CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_LT906621	Limosilactobacillus fermentum strain IMDO 130101 chromosome I	3 crisprs	cas14j,cas3,DEDDh,cas9,cas1,cas2,csn2,WYL,DinG,cas6e,cas5,cas7,cse2gr11,cas8e,csa3	0	21	12	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_LT906621_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906621_1

289106-289451

Unclear

Consensus_repeat	Method
AAAAGGGTGGNGAAGCCACTGC	CRT

5 spacers

cas3

The CRISPR arrays of NZ_LT906621_1

>merge|NZ_LT906621|1|289106-289451|CRT
AAAAGGGTGGCGAAGCCACTGCCAAATCGCACGACAAAGATTTTTACGAAAAAATTGGAAAAAAGGGTGGCGAAGCCACTGCTAAGTCACATGATAAAGATTTCTACCAAGAAAATGGTGAAAAAGGTGGTCAAAAGGGTGGTGAAGCCACTGCCAAATCGCACGGCAAAGATTTTTACGAAAAAATTGGGAAAAAGGGTGGTGAAGCCACTGCTAAGTCACATGATAAAGATTTCTACCAAGAAAATGGTGAAAAAGGTGGTCAAAAGGGTGGCGAAGCCACTGCCAAATCGCACGGCAAAGATTTTTACGAAAAAATTGGAAAAAAGGGTGGTAAAGCCACTGC

>NZ_LT906621|1|1|289106-289451|CRT
AAAAGGGTGGCGAAGCCACTGC	CAAATCGCACGACAAAGATTTTTACGAAAAAATTGGAA
AAAAGGGTGGCGAAGCCACTGC	TAAGTCACATGATAAAGATTTCTACCAAGAAAATGGTGAAAAAGGTGGTC
AAAAGGGTGGTGAAGCCACTGC	CAAATCGCACGGCAAAGATTTTTACGAAAAAATTGGGA
AAAAGGGTGGTGAAGCCACTGC	TAAGTCACATGATAAAGATTTCTACCAAGAAAATGGTGAAAAAGGTGGTC
AAAAGGGTGGCGAAGCCACTGC	CAAATCGCACGGCAAAGATTTTTACGAAAAAATTGGAA
AAAAGGGTGGTAAAGCCACTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906621.1\|WP_104877824.1\|301473_303699_+\|SEC10/PgrA-surface-exclusion-domain-containing-protein	unknown	unknown	gnl\|CDD\|275124
NZ_LT906621.1\|WP_104877819.1\|293050_294613_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370572
NZ_LT906621.1\|WP_099032501.1\|276129_278295_+\|ATP-dependent-zinc-metalloprotease-FtsH	unknown	unknown	gnl\|CDD\|273520
NZ_LT906621.1\|WP_104877820.1\|294707_294896_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906621.1\|WP_104877817.1\|289647_290520_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187613
NZ_LT906621.1\|WP_012390804.1\|272778_273051_+\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_LT906621.1\|WP_012390806.1\|278371_279253_+\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_LT906621.1\|WP_003684059.1\|279341_280343_+\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
NZ_LT906621.1\|WP_104877814.1\|274131_275481_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950
NZ_LT906621.1\|WP_104877813.1\|269239_272779_+\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_LT906621.1\|WP_104877825.1\|303931_305428_+\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_LT906621.1\|WP_057195299.1\|273625_274132_+\|RNA-binding-protein-S1	unknown	unknown	gnl\|CDD\|236305
NZ_LT906621.1\|WP_104877823.1\|295641_300078_+\|KxYKxGKxW-signal-peptide-domain-containing-protein	unknown	unknown	gnl\|CDD\|334895
NZ_LT906621.1\|WP_003686487.1\|273139_273496_+\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|368217
NZ_LT906621.1\|WP_104877821.1\|294885_295242_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	unknown	unknown	gnl\|CDD\|377551
NZ_LT906621.1\|WP_104877822.1\|295243_295465_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379402
NZ_LT906621.1\|WP_104877778.1\|291901_292834_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_LT906621.1\|WP_003686497.1\|280358_281852_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_LT906621.1\|WP_068805819.1\|291214_291574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|340879
NZ_LT906621.1\|WP_104877815.1\|275497_276046_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707

Protein	Function_ID	Function_description	E-value
NZ_LT906621.1\|WP_104877824.1\|301473_303699_+\|SEC10/PgrA-surface-exclusion-domain-containing-protein	gnl\|CDD\|275124	TIGR04320, hypothetical_protein, SEC10/PgrA surface exclusion domain. This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.	2.82716e-28
NZ_LT906621.1\|WP_104877819.1\|293050_294613_+\|hypothetical-protein	gnl\|CDD\|370572	pfam09586, YfhO, Bacterial membrane protein YfhO. This protein is a conserved membrane protein. The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system. Some members of this family have been annotated as glycosyl transferases of the PMT family.	2.99839e-06
NZ_LT906621.1\|WP_099032501.1\|276129_278295_+\|ATP-dependent-zinc-metalloprotease-FtsH	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_LT906621.1\|WP_104877817.1\|289647_290520_+\|SDR-family-oxidoreductase	gnl\|CDD\|187613	cd05355, SDR_c1, classical (c) SDR, subgroup 1. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.64029e-119
NZ_LT906621.1\|WP_012390804.1\|272778_273051_+\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	2.56654e-28
NZ_LT906621.1\|WP_012390806.1\|278371_279253_+\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	2.85002e-151
NZ_LT906621.1\|WP_003684059.1\|279341_280343_+\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	2.39692e-126
NZ_LT906621.1\|WP_104877814.1\|274131_275481_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	3.53416e-83
NZ_LT906621.1\|WP_104877813.1\|269239_272779_+\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_LT906621.1\|WP_104877825.1\|303931_305428_+\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	2.17794e-145
NZ_LT906621.1\|WP_057195299.1\|273625_274132_+\|RNA-binding-protein-S1	gnl\|CDD\|236305	PRK08582, PRK08582, RNA-binding protein S1.	4.07127e-51
NZ_LT906621.1\|WP_104877823.1\|295641_300078_+\|KxYKxGKxW-signal-peptide-domain-containing-protein	gnl\|CDD\|334895	pfam02324, Glyco_hydro_70, Glycosyl hydrolase family 70. Members of this family belong to glycosyl hydrolase family 70 Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) catalyze the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules, EC:2.4.1.5. This family roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this family also contain the Putative cell wall binding domain pfam01473, which corresponds with the C-terminal glucan-binding domain.	5.70781e-169
NZ_LT906621.1\|WP_003686487.1\|273139_273496_+\|septum-formation-initiator-family-protein	gnl\|CDD\|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	3.663e-07
NZ_LT906621.1\|WP_104877821.1\|294885_295242_+\|IS66-family-insertion-sequence-element-accessory-protein-TnpB	gnl\|CDD\|377551	pfam05717, TnpB_IS66, IS66 Orf2 like protein. This protein is found in insertion sequences related to IS66. The function of these proteins is uncertain, but they are probably essential for transposition.	1.52746e-39
NZ_LT906621.1\|WP_104877822.1\|295243_295465_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379402	pfam13936, HTH_38, Helix-turn-helix domain. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	4.73421e-12
NZ_LT906621.1\|WP_104877778.1\|291901_292834_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.65825e-76
NZ_LT906621.1\|WP_003686497.1\|280358_281852_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_LT906621.1\|WP_068805819.1\|291214_291574_-\|hypothetical-protein	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0.00459806
NZ_LT906621.1\|WP_104877815.1\|275497_276046_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	7.66621e-87

>NZ_LT906621.1|WP_003686497.1|280358_281852_+|lysine--tRNA-ligase
MANEEHLNDQMVVRREKMQALRDQGVAPFGHRFDPDHDLSTDIRKKYENDSGELLLAQHNVVTIAGRMIGKRGSGKASFADLLDRGGKIQFYVRQDMVGEEAYKLFKESDLGDFWGITGDVIKTRMGELTVRAEKITFLSKALRPLPDKYHGLQDPELVYRQRYLDLITNRESFERFQTRTKIIKAVRRYMDDNGFLEVETPILENIASGAEARPFVTHHNALNIDMYMRIATELRLKRLIVGGMERVYELGRIFRNEGMDPYHNPEFDTMETYAAYFDFNDVMKETEGIFKAAAGVVADDLKITYQGTELDFSTSFKRLHMVDAIKEATGIDFWQEMTVEEARKLADDNGIKYESWWKVGHIINAFFEEKVQDTLEQPIFIYGHPVEVSPLAKINEEDSRFTDRFELYILGKEYANAFSELNDPIDQRKRFEAQAQENAEGNDEAQPIDEDFVEALEYGMPPTGGLGVGIDRMVMLMTDAKSIRDVLLFPTMRPKK
>NZ_LT906621.1|WP_003684059.1|279341_280343_+|tRNA-dihydrouridine-synthase-DusB
MEWKIGSVTIPNQVVVAPMAGVMNTAFRVICKKFGAGYVVSEMISDRGIMYHNKKTLQMMGVDPVEHPMGLQIFGGTKETLVEAAKFVDENTDADVIDINMGCPVNKIVNTEAGSRWLLDPNKVYEMVSYVTDAVKKPVTVKMRTGWDDQHIFAVENALAAQRAGAAAVAMHGRTRKQMYRGHADWDILKEVASQLTIPFMANGDIKTAEEAKYVLEYTGADAIMIGRAAMGNPWMLTQTVHYLENGELLPEATPEEKITTAKEHLARLVDLKGEYAGVREFRGQAAYYMKGIPRAARTKVALMEATEQAQMDEIFDRFIDQYEERQLQQNVN
>NZ_LT906621.1|WP_012390806.1|278371_279253_+|Hsp33-family-molecular-chaperone-HslO
MEDYLVKSVAENGQFRAYAVNATALVEEAHQIHDTWSAASAALGRAMVGTLLLATSGLQGEAGMTVKIQGDGPVGFIVVDGTAQGTVKAYMQNPHVHLPLNAKGKIDVAGAVGKTGTLSVTKMAPGDKTPYTGEVNLVSGELGDDFTYYLAQSEQIPSAVGLSVFVQSDDHIEVAGGFLIQVLPGASDEAINHLETTLRELPLVSDLLREGKTPEQILETIFAGRDLKILEKMPVEYKCDCSKDRFEKALASLSKDDLQEMIDNDHGAEAVCRFCGHKYHFSEEELKYLVATK
>NZ_LT906621.1|WP_099032501.1|276129_278295_+|ATP-dependent-zinc-metalloprotease-FtsH
MNNNRKNNGFSHNVLFYSVIFLCIMGIAYFLFGGNGTTSQSKNLSQSEFISALKSDKVKSFQLQPDGGVYRITGTYRKAQPVSSSSTTGFSLGGQSASSTTNFESSVLESDVTIAQLQKYAEKEKVEVSTKSEESNSLWMNLLVTVLPLVIMIFFFYMMMGQAGQGGGGRGVMNFGKTKTKPSDSKENKVRFSDVAGEEEEKQELVEIVEFLKNPKKFMRLGARIPAGVLLEGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKAAPSIIFIDEIDAVGRRRGNGMGGGHDEREQTLNQLLVEMDGFQGDEGVIVMAATNRSDVLDPALLRPGRFDRKILVGRPDVKGREAILRVHAKNKPLASNVDLKEIAKQTPGFVGADLENLLNEAALLAARRDRTEIDAADIDEAEDRVIAGPAKRDRVISPRERNTVAYHEAGHTIVGLVLNDARVVHKVTIVPRGRAGGYAIMLPREDEMLMSKKNAEEQIAGLMGGRAAEEIIFKSQSSGASNDFEQATQIARAMVTQYGMSDKIGPVELQSSGQVFTGQGYDQSPYSEQTAALVDQEVRRILLEGHEQALHIIETHREQHKLIAEALLKYETLDEKQILSLYKTGKMPEEDVVAAEDEQHAQTFEESKRELERRENAKAEATEEDAEQTTSQTEGDEQSTPQATDAEQDKQADQTDQTKPTDPDQPDDRDHRE
>NZ_LT906621.1|WP_104877815.1|275497_276046_+|hypoxanthine-phosphoribosyltransferase
MNNDIERILFDEEQIQTRVAELAAQITNDYQGKRPVIVSVLTGAVLFTVDLIKKIDLYAEMDFVDVSSYYGGTASSGTVKLLHDLKRSIAGKDVIIVEDIVDTGRTLKFLMELLEGRGATSIKVCTFFDKPAGREVEVATDYVGFDVPHEFLVGYGLDYENYYRNLPYVGVLKPEVYQKNDD
>NZ_LT906621.1|WP_104877814.1|274131_275481_+|tRNA-lysidine(34)-synthetase-TilS
MKDPKLTMERSPLGSRFFSSSNTLVVAVSTGVDSMVLLDLLQNLPKLKRPRLIVAHVNHHLRTQSTAEEAFLRTYCRQRNLPLEVAQWAVAEHPAKGIEAAARRFRYAFFATVMDKYQAQAVATAHHQDDLAETVLMKLIRGGRIEQLGALRWQRPFASGELIRPLLALNKQDLRRYAKDHHLTWFEDETNRDLTLFRNRVRHHYLPSLSVENPRLVTALASDAEQINDLLSLANERLGELDATLRTERGFSLAAFRRLSESTQRSYLRYYLTKRGVATIKEEQLHQLVTGLGDQTRPPQSFQLPNQWCLVKGYREAFLKKAGQMAQEGESEGEFVVELGQWYRLRAGGTFSVTRQPDQGSVTTVWLTNNQFPLTCRPVQAGDRLLLKGGTHQRVRRVLIDQKVPRDLRANQRVIVDALGQVVWLVGVKVAWFDRRPGALPVALCQREQ
>NZ_LT906621.1|WP_057195299.1|273625_274132_+|RNA-binding-protein-S1
MALEEGAKVSGTVSGITNFGAFIDLADNKTGLVHISQVSDKFIKDIHDVLTVGDKVMVKVMKIEGNGKIALSMKQATSTEPAKRDHHDQQPSERLSHGHDDRQNRHHEPRGFSRPARSFSGRGNFGHHKPSGDFNDMLSSYLKESESRLSNLKRQTDGKRGGRGGRRS
>NZ_LT906621.1|WP_003686487.1|273139_273496_+|septum-formation-initiator-family-protein
MQKRHHRIAALNTIYARRIAENRRYRYRVHVRRAKIMYSIILVVALILGFQLWQSKQTLAKVNQNIDQQRTVLKQKQATGKKLTKQISLLHNQDYLEQLIRSKYNYSKTGETIYNFAD
>NZ_LT906621.1|WP_012390804.1|272778_273051_+|RNA-binding-S4-domain-containing-protein
MRLDKFLKVSRIIKRRAIAKKIADQGRIMINDKVAKSSSDVRVGDVLTIEFGNKTEKVQVNQLVETTKKDEAAGMYEILEESYAEDFGKE
>NZ_LT906621.1|WP_104877813.1|269239_272779_+|transcription-repair-coupling-factor
MKLTELAKQQPAFSKIKEVIDSGQRQLITGVSGSAKTLLLAALQGELPHPQLVVCDSLYHMQELVADLENLLGEDQVFAFPVEEVLATEVATASPDYRLQRVQALNTLLADQAAVVVTDAAGLRRRLPKPGDFQAATLTVEVGGELDPTTVGTQLMAMGYQRQKMALKPGDFAMRGSIVDIYALNTAHPVRIDLFDTEVDSLRYFDAESQRSVENIRAVTILPATDFIAPPAKLAQLKGGLQDDYHHLAQTADEEERQVLFGLFDPVISALDAGQLPVEMLEYADRVYEQSASLLDYLPAESNLVLDDWGRIKESAKRITEQETAWLMDKVAAKRRVRGATLDNGVMETLPKRPGPQTYLALFQKGLGQVKLAQISDLATREMQRFFSQLDLLKGELKRWQSQGATVVIMANSPERRNQVATTLADFGVAVVQTAPDQLMEHQVQLVAATLANGFEMPPANLVVITEAEMFKQVKNSRPRAQKLANAERIKSYTDLKPGDYVVHVNHGIGLFTGIKTMEVDGVHQDYMVLDYRDNAQIFVPVTQLNLVQKYVSAESKTPRLNRLGGVEWAKTKRRVAAKIEDIADDLVDLYAKRETEKGFAFPKDDYLQEKFDDEFPYAETKDQLQSIQEIKADMERPRPMDRLLVGDVGYGKTEVALRAIFKAVAGGKQVAFLVPTTILAQQHYDTMKARFEGFPVTIALMSRFKTAKELKETDRGLLNGEIDIVVGTHRILSKDVQFKDLGLLIVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMMGVRDLSVLETPPTGRYPIQTYVLEQNGAVIRDGILREMQRGGQVYYLHNRVHDIERVVAQLAELVPEARIGYIHGQMSENELEGVLYDFIRGEYDVLVTTSIIETGVDIANVNTLFVEDADRLGLAQLYQIRGRIGRSNRVAYAYFMYQENKVLTEQGEKRLAAIRDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTEMLADAVATKQGKKRPVKSNAEVELGVEAYLPSTYVDDQRQKIELYKQIRRAKSEEELTELAGDLIDRFGDYQTPVANLLTIGTIKLYADQAMLSEIERKRDNIYVNFTVVGSKKINAPQIIQALAKTRFKATMDEKEDGAISLRLVIQPKMTEQDWLNQLLALTRELGQRVQEANNEQEGETK
>NZ_LT906621.1|WP_104877817.1|289647_290520_+|SDR-family-oxidoreductase
MSDEHGPKSQEPKKGYLQKDEDAYLSEQPKLEADSYAPGQSLKNKIAVITGGDSGIGAATAILFAKEGAQVVLVHYESDADAERTAQRISEVGKEPVVFDTDIGDEGAVAELASKITEKFPKIDILVNNAGEQHVHEHLQDITAAEFTRTFQTNVLGMFMLTKALFMSLSQNAAIINTASITAYAGSPTLIDYSASKGAIVSFTRSLSQNKDVLERGIRVNAVAPGPIWTPLIPSTFNEDQLKTWGKTTPMGRAGQPYEVAPAYLYLASGASQYVTGQTVHVNGGKIING
>NZ_LT906621.1|WP_068805819.1|291214_291574_-|hypothetical-protein
MIIALAFVGLLLVGVQWLPVIVTGCLFLFGIGGGYFQPANISTIMQSGSTSNQGTIGSLQRMIQNIAIANGTAIGSTLINLTAPNLPPGIQVTWYLALFVVAIIVIAGISINYLHPEKA
>NZ_LT906621.1|WP_104877778.1|291901_292834_-|IS30-family-transposase
MSHILTLSDRTVIQTLLKVGYSQKQIAEEVGVAPSTINYELKRCPKGYYDADQAQEDCEKKLTHRGRKTLLTEHLREFVRGIILEQRWSFEVIAHILQMPFKTLYNWLDKGWLDIKREVLPDHGVRYRKSHDGRGQYTRGAKFINQRPDEANLRQEIGHFEVDTILSGKTRGEVLATFTDRKSRLMIIRRLPGRDSKAMTKAILELNEELCGLIKSITSDHGKEFAGFKEIEACGIAHYFAHPYAPHERGTNERLNRELRLHIPKNQSIESVTDEELTMISKYLNWRPRKCLGWKTSLQVFFGDLSEKFD
>NZ_LT906621.1|WP_104877819.1|293050_294613_+|hypothetical-protein
MRSSKRTNFKYYCLFLINTFVIYFFEVKNGIICSWDLQFHLNRIEELSQSIYSGHLLSSNGSFAFCQIGLLVNKFYPYLFLYPFALLRGLINPVLAYNICLISITILSFIISYRAITYVSRSSLSGFFFSIIYNNSGYILLQITQRGDIAEYIALALLPLLLEGFIGLIDNDNSLKWLWLPIIFILLTYDHLLSTILFMLFMIIMALFYWHEFRSKLIKLIISMGIVIVATLPVSLQIILTTHQNRIITPIVPDTLQNEALKPSDLFLNSLNNNVPGPLSEVNVGIVVLLCVIFSIWTLKQSSKLGRQLGILGVVFLFLSTNLFPWFIFQHTIMHVLQFPWRFLGIATFCIAYAISVALQNVRGRNIAMIFFILINMVTFNYMHTFCHRNNQVIDYHSVKQYNNYATEAAYTDYMPYQTLHGINKATNFRKASDIQRHIALINGKRIRLSNRQIHPEYDRISYRLTNLIPNKKNQVTLPLLNYGKNYSKDGIKVQQSSKGITTIIFVPSQPQQHITIYLR
>NZ_LT906621.1|WP_104877820.1|294707_294896_+|hypothetical-protein
MEEKHDIVAPVFKAKGKPVSKAKISPRPVVKMRAGNIQLTIFKGTNPSLAAEVVKAVVHYAH
>NZ_LT906621.1|WP_104877821.1|294885_295242_+|IS66-family-insertion-sequence-element-accessory-protein-TnpB
MLINWHDPDHVYLVFGKTDLRKGIDRLAMVIAENYGLELYDNSLFLFCGSRNDRFKGLLWDGEGFILLYKRFENGHLSWPRYSSEAKELSARQLDWLLKGLNPLPVRRIKAAQPGTFY
>NZ_LT906621.1|WP_104877822.1|295243_295465_-|helix-turn-helix-domain-containing-protein
MSTTILSFQNRVVIETLHNEGRSLRYIANYLGFSKTTIFNELHRLNGEYQAELVQTDFERSVIISKSNDFKQR
>NZ_LT906621.1|WP_104877823.1|295641_300078_+|KxYKxGKxW-signal-peptide-domain-containing-protein
MEIKKHFKMYKSGKQWCVATLATLAITTGGILSTSTAHADITSAVPSSAVEAVSTNLSANNEAVSASSSANSEAADVSSSSTSNASSSQGSASAEKATTVNVATGTNTSASSAAATAESSNTSSSATTTNDDSQPIREVKAAVSNTTNARFEAKDGKVYYYDAENHMYQNQWYENWGNKYYFGADGARITSTTHDIDGATYYFDNQGIMKSDYFLNQDGKVYYFDKDGKEYKDQFYSNWGNMYYFGKDGARYTNQYYSNWGHTYYFGEGGVRYTDRFYSNDGKLYYFDKKGIRLTNQWYQNWGNKYYFGADGARITSTTHDIDGATYYFDNQGIMKSDYFLNQDGKVYYFDKDGKEYKDQFYSNWGNMYYFGKDGARYTNQYYSNWGHTYYFGEGGVRYTDRFYSNDGKLYYFDKKGIRLTNQWYQNWGNKYYFGADGARITSTTHDIDGATYYFDNQGIMKSDYFLNQDGKVYYFDKDGKEYKDQFYSNWGNMYYFGKDGARYTNQYYSNWGHTYYFGEGGVRYTDRFYSNDGKLYYFDKKGIRLTNQWYQNWGNEYYFGDDGAALTGLHVINGKNYNFASDGQLLGNLYGKIVNGKLSIYDATSNKLLKTLDSGDWENLAYSFDSSSINNTDGYLSYAGWYRPYGTSQDGKTWYKTTASDWRPLLMYTWPSKDVEAKFIKYFVDNGYTNTDYGLTKDNVTNLSQDTDTQTLNKYARNLRFVIEKSIAANKSTGPLANDINKFMLTIPELSAKSELPVEYSNGYVPDVSGSIDNNQLIFINNNSDNQAKGNTSYADSNYRLMNRTINNQTNNDNSDQSPELLVGNDIDNSNPAVQAENLNWEYFLLNYGKLMKYNADGNFDGFRVDAADNIDADVLDQLGQLVNDMYHTKGNQENANNHLVYNEGYHSGAAQMLDGKNNPELYMDAGYFYTLENVLGRNADKRDNINNLVTNSIVNRANDITENTATPNWSFVTNHDQRKNVINQIIIDNHPGVPDIMNSSYKPEYAQEAWDEFYADQAKTDKQYAQYNLPAQYALLLSNRDTVPQVYYGDLYNETDQYMNTKSMYYDAITTLMKARRTFVNGGQTMTKVNDNLITSVRYGKGVADASSNGTDPLSRTTGMAVIVGNNPSMSEQVVAINMGLAHANEQYRNLIDSTADGLTYNSNGSVNPSVLTTDSKGILRVTVKGYSNPYVSGYLSVWVPLINGTQNARTSAQEVRNVPGKVFTSNAALDSHMIYEDFSLFQPEPTTVNEHAYNVIKDNAALFNQLGITDFWMAPSYTPFNTSRYNEGYAMTDRYNLGTADNPTKYGSGEELSNAIAALHQAGLKVQEDLVMNQMIGFSTQEAVTVTRVDRDAKQLSVDGQTFADQIYFGYTRGGGQGQKDYGGKYLAELKQKYPDLFTTKAASTGVAPDPNTRITEWSAKYENGTSLQNVGIGLAVKIPNGYYAYLNDGNNKAFNTTLPETMSSADYYANIEDD
>NZ_LT906621.1|WP_104877824.1|301473_303699_+|SEC10/PgrA-surface-exclusion-domain-containing-protein
MNKKKMIRLTALVGVATATGVVAEANQAHAATTTTTETTNQTTNASVESTQAAVDAAQSAFDTAQTSVDNAQANVTSASNNVTSASAILSSAIANKEVATSENIASATSAVSSQAVVVASASQAVSEQAGVVSAAASVQASAQAEATSASASLSSASANVASATSALSAAEAALTSDQSTAANNLSAAESAASSASAAVSSDQAAVDNAQAAVASAQAIVDAVAEVQSSDVINMSAAYITALKNYLANPSSANAAALQEVAKGADYVKELQQKFKSDASLDVVDPSDPAVQEALSVYAVNLINHLRNQYGLTTAFGASANANVAALDFVKKYYDDKNWNIFGTTGSDGQGHNKNGLDAYAVQLNTSIAEDAGSGLTTWVNGKATMATTTLHNLLYAVYSDIATMLFDDGGTNNWSHAQSIFEDGTILGTDGFNNVYLGVAFDKYGYAHYELYNATEGNRLGNNAYSLDVQTAAQTLLTNAQATLASAKASLQRMTTNLMVAKAAVVAAQDQLAALENSSASDSAAVTAARTQLESAKTSYQTALATYQQKEAALEKANDELANVQASLEAAQATLATAKAKLAELEETVANLTNADQLLAAAQAAYEQAVANLTVATGNLEAAQVDLAKAEAQLALAEEAVEQAEARAEIATQVDQQLNGSNANDRQSAGQDATSLKTNGRSLTATVATASAANPKRGADQGRLPQTGADNQEASAMALVGLGMLGMATGLYGYKKKKLTK
>NZ_LT906621.1|WP_104877825.1|303931_305428_+|peptide-MFS-transporter
MNKQKNTDTAFFGQPRGLSTLFFTEMWERFSYYGMRAILLFYMYFAVTKGGLGMDQTTAASIMSIYGSLVYLSGVVGGWLSDRVWGSRKTVFYGGILIMFGHIALSLPFGAPALYASILLIVCGTGLLKPNVSEMVGSLYSEDDKRRDAGFSMFVFGINLGAAVAPWAVPWAASGFGLNLFGSEQNFHAGFSLAAIGMFFGLLQYYFDGKKYLSKDSLYPDDPIDKESLRPIINWTIIGLVALAVILGLMAAMGQLNVTNVINLITFVAIILPIIYFIMMISSKKVTKVERSRVIAYVPLFVAAAIFWGIEESGSVVLALFAEQRTVLHIGGWYFAAANFQTLNPLFIMILTPFFVWLWDRWKNQPSAPGKFTAGLIIAGLSYVWMAIPGMLYGTDGRVSPFWLIGSWFIVEIAEMLISPIGLSVTTKLAPKAFKSQMMSMWFLANSAGQAVNAQIVKYYSSATEVPYFLAVGLVSIVFGIILFFFIKRIHGLMEGVD

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Crispr_ID: NZ_LT906621_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906621_2

848471-849827

TypeII

Consensus_repeat	Method
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	PILER-CR
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CRISPRCasFinder
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CRT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	PILER-CR

20 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_LT906621_2

>merge|NZ_LT906621|2|848471-849827|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACGTTTTGTTTTGCCAATAGCAACATCGGCCGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACCGGCCGCAACTCACCATTAAAGTTGATTGTGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACTACAAGACTAACGATTGGGTCGGTCTTAGCGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACATCAAGAAGGGCCCGTCATATATGGTCCGGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACAAACTAATCATGTTAGGCGAAACTAGGGGGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACAGTTCTCCGAATCCGTCTTCATTCTCCGTTGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACATAATTTCTGCACATAGCATAAGCACCATCGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACCAAGAAGGTTAAGAATTCAGCTGAAAACGGGTCTTGGATGAGTGTCATATCAGTAGTTCCGAGTACCCAAAGGTCATTGTTAGTGGTTTCCGTTTGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACTTTGGTTACGACGCTTGGGGTGCAACGGTGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACGGCGCCAAGTTTGTCTTTCCACGTCTTGAGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACCCTTCATTTAGCAAGATATTGAAAAACCATGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACAGACATCTTAGGCGATGCAACGGTCATCACGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACCCTGTTGATTCTTGATTGCTATCAGGGCGCGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACAAAAGCGGCAATTGTCGCATTAGGAGGTAGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACTTTACAACGCCAGTGATATTGCGGTTGATCGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACTTCACAATTTACTCGACTAGCATCCGCTTAGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACCCAACAAGTATCATAGGAATAACGCGGCTAGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACTCCTGTTTTGGCTAGTTCTCAAAACTTATATGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACAATTGGAAAGTTGGTTTCGAAGATTCCAGGGTCTTGGATGAGTGTCAGATCAGGTCAAGTCCAAAA

>NZ_LT906621|2|1|848471-849430|PILER-CR
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	GTTTTGTTTTGCCAATAGCAACATCGGCCG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CGGCCGCAACTCACCATTAAAGTTGATTGT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TACAAGACTAACGATTGGGTCGGTCTTAGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATCAAGAAGGGCCCGTCATATATGGTCCGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AAACTAATCATGTTAGGCGAAACTAGGGGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGTTCTCCGAATCCGTCTTCATTCTCCGTT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATAATTTCTGCACATAGCATAAGCACCATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CAAGAAGGTTAAGAATTCAGCTGAAAACGG
GTCTTGGATGAGTGTCATATCAGTAGTTCCGAGTAC	CCAAAGGTCATTGTTAGTGGTTTCCGTTTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTGGTTACGACGCTTGGGGTGCAACGGTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	GGCGCCAAGTTTGTCTTTCCACGTCTTGAG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTTCATTTAGCAAGATATTGAAAAACCAT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGACATCTTAGGCGATGCAACGGTCATCAC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTGTTGATTCTTGATTGCTATCAGGGCGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACAAAAGCGGCAATTGTCGCATTAGGAGGTAGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTACAACGCCAGTGATATTGCGGTTGATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTCACAATTTACTCGACTAGCATCCGCTTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCAACAAGTATCATAGGAATAACGCGGCTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TCCTGTTTTGGCTAGTTCTCAAAACTTATAT


>NZ_LT906621|2|1|848471-849761|CRISPRCasFinder
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	GTTTTGTTTTGCCAATAGCAACATCGGCCG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CGGCCGCAACTCACCATTAAAGTTGATTGT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TACAAGACTAACGATTGGGTCGGTCTTAGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATCAAGAAGGGCCCGTCATATATGGTCCGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AAACTAATCATGTTAGGCGAAACTAGGGGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGTTCTCCGAATCCGTCTTCATTCTCCGTT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATAATTTCTGCACATAGCATAAGCACCATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CAAGAAGGTTAAGAATTCAGCTGAAAACGG
GTCTTGGATGAGTGTCATATCAGTAGTTCCGAGTAC	CCAAAGGTCATTGTTAGTGGTTTCCGTTTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTGGTTACGACGCTTGGGGTGCAACGGTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	GGCGCCAAGTTTGTCTTTCCACGTCTTGAG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTTCATTTAGCAAGATATTGAAAAACCAT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGACATCTTAGGCGATGCAACGGTCATCAC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTGTTGATTCTTGATTGCTATCAGGGCGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AAAAGCGGCAATTGTCGCATTAGGAGGTAG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTACAACGCCAGTGATATTGCGGTTGATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTCACAATTTACTCGACTAGCATCCGCTTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCAACAAGTATCATAGGAATAACGCGGCTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TCCTGTTTTGGCTAGTTCTCAAAACTTATAT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC

>NZ_LT906621|2|2|848471-849827|CRT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	GTTTTGTTTTGCCAATAGCAACATCGGCCG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CGGCCGCAACTCACCATTAAAGTTGATTGT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TACAAGACTAACGATTGGGTCGGTCTTAGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATCAAGAAGGGCCCGTCATATATGGTCCGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AAACTAATCATGTTAGGCGAAACTAGGGGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGTTCTCCGAATCCGTCTTCATTCTCCGTT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATAATTTCTGCACATAGCATAAGCACCATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CAAGAAGGTTAAGAATTCAGCTGAAAACGG
GTCTTGGATGAGTGTCATATCAGTAGTTCCGAGTAC	CCAAAGGTCATTGTTAGTGGTTTCCGTTTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTGGTTACGACGCTTGGGGTGCAACGGTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	GGCGCCAAGTTTGTCTTTCCACGTCTTGAG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTTCATTTAGCAAGATATTGAAAAACCAT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGACATCTTAGGCGATGCAACGGTCATCAC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTGTTGATTCTTGATTGCTATCAGGGCGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AAAAGCGGCAATTGTCGCATTAGGAGGTAG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTACAACGCCAGTGATATTGCGGTTGATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTCACAATTTACTCGACTAGCATCCGCTTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCAACAAGTATCATAGGAATAACGCGGCTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TCCTGTTTTGGCTAGTTCTCAAAACTTATAT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AATTGGAAAGTTGGTTTCGAAGATTCCAGG
GTCTTGGATGAGTGTCAGATCAGGTCAAGTCCAAAA

>NZ_LT906621|2|2|849461-849761|PILER-CR
	GTTTTGTTTTGCCAATAGCAACATCGGCCG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CGGCCGCAACTCACCATTAAAGTTGATTGT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TACAAGACTAACGATTGGGTCGGTCTTAGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATCAAGAAGGGCCCGTCATATATGGTCCGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AAACTAATCATGTTAGGCGAAACTAGGGGG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGTTCTCCGAATCCGTCTTCATTCTCCGTT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	ATAATTTCTGCACATAGCATAAGCACCATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CAAGAAGGTTAAGAATTCAGCTGAAAACGG
GTCTTGGATGAGTGTCATATCAGTAGTTCCGAGTAC	CCAAAGGTCATTGTTAGTGGTTTCCGTTTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTGGTTACGACGCTTGGGGTGCAACGGTG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	GGCGCCAAGTTTGTCTTTCCACGTCTTGAG
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTTCATTTAGCAAGATATTGAAAAACCAT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	AGACATCTTAGGCGATGCAACGGTCATCAC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCTGTTGATTCTTGATTGCTATCAGGGCGC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTACAAAAGCGGCAATTGTCGCATTAGGAGGTAGGTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTTACAACGCCAGTGATATTGCGGTTGATC
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TTCACAATTTACTCGACTAGCATCCGCTTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	CCAACAAGTATCATAGGAATAACGCGGCTA
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC	TCCTGTTTTGGCTAGTTCTCAAAACTTATAT
GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906621.1\|WP_021815992.1\|836088_836532_+\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|235075
NZ_LT906621.1\|WP_104878060.1\|842232_846378_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_LT906621.1\|WP_104878061.1\|846585_847491_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_LT906621.1\|WP_046025745.1\|847770_848442_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_LT906621.1\|WP_003681786.1\|860545_860983_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_LT906621.1\|WP_003681789.1\|857944_858286_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906621.1\|WP_104878064.1\|851374_853006_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274709
NZ_LT906621.1\|WP_104878065.1\|854361_855315_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_LT906621.1\|WP_104878069.1\|858301_860536_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_LT906621.1\|WP_057195251.1\|836546_837359_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574
NZ_LT906621.1\|WP_104878058.1\|838874_839660_-\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NZ_LT906621.1\|WP_104878062.1\|847468_847774_+\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_LT906621.1\|WP_104878067.1\|856173_857136_+\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NZ_LT906621.1\|WP_104878059.1\|840008_841976_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274774
NZ_LT906621.1\|WP_173677569.1\|855824_856118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906621.1\|WP_104878056.1\|837420_838062_-\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_LT906621.1\|WP_104878063.1\|849857_851078_-\|IS256-family-transposase	unknown	unknown	gnl\|CDD\|307151
NZ_LT906621.1\|WP_104878068.1\|857135_857885_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
NZ_LT906621.1\|WP_104878743.1\|853629_854175_+\|hypothetical-protein	unknown	unknown	unknown
NZ_LT906621.1\|WP_104878057.1\|838075_838873_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561

Protein	Function_ID	Function_description	E-value
NZ_LT906621.1\|WP_021815992.1\|836088_836532_+\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|235075	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional.	4.98724e-38
NZ_LT906621.1\|WP_104878060.1\|842232_846378_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	3.2442e-129
NZ_LT906621.1\|WP_104878061.1\|846585_847491_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	1.05184e-80
NZ_LT906621.1\|WP_046025745.1\|847770_848442_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	2.9478e-90
NZ_LT906621.1\|WP_003681786.1\|860545_860983_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	3.27289e-97
NZ_LT906621.1\|WP_104878064.1\|851374_853006_+\|hypothetical-protein	gnl\|CDD\|274709	TIGR03663, TIGR03663, TIGR03663 family protein. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.	2.38151e-05
NZ_LT906621.1\|WP_104878065.1\|854361_855315_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	3.62932e-180
NZ_LT906621.1\|WP_104878069.1\|858301_860536_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
NZ_LT906621.1\|WP_057195251.1\|836546_837359_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	1.23967e-90
NZ_LT906621.1\|WP_104878058.1\|838874_839660_-\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	1.10926e-94
NZ_LT906621.1\|WP_104878062.1\|847468_847774_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.45042e-27
NZ_LT906621.1\|WP_104878067.1\|856173_857136_+\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	7.50038e-101
NZ_LT906621.1\|WP_104878059.1\|840008_841976_+\|hypothetical-protein	gnl\|CDD\|274774	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.	3.16207e-17
NZ_LT906621.1\|WP_104878056.1\|837420_838062_-\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.92369e-70
NZ_LT906621.1\|WP_104878063.1\|849857_851078_-\|IS256-family-transposase	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	6.97434e-128
NZ_LT906621.1\|WP_104878068.1\|857135_857885_+\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	1.20964e-73
NZ_LT906621.1\|WP_104878057.1\|838075_838873_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.13343e-122

>NZ_LT906621.1|WP_046025745.1|847770_848442_+|type-II-A-CRISPR-associated-protein-Csn2
MKLQYHGHQPIEMTPGKVVILQIENPSVNTELIQGLQGYNDCLRMIDDEYQELNLSKVMKWEGDLVLNPTKLDSYQTALDKMIVKNLSIQKRDRMNDLARGVFSEMQDSLFEFDLPLEVRYDESLLRLYKYAKIKYLTQVIRQPYGIIETDLKLHLELKDCQVLGYCNVANYLLPEQIQEFATLVEKTELAVLLVEFSEKRETLQQLKQDIYRIDRDFVDWHE
>NZ_LT906621.1|WP_104878062.1|847468_847774_+|CRISPR-associated-endonuclease-Cas2
MRLMVMFDLPTDTSQQRKQYRQFRKKLLNEGFIMIQYSVYVRVCTTRSAAEFLERRLKNYLPAQGIIQSLMLTEKQYSDMHFLLGDEIEEVRNSSKRTIVL
>NZ_LT906621.1|WP_104878061.1|846585_847491_+|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSIIIGQHAKITHSAHMMVVQTKDGINEIPMDDIAKVLVETTQAMISSDFMSACLQRNIKVIFVDRKYQPIGETVGYQPVARDYELLERQFLWPLDRREQLWTRIAHAKIESQIKVARLNGCPVQELESELEAIEVNDISNREAVVARKYFPLLFGKDFSRRQENQYNAALDYGCAVLLAETNQSITENGYLMELGIHHQNRENRFNLGSDLMEPFRPVIDYWVTGQKFAEFNRQVRVGLVDAMHTVIKYNGTEMLTQNAVRQYVRECLDYLSCERDEIEVKVEFKDEVPNHALDGHV
>NZ_LT906621.1|WP_104878060.1|842232_846378_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNYVKEYHIGLDIGTSSIGWAVTDSQFKLMRIKGKTAIGVRLFEEGKTAAERRTFRTTRRRLKRRKWRLHYLDEIFAPHLQEVDENFLRRLKQSNIHPEDPTKNQAFIGKLLFPDLLKKNERGYPTLIKMRDELPVEQRAHYPVMNIYKLREAMINEDRQFDLREVYLAVHHIVKYRGHFLNNASVDKFKVGRIDFDKSFNVLNEAYEELQNGEGSFTIEPSKVEKIGQLLLDTKMRKLDRQKAVAKLLEVKVADKEETKRNKQIATAMSKLVLGYKADFATVAMANGNEWKIDLSSETSEDEIEKFREELSDAQNDILTEITSLFSQIMLNEIVPNGMSISESMMDRYWTHERQLAEVKEYLATQPASARKEFDQVYNKYIGQAPKERGFDLEKGLKKILSKKENWKEIDELLKAGDFLPKQRTSANGVIPHQMHQQELDRIIEKQAKYYPWLATENPATGERDRHQAKYELDQLVSFRIPYYVGPLVTPEVQKATSGAKFAWAKRKEDGEITPWNLWDKIDRAESAEAFIKRMTVKDTYLLNEDVLPANSLLYQKYNVLNELNNVRVNGRRLSVGIKQDIYTELFKKKKTVKASDVASLVMAKTRGVNKPSVEGLSDPKKFNSNLATYLDLKSIVGDKVDDNRYQTDLENIIEWRSVFEDGEIFADKLTEVEWLTDEQRSALVKKRYKGWGRLSKKLLTGIVDENGQRIIDLMWNTDQNFKEIVDQPVFKEQIDQLNQKAITNDGMTLRERVESVLDDAYTSPQNKKAIWQVVRVVEDIVKAVGNAPKSISIEFARNEGNKGEITRSRRTQLQKLFEDQAHELVKDTSLTEELEKAPDLSDRYYFYFTQGGKDMYTGDPINFDEISTKYDIDHILPQSFVKDNSLDNRVLTSRKENNKKSDQVPAKLYAAKMKPYWNQLLKQGLITQRKFENLTKDVDQNIKYRSLGFVKRQLVETRQVIKLTANILGSMYQEAGTEIIETRAGLTKQLREEFDLPKVREVNDYHHAVDAYLTTFAGQYLNRRYPKLRSFFVYGEYMKFKHGSDLKLRNFNFFHELMEGDKSQGKVVDQQTGELITTRDEVAKSFDRLLNMKYMLVSKEVHDRSDQLYGATIVTAKESGKLTSPIEIKKNRLVDLYGAYTNGTSAFMTIIKFTGNKPKYKVIGIPTTSAASLKRAGKPGSESYNQELHRIIKSNPKVKKGFEIVVPHVSYGQLIVDGDCKFTLASPTVQHPATQLVLSKKSLETISSGYKILKDKPAIANERLIRVFDEVVGQMNRYFTIFDQRSNRQKVADARDKFLSLPTESKYEGAKKVQVGKTEVITNLLMGLHANATQGDLKVLGLATFGFFQSTTGLSLSEDTMIVYQSPTGLFERRICLKDI
>NZ_LT906621.1|WP_104878059.1|840008_841976_+|hypothetical-protein
MGPVTGARRVSRGLAWILVACLVGGLVSNFTFSQNGVTSLVLVPLTLLGWWGLPKLAPVIDRLTNRQVALLVGVGMAVMVLLQMAVLKWLPVTVYHDPLRVLDQATRMAIGHTSWKITYFWRYPQNVPIAYLLSLWLKLTMALGMGVNRGVHLLSMLLLDGMVLLGIDTAWRVSKKKHLVLGILAFGVLTPFAYTYYLQVFYTDLPVMFVLLYLLRTLVLWRHRNWWQKGLSGALLVLLAMLGQLTKANMIVIIPAMLLTALILWGRHRFKQSQLLVPMLLITLGVALSFPLSSTLDKAAHFTRQTDYEFPLTQWVTMGLNEKSNGVYNTKDAVANVKLKTKAARNAHNLKVIKQRLAKQNVGLIKLWLAKLMVLTNAGNIFHWYNGGMQEAPRSYLKAAPAFTGLVAISYQLATCLLFGFVIKRLLATRMTLKSANGQVALLVILTALGYLAFHVLLWEVEERYGEVLVPLSWLLVTLLPAADDQPITLKQVGSVFALGTVAVLVGAMTNLGVNSSGQTVTVAAQRSQLSTQYGAKPVDLAPGKQISQVVKINGAASDVSVQIHAKSHVTVTLVELKTGDEYVFKRHADEYDYQGNVPAGTYQFVIKNQTAVDQDVDIVHVPHYRMAPYPMDDQGTVHWDTSLIYWFRDVRSAN
>NZ_LT906621.1|WP_104878058.1|838874_839660_-|hydroxyethylthiazole-kinase
MQNAIATIKETNPIVLTVANNVTPADVANGLNALGASPMMSQTPEEADDMVNIAQAAAINLGTLNPHQRGEMEAVMEAAKKYHKPTVLDPVACGATMYRLRVVTELLHQYHFTVIRGNAGEIATLAGVDWQSHGIDAGEGNTDLEKVARLAAEKLGSVIVLSGEVDIVTDGTRLARLPYGSPAFKTHVGTGDMLSSLIGAFLATNDDAFDAAVDAVTTFTLCGQAVEDQRPGNWYPGLLNNLDAVTDQQLAAWQEAFGKEA
>NZ_LT906621.1|WP_104878057.1|838075_838873_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTNEFPQALTIAGSDSGGGAGIQADLKTIQMRHVFATTVVVAVTAQNTLGVQDALALPTEMIDAQFASLADDFKIRAAKTGMLADVPTVQAVVRNLKQYDFGPLTVDPVMIAKGGAKLLADEAITTVKDELLPLATLVTPNLPEAEALTGLKAERPADMVKIGQALQKLGPKNVLVKGGHLGGDQAASDFVLMEDGTSFWMTSPRIDTVRTHGTGDTISACITAELAKGVGLEQAIRTAKGYVEATIRDTIQVGHGHGPLNHWAL
>NZ_LT906621.1|WP_104878056.1|837420_838062_-|thiamine-phosphate-synthase
MLFKDEMLRCYLIGGSQDTHHDPDEFLTKVEAAMQAGITAFQYREKGTSTLSKAETLALGQQVRELATKYGVPLFVDDDLELAAAIKADGIHVGQKDQRIEEVLAAVGDQLMVGYSCNTAPQVAHANQLNVDYIGTGPVFPTISKDDAGSALGVDGLADFVEQSAHPVVAIGGISMDNAGATLTSGCAGLSMISMVLGADDVAGTVKKILELY
>NZ_LT906621.1|WP_057195251.1|836546_837359_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTQYVQALTIAGHDSDGSAGMPADLHAFFIDGVYGQGLLTAAVSGNSYGITQQQIMPTSFIKEQFKVLADDFAIKAAKTGMLANDDVINAVADSYDEAKFGPLVVDPVIITKHGVMLLEQSAYELFRERIIPLATVITPNFYEAQKLTELELKDDDQVQEAAAKLHALGAKNVVIKGQHIEGQTTPVRDFVSLADGKIFWLEEEYVPTDRVNGTGDTFSAIIAAELAKGHSVEAGVRLAKKVVHEAIANEIEVGHQFGPINHWAGQGAAN
>NZ_LT906621.1|WP_021815992.1|836088_836532_+|phosphate-starvation-inducible-protein-PsiE
MVIEVSSQEWFQKIAHLLELVALVAVGLLGLALIVQLGMELLAVVKLALAPVSDPGFYDFLNEVTSFFIIFEFIVMVIEALRNHGHISITMLMGLGLTALLRHLLAASNSNGIETMVEVGAIVLLTVGLAIYRRFIHDPDENFEKRI
>NZ_LT906621.1|WP_104878063.1|849857_851078_-|IS256-family-transposase
MPKVELNLGDDELKELLLGDRDKAMQSIMAKILDEILKSEATEQIKAKAYERSDERTNSRNGYRVRQLTTRVGSLELHVPKLRHGNFSTQLFKRYQRSEQAFDLALMEMVIQGVSTRKVAEITKKLCGTTFSKSTVSALCSNLDDQVLDFNRRPLTQKYAFVYADAILFKVHRGHVVTSNSLLVAIGIDPSGRREVLGFDIGDSESKAAWMDFFSELKQRGLTNVDMFVSDAHCGLKDAITTQFQGSLWQRCQFHFSNDCTSILALKDRKEVANRLKDLFNAPTYDQAIERRDQLVKDWQTEFPKVVKKLENSFDELMVIYQLPEELRKRLRTNNTIERVNQEIRRRDRVIRIFPNDLSVLRLMGALLIEQNEKWAAGPRYLNMTVYHGIEKDDNSEEAGMLKLVK
>NZ_LT906621.1|WP_104878064.1|851374_853006_+|hypothetical-protein
MFVATLTLAALYVAFLVVIAGRPALAKRPRWFKVILALLLLVAIIARLYRYNAAMGIDYDEAMGGLNAWSLAKWGIDYFTLASHPVYLYAWGSGMNLLYPLLASPFVKFFGLSITVYRFPMVLLGVLSLLYLTAAMLKARWSNWRLVLVLAALALSPGMLNTSRWAVESNLFPALLTMVMATLLWWVTTKRARYFYLTNLLLVLGAYTYANNWLFLATFILGFWLIAWRRHLVGVRQLGLGFLIDFALAWPLALFLWVNYVSHRQLYVLRLTITRLAASRGASQLVVGHGQGLGAVIKNLGQTVAVLFTGYDGYLKNGLPGFGILTPVMVVLAIVGALLVFKAKPRTDFDALMLMMLGANLPTVLLISPNHTHLNALTVPALYFAGMALAKLSRVNWRVAGLVVIVVLFGTYAYTYLGPAHTALAAGQNETPLELQTMLTKADDNGAPIYLATNHQQAGGMYTVALFNHPVKPANFKQEAVKSGGGEFIHYYCYGRYHISAQLPKSLPTHAVLIVRRGASLQSAKQAGYHLVKAGCYYQYLER
>NZ_LT906621.1|WP_104878743.1|853629_854175_+|hypothetical-protein
MTVYAMNLPGFLAGRSLLTPLTIYAGQTSDYKELALNIANFPKFLQLAFPAAALDHYELLKRGLMVLTCLILLAGFWYLRRLDLTPQRFLMVATWSFWTCTMFLPSMHDRYSYFVMVMLALVALLDCRMIGVALVSIGISTVLYLRYLLNADAAIDLLPLAIIQIINYCGFTVGTFLHSFR
>NZ_LT906621.1|WP_104878065.1|854361_855315_-|L-lactate-dehydrogenase
MSKTHQKVVLIGDGAVGSSYAFAMVQQGLAQEFAIIDLNKKRTEGDALDLEDATPFTAPKLVYGADYDTCKDADLVVITAGAPQKPGETRLDLVDKNLKIIRSVVEPVVKSGFQGIFLVAANPVDILTYAVQKFSGFPRNKVVGSGTSLDSARLRVGLSKLFNVSPVDVNANMMAEHGDTEFAAFSSATIGGLPLYDLAEAKGVSKEELYKLEDDVRNKAYAIINSKGATFYGVATALMRISRAILRDENAVLPVGAPMSGEYGLKDIYIGTPAVINANGIAEVLEVPLDEREAKAMADSAKTLEEIAKNGMAKIQG
>NZ_LT906621.1|WP_173677569.1|855824_856118_+|hypothetical-protein
MREHDLTYKKEYIRPMMTPEHVYVFRFGKHRLNNRVIIRYSHTWTGRVKINEIDVRMHHQHHPRIFKTEDDMLAYLAHHLEKREAKEATRVHAGEEE
>NZ_LT906621.1|WP_104878067.1|856173_857136_+|50S-ribosomal-protein-L11-methyltransferase
MNWTAIVVETSTEAVDAVSYILTDTGATGVKIDDAADYQKLKPGKYGPYGEIVDPSTLPHREEGAAVTGYYPPTTFVPEKIADIRQRVAKLADFGLNPAPARVAAEEIDNQDWATAWQKYYHPVRVTRELTIVPQWEEYTPATADEKLLVLDPGMAFGTGTHPTTQLMLQALTIALRGGESMIDVGTGSGVLSIAAKQLGAGEVWAYDIDDVAVKSAEKNLALNPVAKDVHTGVNSLLDGIHTQVDLVVANILAEIILPLVPQAFENLKPGGKFLTSGIINTRFETVKKAIETQGFVVDETMRIKDWYGIIAHKPAPEEA
>NZ_LT906621.1|WP_104878068.1|857135_857885_+|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MQRYFVDQALTAHRRLNLPDDVSHHLITVMRAAAGTQVELVLADHHAYLATLLDPATAEVKVEQDLGGDSELPIEVTLACGLPKTKEKPELIVQKATELGAKRIIFFESARSVSHWNAQRQGKKVERLQKIANAAAEQSHRNQIPEVSYFKDLKSLLTAFSFDHRVVAWEESAKQGERAALATVFDQVTPGQSLLAIFGPEGGLTETEVETMTAAGVVACGLGPRILRTETAPLYLMAAVSYHFELAEH
>NZ_LT906621.1|WP_003681789.1|857944_858286_+|hypothetical-protein
MKSLKSLWQRADRRLWVLSILIGFVVTWLVNIVPFINKVERFAVFYLLLYGAFAIWTGFTLQNRRRCWQAFVFPVSFLLAAHLFGPKYSLYFAPAYLAVAYLAWSMVRANRNK
>NZ_LT906621.1|WP_104878069.1|858301_860536_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MSQTKELTHEDVKNMVAKYMNEEHVALVERAYHFAAVAHQGQVRKSGEPYIIHPIQVAGILAELKMDPETVCAGYMHDLVEDTGATLDDIKELFGPTIAMIVDGDTKISKIHYKSNKEQMAETHRKLLLAMSKDIRVMIVKLADRLHNMRTLKHLRPDKQRRISNETLEIYAPIADRLGISTIKWELEDLSLRYLNPQQYYRIVHLMNSRRDQRIDYISAAIKVVKTAIADLDLGPNVEIYGRPKHIYSVYRKMVTQHKRFSQIYDLLAIRVVVDSIKDCYAVLGAIHTSWTPMPGRFKDYIAMPKANGYQSLHTTVIGPEGRPLEIQIRTHQMHEVAEYGVAAHWAYKEGKTNGGDQASQDSKKLNVVKEILELRSESNGTDEFMQGIQSDVFADKVYAFTPKGDAIEMPKGAGPLDMAYQIHTEIGNHTTGSKVNGRIVPLNYEIKNGDIVDILTSSSSAGPSRDWMDLVSTRRARNKIRQFFRTHDREENVIEGRRIMEQQLRDAGYEPAELMVSDKEEEIAGKLHYKTADDMYAALGFGDIAPIGLRNRFTEDIRKHKEEEKQNAAQKAILEGHKTLEQEPPTRQKVAKSSEGVVVEGVDNLLTRLSHCCSPVPGDAIVGYITKGRGVSVHRADCPNIKAAEKSGQRVVSVYWANPAGDKTNYNADIEVEGYNRNGLLNDIIRAINNNTRYLTSINGRVDHNKMATISATVGVRNFQHLQLIMDSLKNLPDVYVVKRVIH
>NZ_LT906621.1|WP_003681786.1|860545_860983_+|D-tyrosyl-tRNA(Tyr)-deacylase
MRVVLQRVKEASVTIEGQVVGQIGQGYLLLVGFGPDDTEETLDYMVHKITNLRVFESEPGKMNLGLKDVDGAILSVSQFTLYADVKHGNRPGFSNAAKPSLAEPLYQRFNEKLAATGIPVATGQFGADMQVALVNDGPVTIWYEK

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Crispr_ID: NZ_LT906621_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_LT906621_3

1294238-1296954

TypeV,TypeI-E

Consensus_repeat	Method
GGATCACCCCCATATACATGGGGAGCAC	PILER-CR
GGATCACCCCCATATACATGGGGAGCAC	CRISPRCasFinder
GGATCACCCCCATATACATGGGGAGCAC	CRT
GGATCACCCCCATATACATGGGGAGCAC	PILER-CR

44 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_LT906621_3

>merge|NZ_LT906621|3|1294238-1296954|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GGATCACCCCCATATACATTGGGAGCACTGGCGTAGTTCCACTAGCTTAGTAGCGGACTTAGGATCACCCCCATATACATGGGGAGCACTCACCAGGTTGTGGCTGTTGGATTGCCCGGCTGGGATCACCCCCATATACATGGGGAGCACTCAACACAAACTTCACGGATAGCTCAAGACATGGGATCACCCCCATATACATGGGGAGCACGTGGCGACGTCACCTACTAGAGTTTCCATATTAGGATCACCCCCATATACATGGGGAGCACATGGCTTTCCTCTGAATACATAGAATCATGCAAGGATCACCCCCATATACATGGGGAGCACTTCATCTTCTAGTAGCTTTGGATAGCCTCTGTAGGATCACCCCCATATAATACATGGGGAGCACCAATAAAGCCGGCTAACTAAAAGCTGGTGAATAGGATCACCCCCATATACATGGGGAGCACAGTACTTGATTCCAACGGCAGAGCTGGGAGTCAGGATCACCCCCATATACATGGGGAGCACTTTTTGTTCAGCTTGTCAATCCCGATTGAGTAAGGATCACCCCCATATACATGGGGAGCACGAGGTGCATAGATTGAGCGAACCATATATTAAGGGATCACCCCCATATACATGGGGAGCACCCCGGAGTTGCTGTCGTTCATCTGCTTCATAAAGGATCACCCCCATATACATGGGGAGCACTTGATCTTAGTGGCGGCGGTTTGTGACCTCCAGGGATCACCCCCATATACATGGGGAGCACCAATCGCCAAGCAAACTGCTAGCGAGGCTACTAGGATCACCCCCATATACATGGGGAGCACTTTAAGTAAGCATATCCGTCCTGCCAAACAGTAGGATCACCCCCATATACATGGGGAGCACCTCAGATCGCTAGAAAGCGTCGCGGGCAAGCAAGGATCACCCCCATATACATGGGGAGCACTCGTAACGAGGTTCTTGACACGTGGATGATCCAGGATCACCCCCATATACATGGGGAGCACCTTTTGGCCTGATTCAATCCAGGCATCGTTTAAGGATCACCCCCATATACATGGGGAGCACGCAGGCGGTTTTGCTGCAACGTTCTCATTCCCGGGATCACCCCCATATACATGGGGAGCACATAAGTCTGAGTATCAGCCATGCTTAATCGGTAGGATCACCCCCATATACATGGGGAGCACTCAAATGCCTTCACCTCCGTTTCGTTCCAAGTGGGATCACCCCCATATACATGGGGAGCACCATATTGCTAAAACGATCGGTGATACAGACTCAGGGATCACCCCCATATACATGGGGAGCACTTAAACATCGATCCCACGACTGGAAACTGGATCAGGATCACCCCCATATACATGGGGAGCACTGGCGGGCGAGATCGCAAAGAATACGTCTAATGGGATCACCCCCATATACATGGGGAGCACGGGTAATTGAGGCAATCCCACAGTCAGATATGAGGATCACCCCCATATACATGGGGAGCACCGGTAAAGTCGTTCCATCCCGGCTCAAGACGAAGGATCACCCCCATATACATGGGGAGCACTTGATCCCATAGCCCATCAAGACCACGTCATAGGGATCACCCCCATATACATGGGGAGCACATTATTGTCATTATTAAGCTCCAGTACCAGTTGGGATCACCCCCATATACATGGGGAGCACAGTCCGATCGTGATGCCGAAGTGCTTGTAGATGGGATCACCCCCATATACATGGGGAGCACGTGTATTCCATATCCTTAGAATTTTGTTGCATGGGATCACCCCCATATACATGGGGAGCACATTCTAACGTAGTACTTGACTTCGTTGTGCCGGGGATCACCCCCATATACATGGGGAGCACCTGGTACTCAAGCAACGTAACGATTAACCTTGAGGATCACCCCCATATACATGGGGAGCACCACCACCAGTAACGTCGATAGCATCCACTTTGGGGATCACCCCCATATACATGGGGAGCACGCTGGCGGTTTGCACGGCAACGGTAGCGTTTGAGGATCACCCCCATATACATGGGGAGCACCCAGAAGTTCCCGTTTTGCGTTGGCGAAATCTGGGATCACCCCCATATACATGGGGAGCACGACAAGGTGACCAGCAGTCATCGCTAGATATGAGGATCACCCCCATATACATGGGGAGCACCAAGTGCCATGAGAGGTGGCAATAAATTCTATGGGATCACCCCCATATACATGGGGAGCACTGAGACGTTCGGCGCATGGAAACAGATTACTGGGGATCACCCCCATATACATGGGGAGCACCGTATTGCTCAAGATTAGCCACCTCCTTCTCTGGGATCACCCCCATATACATGGGGAGCACCGGCGTTCCCCGATGCATCAGTAGTGATTGAGGGGATCACCCCCATATACATGGGGAGCACTTTTAACGGCTAACCCGGCTGACATAGTGGCGAGGATCACCCCCATATACATGGGGAGCACGCTAACTACTTACCAAAGGTAGGGGTTGAATGGGGATCACCCCCATATACATGGGGAGCACCGATAGTAAATGTTTTGGGTGGTTGTCAACGTGGGATCACCCCCATATACATGGGGAGCACCAATTAATGCTGATTTGAAAGTTGGAGATATAAGGATCACCCCCATATACATGGGGAGCACTTCGTAATCGTAAGCGACTGATTAGTTGTCTGGGGATCACCCCCATATACATGGGGAGCAC

>NZ_LT906621|3|3|1294238-1294509|PILER-CR
GGATCACCCCCATATACATTGGGAGCAC	TGGCGTAGTTCCACTAGCTTAGTAGCGGACTTA
GGATCACCCCCATATACATGGGGAGCAC	TCACCAGGTTGTGGCTGTTGGATTGCCCGGCTG
GGATCACCCCCATATACATGGGGAGCAC	TCAACACAAACTTCACGGATAGCTCAAGACATG
GGATCACCCCCATATACATGGGGAGCAC	GTGGCGACGTCACCTACTAGAGTTTCCATATTA
GGATCACCCCCATATACATGGGGAGCACATGGCTTTCCTCTGAATACATAGAATCATGCAAGGATCACCCCCATATACATGGGGAGCACTTCATCTTCTAGTAGCTTTGGATAGCCTCTGTAGGATCACCCCCATATAATACATGGGGAGCACCAATAAAGCCGGCTAACTAAAAGCTGGTGAATAGGATCACCCCCATATACATGGGGAGCAC	AGTACTTGATTCCAACGGCAGAGCTGGGAGTCA
GGATCACCCCCATATACATGGGGAGCAC	TTTTTGTTCAGCTTGTCAATCCCGATTGAGTAA
GGATCACCCCCATATACATGGGGAGCAC	GAGGTGCATAGATTGAGCGAACCATATATTAAG
GGATCACCCCCATATACATGGGGAGCAC	CCCGGAGTTGCTGTCGTTCATCTGCTTCATAAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCTTAGTGGCGGCGGTTTGTGACCTCCAG
GGATCACCCCCATATACATGGGGAGCAC	CAATCGCCAAGCAAACTGCTAGCGAGGCTACTA
GGATCACCCCCATATACATGGGGAGCAC	TTTAAGTAAGCATATCCGTCCTGCCAAACAGTA
GGATCACCCCCATATACATGGGGAGCAC	CTCAGATCGCTAGAAAGCGTCGCGGGCAAGCAA
GGATCACCCCCATATACATGGGGAGCAC	TCGTAACGAGGTTCTTGACACGTGGATGATCCA
GGATCACCCCCATATACATGGGGAGCAC	CTTTTGGCCTGATTCAATCCAGGCATCGTTTAA
GGATCACCCCCATATACATGGGGAGCAC	GCAGGCGGTTTTGCTGCAACGTTCTCATTCCCG
GGATCACCCCCATATACATGGGGAGCAC	ATAAGTCTGAGTATCAGCCATGCTTAATCGGTA
GGATCACCCCCATATACATGGGGAGCAC	TCAAATGCCTTCACCTCCGTTTCGTTCCAAGTG
GGATCACCCCCATATACATGGGGAGCAC	CATATTGCTAAAACGATCGGTGATACAGACTCAG
GGATCACCCCCATATACATGGGGAGCAC	TTAAACATCGATCCCACGACTGGAAACTGGATCA
GGATCACCCCCATATACATGGGGAGCAC	TGGCGGGCGAGATCGCAAAGAATACGTCTAATG
GGATCACCCCCATATACATGGGGAGCAC	GGGTAATTGAGGCAATCCCACAGTCAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CGGTAAAGTCGTTCCATCCCGGCTCAAGACGAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCCCATAGCCCATCAAGACCACGTCATAG
GGATCACCCCCATATACATGGGGAGCAC	ATTATTGTCATTATTAAGCTCCAGTACCAGTTG
GGATCACCCCCATATACATGGGGAGCAC	AGTCCGATCGTGATGCCGAAGTGCTTGTAGATG
GGATCACCCCCATATACATGGGGAGCAC	GTGTATTCCATATCCTTAGAATTTTGTTGCATG
GGATCACCCCCATATACATGGGGAGCAC	ATTCTAACGTAGTACTTGACTTCGTTGTGCCGG
GGATCACCCCCATATACATGGGGAGCAC	CTGGTACTCAAGCAACGTAACGATTAACCTTGA
GGATCACCCCCATATACATGGGGAGCAC	CACCACCAGTAACGTCGATAGCATCCACTTTGG
GGATCACCCCCATATACATGGGGAGCAC	GCTGGCGGTTTGCACGGCAACGGTAGCGTTTGA
GGATCACCCCCATATACATGGGGAGCAC	CCAGAAGTTCCCGTTTTGCGTTGGCGAAATCTG
GGATCACCCCCATATACATGGGGAGCAC	GACAAGGTGACCAGCAGTCATCGCTAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CAAGTGCCATGAGAGGTGGCAATAAATTCTATG
GGATCACCCCCATATACATGGGGAGCAC	TGAGACGTTCGGCGCATGGAAACAGATTACTGG
GGATCACCCCCATATACATGGGGAGCAC	CGTATTGCTCAAGATTAGCCACCTCCTTCTCTG
GGATCACCCCCATATACATGGGGAGCAC	CGGCGTTCCCCGATGCATCAGTAGTGATTGAGG
GGATCACCCCCATATACATGGGGAGCAC	TTTTAACGGCTAACCCGGCTGACATAGTGGCGA
GGATCACCCCCATATACATGGGGAGCAC	GCTAACTACTTACCAAAGGTAGGGGTTGAATGG
GGATCACCCCCATATACATGGGGAGCAC	CGATAGTAAATGTTTTGGGTGGTTGTCAACGTG
GGATCACCCCCATATACATGGGGAGCAC	CAATTAATGCTGATTTGAAAGTTGGAGATATAA
GGATCACCCCCATATACATGGGGAGCAC	TTCGTAATCGTAAGCGACTGATTAGTTGTCTGG


>NZ_LT906621|3|2|1294238-1296954|CRISPRCasFinder
GGATCACCCCCATATACATTGGGAGCAC	TGGCGTAGTTCCACTAGCTTAGTAGCGGACTTA
GGATCACCCCCATATACATGGGGAGCAC	TCACCAGGTTGTGGCTGTTGGATTGCCCGGCTG
GGATCACCCCCATATACATGGGGAGCAC	TCAACACAAACTTCACGGATAGCTCAAGACATG
GGATCACCCCCATATACATGGGGAGCAC	GTGGCGACGTCACCTACTAGAGTTTCCATATTA
GGATCACCCCCATATACATGGGGAGCAC	ATGGCTTTCCTCTGAATACATAGAATCATGCAA
GGATCACCCCCATATACATGGGGAGCAC	TTCATCTTCTAGTAGCTTTGGATAGCCTCTGTA
GGATCACCCCCATATAATACATGGGGAG	CACCAATAAAGCCGGCTAACTAAAAGCTGGTGAATA
GGATCACCCCCATATACATGGGGAGCAC	AGTACTTGATTCCAACGGCAGAGCTGGGAGTCA
GGATCACCCCCATATACATGGGGAGCAC	TTTTTGTTCAGCTTGTCAATCCCGATTGAGTAA
GGATCACCCCCATATACATGGGGAGCAC	GAGGTGCATAGATTGAGCGAACCATATATTAAG
GGATCACCCCCATATACATGGGGAGCAC	CCCGGAGTTGCTGTCGTTCATCTGCTTCATAAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCTTAGTGGCGGCGGTTTGTGACCTCCAG
GGATCACCCCCATATACATGGGGAGCAC	CAATCGCCAAGCAAACTGCTAGCGAGGCTACTA
GGATCACCCCCATATACATGGGGAGCAC	TTTAAGTAAGCATATCCGTCCTGCCAAACAGTA
GGATCACCCCCATATACATGGGGAGCAC	CTCAGATCGCTAGAAAGCGTCGCGGGCAAGCAA
GGATCACCCCCATATACATGGGGAGCAC	TCGTAACGAGGTTCTTGACACGTGGATGATCCA
GGATCACCCCCATATACATGGGGAGCAC	CTTTTGGCCTGATTCAATCCAGGCATCGTTTAA
GGATCACCCCCATATACATGGGGAGCAC	GCAGGCGGTTTTGCTGCAACGTTCTCATTCCCG
GGATCACCCCCATATACATGGGGAGCAC	ATAAGTCTGAGTATCAGCCATGCTTAATCGGTA
GGATCACCCCCATATACATGGGGAGCAC	TCAAATGCCTTCACCTCCGTTTCGTTCCAAGTG
GGATCACCCCCATATACATGGGGAGCAC	CATATTGCTAAAACGATCGGTGATACAGACTCAG
GGATCACCCCCATATACATGGGGAGCAC	TTAAACATCGATCCCACGACTGGAAACTGGATCA
GGATCACCCCCATATACATGGGGAGCAC	TGGCGGGCGAGATCGCAAAGAATACGTCTAATG
GGATCACCCCCATATACATGGGGAGCAC	GGGTAATTGAGGCAATCCCACAGTCAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CGGTAAAGTCGTTCCATCCCGGCTCAAGACGAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCCCATAGCCCATCAAGACCACGTCATAG
GGATCACCCCCATATACATGGGGAGCAC	ATTATTGTCATTATTAAGCTCCAGTACCAGTTG
GGATCACCCCCATATACATGGGGAGCAC	AGTCCGATCGTGATGCCGAAGTGCTTGTAGATG
GGATCACCCCCATATACATGGGGAGCAC	GTGTATTCCATATCCTTAGAATTTTGTTGCATG
GGATCACCCCCATATACATGGGGAGCAC	ATTCTAACGTAGTACTTGACTTCGTTGTGCCGG
GGATCACCCCCATATACATGGGGAGCAC	CTGGTACTCAAGCAACGTAACGATTAACCTTGA
GGATCACCCCCATATACATGGGGAGCAC	CACCACCAGTAACGTCGATAGCATCCACTTTGG
GGATCACCCCCATATACATGGGGAGCAC	GCTGGCGGTTTGCACGGCAACGGTAGCGTTTGA
GGATCACCCCCATATACATGGGGAGCAC	CCAGAAGTTCCCGTTTTGCGTTGGCGAAATCTG
GGATCACCCCCATATACATGGGGAGCAC	GACAAGGTGACCAGCAGTCATCGCTAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CAAGTGCCATGAGAGGTGGCAATAAATTCTATG
GGATCACCCCCATATACATGGGGAGCAC	TGAGACGTTCGGCGCATGGAAACAGATTACTGG
GGATCACCCCCATATACATGGGGAGCAC	CGTATTGCTCAAGATTAGCCACCTCCTTCTCTG
GGATCACCCCCATATACATGGGGAGCAC	CGGCGTTCCCCGATGCATCAGTAGTGATTGAGG
GGATCACCCCCATATACATGGGGAGCAC	TTTTAACGGCTAACCCGGCTGACATAGTGGCGA
GGATCACCCCCATATACATGGGGAGCAC	GCTAACTACTTACCAAAGGTAGGGGTTGAATGG
GGATCACCCCCATATACATGGGGAGCAC	CGATAGTAAATGTTTTGGGTGGTTGTCAACGTG
GGATCACCCCCATATACATGGGGAGCAC	CAATTAATGCTGATTTGAAAGTTGGAGATATAA
GGATCACCCCCATATACATGGGGAGCAC	TTCGTAATCGTAAGCGACTGATTAGTTGTCTGG
GGATCACCCCCATATACATGGGGAGCAC

>NZ_LT906621|3|3|1294238-1296954|CRT
GGATCACCCCCATATACATTGGGAGCAC	TGGCGTAGTTCCACTAGCTTAGTAGCGGACTTA
GGATCACCCCCATATACATGGGGAGCAC	TCACCAGGTTGTGGCTGTTGGATTGCCCGGCTG
GGATCACCCCCATATACATGGGGAGCAC	TCAACACAAACTTCACGGATAGCTCAAGACATG
GGATCACCCCCATATACATGGGGAGCAC	GTGGCGACGTCACCTACTAGAGTTTCCATATTA
GGATCACCCCCATATACATGGGGAGCAC	ATGGCTTTCCTCTGAATACATAGAATCATGCAA
GGATCACCCCCATATACATGGGGAGCAC	TTCATCTTCTAGTAGCTTTGGATAGCCTCTGTA
GGATCACCCCCATATAATACATGGGGAG	CACCAATAAAGCCGGCTAACTAAAAGCTGGTGAATA
GGATCACCCCCATATACATGGGGAGCAC	AGTACTTGATTCCAACGGCAGAGCTGGGAGTCA
GGATCACCCCCATATACATGGGGAGCAC	TTTTTGTTCAGCTTGTCAATCCCGATTGAGTAA
GGATCACCCCCATATACATGGGGAGCAC	GAGGTGCATAGATTGAGCGAACCATATATTAAG
GGATCACCCCCATATACATGGGGAGCAC	CCCGGAGTTGCTGTCGTTCATCTGCTTCATAAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCTTAGTGGCGGCGGTTTGTGACCTCCAG
GGATCACCCCCATATACATGGGGAGCAC	CAATCGCCAAGCAAACTGCTAGCGAGGCTACTA
GGATCACCCCCATATACATGGGGAGCAC	TTTAAGTAAGCATATCCGTCCTGCCAAACAGTA
GGATCACCCCCATATACATGGGGAGCAC	CTCAGATCGCTAGAAAGCGTCGCGGGCAAGCAA
GGATCACCCCCATATACATGGGGAGCAC	TCGTAACGAGGTTCTTGACACGTGGATGATCCA
GGATCACCCCCATATACATGGGGAGCAC	CTTTTGGCCTGATTCAATCCAGGCATCGTTTAA
GGATCACCCCCATATACATGGGGAGCAC	GCAGGCGGTTTTGCTGCAACGTTCTCATTCCCG
GGATCACCCCCATATACATGGGGAGCAC	ATAAGTCTGAGTATCAGCCATGCTTAATCGGTA
GGATCACCCCCATATACATGGGGAGCAC	TCAAATGCCTTCACCTCCGTTTCGTTCCAAGTG
GGATCACCCCCATATACATGGGGAGCAC	CATATTGCTAAAACGATCGGTGATACAGACTCAG
GGATCACCCCCATATACATGGGGAGCAC	TTAAACATCGATCCCACGACTGGAAACTGGATCA
GGATCACCCCCATATACATGGGGAGCAC	TGGCGGGCGAGATCGCAAAGAATACGTCTAATG
GGATCACCCCCATATACATGGGGAGCAC	GGGTAATTGAGGCAATCCCACAGTCAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CGGTAAAGTCGTTCCATCCCGGCTCAAGACGAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCCCATAGCCCATCAAGACCACGTCATAG
GGATCACCCCCATATACATGGGGAGCAC	ATTATTGTCATTATTAAGCTCCAGTACCAGTTG
GGATCACCCCCATATACATGGGGAGCAC	AGTCCGATCGTGATGCCGAAGTGCTTGTAGATG
GGATCACCCCCATATACATGGGGAGCAC	GTGTATTCCATATCCTTAGAATTTTGTTGCATG
GGATCACCCCCATATACATGGGGAGCAC	ATTCTAACGTAGTACTTGACTTCGTTGTGCCGG
GGATCACCCCCATATACATGGGGAGCAC	CTGGTACTCAAGCAACGTAACGATTAACCTTGA
GGATCACCCCCATATACATGGGGAGCAC	CACCACCAGTAACGTCGATAGCATCCACTTTGG
GGATCACCCCCATATACATGGGGAGCAC	GCTGGCGGTTTGCACGGCAACGGTAGCGTTTGA
GGATCACCCCCATATACATGGGGAGCAC	CCAGAAGTTCCCGTTTTGCGTTGGCGAAATCTG
GGATCACCCCCATATACATGGGGAGCAC	GACAAGGTGACCAGCAGTCATCGCTAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CAAGTGCCATGAGAGGTGGCAATAAATTCTATG
GGATCACCCCCATATACATGGGGAGCAC	TGAGACGTTCGGCGCATGGAAACAGATTACTGG
GGATCACCCCCATATACATGGGGAGCAC	CGTATTGCTCAAGATTAGCCACCTCCTTCTCTG
GGATCACCCCCATATACATGGGGAGCAC	CGGCGTTCCCCGATGCATCAGTAGTGATTGAGG
GGATCACCCCCATATACATGGGGAGCAC	TTTTAACGGCTAACCCGGCTGACATAGTGGCGA
GGATCACCCCCATATACATGGGGAGCAC	GCTAACTACTTACCAAAGGTAGGGGTTGAATGG
GGATCACCCCCATATACATGGGGAGCAC	CGATAGTAAATGTTTTGGGTGGTTGTCAACGTG
GGATCACCCCCATATACATGGGGAGCAC	CAATTAATGCTGATTTGAAAGTTGGAGATATAA
GGATCACCCCCATATACATGGGGAGCAC	TTCGTAATCGTAAGCGACTGATTAGTTGTCTGG
GGATCACCCCCATATACATGGGGAGCAC

>NZ_LT906621|3|4|1294668-1296954|PILER-CR
	TGGCGTAGTTCCACTAGCTTAGTAGCGGACTTA
GGATCACCCCCATATACATGGGGAGCAC	TCACCAGGTTGTGGCTGTTGGATTGCCCGGCTG
GGATCACCCCCATATACATGGGGAGCAC	TCAACACAAACTTCACGGATAGCTCAAGACATG
GGATCACCCCCATATACATGGGGAGCAC	GTGGCGACGTCACCTACTAGAGTTTCCATATTA
GGATCACCCCCATATACATGGGGAGCACATGGCTTTCCTCTGAATACATAGAATCATGCAAGGATCACCCCCATATACATGGGGAGCACTTCATCTTCTAGTAGCTTTGGATAGCCTCTGTAGGATCACCCCCATATAATACATGGGGAGCACCAATAAAGCCGGCTAACTAAAAGCTGGTGAATAGGATCACCCCCATATACATGGGGAGCAC	AGTACTTGATTCCAACGGCAGAGCTGGGAGTCA
GGATCACCCCCATATACATGGGGAGCAC	TTTTTGTTCAGCTTGTCAATCCCGATTGAGTAA
GGATCACCCCCATATACATGGGGAGCAC	GAGGTGCATAGATTGAGCGAACCATATATTAAG
GGATCACCCCCATATACATGGGGAGCAC	CCCGGAGTTGCTGTCGTTCATCTGCTTCATAAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCTTAGTGGCGGCGGTTTGTGACCTCCAG
GGATCACCCCCATATACATGGGGAGCAC	CAATCGCCAAGCAAACTGCTAGCGAGGCTACTA
GGATCACCCCCATATACATGGGGAGCAC	TTTAAGTAAGCATATCCGTCCTGCCAAACAGTA
GGATCACCCCCATATACATGGGGAGCAC	CTCAGATCGCTAGAAAGCGTCGCGGGCAAGCAA
GGATCACCCCCATATACATGGGGAGCAC	TCGTAACGAGGTTCTTGACACGTGGATGATCCA
GGATCACCCCCATATACATGGGGAGCAC	CTTTTGGCCTGATTCAATCCAGGCATCGTTTAA
GGATCACCCCCATATACATGGGGAGCAC	GCAGGCGGTTTTGCTGCAACGTTCTCATTCCCG
GGATCACCCCCATATACATGGGGAGCAC	ATAAGTCTGAGTATCAGCCATGCTTAATCGGTA
GGATCACCCCCATATACATGGGGAGCAC	TCAAATGCCTTCACCTCCGTTTCGTTCCAAGTG
GGATCACCCCCATATACATGGGGAGCAC	CATATTGCTAAAACGATCGGTGATACAGACTCAG
GGATCACCCCCATATACATGGGGAGCAC	TTAAACATCGATCCCACGACTGGAAACTGGATCA
GGATCACCCCCATATACATGGGGAGCAC	TGGCGGGCGAGATCGCAAAGAATACGTCTAATG
GGATCACCCCCATATACATGGGGAGCAC	GGGTAATTGAGGCAATCCCACAGTCAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CGGTAAAGTCGTTCCATCCCGGCTCAAGACGAA
GGATCACCCCCATATACATGGGGAGCAC	TTGATCCCATAGCCCATCAAGACCACGTCATAG
GGATCACCCCCATATACATGGGGAGCAC	ATTATTGTCATTATTAAGCTCCAGTACCAGTTG
GGATCACCCCCATATACATGGGGAGCAC	AGTCCGATCGTGATGCCGAAGTGCTTGTAGATG
GGATCACCCCCATATACATGGGGAGCAC	GTGTATTCCATATCCTTAGAATTTTGTTGCATG
GGATCACCCCCATATACATGGGGAGCAC	ATTCTAACGTAGTACTTGACTTCGTTGTGCCGG
GGATCACCCCCATATACATGGGGAGCAC	CTGGTACTCAAGCAACGTAACGATTAACCTTGA
GGATCACCCCCATATACATGGGGAGCAC	CACCACCAGTAACGTCGATAGCATCCACTTTGG
GGATCACCCCCATATACATGGGGAGCAC	GCTGGCGGTTTGCACGGCAACGGTAGCGTTTGA
GGATCACCCCCATATACATGGGGAGCAC	CCAGAAGTTCCCGTTTTGCGTTGGCGAAATCTG
GGATCACCCCCATATACATGGGGAGCAC	GACAAGGTGACCAGCAGTCATCGCTAGATATGA
GGATCACCCCCATATACATGGGGAGCAC	CAAGTGCCATGAGAGGTGGCAATAAATTCTATG
GGATCACCCCCATATACATGGGGAGCAC	TGAGACGTTCGGCGCATGGAAACAGATTACTGG
GGATCACCCCCATATACATGGGGAGCAC	CGTATTGCTCAAGATTAGCCACCTCCTTCTCTG
GGATCACCCCCATATACATGGGGAGCAC	CGGCGTTCCCCGATGCATCAGTAGTGATTGAGG
GGATCACCCCCATATACATGGGGAGCAC	TTTTAACGGCTAACCCGGCTGACATAGTGGCGA
GGATCACCCCCATATACATGGGGAGCAC	GCTAACTACTTACCAAAGGTAGGGGTTGAATGG
GGATCACCCCCATATACATGGGGAGCAC	CGATAGTAAATGTTTTGGGTGGTTGTCAACGTG
GGATCACCCCCATATACATGGGGAGCAC	CAATTAATGCTGATTTGAAAGTTGGAGATATAA
GGATCACCCCCATATACATGGGGAGCAC	TTCGTAATCGTAAGCGACTGATTAGTTGTCTGG
GGATCACCCCCATATACATGGGGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_LT906621.1\|WP_057195398.1\|1289745_1291035_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479
NZ_LT906621.1\|WP_104878314.1\|1292334_1293129_-\|putative-hydro-lyase	unknown	unknown	gnl\|CDD\|180100
NZ_LT906621.1\|WP_104878313.1\|1288661_1289744_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_LT906621.1\|WP_104878323.1\|1306975_1308403_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|129987
NZ_LT906621.1\|WP_003683897.1\|1306495_1306855_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_LT906621.1\|WP_104878315.1\|1293237_1294206_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_LT906621.1\|WP_104878317.1\|1297865_1298804_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_LT906621.1\|WP_003688751.1\|1282458_1282746_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_LT906621.1\|WP_104878753.1\|1299469_1300177_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
NZ_LT906621.1\|WP_104878311.1\|1284552_1285470_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
NZ_LT906621.1\|WP_104878310.1\|1283163_1284303_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_LT906621.1\|WP_104878322.1\|1303521_1306266_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_LT906621.1\|WP_104878318.1\|1298800_1299457_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
NZ_LT906621.1\|WP_057195397.1\|1291034_1292000_-\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
NZ_LT906621.1\|WP_104878316.1\|1296983_1297862_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_LT906621.1\|WP_104878321.1\|1301876_1303541_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_LT906621.1\|WP_104878319.1\|1300157_1301267_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_LT906621.1\|WP_104878312.1\|1285482_1288662_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_LT906621.1\|WP_104878320.1\|1301275_1301860_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_LT906621.1\|WP_010011610.1\|1281556_1282435_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_LT906621.1\|WP_057195398.1\|1289745_1291035_-\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0
NZ_LT906621.1\|WP_104878314.1\|1292334_1293129_-\|putative-hydro-lyase	gnl\|CDD\|180100	PRK05463, PRK05463, putative hydro-lyase.	1.91766e-171
NZ_LT906621.1\|WP_104878313.1\|1288661_1289744_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_LT906621.1\|WP_104878323.1\|1306975_1308403_-\|amino-acid-permease	gnl\|CDD\|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.50194e-77
NZ_LT906621.1\|WP_003683897.1\|1306495_1306855_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	9.14881e-68
NZ_LT906621.1\|WP_104878315.1\|1293237_1294206_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	2.124e-48
NZ_LT906621.1\|WP_104878317.1\|1297865_1298804_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.51665e-132
NZ_LT906621.1\|WP_003688751.1\|1282458_1282746_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	5.28825e-07
NZ_LT906621.1\|WP_104878753.1\|1299469_1300177_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.7051e-51
NZ_LT906621.1\|WP_104878311.1\|1284552_1285470_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	2.00285e-160
NZ_LT906621.1\|WP_104878310.1\|1283163_1284303_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	5.71217e-64
NZ_LT906621.1\|WP_104878322.1\|1303521_1306266_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	1.90178e-85
NZ_LT906621.1\|WP_104878318.1\|1298800_1299457_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.95834e-76
NZ_LT906621.1\|WP_057195397.1\|1291034_1292000_-\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.71994e-158
NZ_LT906621.1\|WP_104878316.1\|1296983_1297862_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	5.81153e-40
NZ_LT906621.1\|WP_104878321.1\|1301876_1303541_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	9.85616e-81
NZ_LT906621.1\|WP_104878319.1\|1300157_1301267_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.53426e-142
NZ_LT906621.1\|WP_104878312.1\|1285482_1288662_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_LT906621.1\|WP_104878320.1\|1301275_1301860_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	1.28813e-24
NZ_LT906621.1\|WP_010011610.1\|1281556_1282435_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.386e-62

>NZ_LT906621.1|WP_104878315.1|1293237_1294206_+|IS30-family-transposase
MTYSHLTTAELTTIANFFTQGTKAYKVAQMLKRSVETIYRVYRYLKTGATIVDYQQQYVSNKKRCGRKLAQLPQDEVVYINEMVAQGWTPDTIIGRGDRSISCNRRTLYRMFKRGQFGFDAKDLPMHGNRHPNGYVEHRGKAGQLGRSIYERYEDFPNYTKEFGHLEGDTVQGKHHQGAVMTLVEHLSKVEIVLNVHAKKAENINRHLSEWLSKFPRHFFKLITFDNGKEFAGWREIANQFDIHTYFAEVGAPNQRGLNENNNGLLRRDGLTKDRDLRNLPDELVNQLMSKRNRIPRKSLDYRTPYEVFMEHITEDQRQLFF
>NZ_LT906621.1|WP_104878314.1|1292334_1293129_-|putative-hydro-lyase
MTNLTNLSPAEFRRLVRTGDFTSPTSGYCPGYTQANLVIVPQRYAYDFLLLAQRNPRPCPVLEVSDAGSRGLTNFATDVDLANDFPKYRVYRGGELSEEVTSVERLWQNDFVSFLIGCSFSFEAELLAAGIEVRHITEEVNVPMYNTNLPLQGAGALHGNMVVSMRPIPASQVAKAVEVTAALPRVHGAPIHVGDPASLGIKDLSHPDYGDPVTIKDGELPVFWPCGVTPQNAIMQSKLPLVITHAPGHMLITDVLNANLKGNG
>NZ_LT906621.1|WP_057195397.1|1291034_1292000_-|aspartate-carbamoyltransferase-catalytic-subunit
MTTQLVEQLVSLPHFVSVEDLTTDQVNALIARAEEFKNGAPVPELSRPVYVTNMFFENSTRTHTSFAMAEKKLGLTEIPFDASHSSIKKGETLYDTCLTLDALGVDLTVIRASENDYYLPLINPGEGHYLDLGIVNGGDGSGQHPSQCMLDIMTIHEHFGHFKGLKVAIVGDITHSRVARSNMEILNKLGAEVYFSGPEYWYDHAFDKYGKFLPIDELVEEVDVMMLLRVQHERHAGDAHEGDFSAADYHKQYGINEERYALLKPDTIIMHPGPINRGVELADSLVEAPKSAFVAQMKNGVFMRMAMLEAVLRGRKLGGLE
>NZ_LT906621.1|WP_057195398.1|1289745_1291035_-|dihydroorotase
MKTLIKNGTVYNDGRLVKEDVLVEDGIIRAIGKDLHEYLDDDYDELDAGNLLVSPGLVDVHVHYREPGQTEKETIKTGSAAAAHGGFTTVGAMPNVDPIPDTPAKVAQMVAKNKQDGLVHIAQYSAITTDRTSDEVVDMAGVKRAGAFAVSNDGNGVQAAGTMYRAMQAAKAVGLPLAAHVEDESLLFGGVMTEGERSRYLGLPGAPEVVESAQVARDLALAKATGVHYHVCHVSTKDSLAMIHFAKQNGVRVTCEATPHHLLLSDQCIDGHDSNYKMNPPLRHEADRRALVAALNDGTVDMIATDHAPHTEEDKGRDFCCAANGITGSETAFALLYTKLVKTGLLKLERLLDLMATNPAEVFNLTEAGHLEVGKPADIAVFDLNHPYVIDQRDYLSKGINSPFTGMTVYGQTVMTMVDGQVVYQRKEN
>NZ_LT906621.1|WP_104878313.1|1288661_1289744_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MQRYLVLEDGTTYRGTAFGADQAKTGEVVFTTGMTGYQEAITDQSFANQILVFTNPLIGNYGVNLDDDESLLPEIKGVVCRKLARVATNWRMQDDLANFLTQRGIPGLEGIDTRALVKKLRQHGTLRGRLVDDLTDLDQVVAALKQATPMKNIIPLVSTKSPYPNPGTKRNIVVVDFGIKHSILRELAKRDCNVIVLPHTATATQVLNLHADGVFLSNGPGDPMEMTAAAEMVKEVEQHLPVFGICMGHQILALANGAKTVKMKFGHRGFNHPVKNVATGEVNFTSQNHGYAVDAASIDPDRLLITHVEINDGTVEGLRHKHYPAFSVQFHPDAAPGPHDAEQLFDDFINLVDQRKKGRN
>NZ_LT906621.1|WP_104878312.1|1285482_1288662_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVATLTRILRQEAPDALLPTLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLTVSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLELSPATQCLIEKSIAGYKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDCALKLISALKIEGGCNVQLALDPNSYDYNVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEIKNPVTKTTYAEFEPALDYVVVKIPRWPFDKFTKADRRLGSQMKATGEVMAIGRTAEEALLKAVASLEIDQKDLFSKEAAAASDRQLEDKLVHAQDDRLFYIAEAFRRGYSLADLHELTRINHYFLDIVAGLVEEEGRIKAAGLDKEVIYEAKRDGFADTTLATLLNQTPAAIRAFRKANGIVPVYKMVDTCAAEFDSATPYFYSTYETENESRRSAKPSVLVIGSGPIRIGQGVEFDYATVHCVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGGQTAINLAAGLEENGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTCQGVLDAAKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVDAICDGERVLLPGIMEHIEHAGVHSGDSMAVYPPQSFSGAVKVQIEEATKKLAVALKCVGIMNIQFIIHDGQAYVLEVNPRASRTVPFLSKVTGIEMAQLATKVILGHNLVKQGYRSGLAPESQMIHVKAPVFSFSKLGDVDSYLGPEMKSTGEVMGSDTTYEKALYKAFAGAGMEVPDNGAVLLTIEDNDKAQILPLAKRFLAIGYRILATSGTAAFLRENGLRPTVVAKLHEQGQPAILDVIKDKRADLVINTMGHDDEKNSDGFIIRQTAIEHHVPLLTTLDTVDALLRSLEMTSFKTTEL
>NZ_LT906621.1|WP_104878311.1|1284552_1285470_-|dihydroorotate-dehydrogenase
MTNRLAVSLPGLNMTNPLMPASGTFGFGDAWGADQVNFNDLGALVIKTTTPEARTGNPQPQIAKLTDGVMNAVGLTNPGVDAVIKDKLPNLAKQYPDLPVVGSIGGSTETDYVLVAEKLAKSGLVSALELNVSCPNVAHGGMAFGTDAKVLESLTNQVKRVVGEVPLYVKLTPNVTDITEVARGAEAGGADGLSLINTVLGLHIDIRTGQPVLGNGMGGYSGTAVKPLAVRMVYQVAHATKLPIIGMGGIETAADVLEFMMAGASAVAVGAAHFKDIAACPHIAAQLPALMDELGIKTLAEVKRV
>NZ_LT906621.1|WP_104878310.1|1283163_1284303_-|IS30-family-transposase
MTHLNDITTDTNVSTRSKGSHLTIDDRVKISVLKELEYSNRMIAQYIGVAHGTIDREIKRGMVTKMSKQSNNGKVYCYYKEYYDPYTAQERYEKSRSNCGRTPIYQSSPEIINLLDDLMLGEFDFKDHDKFESLDSQKCSPYAALKIAESLVNDDVKLPASERSIYNWIDKGLLRTKNIDLLEKTRRTKAKHGRTPKREQPGKNISQRPKEVKTCTTLGHWEMDTVQGKKSAEDPVILVLAERLTRYNLAFKITSKTPNAVSRVITKLKELTGDYFDEIFKTITPDNGSEFFEVANEVDQVYYADAYSPWQRGTNENNNRLLRRSITKGTSLQLFSEFDVEQANLRLNSYPRKILGGKSSLDRFEEEILKIIDPETLAV
>NZ_LT906621.1|WP_003688751.1|1282458_1282746_-|transposase
MTKHSYDKEFKEQAVQYYLDNKDHMTMNEISKNLGIGASTLHKWIKLFTETGEFGRGSGNFASDKDKEIARLKRQLRDAEGAIEVLKKSIGILSK
>NZ_LT906621.1|WP_010011610.1|1281556_1282435_-|IS3-family-transposase
MDVQHALESHPSINGMCDYVGISRSGYYQREKRHNHQSPRKLRKKFIQGEIKAIWLKSLCIYGAGKITQELRSKGYKIAERTVGKYMRELGIHAVYLTPWTTTTRNSKFDKQLINILDEQFNPLRPNAVWCIDTTYIPVHDGFVYLTSIMDLYSRRIIGWDLSETLEVSNVIPLIEKTKHSRHISKPLIMHSDRGSQFTSEAYNQVTANMTLSYSKKAYPWDNACIESFHALIKREWINRFKIHSYSEAKRLVFQYIETFYNTVRIHSHCGFKSPKQLEDEYQTQIQNLVVA
>NZ_LT906621.1|WP_104878316.1|1296983_1297862_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVIALSRVPASLRGDLTKWCQEIQTGIYVGRFSARIRDLLWERIQKNIGNGEATIVYTTNNELGYAFRSTREDREVVNYDGIPLLMHLEKPPSDIKHGFSDAAKFHHAKQARKGKETGMTRTVVALDIETTGLNSATDEIISIGAVKSTKGRGLERFYRIVRTSKQIPPKIVKLTGLNQRKVNQEGISLEAALTDFKDFIGHATVVGYNVAFDWEFIERGYDKIGQDRLGNRIIDLLKVVRQKEVFLDNFRFETVLKYYQIENHDQHNSLADAEALIKLMTKLIEKGFLKI
>NZ_LT906621.1|WP_104878317.1|1297865_1298804_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MKSGIGAEKPKLTELSRTSDRISFLYLEHAKINRQDSAIKVMDARGIVFVPVALISVLLLGPGVDVTHRAMELMGDSGLAVVWVGEYGVRQYAHGRALNHSSRLLEKQAKLVSNVRSRVAVARKMYQMRFPNEDVTKLTMQQLRGKEGSRVRKVYRKLSNETGVAWNGREYNVDNFDEGTPINKALTAANQTLYGLSYSVVAALGASPGLGFIHTGHDLAFIYDFADIYKANYSIPISFEMTAKYGDEDIATRTRQAMRDAFRDGKLLKQMVHDLKFLFEVEDDQDLEFMSLWDDKEGMQKFGVQYHEIGEE
>NZ_LT906621.1|WP_104878318.1|1298800_1299457_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEVDTKNRQKISDLTHLGAYHSWVEDSFPREVVKGERKRHLWRLDQVQGKEYLLVLSDDQPNMNRLEKYGVPGSAQSKIYDQFLSQIQTGKVMRFRLTANPVHRVTEPGEKVGRVYPHVTIAQQEKWLIDRAERNGFTLLTTADGYQFDVVGRDRPQLLHKGQRRVKLNRVSYEGLLKVSDADLFKKLLVNGIGKEKAYGMGLMTVIPVNEKA
>NZ_LT906621.1|WP_104878753.1|1299469_1300177_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLTVNLTGPLQSYGNEATFERRTTYHYPSKSAVIGMIAAGLGYRRDDQRIESLNKLGIAVRIDQRGKIMTDFHTVRPQNAKNSKLTYRDYLQDAVFVVAIGSEDDNLIGQIKYALRHPKFQLFLGRRANVPAGVLRIEEFDTDPMTVLKELPWQASDWFKKRMKKELYSAEVVADWGLEKGADRNLIRVKDKVGSFNVQHRYHKYRPAIRTFVTLKNYMYQENSGEHDVWSSI
>NZ_LT906621.1|WP_104878319.1|1300157_1301267_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MMKNLYLDINVLQTVPSSNINRDDTGTPKTAIYGGVTRSRVSSQSWKRVMRQAFMTDSEGAEWLNSHRTKHGVSLLANWIKSCSKDVSDEVALKKSLDTFKIVGLLSKKAKPDKKTGEYLTGALLQLSNGQLDKLAHYVLSHDELDKKEIKETLMEKSSLDLALFGRMVADDPELNVDAASQVAHAISTHAIVPEYDFYTAIDDDKEDSQAGSAMMGTLAYNSSTLYRYANVNINELMHNLGSTELTIEGVKLFVKEFMLTMPTGKENTFANKTLPQYVMITLREDTPVNLVSAFEEPVKSNHGYVEESIERLEKEYSDTLKLVEQPIYTGVLTTKQSNLNQVANTEELLDQVAKFVSEKVVDDENVNG
>NZ_LT906621.1|WP_104878320.1|1301275_1301860_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSHISKTVAKIIHQLYNNGDLDKGTLAKLRTANSLLSRDATAVWPLIFEYIEDKQDLSQTGEPTFAENAIFAALRAYAIYQQGTEESVFKHSDDWRENSSLFQAFGQLRSDPDFTDSLDKRVSNVLTSLNFQSAENSITQLVRILKSKGQGGQIDFAQLGEDLYRFQFSSESARQVTLKWGQDYYWKNLKDNQE
>NZ_LT906621.1|WP_104878321.1|1301876_1303541_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKNRHFNLITEPWIKVLDENYQELTVSMEEVLKNARHYRQLAGEMRSQDLVILRLLLAVLLSVYQRVNADGEPYEGLTIDDAWQVEVDSDLDFEDLIEEMQETWQTLYEGGEFSRAVFDYLKAYEDRFDFFGEHAFYQVSREFYDAHVPVKNQVAKGTGTVAIKQINRNISESGNSIAVFTPRTNTFKNQLSIDELVRWVLTYQNYTGVTDKTKVNRADKFSVSSGWLYNLYPVYAQGTNLFETLLLNLTLFEDEQDKYSQPKPVWEWATKRYLKGRIDETVPDNLPELYTLWSRMLHIEWEEGTPTIFTAGLPKVSNVNVFLEPMTTWRQDKEGYKPRVKRLDNLGTAMWRNFGDYVGTDDEENRVPGIVWWLNFLTEEGLLAQEANIDLASAVMISDGKGSSQMPAAESVDDFTIRADVLFDPDPLAARRWPRRIEEVIELTKKVGGTLYYFAKEVAELRDSNGSGSFANRISAEFYDQLNEPFLGWLASLRNDQDRDEKILEWKKALHSLVMQTARKLVQESSPTEMRGKDSTNIFTLYNATQLKIRKQLS
>NZ_LT906621.1|WP_104878322.1|1303521_1306266_-|CRISPR-associated-helicase/endonuclease-Cas3
MKELSKQVKALWGKKSNVDGQELWQPLVVHLLDTKNVINWLYGHWLTDGQRKAVQGDLSEEAGQQLAEFLGAVHDLGKATPVFQIKKSYNGDQDLDDQLMERLIQIGFDHLGDLILASPRESPHALAGEALLEQFGIDKTVGAIIGGHHGKPQSKVPRAEIDDHTKNYWQVDNLVKAREGNWLKVQRELFNFCLQECGYQSVADVPANLTQPQAILLEGLLIMADWLASTEYLGDDRSKPLFPLIPLHNSMEDLDLGARFQRAILTWRVEDQWFPEQITDIDEQFQKRWGFKPRPVQRQMDQVIQDATDPGIIIIELEPGAGKTEIALEAVEQLAYTNGEQGLFFGLPTQATSNAMFDRVTDWLAKVAKDDDAKLGIKLMHSKAEFNPTYADLKIPQAHNVEEEGSVTVNSWFSGKKSILEEFSIGTIDHLLLMGLKQKHLFLRHLGMSGKVVVIDEVHAYDAYMDSYLTKALEWLGAYHVPVIALSATLPIATRSALIEAYCKGKYGKKKVEGAPSWDKNQAYPLISVLDGKRLVQKSDFMRNTEKRVVEVERLSVEEEGLIKAVLEAVEDGGVAGVIVNTVKRAQMIASQIPKGIPKLILHSAFLAPDRAEIETKLQGLIGKKYGKRPKKMIIIGTQVLEQSLDIDFDIMFTDIAPMDLLIQRIGRLHRHDIQRPSKLVTPQVKIMGINDYGDYGSANEAIYSKYLLMKTDQYLPEQLTIPDDISPLVQATYRDDGEMEPDLREAKRVFDVKHKEEQDKAEKFQIKSPKQRKSIHGWLDSELVDANKDEVRAQAAVRDIQETLEVLMVKQVKGDYYLLDGQQLEEVDSKTIAQQLIRIPAAVTPRIDKSIELLETQTAKNFPDWQADPWLKGALVVVLDEQNSVELGNWRIHYSRKFGLSYEKADDDEKQAF
>NZ_LT906621.1|WP_003683897.1|1306495_1306855_-|50S-ribosomal-protein-L19
MRQNQLIEKVTAGQLRSDIPAFRAGDTVRVHALIVEGTRERVQIFEGVVIKRHGAGISATYTVRKISNGIGVERTFPLHSPRVEKIEVVRYGRVRRAKLYYLRERTGKSARIAERRRDK
>NZ_LT906621.1|WP_104878323.1|1306975_1308403_-|amino-acid-permease
MKKLIARLLKQEDPSVYQLKDGQLEPTLRTIDLIGLGTGMVVGTAIFTLPGIVAAEHTGPAVPLAFIVAAIVAGLSALAYAETASVLPFAGSAFSWMNVLFGEFFGWIAGWALLAEYFISVAFVASGWSAYMQGFLASFGIKLPTALTGGFNPASGSYVDIFAAIAILAVGWLLSHGVHQVARIENTIVAIKLLVIILFIVVGATAIHTQNYHPFIPAHRPGTTFGGWTGIMAGASQIFIAYVGFDAIAANTAETKNPQKTMPRGLIGTLVLGTGFFIVVSLVLVGMFKYSRYANNAEPAAWALRESGHYLTANLLSVVALIGIFSALIAILLASSRLIYAFGRDGLLPSFLGHVDAKRVPNRALWTITVLAMILGSIFPFTFLATLVSAGTLVAFIFVSLGIYALRRREGKDLPEGQFKMPGYPILPAVSVIFSAVIFWNLNVDAKWMMVGWFAIGLLVYFLYGIRHSTLAKKG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_LT906621_2	2.7\|848903\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	848903-848932	30	NC_029068	Lactobacillus phage LfeSau, complete genome	29697-29726	1	0.967
NZ_LT906621_2	2.20\|849762\|30\|NZ_LT906621\|CRT	849762-849791	30	MN830252	Lactobacillus phage JNU_P1, complete genome	11229-11258	2	0.933
NZ_LT906621_2	2.20\|849762\|30\|NZ_LT906621\|CRT	849762-849791	30	MN830253	Lactobacillus phage JNU_P5, complete genome	11257-11286	2	0.933
NZ_LT906621_2	2.18\|849629\|30\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	849629-849658	30	GU323708	Lactobacillus phage phiPYB5, complete genome	23675-23704	3	0.9
NZ_LT906621_2	2.20\|849762\|30\|NZ_LT906621\|CRT	849762-849791	30	NC_021909	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence	456213-456242	3	0.9
NZ_LT906621_1	1.1\|289128\|38\|NZ_LT906621\|CRT	289128-289165	38	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	3170-3207	4	0.895
NZ_LT906621_1	1.1\|289128\|38\|NZ_LT906621\|CRT	289128-289165	38	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	8001-8038	4	0.895
NZ_LT906621_1	1.5\|289392\|38\|NZ_LT906621\|CRT	289392-289429	38	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	3170-3207	5	0.868
NZ_LT906621_1	1.5\|289392\|38\|NZ_LT906621\|CRT	289392-289429	38	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	8001-8038	5	0.868
NZ_LT906621_3	3.29\|1295979\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295979-1296011	33	KP054477	Lactobacillus phage LfeInf, complete genome	44085-44117	5	0.848
NZ_LT906621_1	1.3\|289260\|38\|NZ_LT906621\|CRT	289260-289297	38	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	3170-3207	6	0.842
NZ_LT906621_1	1.3\|289260\|38\|NZ_LT906621\|CRT	289260-289297	38	NZ_CP012877	Weissella cibaria strain CH2 plasmid pMKC04, complete sequence	8001-8038	6	0.842
NZ_LT906621_2	2.1\|848507\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	848507-848536	30	CP054911	Pantoea ananatis strain FDAARGOS_680 plasmid unnamed3, complete sequence	217305-217334	6	0.8
NZ_LT906621_2	2.16\|849497\|30\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	849497-849526	30	NZ_CP048110	Klebsiella michiganensis strain BD177 plasmid unnamed2	34076-34105	6	0.8
NZ_LT906621_2	2.16\|849497\|30\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	849497-849526	30	NZ_CP048111	Klebsiella michiganensis strain BD177 plasmid unnamed3	29821-29850	6	0.8
NZ_LT906621_3	3.29\|1295979\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295979-1296011	33	MT623546	Acinetobacter phage Ab_121, complete genome	77078-77110	6	0.818
NZ_LT906621_3	3.29\|1295979\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295979-1296011	33	MK170160	Acinetobacter phage TAC1, complete genome	57132-57164	6	0.818
NZ_LT906621_3	3.29\|1295979\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295979-1296011	33	MH800199	Acinetobacter phage vB_AbaM_B09_Aci02-2, complete genome	57948-57980	6	0.818
NZ_LT906621_2	2.19\|849695\|31\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	849695-849725	31	KT351734	Pectobacterium carotovorum plasmid Drgb3, complete sequence	125833-125863	7	0.774
NZ_LT906621_2	2.19\|849695\|31\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	849695-849725	31	NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	40253-40283	7	0.774
NZ_LT906621_2	2.19\|849695\|31\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	849695-849725	31	NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	65415-65445	7	0.774
NZ_LT906621_3	3.15\|1295123\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295123-1295155	33	HQ141410	Lactobacillus phage LF1, complete genome	39998-40030	7	0.788
NZ_LT906621_2	2.1\|848507\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	848507-848536	30	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	862104-862133	8	0.733
NZ_LT906621_2	2.12\|849233\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	849233-849262	30	NZ_CP032858	Bacillus subtilis subsp. subtilis strain 2RL2-3 plasmid unnamed1, complete sequence	4086-4115	8	0.733
NZ_LT906621_2	2.12\|849233\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	849233-849262	30	NZ_CP032873	Bacillus subtilis subsp. subtilis strain 2KL1 plasmid unnamed1, complete sequence	25119-25148	8	0.733
NZ_LT906621_2	2.12\|849233\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	849233-849262	30	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	127337-127366	8	0.733
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	NZ_CP027175	Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1	4790-4822	8	0.758
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	NZ_CP015000	Pseudomonas aeruginosa strain PA7790 plasmid pPA7790, complete sequence	12124-12156	8	0.758
NZ_LT906621_3	3.4\|1294449\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294449-1294481	33	MT774487	Salmonella phage MG40, complete genome	7291-7323	8	0.758
NZ_LT906621_3	3.28\|1295918\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295918-1295950	33	NC_011273	Mycobacterium phage Myrna, complete genome	7427-7459	8	0.758
NZ_LT906621_3	3.33\|1296223\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1296223-1296255	33	NZ_CP018875	Bacillus megaterium strain JX285 plasmid unnamed2, complete sequence	108535-108567	8	0.758
NZ_LT906621_2	2.6\|848837\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	848837-848866	30	NC_030948	Ralstonia phage RSP15 DNA, complete genome	20026-20055	9	0.7
NZ_LT906621_2	2.6\|848837\|30\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	848837-848866	30	MH572280	Microviridae sp. isolate SD_SC_49, complete genome	295-324	9	0.7
NZ_LT906621_3	3.21\|1295489\|34\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295489-1295522	34	NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	132953-132986	9	0.735
NZ_LT906621_3	3.21\|1295489\|34\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295489-1295522	34	NZ_CP012886	Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence	403280-403313	9	0.735
NZ_LT906621_3	3.29\|1295979\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295979-1296011	33	MN694510	Marine virus AFVG_250M493, complete genome	29059-29091	9	0.727
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	MT521994	Gordonia phage Magel, complete genome	19736-19768	10	0.697
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	MG962368	Gordonia phage Gravy, complete genome	19736-19768	10	0.697
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	MN585988	Gordonia Phage Odesza, complete genome	19736-19768	10	0.697
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	MG962369	Gordonia phage Kerry, complete genome	19736-19768	10	0.697
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	MT498039	Gordonia phage Gill, complete genome	19736-19768	10	0.697
NZ_LT906621_3	3.2\|1294327\|33\|NZ_LT906621\|PILER-CR,CRISPRCasFinder,CRT	1294327-1294359	33	NC_048817	Gordonia phage Tanis, complete genome	19586-19618	10	0.697
NZ_LT906621_3	3.33\|1296223\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1296223-1296255	33	NZ_CP015040	Rhodovulum sp. P5 plasmid pRGUI01, complete sequence	95204-95236	10	0.697
NZ_LT906621_3	3.43\|1296833\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1296833-1296865	33	NZ_AP021860	Alteromonas sp. I4 plasmid pAltI4, complete sequence	49622-49654	10	0.697
NZ_LT906621_3	3.25\|1295735\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1295735-1295767	33	MN694776	Marine virus AFVG_250M599, complete genome	36293-36325	11	0.667
NZ_LT906621_3	3.37\|1296467\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1296467-1296499	33	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	823342-823374	11	0.667
NZ_LT906621_3	3.37\|1296467\|33\|NZ_LT906621\|CRISPRCasFinder,CRT,PILER-CR	1296467-1296499	33	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	596075-596107	11	0.667

1. spacer 2.7|848903|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NC_029068 (Lactobacillus phage LfeSau, complete genome) position: , mismatch: 1, identity: 0.967

ataatttctgcacatagcataagcaccatc	CRISPR spacer
atactttctgcacatagcataagcaccatc	Protospacer
*** **************************

2. spacer 2.20|849762|30|NZ_LT906621|CRT matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 2, identity: 0.933

aattggaaagttggtttcgaagattccagg	CRISPR spacer
aatcggaaagttggtttcgaagatcccagg	Protospacer
***.********************.*****

3. spacer 2.20|849762|30|NZ_LT906621|CRT matches to MN830253 (Lactobacillus phage JNU_P5, complete genome) position: , mismatch: 2, identity: 0.933

aattggaaagttggtttcgaagattccagg	CRISPR spacer
aatcggaaagttggtttcgaagatcccagg	Protospacer
***.********************.*****

4. spacer 2.18|849629|30|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to GU323708 (Lactobacillus phage phiPYB5, complete genome) position: , mismatch: 3, identity: 0.9

ccaacaagtatcataggaataacgcggcta	CRISPR spacer
ctaacaagtatcacaggaataacgcggcca	Protospacer
*.***********.**************.*

5. spacer 2.20|849762|30|NZ_LT906621|CRT matches to NC_021909 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1e, complete sequence) position: , mismatch: 3, identity: 0.9

aattggaaagttggtttcgaag--attccagg	CRISPR spacer
acttggaaagttggtttcgaagacattcca--	Protospacer
* ********************  ******

6. spacer 1.1|289128|38|NZ_LT906621|CRT matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 4, identity: 0.895

caaatcgcacgacaaagatttttacgaaaaaattggaa	CRISPR spacer
tgaatctcacgacaaagatttttacgaaaaaattggag	Protospacer
..**** ******************************.

7. spacer 1.1|289128|38|NZ_LT906621|CRT matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 4, identity: 0.895

caaatcgcacgacaaagatttttacgaaaaaattggaa	CRISPR spacer
tgaatctcacgacaaagatttttacgaaaaaattggag	Protospacer
..**** ******************************.

8. spacer 1.5|289392|38|NZ_LT906621|CRT matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 5, identity: 0.868

caaatcgcacggcaaagatttttacgaaaaaattggaa	CRISPR spacer
tgaatctcacgacaaagatttttacgaaaaaattggag	Protospacer
..**** ****.*************************.

9. spacer 1.5|289392|38|NZ_LT906621|CRT matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 5, identity: 0.868

caaatcgcacggcaaagatttttacgaaaaaattggaa	CRISPR spacer
tgaatctcacgacaaagatttttacgaaaaaattggag	Protospacer
..**** ****.*************************.

10. spacer 3.29|1295979|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to KP054477 (Lactobacillus phage LfeInf, complete genome) position: , mismatch: 5, identity: 0.848

gtgtattccatatccttagaattttgttgcatg	CRISPR spacer
gtaaactccatatccttagaattctgttgcata	Protospacer
**. *.*****************.********.

11. spacer 1.3|289260|38|NZ_LT906621|CRT matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 6, identity: 0.842

caaatcgcacggcaaagatttttacgaaaaaattggga	CRISPR spacer
tgaatctcacgacaaagatttttacgaaaaaattggag	Protospacer
..**** ****.************************..

12. spacer 1.3|289260|38|NZ_LT906621|CRT matches to NZ_CP012877 (Weissella cibaria strain CH2 plasmid pMKC04, complete sequence) position: , mismatch: 6, identity: 0.842

caaatcgcacggcaaagatttttacgaaaaaattggga	CRISPR spacer
tgaatctcacgacaaagatttttacgaaaaaattggag	Protospacer
..**** ****.************************..

13. spacer 2.1|848507|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to CP054911 (Pantoea ananatis strain FDAARGOS_680 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.8

gttttgttttgccaatagcaacatcggccg	CRISPR spacer
cagttcctttgccaatagcaacaacggccg	Protospacer
   ** .**************** ******

14. spacer 2.16|849497|30|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048110 (Klebsiella michiganensis strain BD177 plasmid unnamed2) position: , mismatch: 6, identity: 0.8

tttacaacgccagtgatattgcggttgatc	CRISPR spacer
ttgaaaacgccagtgatattgcggaaggta	Protospacer
** * *******************  *.*

15. spacer 2.16|849497|30|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP048111 (Klebsiella michiganensis strain BD177 plasmid unnamed3) position: , mismatch: 6, identity: 0.8

tttacaacgccagtgatattgcggttgatc	CRISPR spacer
ttgaaaacgccagtgatattgcggaaggta	Protospacer
** * *******************  *.*

16. spacer 3.29|1295979|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to MT623546 (Acinetobacter phage Ab_121, complete genome) position: , mismatch: 6, identity: 0.818

gtgtattccatatccttagaattttgttgcatg---	CRISPR spacer
ttgtattccatatccttagca---tgttgaatgtaa	Protospacer
 ****************** *   ***** ***

17. spacer 3.29|1295979|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to MK170160 (Acinetobacter phage TAC1, complete genome) position: , mismatch: 6, identity: 0.818

gtgtattccatatccttagaattttgttgcatg---	CRISPR spacer
ttgtattccatatccttagca---tgttgaatgtaa	Protospacer
 ****************** *   ***** ***

18. spacer 3.29|1295979|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to MH800199 (Acinetobacter phage vB_AbaM_B09_Aci02-2, complete genome) position: , mismatch: 6, identity: 0.818

gtgtattccatatccttagaattttgttgcatg---	CRISPR spacer
ttgtattccatatccttagca---tgttgaatgtaa	Protospacer
 ****************** *   ***** ***

19. spacer 2.19|849695|31|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to KT351734 (Pectobacterium carotovorum plasmid Drgb3, complete sequence) position: , mismatch: 7, identity: 0.774

tcctgttttggctagttctcaaaacttatat	CRISPR spacer
tacccatttagctaggtctcaaaacttataa	Protospacer
* *.  ***.***** **************

20. spacer 2.19|849695|31|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047439 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence) position: , mismatch: 7, identity: 0.774

tcctgttttggctagttctcaaaacttatat	CRISPR spacer
tttttctttgtctagttctgaaaacttattt	Protospacer
*..* .**** ******** ********* *

21. spacer 2.19|849695|31|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047440 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence) position: , mismatch: 7, identity: 0.774

tcctgttttggctagttctcaaaacttatat	CRISPR spacer
tttttctttgtctagttctgaaaacttattt	Protospacer
*..* .**** ******** ********* *

22. spacer 3.15|1295123|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to HQ141410 (Lactobacillus phage LF1, complete genome) position: , mismatch: 7, identity: 0.788

ctcagatcgctagaaagcgtcgcgggcaagcaa	CRISPR spacer
ctgaaaagcctagaaagcgtcgcgggaaagaaa	Protospacer
** *.*   ***************** *** **

23. spacer 2.1|848507|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

gttttgttttgccaatagcaacatcggccg	CRISPR spacer
aatttggtttgccaatatcaacatcacggg	Protospacer
. **** ********** *******.   *

24. spacer 2.12|849233|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032858 (Bacillus subtilis subsp. subtilis strain 2RL2-3 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccttcatttagcaagatattgaaaaaccat	CRISPR spacer
tattcatttagaaagatattgaaaggaaaa	Protospacer
. ********* ************..  *

25. spacer 2.12|849233|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032873 (Bacillus subtilis subsp. subtilis strain 2KL1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ccttcatttagcaagatattgaaaaaccat	CRISPR spacer
tattcatttagaaagatattgaaaggaaaa	Protospacer
. ********* ************..  *

26. spacer 2.12|849233|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 8, identity: 0.733

ccttcatttagcaagatattgaaaaaccat	CRISPR spacer
tattcatttagaaagatattgaaaggaaaa	Protospacer
. ********* ************..  *

27. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027175 (Pseudomonas aeruginosa strain AR_0230 plasmid unnamed1) position: , mismatch: 8, identity: 0.758

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cccgcttgttctggctgttggagtgcccggcgg	Protospacer
.*  *  *** *********** ******** *

28. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015000 (Pseudomonas aeruginosa strain PA7790 plasmid pPA7790, complete sequence) position: , mismatch: 8, identity: 0.758

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cccgcttgttctggctgttggagtgcccggcgg	Protospacer
.*  *  *** *********** ******** *

29. spacer 3.4|1294449|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 8, identity: 0.758

gtggcgacgtcacctactagagtttccatatta	CRISPR spacer
ccggcgacgtcacctactacggtttcccctttg	Protospacer
 .***************** .****** . **.

30. spacer 3.28|1295918|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NC_011273 (Mycobacterium phage Myrna, complete genome) position: , mismatch: 8, identity: 0.758

agtccgatc------gtgatgccgaagtgcttgtagatg	CRISPR spacer
------atcagcggggtgttgccgaagggcttgtagatg	Protospacer
      ***      *** ******** ***********

31. spacer 3.33|1296223|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018875 (Bacillus megaterium strain JX285 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

gctggcggtttgcacggcaacggtagcgtttga	CRISPR spacer
tttggcggttttcatggcaacggtagggcctgg	Protospacer
 .********* **.*********** *..**.

32. spacer 2.6|848837|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NC_030948 (Ralstonia phage RSP15 DNA, complete genome) position: , mismatch: 9, identity: 0.7

agttctccgaatccgtcttcattctccgtt	CRISPR spacer
agttctccgaatccgtcttcaagaatgaag	Protospacer
*********************    . .

33. spacer 2.6|848837|30|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to MH572280 (Microviridae sp. isolate SD_SC_49, complete genome) position: , mismatch: 9, identity: 0.7

agttctccgaatccgtcttcattctccgtt	CRISPR spacer
cgttctccgaatccttcttcatctatttct	Protospacer
 ************* *******.. .. .*

34. spacer 3.21|1295489|34|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

catattgctaaaacgatcggtgatacagactcag	CRISPR spacer
gatattgctaagacgatcggtgacacggtcggca	Protospacer
 **********.***********.**.* *   .

35. spacer 3.21|1295489|34|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012886 (Mycobacterium chimaera strain AH16 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

catattgctaaaacgatcggtgatacagactcag	CRISPR spacer
gatattgctaagacgatcggtgacacggtcggca	Protospacer
 **********.***********.**.* *   .

36. spacer 3.29|1295979|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to MN694510 (Marine virus AFVG_250M493, complete genome) position: , mismatch: 9, identity: 0.727

gtgtattccatatccttagaattttgttgcatg	CRISPR spacer
ttgtatttcatatccttaggattttttgaaact	Protospacer
 ******.***********.***** * . *.

37. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to MT521994 (Gordonia phage Magel, complete genome) position: , mismatch: 10, identity: 0.697

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cgaccaggttgtggctgtcggaatgctctcgga	Protospacer
. ****************.*** ***.*    .

38. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to MG962368 (Gordonia phage Gravy, complete genome) position: , mismatch: 10, identity: 0.697

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cgaccaggttgtggctgtcggaatgctctcgga	Protospacer
. ****************.*** ***.*    .

39. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to MN585988 (Gordonia Phage Odesza, complete genome) position: , mismatch: 10, identity: 0.697

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cgaccaggttgtggctgtcggaatgctctcgga	Protospacer
. ****************.*** ***.*    .

40. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to MG962369 (Gordonia phage Kerry, complete genome) position: , mismatch: 10, identity: 0.697

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cgaccaggttgtggctgtcggaatgctctcgga	Protospacer
. ****************.*** ***.*    .

41. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to MT498039 (Gordonia phage Gill, complete genome) position: , mismatch: 10, identity: 0.697

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cgaccaggttgtggctgtcggaatgctctcgga	Protospacer
. ****************.*** ***.*    .

42. spacer 3.2|1294327|33|NZ_LT906621|PILER-CR,CRISPRCasFinder,CRT matches to NC_048817 (Gordonia phage Tanis, complete genome) position: , mismatch: 10, identity: 0.697

tcaccaggttgtggctgttggattgcccggctg	CRISPR spacer
cgaccaggttgtggctgtcggaatgctctcgga	Protospacer
. ****************.*** ***.*    .

43. spacer 3.33|1296223|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015040 (Rhodovulum sp. P5 plasmid pRGUI01, complete sequence) position: , mismatch: 10, identity: 0.697

gctggcggtttgcacggcaacggtagcgtttga	CRISPR spacer
gacagcggtctggacggcaacggtagcggcatc	Protospacer
* ..*****.** *************** .

44. spacer 3.43|1296833|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP021860 (Alteromonas sp. I4 plasmid pAltI4, complete sequence) position: , mismatch: 10, identity: 0.697

caattaatgctgatttgaaagttggagatataa	CRISPR spacer
aaattgatgctgatttgaaaattggcaaagcct	Protospacer
 ****.**************.**** .* ..

45. spacer 3.25|1295735|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to MN694776 (Marine virus AFVG_250M599, complete genome) position: , mismatch: 11, identity: 0.667

cggtaaagtcgttccatcccggctcaagacgaa	CRISPR spacer
cgggaaagtccttccatcccggcttggccttgc	Protospacer
*** ****** *************...  . .

46. spacer 3.37|1296467|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 11, identity: 0.667

tgagacgttcggcgcatggaaacagattactgg	CRISPR spacer
gaagacgttcggcgcatgcaagcagacccaaat	Protospacer
 .**************** **.****..   .

47. spacer 3.37|1296467|33|NZ_LT906621|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 11, identity: 0.667

tgagacgttcggcgcatggaaacagattactgg	CRISPR spacer
gaagacgttcggcgcatgcaagcagacccaaat	Protospacer
 .**************** **.****..   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

86494 : 223419

111

Streptococcus_phage(18.42%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057194972.1\|86494_87793_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.1e-92	48.6
WP_104877724.1\|88295_89309_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_086439508.1\|89565_90819_-\|tRNA	tyrosine--tRNA ligase	A0A1L2CUL7	Pectobacterium_phage	5.1e-84	42.0
WP_104877725.1\|91287_92742_+	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_003685732.1\|92745_93489_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-32	41.9
WP_104877726.1\|93947_95321_+	amino acid permease	NA	NA	NA	NA
WP_086439505.1\|96201_97401_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
WP_104877727.1\|97636_98557_+	ribonucleoside hydrolase RihC	NA	NA	NA	NA
WP_104877728.1\|98745_99483_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA
WP_104877729.1\|99501_100437_+	nucleoid occlusion protein	I3NLC2	Bifidobacterium_phage	6.2e-10	33.6
WP_104877730.1\|100450_101284_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	1.0e-16	32.9
WP_003682416.1\|101296_101497_+	DUF951 domain-containing protein	NA	NA	NA	NA
WP_057194965.1\|101512_102610_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_104877731.1\|102643_103417_+	DUF1129 domain-containing protein	NA	NA	NA	NA
WP_104877732.1\|103678_104821_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	6.7e-59	32.6
WP_104877733.1\|105169_106165_+	LCP family protein	NA	NA	NA	NA
WP_104877734.1\|106164_106935_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_104877735.1\|106951_107692_+	CpsD/CapB family tyrosine-protein kinase	NA	NA	NA	NA
WP_104877736.1\|107715_108486_+	exopolysaccharide biosynthesis protein	NA	NA	NA	NA
WP_104877737.1\|108516_109458_+	GDP-mannose 4,6-dehydratase	A0A1V0SAI6	Catovirus	1.9e-43	35.8
WP_104877738.1\|109411_110101_+	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA	NA	NA	NA
WP_104877739.1\|110137_110971_+	glycosyltransferase	NA	NA	NA	NA
WP_003688751.1\|111765_112053_+\|transposase	transposase	NA	NA	NA	NA
WP_010011610.1\|112076_112955_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_104877741.1\|113255_114467_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_104877742.1\|114456_115356_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_104877743.1\|115356_116343_+	Stealth CR1 domain-containing protein	NA	NA	NA	NA
WP_158660361.1\|117517_118963_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_104877745.1\|119051_119279_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104877746.1\|119282_119975_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.3e-25	35.2
WP_158660362.1\|120032_120269_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_104877748.1\|120382_120889_-	cupin domain-containing protein	NA	NA	NA	NA
WP_031274475.1\|121085_121775_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.4e-35	36.6
WP_104877749.1\|121972_123115_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.9e-29	30.0
WP_104877750.1\|123114_124410_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
WP_104877751.1\|124625_125501_+	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_086439459.1\|125500_125920_+	AzlD domain-containing protein	NA	NA	NA	NA
WP_014081459.1\|126103_126502_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_104877752.1\|126501_127677_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0ICY9	Lactobacillus_phage	2.0e-114	54.9
WP_069775946.1\|127955_128501_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_104877753.1\|128891_130106_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_086439787.1\|130572_131613_+	AI-2E family transporter	NA	NA	NA	NA
WP_099032535.1\|131700_133362_+	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_086439785.1\|133648_134134_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.2e-21	43.5
WP_104877754.1\|134117_135257_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003686529.1\|135297_136593_+	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	8.2e-21	32.7
WP_104877755.1\|136954_137971_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_104877756.1\|137982_139533_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA
WP_046025600.1\|140067_140790_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A1D7SPE1	Cyanophage	1.2e-34	36.4
WP_012390750.1\|140792_141035_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_099032496.1\|141035_141716_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_104877757.1\|141719_143945_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.8e-145	41.6
WP_104877758.1\|143920_145384_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.7e-60	34.5
WP_104877759.1\|145383_146421_+	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	9.4e-60	39.8
WP_046025598.1\|146429_147011_+	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
WP_057195096.1\|147012_148548_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.8e-74	46.2
WP_104877760.1\|148821_150096_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_173677565.1\|150123_150576_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	3.3e-33	50.0
WP_104877762.1\|150644_151895_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	1.9e-54	37.2
WP_003682507.1\|152311_153007_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_104877763.1\|153130_154309_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_104877764.1\|154421_155426_+	hypothetical protein	NA	NA	NA	NA
WP_057195422.1\|155910_156282_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_057195421.1\|156295_156604_+	cupredoxin domain-containing protein	NA	NA	NA	NA
WP_104877765.1\|156603_158535_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	1.3e-91	37.3
WP_057195419.1\|158815_160198_+	MFS transporter	NA	NA	NA	NA
WP_003682515.1\|160245_160722_-	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	7.7e-17	35.2
WP_158660363.1\|166695_167850_-	hypothetical protein	NA	NA	NA	NA
WP_104877752.1\|167987_169163_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0ICY9	Lactobacillus_phage	2.0e-114	54.9
WP_014081459.1\|169162_169561_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_104877768.1\|169892_170528_-	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_099032586.1\|170653_171043_+	tautomerase family protein	NA	NA	NA	NA
WP_081011462.1\|171037_171172_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_157950662.1\|171149_171545_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_104877770.1\|171779_172436_+	nitroreductase	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	6.0e-12	25.7
WP_162495483.1\|172850_173105_+	short-chain dehydrogenase/reductase family oxidoreductase	NA	NA	NA	NA
WP_062813485.1\|174079_174274_+	CsbD family protein	NA	NA	NA	NA
WP_104877771.1\|174767_175136_+	DUF2255 family protein	NA	NA	NA	NA
WP_104877772.1\|175923_176508_+	cadmium resistance transporter	NA	NA	NA	NA
WP_086439393.1\|176606_177059_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-32	51.5
WP_104877773.1\|177137_178388_+\|transposase	transposase	A0A286QQE5	Streptococcus_phage	2.9e-55	36.8
WP_057195328.1\|178737_179076_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_104877774.1\|179617_181114_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_104877775.1\|181309_183166_+	NEAT domain-containing protein	NA	NA	NA	NA
WP_057195325.1\|183155_183947_+	NEAT domain-containing protein	NA	NA	NA	NA
WP_057195324.1\|183961_184840_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA
WP_104877776.1\|184841_185768_+	iron ABC transporter permease	NA	NA	NA	NA
WP_104877777.1\|185760_186522_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.0e-15	30.5
WP_104877778.1\|186626_187559_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.5e-27	30.7
WP_057195321.1\|187828_189133_-	MFS transporter	Q6JIH2	Burkholderia_virus	4.8e-45	27.5
WP_086439392.1\|189453_190293_+	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.4e-98	62.8
WP_104877779.1\|196097_197069_+	2-hydroxyacid dehydrogenase family protein	M1H502	Paramecium_bursaria_Chlorella_virus	5.4e-25	31.7
WP_164879419.1\|197238_198450_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_086439934.1\|198625_200284_-	PucR family transcriptional regulator	NA	NA	NA	NA
WP_086439935.1\|200373_201201_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_104877780.1\|201336_202695_-	cytosine permease	NA	NA	NA	NA
WP_104877781.1\|203281_204640_+	allantoinase AllB	NA	NA	NA	NA
WP_104877782.1\|204809_206030_+	allantoate deiminase	NA	NA	NA	NA
WP_104877783.1\|206045_206831_+	(S)-ureidoglycine aminohydrolase	NA	NA	NA	NA
WP_086439940.1\|206850_207915_+	ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_104877784.1\|207935_209696_+	acyl-CoA synthetase FdrA	NA	NA	NA	NA
WP_173677543.1\|209695_210964_+	DUF1116 domain-containing protein	NA	NA	NA	NA
WP_099032516.1\|211784_212729_+	carbamate kinase	NA	NA	NA	NA
WP_104877785.1\|212846_213785_+	pyrimidine-specific ribonucleoside hydrolase RihA	NA	NA	NA	NA
WP_104877786.1\|213861_214509_+	nitroreductase	NA	NA	NA	NA
WP_104877787.1\|214518_215250_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_104877788.1\|215260_215575_+	MazG-like family protein	A0A2R3ZXQ3	Staphylococcus_phage	5.1e-17	39.4
WP_046025890.1\|216207_217458_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	2.9e-55	37.5
WP_104877789.1\|217699_218740_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_104877790.1\|218942_221468_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	9.3e-69	26.5
WP_046025890.1\|222168_223419_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	2.9e-55	37.5

DBSCAN-SWA_2

259146 : 326661

Streptococcus_phage(11.76%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104877809.1\|259146_260397_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	2.9e-55	37.5
WP_049184311.1\|260582_261047_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_104877810.1\|261183_261741_+	LemA family protein	NA	NA	NA	NA
WP_057195290.1\|261751_262651_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
WP_057195291.1\|262825_264205_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
WP_104877811.1\|264375_265854_+	DEAD/DEAH box helicase	A0A1V0SBR7	Catovirus	1.1e-66	38.0
WP_003684028.1\|265857_266217_+	holo-ACP synthase	NA	NA	NA	NA
WP_003684030.1\|266219_267341_+	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	3.2e-29	28.9
WP_021815621.1\|267352_267706_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A2K9VCH5	Lactobacillus_phage	3.0e-10	38.5
WP_104877812.1\|267838_268474_-	CBS domain-containing protein	NA	NA	NA	NA
WP_003684038.1\|268661_269222_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_104877813.1\|269239_272779_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_012390804.1\|272778_273051_+	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_003686487.1\|273139_273496_+	septum formation initiator family protein	NA	NA	NA	NA
WP_057195299.1\|273625_274132_+	RNA-binding protein S1	NA	NA	NA	NA
WP_104877814.1\|274131_275481_+\|tRNA	tRNA lysidine(34) synthetase TilS	A0A0N7G7K4	Chrysochromulina_ericina_virus	2.6e-09	25.9
WP_104877815.1\|275497_276046_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	6.1e-10	31.1
WP_099032501.1\|276129_278295_+\|protease	ATP-dependent zinc metalloprotease FtsH	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	9.6e-107	48.8
WP_012390806.1\|278371_279253_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_003684059.1\|279341_280343_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_003686497.1\|280358_281852_+\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.6e-89	41.4
WP_104877816.1\|289059_289473_+	glucose starvation-inducible protein B	NA	NA	NA	NA
WP_104877817.1\|289647_290520_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	7.0e-40	40.2
WP_068805819.1\|291214_291574_-	hypothetical protein	NA	NA	NA	NA
WP_104877778.1\|291901_292834_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.5e-27	30.7
WP_104877819.1\|293050_294613_+	hypothetical protein	NA	NA	NA	NA
WP_104877820.1\|294707_294896_+	hypothetical protein	NA	NA	NA	NA
WP_104877821.1\|294885_295242_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_104877822.1\|295243_295465_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104877823.1\|295641_300078_+	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA
WP_104877824.1\|301473_303699_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
WP_104877825.1\|303931_305428_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.3e-67	32.5
WP_104877826.1\|305521_306367_+	metallophosphoesterase	NA	NA	NA	NA
WP_104877827.1\|306663_307305_+	hypothetical protein	NA	NA	NA	NA
WP_004563349.1\|307387_308101_+	amino acid racemase	NA	NA	NA	NA
WP_003684331.1\|308715_309879_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	1.8e-160	71.7
WP_104877828.1\|310080_310782_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_104877829.1\|310812_312273_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.8e-110	45.9
WP_104877830.1\|312289_313120_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	3.6e-78	56.5
WP_104877831.1\|313123_315301_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_104877832.1\|315293_315749_+	SprT family protein	NA	NA	NA	NA
WP_104877833.1\|316035_317916_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	1.5e-95	33.0
WP_104877834.1\|317899_318862_+	beta-galactosidase small subunit	NA	NA	NA	NA
WP_062813458.1\|319004_319961_+	AEC family transporter	NA	NA	NA	NA
WP_104877835.1\|320249_320927_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_104877836.1\|320930_321806_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_104877837.1\|322122_323460_-	C1 family peptidase	A0A2H4UU28	Bodo_saltans_virus	9.6e-49	27.6
WP_057194463.1\|323523_324138_-	sugar O-acetyltransferase	NA	NA	NA	NA
WP_104877838.1\|324165_324852_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_046025890.1\|325410_326661_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	2.9e-55	37.5

DBSCAN-SWA_3

665228 : 727156

Bacillus_phage(16.67%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_086439447.1\|665228_668021_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	2.4e-78	25.0
WP_003686347.1\|668161_668374_+	cold shock domain-containing protein	NA	NA	NA	NA
WP_104877982.1\|668375_668924_+	NUDIX hydrolase	NA	NA	NA	NA
WP_057195043.1\|668924_669161_+	hypothetical protein	NA	NA	NA	NA
WP_003682112.1\|669173_669881_+	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_104877983.1\|669880_670225_+	DUF1831 domain-containing protein	NA	NA	NA	NA
WP_003682110.1\|670331_671465_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_086439458.1\|671882_673478_+	amidohydrolase	NA	NA	NA	NA
WP_086439446.1\|673585_674518_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_003682107.1\|674726_675383_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_003682106.1\|675397_676087_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_104877984.1\|676087_678634_+	AAA family ATPase	A0A1P8DII4	Virus_Rctr197k	1.2e-31	28.9
WP_104877985.1\|678704_679691_+	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	8.1e-37	33.0
WP_003686362.1\|679722_680151_-	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA
WP_104877986.1\|680374_681349_-	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA
WP_003682101.1\|681608_681824_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA
WP_003682098.1\|681950_682397_+	hypothetical protein	NA	NA	NA	NA
WP_003686366.1\|682502_683072_-	peptide deformylase	A0A2I7S809	Vibrio_phage	5.8e-11	41.3
WP_104877987.1\|683199_683487_+	UPF0223 family protein	NA	NA	NA	NA
WP_104877988.1\|683490_684255_+	inositol monophosphatase family protein	NA	NA	NA	NA
WP_104877989.1\|684332_686180_+	translational GTPase TypA	NA	NA	NA	NA
WP_104877990.1\|686282_687482_+	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA
WP_003686372.1\|687468_687765_+	YlbG family protein	NA	NA	NA	NA
WP_003682085.1\|687767_688328_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_057195368.1\|688332_688854_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	1.4e-24	38.0
WP_104877991.1\|688837_689887_+	PDZ domain-containing protein	NA	NA	NA	NA
WP_173677550.1\|689958_690627_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_003682078.1\|690681_691161_+	ComE operon protein 2	A7KUY9	Bacillus_phage	4.1e-34	56.7
WP_104877993.1\|691161_693399_+	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	4.6e-27	30.6
WP_003682073.1\|693416_694445_+	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_057195225.1\|695753_696008_-	30S ribosomal protein S20	NA	NA	NA	NA
WP_003682069.1\|696253_696523_+	30S ribosomal protein S15	NA	NA	NA	NA
WP_104877994.1\|698215_700015_+	ribonuclease J	NA	NA	NA	NA
WP_057195227.1\|700105_701002_+	hypothetical protein	NA	NA	NA	NA
WP_086439436.1\|701182_702373_+	elongation factor Tu	A0A1V0SGC3	Hokovirus	8.6e-33	27.8
WP_104877995.1\|702544_703852_+	trigger factor	NA	NA	NA	NA
WP_057195230.1\|704002_705253_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.2e-135	56.9
WP_057195231.1\|705266_705860_+	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_003682052.1\|705859_706159_+	nucleoside triphosphate pyrophosphohydrolase family protein	A0A1S7FYY8	Listeria_phage	6.9e-24	51.5
WP_003682050.1\|706425_706572_-	hypothetical protein	NA	NA	NA	NA
WP_173677567.1\|706774_707506_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.6e-29	37.2
WP_104877996.1\|707784_709596_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_104877997.1\|709660_710968_+	GTPase ObgE	NA	NA	NA	NA
WP_003682045.1\|710994_711927_+	ribonuclease Z	NA	NA	NA	NA
WP_173677551.1\|711953_712787_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_104877999.1\|712859_715157_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.4e-70	29.3
WP_024500798.1\|715176_715698_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.3e-30	44.0
WP_104878000.1\|716029_716407_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_003682040.1\|716486_717485_-	D-2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	7.7e-51	36.3
WP_104878001.1\|717986_718796_+	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
WP_003682036.1\|719145_719568_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_104878002.1\|719570_720107_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_003682029.1\|720847_721156_-	membrane protein	NA	NA	NA	NA
WP_104878003.1\|721570_722758_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.0e-37	29.1
WP_104878004.1\|722840_723719_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.2e-42	36.4
WP_003688751.1\|723742_724030_-\|transposase	transposase	NA	NA	NA	NA
WP_104878005.1\|724387_725608_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.4e-94	46.0
WP_104878006.1\|726232_727156_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.5e-32	31.6

DBSCAN-SWA_4

731870 : 790941

unidentified_phage(16.67%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104878010.1\|731870_732803_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	4.2e-27	30.4
WP_104878011.1\|733053_734643_-	asparagine synthase B	A0A0G2Y369	Acanthamoeba_polyphaga_mimivirus	5.6e-104	39.9
WP_104878012.1\|737022_737967_+	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
WP_057194895.1\|738048_738489_-	hypothetical protein	NA	NA	NA	NA
WP_104878013.1\|738499_739489_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_003682001.1\|739510_739957_-	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	2.4e-20	36.7
WP_104878014.1\|740058_740679_+	hypothetical protein	NA	NA	NA	NA
WP_057195093.1\|740936_741155_-	hypothetical protein	NA	NA	NA	NA
WP_057195092.1\|741382_741649_+	hypothetical protein	NA	NA	NA	NA
WP_104878015.1\|742799_743633_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_154070666.1\|743716_743878_-	hypothetical protein	NA	NA	NA	NA
WP_057195090.1\|743862_744171_-	hypothetical protein	NA	NA	NA	NA
WP_076810712.1\|744394_745075_+	serine dehydratase	NA	NA	NA	NA
WP_086439354.1\|745075_745963_+	L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha	NA	NA	NA	NA
WP_003681984.1\|745959_746274_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
WP_046025890.1\|747305_748556_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	2.9e-55	37.5
WP_057195086.1\|749164_750334_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
WP_104878016.1\|750564_751191_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	3.8e-16	52.9
WP_057727693.1\|751346_751598_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_003685231.1\|751674_751902_+	YneF family protein	NA	NA	NA	NA
WP_086439860.1\|751968_752601_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_057195082.1\|752696_753449_+\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
WP_057195081.1\|753441_753732_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_021815938.1\|753885_754665_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_057195080.1\|754755_755634_+	elongation factor Ts	NA	NA	NA	NA
WP_003681954.1\|755714_756440_+	UMP kinase	NA	NA	NA	NA
WP_021815941.1\|756439_757000_+	ribosome recycling factor	NA	NA	NA	NA
WP_104878017.1\|757126_757900_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	7.8e-19	35.3
WP_099032419.1\|757916_758705_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_086439858.1\|758726_759998_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_104878018.1\|760031_761753_+\|tRNA	proline--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.8e-07	25.9
WP_104878019.1\|761892_766236_+	PolC-type DNA polymerase III	A0A0K2SUJ2	Clostridium_phage	1.7e-14	35.3
WP_003681934.1\|766627_767107_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_057195073.1\|767126_768353_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_003681930.1\|768389_768692_+	YlxR family protein	NA	NA	NA	NA
WP_057195072.1\|768684_769008_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA
WP_104878020.1\|769012_771346_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.6e-20	24.6
WP_104878021.1\|771358_771721_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_104878022.1\|771790_772687_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_096493789.1\|772697_773663_+	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
WP_104878023.1\|776853_778254_+	amino acid permease	NA	NA	NA	NA
WP_173677568.1\|778982_779696_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_104878024.1\|780650_781529_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_003688751.1\|781552_781840_-\|transposase	transposase	NA	NA	NA	NA
WP_104878026.1\|781995_782904_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.4e-11	30.2
WP_099032578.1\|784503_785490_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_104878029.1\|785647_787342_+	alpha-glucosidase	NA	NA	NA	NA
WP_104878030.1\|787350_788688_+	SLC45 family MFS transporter	NA	NA	NA	NA
WP_081540359.1\|788896_790036_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.0e-43	33.6
WP_104878031.1\|790068_790941_-\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1202980 : 1259532

Bacillus_phage(27.27%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104878266.1\|1202980_1203187_-\|transposase	transposase	NA	NA	NA	NA
WP_104878267.1\|1203342_1204509_-	MFS transporter	NA	NA	NA	NA
WP_104878268.1\|1205134_1206058_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	3.7e-31	31.0
WP_104878269.1\|1206166_1206982_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_104878270.1\|1206985_1207840_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_104878271.1\|1207845_1209144_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_104878272.1\|1209271_1210411_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-24	35.3
WP_104878273.1\|1211860_1213000_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.1e-43	33.3
WP_104878274.1\|1213174_1214086_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_104878275.1\|1214203_1214830_+	carbonic anhydrase family protein	NA	NA	NA	NA
WP_104878276.1\|1214884_1217389_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_062813825.1\|1217390_1218473_-	carbamoyl phosphate synthase small subunit	NA	NA	NA	NA
WP_104878752.1\|1218502_1219378_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_104878277.1\|1219418_1219856_-	signal peptidase II	NA	NA	NA	NA
WP_003683310.1\|1219855_1220290_-	hypothetical protein	NA	NA	NA	NA
WP_104878278.1\|1220302_1220704_+	ribonuclease HI family protein	NA	NA	NA	NA
WP_104878279.1\|1220859_1221462_-	nitroreductase family protein	NA	NA	NA	NA
WP_104878280.1\|1221685_1222549_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_104878281.1\|1222762_1223452_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_187344546.1\|1223538_1223706_-	hypothetical protein	NA	NA	NA	NA
WP_010011610.1\|1224370_1225249_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_003688751.1\|1225272_1225560_-\|transposase	transposase	NA	NA	NA	NA
WP_104878282.1\|1226321_1227800_+	amidase	NA	NA	NA	NA
WP_104878283.1\|1229480_1230812_+	Sapep family Mn(2+)-dependent dipeptidase	NA	NA	NA	NA
WP_104878284.1\|1231049_1232183_-	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA
WP_104878285.1\|1232225_1232675_-	NUDIX hydrolase	NA	NA	NA	NA
WP_104878286.1\|1232678_1233860_-	ATP-binding protein	NA	NA	NA	NA
WP_104878287.1\|1233967_1235902_-	GTP-binding protein	E4ZFJ7	Streptococcus_phage	2.1e-65	30.7
WP_015639179.1\|1236554_1236914_-	cell division regulator GpsB	NA	NA	NA	NA
WP_104878288.1\|1237021_1237618_-	DUF1273 domain-containing protein	NA	NA	NA	NA
WP_086439759.1\|1237708_1238344_+	Holliday junction resolvase RecU	A0A1C8E9C3	Bacillus_phage	8.7e-24	36.6
WP_104878289.1\|1238336_1240601_+	transglycosylase domain-containing protein	NA	NA	NA	NA
WP_104878290.1\|1240707_1241619_-	EamA family transporter	NA	NA	NA	NA
WP_104878291.1\|1241741_1242761_+	aldo/keto reductase	NA	NA	NA	NA
WP_104878292.1\|1243077_1244085_-	DUF1002 domain-containing protein	NA	NA	NA	NA
WP_104878293.1\|1244184_1244913_-	DnaD domain protein	A0A0N7AE27	Bacillus_phage	2.7e-13	43.5
WP_004563225.1\|1245004_1246300_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	7.4e-54	29.2
WP_057194687.1\|1246326_1246845_-	DUF5590 domain-containing protein	NA	NA	NA	NA
WP_104878294.1\|1246895_1249736_-	3'-5' exoribonuclease	A0A1X9I5C8	Streptococcus_phage	8.0e-61	34.4
WP_104878295.1\|1249964_1250900_+	mevalonate kinase	NA	NA	NA	NA
WP_104878296.1\|1250901_1251891_+	diphosphomevalonate decarboxylase	NA	NA	NA	NA
WP_104878297.1\|1251910_1253020_+	phosphomevalonate kinase	NA	NA	NA	NA
WP_057194692.1\|1253075_1254161_+	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_004563232.1\|1254316_1255114_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.5e-12	31.8
WP_104878298.1\|1255124_1256006_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_104878299.1\|1256001_1256937_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_057194695.1\|1256908_1257772_-	phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_046025890.1\|1258281_1259532_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A286QQE5	Streptococcus_phage	2.9e-55	37.5

DBSCAN-SWA_6

1264111 : 1323000

Bacillus_phage(18.18%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157950660.1\|1264111_1264270_+\|transposase	transposase	NA	NA	NA	NA
WP_104878303.1\|1264283_1265030_-	DUF998 domain-containing protein	NA	NA	NA	NA
WP_157950661.1\|1265139_1265262_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_086031793.1\|1265428_1265656_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104878304.1\|1265832_1267605_-	oleate hydratase	NA	NA	NA	NA
WP_035437582.1\|1268090_1269422_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_104878305.1\|1270053_1271793_+	pyruvate oxidase	NA	NA	NA	NA
WP_162495478.1\|1272832_1273054_-	hypothetical protein	NA	NA	NA	NA
WP_003606447.1\|1273744_1273993_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_104878306.1\|1274236_1275253_+\|transposase	IS30 family transposase	A0A2K9V2S9	Faecalibacterium_phage	2.7e-35	33.1
WP_104878307.1\|1275409_1276516_-	anion permease	NA	NA	NA	NA
WP_104878308.1\|1278025_1279246_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.6e-95	46.0
WP_157950665.1\|1279265_1279439_-	hypothetical protein	NA	NA	NA	NA
WP_010579558.1\|1279438_1279657_-	hypothetical protein	NA	NA	NA	NA
WP_104878309.1\|1280344_1281304_+	D-2-hydroxyacid dehydrogenase	A0A1V0SBV6	Catovirus	2.3e-28	30.9
WP_010011610.1\|1281556_1282435_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
WP_003688751.1\|1282458_1282746_-\|transposase	transposase	NA	NA	NA	NA
WP_104878310.1\|1283163_1284303_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	7.4e-42	32.8
WP_104878311.1\|1284552_1285470_-	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_104878312.1\|1285482_1288662_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
WP_104878313.1\|1288661_1289744_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.7e-56	35.9
WP_057195398.1\|1289745_1291035_-	dihydroorotase	NA	NA	NA	NA
WP_057195397.1\|1291034_1292000_-	aspartate carbamoyltransferase catalytic subunit	A0A1J0F9B8	Only_Syngen_Nebraska_virus	4.5e-24	29.9
WP_104878314.1\|1292334_1293129_-	putative hydro-lyase	NA	NA	NA	NA
WP_104878315.1\|1293237_1294206_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_104878316.1\|1296983_1297862_-	type I-E CRISPR-associated endoribonuclease Cas2	NA	NA	NA	NA
WP_104878317.1\|1297865_1298804_-	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
WP_104878318.1\|1298800_1299457_-	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
WP_104878753.1\|1299469_1300177_-	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
WP_104878319.1\|1300157_1301267_-	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
WP_104878320.1\|1301275_1301860_-	type I-E CRISPR-associated protein Cse2/CasB	NA	NA	NA	NA
WP_104878321.1\|1301876_1303541_-	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
WP_104878322.1\|1303521_1306266_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
WP_003683897.1\|1306495_1306855_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_104878323.1\|1306975_1308403_-	amino acid permease	NA	NA	NA	NA
WP_057194208.1\|1308413_1309172_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_104878324.1\|1309171_1309681_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_003684331.1\|1309835_1310999_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	1.8e-160	71.7
WP_004563246.1\|1311570_1311831_-	KH domain-containing protein	NA	NA	NA	NA
WP_003683887.1\|1311845_1312121_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_104878326.1\|1312250_1312955_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_104878327.1\|1312969_1313725_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.1e-16	29.0
WP_104878328.1\|1313737_1314619_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_104878329.1\|1314620_1315520_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_104878330.1\|1315519_1316395_-	phosphate ABC transporter substrate-binding protein	E3SM63	Prochlorococcus_phage	7.8e-07	28.5
WP_004563250.1\|1316677_1317382_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_104878331.1\|1318429_1319380_-	magnesium transporter CorA family protein	NA	NA	NA	NA
WP_104878754.1\|1321807_1322098_+\|transposase	transposase	NA	NA	NA	NA
WP_041812692.1\|1322121_1323000_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	5.2e-43	36.8

DBSCAN-SWA_7

1346767 : 1408677

Lactobacillus_phage(86.0%)

capsid,transposase,integrase,terminase,plate,tRNA,head,holin,protease,portal,tail

attL 1364883:1364901|attR 1408678:1408696

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057194227.1\|1346767_1347718_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.5e-11	32.7
WP_104878342.1\|1347740_1350158_-	primosomal protein N'	NA	NA	NA	NA
WP_104878343.1\|1350129_1351359_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	3.0e-49	37.7
WP_057194230.1\|1351429_1351714_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_049182629.1\|1351710_1352331_-	guanylate kinase	A0A0M5KCK5	Mollivirus	2.2e-11	38.9
WP_104878344.1\|1352523_1352841_+	hypothetical protein	NA	NA	NA	NA
WP_104878345.1\|1352932_1354627_-	DNA repair protein RecN	NA	NA	NA	NA
WP_104878346.1\|1354644_1355094_-	ArgR family transcriptional regulator	NA	NA	NA	NA
WP_104878347.1\|1355107_1355923_-	TlyA family RNA methyltransferase	NA	NA	NA	NA
WP_104878348.1\|1355932_1356808_-	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_057194235.1\|1356807_1357101_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_104878349.1\|1357100_1358549_-	exodeoxyribonuclease VII large subunit	A0A1V0SIT1	Klosneuvirus	2.8e-33	30.7
WP_104878350.1\|1358549_1359407_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.2e-38	39.3
WP_057194237.1\|1359584_1360004_-	transcription antitermination factor NusB	NA	NA	NA	NA
WP_003683803.1\|1360003_1360444_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_104878351.1\|1360534_1361611_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_104878352.1\|1361754_1362678_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.8e-30	31.7
WP_003683800.1\|1362754_1363036_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_003683798.1\|1363059_1363383_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_003683797.1\|1363395_1363704_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_104878353.1\|1363867_1364509_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
1364883:1364901	attL	NA	NA	NA	NA
WP_104878354.1\|1365476_1365938_-	GNAT family N-acetyltransferase	E9LUK4	Lactobacillus_phage	5.1e-82	99.3
WP_104878355.1\|1367033_1368281_-	LysM peptidoglycan-binding domain-containing protein	E9LUK3	Lactobacillus_phage	1.7e-220	98.6
WP_104878356.1\|1368283_1368751_-\|holin	phage holin	E9LUK2	Lactobacillus_phage	1.1e-65	91.7
WP_016058037.1\|1368763_1369099_-	hypothetical protein	E9LUK1	Lactobacillus_phage	6.5e-55	100.0
WP_104878755.1\|1369117_1369819_-	hypothetical protein	E9LUK0	Lactobacillus_phage	5.8e-29	38.6
WP_104878357.1\|1369919_1370990_-\|plate	BppU family phage baseplate upper protein	NA	NA	NA	NA
WP_104878358.1\|1371001_1372138_-	SGNH/GDSL hydrolase family protein	D2KRC2	Lactobacillus_phage	1.6e-15	30.5
WP_104878359.1\|1372149_1372407_-	hypothetical protein	E9LUJ7	Lactobacillus_phage	4.7e-21	63.3
WP_164879406.1\|1372409_1372586_-	hypothetical protein	E9LUJ6	Lactobacillus_phage	2.7e-20	93.1
WP_104878360.1\|1372582_1376020_-	hypothetical protein	E9LUJ5	Lactobacillus_phage	3.8e-81	43.3
WP_104878361.1\|1376023_1378105_-\|tail	phage tail protein	E9LUJ4	Lactobacillus_phage	0.0e+00	95.7
WP_104878362.1\|1378116_1378944_-\|tail	phage tail family protein	E9LUJ3	Lactobacillus_phage	1.9e-151	94.2
WP_104878363.1\|1378972_1383265_-\|tail	phage tail tape measure protein	E9LUJ2	Lactobacillus_phage	0.0e+00	97.2
WP_104878364.1\|1383463_1383808_-	hypothetical protein	E9LUJ0	Lactobacillus_phage	1.6e-56	94.7
WP_104878365.1\|1383872_1384484_-\|tail	phage tail protein	E9LUI9	Lactobacillus_phage	7.1e-108	96.1
WP_104878366.1\|1384499_1384904_-	hypothetical protein	E9LUI8	Lactobacillus_phage	1.1e-59	80.6
WP_104878367.1\|1384900_1385284_-	HK97 gp10 family phage protein	E9LUI7	Lactobacillus_phage	6.1e-57	84.3
WP_031274812.1\|1385267_1385615_-\|head	phage head closure protein	E9LUI6	Lactobacillus_phage	1.4e-60	99.1
WP_016058021.1\|1385601_1385910_-\|head,tail	phage head-tail connector protein	E9LUI5	Lactobacillus_phage	2.1e-52	100.0
WP_158660368.1\|1385920_1386034_-	hypothetical protein	L0P8M2	Lactobacillus_phage	1.2e-05	62.2
WP_104878368.1\|1386057_1387176_-\|capsid	phage major capsid protein	E9LUI4	Lactobacillus_phage	2.6e-201	98.1
WP_173677573.1\|1387193_1387793_-\|head,protease	HK97 family phage prohead protease	D2KRA8	Lactobacillus_phage	4.7e-88	97.0
WP_104878370.1\|1387764_1389030_-\|portal	phage portal protein	E9LUI2	Lactobacillus_phage	1.4e-238	99.0
WP_164879407.1\|1389038_1389197_-	hypothetical protein	D2KRA6	Lactobacillus_phage	3.2e-20	98.1
WP_104878371.1\|1389209_1390919_-\|terminase	terminase large subunit	E9LUI0	Lactobacillus_phage	0.0e+00	98.9
WP_104878372.1\|1390915_1391371_-\|terminase	P27 family phage terminase small subunit	E9LUH9	Lactobacillus_phage	2.7e-80	99.3
WP_104878373.1\|1391542_1392328_-	AAA family ATPase	E9LUN5	Lactobacillus_phage	4.6e-152	97.7
WP_104878374.1\|1392732_1392939_+	CsbD family protein	NA	NA	NA	NA
WP_104878375.1\|1393012_1393462_-	hypothetical protein	NA	NA	NA	NA
WP_104878376.1\|1393616_1394450_-	hypothetical protein	NA	NA	NA	NA
WP_104878377.1\|1394979_1396131_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.3e-152	69.3
WP_104878378.1\|1396364_1396838_-	hypothetical protein	E9LUN3	Lactobacillus_phage	4.3e-52	64.6
WP_104878756.1\|1396852_1397221_-	DUF3310 domain-containing protein	E9LUN2	Lactobacillus_phage	2.4e-34	58.2
WP_104878379.1\|1397216_1397699_-	hypothetical protein	NA	NA	NA	NA
WP_173677557.1\|1397822_1397981_-	hypothetical protein	D2KRE6	Lactobacillus_phage	6.4e-21	88.5
WP_104878380.1\|1397984_1398803_-	ATP-binding protein	E9LUM7	Lactobacillus_phage	9.7e-153	97.8
WP_104878381.1\|1398811_1399561_-	hypothetical protein	E9LUM6	Lactobacillus_phage	9.6e-139	97.2
WP_104878382.1\|1399575_1400010_-	single-stranded DNA-binding protein	E9LUM5	Lactobacillus_phage	4.6e-77	99.3
WP_016058060.1\|1400010_1400859_-	PD-(D/E)XK nuclease-like domain-containing protein	E9LUM4	Lactobacillus_phage	4.1e-170	100.0
WP_016058059.1\|1400851_1401850_-	recombinase RecT	E9LUM3	Lactobacillus_phage	3.3e-171	100.0
WP_016058058.1\|1401852_1402062_-	hypothetical protein	E9LUM2	Lactobacillus_phage	2.8e-32	100.0
WP_173677558.1\|1402272_1402410_-	hypothetical protein	E9LUM0	Lactobacillus_phage	1.2e-12	88.9
WP_104878383.1\|1402421_1402748_-	hypothetical protein	E9LUL9	Lactobacillus_phage	2.1e-58	99.1
WP_104878384.1\|1402946_1403135_-	hypothetical protein	NA	NA	NA	NA
WP_104878385.1\|1403227_1403419_-	hypothetical protein	NA	NA	NA	NA
WP_104878386.1\|1403430_1404210_-	Rha family transcriptional regulator	E9LUL6	Lactobacillus_phage	6.2e-141	95.7
WP_104878387.1\|1404249_1404465_-	helix-turn-helix transcriptional regulator	E9LUL5	Lactobacillus_phage	1.9e-31	98.6
WP_104878388.1\|1404614_1404944_+	helix-turn-helix transcriptional regulator	E9LUL4	Lactobacillus_phage	3.2e-46	84.0
WP_104878389.1\|1404947_1406021_+	hypothetical protein	NA	NA	NA	NA
WP_158660369.1\|1406361_1406499_-	hypothetical protein	NA	NA	NA	NA
WP_104878390.1\|1406515_1406956_+	ImmA/IrrE family metallo-endopeptidase	D6PSS8	Lactobacillus_phage	1.9e-17	37.4
WP_104878391.1\|1407003_1407516_+	hypothetical protein	E9LUL0	Lactobacillus_phage	2.8e-65	95.3
WP_104878392.1\|1407588_1408677_+\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	8.0e-203	99.4
1408678:1408696	attR	NA	NA	NA	NA

DBSCAN-SWA_8

1454874 : 1491943

Staphylococcus_phage(16.67%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003686193.1\|1454874_1455507_-\|tRNA	DUF4479 and tRNA-binding domain-containing protein	NA	NA	NA	NA
WP_057194279.1\|1455630_1455948_-	thioredoxin family protein	A0A1X9I9P5	Staphylococcus_phage	2.4e-06	30.9
WP_003683689.1\|1456123_1456456_+	hypothetical protein	NA	NA	NA	NA
WP_003683688.1\|1456662_1457310_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_104878416.1\|1457327_1458512_-	ABC transporter permease	NA	NA	NA	NA
WP_003686186.1\|1458504_1459230_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-22	27.8
WP_104878417.1\|1459378_1459807_+	HIT family protein	NA	NA	NA	NA
WP_104878418.1\|1459808_1460042_+	hypothetical protein	NA	NA	NA	NA
WP_104878419.1\|1460120_1461113_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_104878420.1\|1461204_1462161_-	HD domain-containing protein	NA	NA	NA	NA
WP_104878421.1\|1462312_1462675_-	YlbF family regulator	NA	NA	NA	NA
WP_104878422.1\|1462733_1464854_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA
WP_104878423.1\|1466126_1467347_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.0e-93	46.0
WP_104878424.1\|1467641_1468529_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_104878425.1\|1469127_1469634_+\|transposase	transposase	NA	NA	NA	NA
WP_087717460.1\|1469542_1469917_+\|transposase	transposase	A0A1X9I619	Streptococcus_phage	6.0e-17	42.0
WP_003688751.1\|1470006_1470294_+\|transposase	transposase	NA	NA	NA	NA
WP_104878426.1\|1471307_1472369_-	hypothetical protein	A0A1G5SA08	Enterococcus_phage	4.5e-25	28.7
WP_104878757.1\|1472870_1473569_+	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	3.1e-22	31.8
WP_104878427.1\|1474554_1475460_-	DUF2382 domain-containing protein	NA	NA	NA	NA
WP_104878428.1\|1476579_1477998_-	MATE family efflux transporter	NA	NA	NA	NA
WP_104878429.1\|1478973_1480662_-\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.5e-67	31.7
WP_104878430.1\|1481080_1481440_-	hypothetical protein	NA	NA	NA	NA
WP_104878431.1\|1481438_1481921_+	hypothetical protein	NA	NA	NA	NA
WP_104878432.1\|1481921_1483055_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.4e-08	24.5
WP_104878433.1\|1483038_1483629_-	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_057194291.1\|1483609_1484890_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_104878434.1\|1484886_1485459_-	GTP cyclohydrolase I FolE	A0A2I7S8W4	Vibrio_phage	2.6e-35	43.4
WP_057194292.1\|1485440_1485959_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003683659.1\|1485948_1486320_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003686163.1\|1486535_1487219_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_057194294.1\|1487237_1488245_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_057194295.1\|1488318_1488927_-	hypothetical protein	NA	NA	NA	NA
WP_104878435.1\|1489056_1489689_+	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	1.5e-47	46.8
WP_104878436.1\|1489788_1490907_-	glycoside hydrolase family 73 protein	A0A0K2CP65	Brevibacillus_phage	3.5e-20	43.8
WP_104878437.1\|1491010_1491943_-\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.9e-27	30.1

DBSCAN-SWA_9

1609406 : 1640000

Bacillus_phage(33.33%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104878502.1\|1609406_1610000_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_004563006.1\|1610016_1610238_+	hypothetical protein	NA	NA	NA	NA
WP_104878503.1\|1610274_1610964_-	class I SAM-dependent methyltransferase	A0A097BYE1	Leuconostoc_phage	5.9e-34	40.7
WP_104878504.1\|1611168_1611741_-	NADPH-dependent F420 reductase	NA	NA	NA	NA
WP_187344547.1\|1611743_1612160_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_104878506.1\|1612730_1614269_-	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_086439213.1\|1614332_1614839_-\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_104878507.1\|1616085_1617483_+	sodium:proton antiporter	NA	NA	NA	NA
WP_104878508.1\|1617938_1618979_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_104878509.1\|1619640_1620555_+	hypothetical protein	NA	NA	NA	NA
WP_104878510.1\|1621042_1622164_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_104878511.1\|1622312_1622600_+\|transposase	transposase	NA	NA	NA	NA
WP_104878761.1\|1622665_1623493_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.8e-38	34.0
WP_104878044.1\|1623579_1624140_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
WP_104878045.1\|1624151_1624337_+	DUF2273 domain-containing protein	NA	NA	NA	NA
WP_104878046.1\|1624364_1624907_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
WP_104878047.1\|1624921_1625173_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_104878512.1\|1625549_1626473_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	3.3e-32	31.6
WP_104878513.1\|1626818_1627727_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	6.4e-12	30.2
WP_104878762.1\|1627663_1628362_-	helix-turn-helix domain-containing protein	A0A0C5AJ29	Paenibacillus_phage	1.4e-22	31.7
WP_104878514.1\|1629608_1630379_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_104878515.1\|1630589_1633307_-	glycoside hydrolase family 65 protein	NA	NA	NA	NA
WP_086440013.1\|1634964_1635666_-	response regulator transcription factor	W8CYM9	Bacillus_phage	8.1e-23	29.3
WP_104878516.1\|1635655_1638340_-	sensor histidine kinase KdpD	NA	NA	NA	NA
WP_104878517.1\|1638641_1640000_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_10

1789256 : 1862274

Streptococcus_phage(17.65%)

transposase,integrase

attL 1779681:1779701|attR 1829905:1829925

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1779681:1779701	attL	NA	NA	NA	NA
WP_014081459.1\|1789256_1789655_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
WP_104878586.1\|1791889_1792618_+	WYL domain-containing protein	NA	NA	NA	NA
WP_086439766.1\|1792720_1792954_+	cytochrome B5	NA	NA	NA	NA
WP_104878587.1\|1793126_1793690_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q8W6R2	Burkholderia_virus	2.4e-09	33.1
WP_086439975.1\|1793902_1794913_-	HoxN/HupN/NixA family nickel/cobalt transporter	NA	NA	NA	NA
WP_104878588.1\|1794941_1795769_-	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA
WP_086439973.1\|1795793_1796504_-	aquaporin family protein	NA	NA	NA	NA
WP_104878589.1\|1796505_1797870_-	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA
WP_099032569.1\|1797869_1798628_-	nickel pincer cofactor biosynthesis protein LarB	A0A288TYA6	Enterococcus_phage	3.7e-21	47.2
WP_104878590.1\|1798635_1799919_-	nickel-dependent lactate racemase	NA	NA	NA	NA
WP_086439969.1\|1800159_1800831_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_086439317.1\|1803045_1803582_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003681394.1\|1803808_1804285_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_104878591.1\|1804345_1805461_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	2.7e-73	40.9
WP_104878593.1\|1806003_1807254_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	4.5e-56	37.0
WP_086439393.1\|1807332_1807785_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-32	51.5
WP_086439613.1\|1807858_1808557_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
WP_104878765.1\|1808566_1809619_-	aspartate--ammonia ligase	NA	NA	NA	NA
WP_104878594.1\|1809769_1810366_+	glycoside hydrolase family 73 protein	A0A0A7RUS8	Clostridium_phage	1.5e-22	42.8
WP_104878595.1\|1810384_1810906_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_173677560.1\|1811167_1812724_+	LytTR family transcriptional regulator	O64031	Bacillus_phage	3.3e-32	25.3
WP_086439610.1\|1812720_1813179_+	hypothetical protein	NA	NA	NA	NA
WP_173677561.1\|1814258_1814975_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
WP_086439608.1\|1814975_1815992_+	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_003681368.1\|1815994_1816423_+	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
WP_104878597.1\|1816394_1817783_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_104878598.1\|1817769_1818519_+	5-oxoprolinase subunit PxpA	NA	NA	NA	NA
WP_104878599.1\|1818531_1819743_+	divalent metal cation transporter	NA	NA	NA	NA
WP_104878600.1\|1819834_1821004_-	MFS transporter	NA	NA	NA	NA
WP_086439597.1\|1821463_1822795_-	NAD(P)/FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	6.3e-24	25.1
WP_057727893.1\|1823072_1823387_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	6.8e-14	39.6
WP_104878601.1\|1823534_1824461_+	AEC family transporter	NA	NA	NA	NA
WP_057194642.1\|1824401_1824650_-	hypothetical protein	NA	NA	NA	NA
WP_104878602.1\|1824726_1826079_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	2.6e-17	23.6
WP_104878603.1\|1826059_1827514_-	amino acid permease	NA	NA	NA	NA
WP_104878604.1\|1828438_1829269_-	YbgC/FadM family acyl-CoA thioesterase	NA	NA	NA	NA
WP_104878605.1\|1830119_1831502_-	argininosuccinate lyase	NA	NA	NA	NA
1829905:1829925	attR	NA	NA	NA	NA
WP_104878606.1\|1831501_1832791_-	argininosuccinate synthase	NA	NA	NA	NA
WP_104878607.1\|1833000_1834878_-	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_104878608.1\|1835041_1835743_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-35	41.3
WP_162495480.1\|1835752_1838314_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_104878610.1\|1838406_1839456_-	G5 domain-containing protein	NA	NA	NA	NA
WP_104878611.1\|1839638_1841624_-	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	7.1e-32	38.3
WP_057194653.1\|1841710_1842379_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_015639495.1\|1844812_1845133_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_104878612.1\|1845218_1845962_-	arginase family protein	NA	NA	NA	NA
WP_104878613.1\|1846069_1847020_-	nitronate monooxygenase	NA	NA	NA	NA
WP_003681317.1\|1847088_1847409_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_104878614.1\|1847456_1848029_-	DUF4767 domain-containing protein	NA	NA	NA	NA
WP_104878615.1\|1852855_1855198_-	nitric-oxide reductase large subunit	NA	NA	NA	NA
WP_104878616.1\|1855858_1857412_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.7e-17	28.6
WP_057195360.1\|1857726_1858338_+	GTP pyrophosphokinase	NA	NA	NA	NA
WP_104878617.1\|1858351_1859023_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-18	29.1
WP_104878618.1\|1859035_1860289_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_104877752.1\|1860700_1861876_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A0P0ICY9	Lactobacillus_phage	2.0e-114	54.9
WP_104878766.1\|1861875_1862274_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	2.1e-44	61.4

DBSCAN-SWA_11

1875293 : 1883703

Salmonella_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003685341.1\|1875293_1876016_-	nicotinamide mononucleotide transporter	G3BLP7	Salmonella_phage	1.5e-11	24.3
WP_057194723.1\|1876364_1877963_-	APC family permease	NA	NA	NA	NA
WP_075667411.1\|1878033_1878498_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	3.6e-35	52.5
WP_104878626.1\|1878580_1879909_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	3.7e-61	37.6
WP_104878627.1\|1880005_1881145_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.6e-44	34.4
WP_104878628.1\|1881537_1882527_-	D-2-hydroxyacid dehydrogenase	M1H9J0	Paramecium_bursaria_Chlorella_virus	3.4e-43	34.0
WP_162495481.1\|1882590_1883703_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	3.5e-28	32.2

DBSCAN-SWA_12

2045197 : 2054285

Brazilian_cedratvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_104878714.1\|2045197_2046136_+	phosphoglycerate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	3.5e-29	32.9
WP_104878715.1\|2046137_2046620_+	transcription elongation factor GreA	NA	NA	NA	NA
WP_031265527.1\|2046836_2047631_+	nicotinamide mononucleotide transporter	A0A0C5K6M3	Enterococcus_phage	1.8e-26	33.9
WP_104878716.1\|2047736_2048246_-	O-acetyl-ADP-ribose deacetylase	A0A0K1L687	Scale_drop_disease_virus	1.1e-37	50.6
WP_104878717.1\|2048254_2050159_-	peptidase M13	E3T4I7	Cafeteria_roenbergensis_virus	4.8e-70	29.5
WP_173677578.1\|2050295_2051597_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.0e-47	33.7
WP_104878719.1\|2051703_2051997_-	hypothetical protein	NA	NA	NA	NA
WP_057194137.1\|2051989_2053150_-	hypothetical protein	NA	NA	NA	NA
WP_104878720.1\|2053142_2054285_-	AAA family ATPase	A0A141HRX4	Bacillus_phage	1.7e-22	31.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_LT906621

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection