1	Salmonella_phage	5.6e-42	93.9
WP_001113276.1\|2782420_2782645_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	1.5e-34	98.6
WP_000027664.1\|2782641_2782917_+	DUF5405 family protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_048659689.1\|2782906_2785189_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	98.3
WP_016236400.1\|2785365_2785563_+	hypothetical protein	NA	NA	NA	NA
WP_000556577.1\|2785559_2786666_-	Fic family protein	S4TP71	Salmonella_phage	7.2e-159	78.0
WP_000038161.1\|2787216_2788251_-\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	1.9e-201	100.0
WP_000156853.1\|2788250_2790023_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.7
WP_001085952.1\|2790196_2791051_+\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	8.6e-136	99.3
WP_001248583.1\|2791109_2792183_+\|capsid	phage major capsid protein, P2 family	Q94MK2	Enterobacteria_phage	6.7e-202	100.0
WP_016239051.1\|2792186_2792930_+\|terminase	terminase endonuclease subunit	Q94MH8	Enterobacteria_phage	1.2e-125	99.6
WP_000988633.1\|2793029_2793539_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_001773438.1\|2793538_2793742_+\|tail	tail protein X	A0A0F7LCK1	Escherichia_phage	8.8e-31	98.5
WP_000123124.1\|2793745_2794027_+\|holin	phage holin family protein	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_001144098.1\|2794026_2794524_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	6.9e-93	99.4
WP_000736558.1\|2794538_2794964_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	2.3e-60	97.2
WP_000040653.1\|2794951_2795377_+\|lysis	LysB family phage lysis regulatory protein	Q7Y4E2	Escherichia_virus	2.7e-66	95.7
WP_000917182.1\|2795484_2795952_+\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	1.9e-81	99.4
WP_001001771.1\|2795944_2796397_+	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	1.0e-74	97.3
WP_001093738.1\|2796463_2797099_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	5.9e-113	98.1
WP_000127160.1\|2797095_2797443_+	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	1.1e-57	99.1
WP_001121475.1\|2797447_2798356_+\|plate	baseplate assembly protein	A0A0F7LCQ9	Escherichia_phage	3.4e-162	100.0
WP_001000067.1\|2798348_2798879_+\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	9.5e-101	97.7
WP_000104690.1\|2798889_2800707_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	8.9e-122	61.4
WP_001761804.1\|2800706_2801285_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.5e-67	66.0
WP_001286727.1\|2801413_2802604_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	4.8e-225	99.7
WP_001251408.1\|2802616_2803135_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031307.1\|2803191_2803467_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.2e-40	98.9
WP_000785970.1\|2803499_2803619_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_000069969.1\|2803611_2806059_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	96.4
WP_000978916.1\|2806073_2806553_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	2.5e-84	98.7
WP_000882956.1\|2806552_2807716_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	4.1e-205	99.7
WP_000468308.1\|2807796_2808015_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001145759.1\|2808283_2808796_+	hypothetical protein	NA	NA	NA	NA
WP_001077323.1\|2809003_2809900_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
2808879:2808925	attR	NA	NA	NA	NA
WP_000591793.1\|2810084_2811047_+	6-phosphofructokinase	NA	NA	NA	NA
WP_050159237.1\|2811250_2812240_+	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000750765.1\|2812340_2813096_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000646490.1\|2814706_2815666_+	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000557877.1\|2815675_2816716_+	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_001764005.1\|2816778_2817501_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000061016.1\|2817598_2817769_+	hypothetical protein	NA	NA	NA	NA
WP_001173084.1\|2818074_2818356_-	cupin domain-containing protein	NA	NA	NA	NA
WP_000113082.1\|2818369_2819962_-	autoinducer-2 kinase	NA	NA	NA	NA
WP_001283049.1\|2820048_2821008_-	transcriptional regulator LsrR	NA	NA	NA	NA
WP_001167253.1\|2821263_2822799_+	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	3.7e-20	30.4
WP_000911130.1\|2822792_2823836_+	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_000981827.1\|2823832_2824834_+	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000090739.1\|2824862_2825885_+	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000774152.1\|2825913_2826789_+	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_001543603.1\|2826871_2827162_+	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_001088043.1\|2827171_2827936_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_001216342.1\|2828027_2828795_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802241.1\|2828907_2829504_-	YiiQ family protein	NA	NA	NA	NA
WP_000155237.1\|2829604_2830033_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000796307.1\|2830139_2830886_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250624.1\|2830982_2831993_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000137244.1\|2832104_2833610_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084284.1\|2833630_2834476_-	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000051368.1\|2834874_2835114_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872918.1\|2835335_2835821_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000139635.1\|2835913_2836843_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293355.1\|2836909_2838241_-	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	6.4e-45	28.5
WP_000208240.1\|2838250_2838781_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_7

2878625 : 2970198

Salmonella_phage(68.75%)

lysis,tRNA,terminase,capsid,integrase,plate,tail,head,portal,transposase

attL 2868125:2868139|attR 2970998:2971012

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2868125:2868139	attL	NA	NA	NA	NA
WP_000186987.1\|2878625_2879726_-\|tRNA	tRNA (uridine(54)-C5)-methyltransferase TrmA	NA	NA	NA	NA
WP_000591414.1\|2880099_2881944_+	TonB-dependent vitamin B12 receptor BtuB	A0A0P0I887	Acinetobacter_phage	2.2e-11	30.0
WP_000201804.1\|2881888_2882740_+	glutamate racemase	NA	NA	NA	NA
WP_000149790.1\|2888650_2889679_+	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_000655746.1\|2889675_2890638_+	bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA	NA	NA	NA	NA
WP_000023068.1\|2890672_2891623_-	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	7.9e-29	32.5
WP_001775645.1\|2891831_2892005_-	hypothetical protein	NA	NA	NA	NA
WP_000031748.1\|2892581_2893766_+	elongation factor Tu	A0A2K9L516	Tupanvirus	2.6e-13	26.5
WP_001275691.1\|2893995_2894379_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_001287521.1\|2894380_2894926_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA
WP_001085926.1\|2895083_2895512_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_001096676.1\|2895515_2896220_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_001207203.1\|2896635_2897133_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_000028882.1\|2897199_2897565_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_000263105.1\|2897882_2901911_+	DNA-directed RNA polymerase subunit beta	A0A0N9R0J7	Chrysochromulina_ericina_virus	9.4e-23	29.0
WP_000653965.1\|2901987_2906211_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	5.0e-67	27.1
WP_001576436.1\|2906252_2906576_+	membrane protein	NA	NA	NA	NA
WP_031624270.1\|2906581_2906926_-	hypothetical protein	NA	NA	NA	NA
WP_000359982.1\|2907379_2907595_+	hypothetical protein	NA	NA	NA	NA
WP_000643282.1\|2907675_2908809_-	2-iminoacetate synthase ThiH	NA	NA	NA	NA
WP_000944065.1\|2908805_2909576_-	thiazole synthase	NA	NA	NA	NA
WP_001166848.1\|2909577_2909778_-	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_000999774.1\|2909758_2910517_-	HesA/MoeB/ThiF family protein	A0A1V0SAV8	Catovirus	7.0e-12	28.5
WP_000284626.1\|2910509_2911145_-	thiamine phosphate synthase	NA	NA	NA	NA
WP_048660668.1\|2911144_2913040_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_000934311.1\|2913403_2913892_-	sigma D regulator	NA	NA	NA	NA
WP_000373954.1\|2913984_2914758_+	NAD(+) diphosphatase	NA	NA	NA	NA
WP_000137619.1\|2914798_2915863_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_000362359.1\|2915872_2916544_+	deoxyribonuclease V	A0A1V0SJW5	Klosneuvirus	2.1e-20	28.7
WP_000940092.1\|2916585_2917176_+	YjaG family protein	NA	NA	NA	NA
WP_001044509.1\|2917362_2917635_+	DNA-binding protein HU-alpha	A7KV42	Bacillus_phage	5.5e-20	57.8
WP_000828129.1\|2918379_2918835_-	zinc resistance sensor/chaperone ZraP	NA	NA	NA	NA
WP_001772857.1\|2919088_2920486_+	two-component system sensor histidine kinase ZraS	NA	NA	NA	NA
WP_000617932.1\|2920491_2921817_+	sigma-54-dependent response regulator transcription factor ZraR	NA	NA	NA	NA
WP_000866776.1\|2921813_2923103_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_001187501.1\|2923118_2924708_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	8.4e-68	47.4
WP_001541181.1\|2930767_2931616_-	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA
WP_000840996.1\|2931722_2932061_+	macrodomain Ori organization protein MaoP	NA	NA	NA	NA
WP_000502114.1\|2932168_2932627_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_000972391.1\|2934208_2934427_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001011760.1\|2934517_2935618_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.0e-176	88.3
WP_000980381.1\|2935614_2936100_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.4e-66	80.0
WP_001282796.1\|2936096_2939174_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000763311.1\|2939166_2939286_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001280897.1\|2939300_2939603_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	7.0e-40	89.0
WP_001207656.1\|2939657_2940173_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	5.6e-90	95.9
WP_000046142.1\|2940182_2941355_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.5e-204	90.3
WP_000905046.1\|2941497_2942064_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_001086816.1\|2944980_2945586_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.0
WP_000268271.1\|2945578_2946487_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.3e-142	89.7
WP_000177595.1\|2946473_2946833_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.1e-51	84.9
WP_000993754.1\|2946829_2947408_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	5.5e-94	86.5
WP_000829146.1\|2947476_2947923_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	6.6e-63	85.6
WP_001039939.1\|2947915_2948347_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-72	95.1
WP_001080928.1\|2948442_2948871_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	77.3
WP_000727853.1\|2948867_2949245_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.3e-16	40.0
WP_001069905.1\|2949246_2949759_-	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000171568.1\|2949739_2949955_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|2949958_2950162_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673504.1\|2950161_2950626_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.4e-76	89.0
WP_000059191.1\|2950721_2951372_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000742518.1\|2951375_2952434_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.4e-180	93.1
WP_000216244.1\|2952450_2953284_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.5e-121	90.6
WP_001098422.1\|2953426_2955193_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
WP_000518064.1\|2955192_2956230_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.3e-173	89.5
WP_000185757.1\|2956264_2957005_-	restriction endonuclease	NA	NA	NA	NA
WP_001146827.1\|2957001_2957916_-	hypothetical protein	NA	NA	NA	NA
WP_001251692.1\|2958529_2959408_+	hypothetical protein	A0A2H4J8D6	uncultured_Caudovirales_phage	6.1e-52	49.4
WP_000822803.1\|2959516_2959816_+	hypothetical protein	NA	NA	NA	NA
WP_001580533.1\|2959883_2960072_-	hypothetical protein	E5G6M0	Salmonella_phage	7.9e-26	95.2
WP_000017503.1\|2960225_2962640_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_000104152.1\|2962636_2963494_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.2
WP_000752613.1\|2963490_2963718_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_001244218.1\|2963717_2963951_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	2.0e-31	94.8
WP_000996717.1\|2964018_2964360_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_000956176.1\|2964477_2964774_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	4.9e-22	90.4
WP_000460893.1\|2964781_2965291_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_001247706.1\|2965323_2965545_-	hypothetical protein	NA	NA	NA	NA
WP_001047327.1\|2965670_2966240_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	2.5e-38	43.4
WP_000900883.1\|2966255_2966447_+	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
WP_000290950.1\|2966635_2967688_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_001311244.1\|2968313_2968412_+	ilv operon leader peptide	NA	NA	NA	NA
WP_001012546.1\|2968551_2970198_+	acetolactate synthase 2 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	1.5e-64	31.5
2970998:2971012	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3347548 : 3360202

Enterobacteria_phage(50.0%)

integrase

attL 3338083:3338096|attR 3351214:3351227

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3338083:3338096	attL	NA	NA	NA	NA
WP_000152561.1\|3347548_3349039_-	alcohol dehydrogenase catalytic domain-containing protein	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	4.0e-11	36.1
WP_000772672.1\|3349509_3350775_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.6e-74	41.0
WP_000573583.1\|3350837_3351914_-	serine/threonine protein kinase	A0A2H4UU60	Bodo_saltans_virus	7.8e-17	28.2
3351214:3351227	attR	NA	NA	NA	NA
WP_000700163.1\|3351910_3352969_-	serine/threonine protein kinase	G9BWE0	Planktothrix_phage	4.9e-56	44.7
WP_000493739.1\|3352958_3354122_-	hypothetical protein	NA	NA	NA	NA
WP_000214423.1\|3354397_3354964_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.8e-60	64.9
WP_000468230.1\|3354979_3355219_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	3.7e-20	60.5
WP_001779443.1\|3355222_3355966_-	hypothetical protein	NA	NA	NA	NA
WP_015701354.1\|3356761_3357313_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	70.4
WP_001216603.1\|3357309_3357537_+	hypothetical protein	NA	NA	NA	NA
WP_000795388.1\|3357533_3357854_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000783716.1\|3357868_3360202_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	86.5

DBSCAN-SWA_9

4013622 : 4019653

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106417237.1\|4013622_4013769_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	1.1e-14	73.9
WP_106417236.1\|4013784_4013928_+	hypothetical protein	A0A1R3Y5S2	Salmonella_virus	9.0e-14	87.8
WP_000400611.1\|4014917_4016840_-	acyltransferase	A0A1R3Y5Q6	Salmonella_virus	5.6e-300	77.2
WP_000703599.1\|4016856_4017111_-	glycosyltransferase	A8CG95	Salmonella_phage	3.1e-25	79.5
WP_001682026.1\|4017079_4017469_-	GtrA family protein	A0A192Y6N5	Salmonella_phage	6.9e-56	91.5
WP_000377769.1\|4018711_4019653_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	2.4e-147	88.2

DBSCAN-SWA_10

4254160 : 4263331

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569166.1\|4254160_4255108_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824854.1\|4255091_4255823_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|4255803_4255911_-	protein YohO	NA	NA	NA	NA
WP_001240415.1\|4255970_4256702_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272853.1\|4256924_4258610_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.1e-278	91.1
WP_000598632.1\|4258606_4259326_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|4259372_4259840_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|4259896_4260427_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|4260598_4261057_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195338.1\|4261297_4263331_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_11

4339222 : 4348389

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111852.1\|4339222_4340626_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.1e-21	26.5
WP_000981469.1\|4340803_4341697_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697846.1\|4342073_4343159_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-102	53.9
WP_001023656.1\|4343158_4344058_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	7.9e-31	36.3
WP_000857536.1\|4344105_4344984_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.3e-107	64.8
WP_000973711.1\|4344984_4345536_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.7e-53	58.6
WP_000018220.1\|4345541_4346516_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|4346531_4347305_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565909.1\|4347309_4348389_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.1

DBSCAN-SWA_12

4433470 : 4440704

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|4433470_4433890_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457648.1\|4433892_4435161_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	3.3e-224	91.2
WP_000208507.1\|4435606_4435819_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	1.5e-20	70.0
WP_024131163.1\|4435829_4436018_+	hypothetical protein	NA	NA	NA	NA
WP_001080666.1\|4436278_4437463_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.4e-107	56.4
WP_000107435.1\|4438113_4438425_+	hypothetical protein	NA	NA	NA	NA
WP_000377043.1\|4438504_4439200_+	phosphohydrolase	S4W232	Pandoravirus	2.1e-07	27.5
WP_001157299.1\|4439273_4440704_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_13

4644367 : 4648779

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000281950.1\|4644367_4644781_+	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	1.4e-19	38.6
WP_001766395.1\|4644797_4645526_+	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	4.9e-63	53.3
WP_000158843.1\|4645717_4646260_+	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	6.2e-71	67.0
WP_001277616.1\|4646407_4646785_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	2.2e-14	38.4
WP_001529135.1\|4646857_4647667_-	cytolethal distending toxin S-CDT	A5LH53	Enterobacteria_phage	2.1e-62	50.0
WP_000497451.1\|4648539_4648779_-	virulence protein MsgA	K7P6H1	Enterobacteria_phage	8.5e-33	88.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT905062

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection